Query psy2489
Match_columns 369
No_of_seqs 227 out of 1504
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:32:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1301 GltP Na+/H+-dicarboxyl 100.0 2.7E-69 5.9E-74 538.6 27.2 317 22-355 56-400 (415)
2 KOG3787|consensus 100.0 1.4E-70 3.1E-75 538.0 17.4 329 19-362 67-457 (507)
3 PRK13027 C4-dicarboxylate tran 100.0 7.9E-63 1.7E-67 497.4 28.9 329 21-368 53-416 (421)
4 PRK11283 gltP glutamate/aspart 100.0 6.9E-63 1.5E-67 499.9 28.4 325 20-363 60-421 (437)
5 PRK01663 C4-dicarboxylate tran 100.0 2.5E-62 5.5E-67 494.6 27.8 324 21-363 54-411 (428)
6 PF00375 SDF: Sodium:dicarboxy 100.0 2.1E-59 4.6E-64 469.8 20.7 319 20-352 47-390 (390)
7 PRK13628 serine/threonine tran 100.0 4.4E-56 9.6E-61 446.0 26.8 309 21-354 61-402 (402)
8 PRK14695 serine/threonine tran 100.0 1.4E-53 3E-58 414.8 28.7 292 49-354 3-316 (319)
9 COG1823 Predicted Na+/dicarbox 100.0 3E-40 6.5E-45 317.8 22.8 325 22-365 87-455 (458)
10 COG3633 SstT Na+/serine sympor 100.0 8.9E-29 1.9E-33 232.3 9.1 262 80-354 135-402 (407)
11 COG1301 GltP Na+/H+-dicarboxyl 99.6 2.3E-14 5E-19 144.1 18.9 253 90-365 7-327 (415)
12 PRK01663 C4-dicarboxylate tran 99.6 7.1E-14 1.5E-18 142.1 19.5 241 95-358 13-325 (428)
13 PRK11283 gltP glutamate/aspart 99.6 2.8E-13 6.2E-18 138.0 21.1 247 93-358 10-336 (437)
14 PRK13027 C4-dicarboxylate tran 99.5 8E-13 1.7E-17 134.2 21.6 244 93-359 10-326 (421)
15 PF00375 SDF: Sodium:dicarboxy 99.5 4E-12 8.7E-17 128.0 20.1 248 95-364 5-319 (390)
16 PRK13628 serine/threonine tran 99.4 1.3E-11 2.9E-16 124.6 20.6 245 89-358 14-321 (402)
17 KOG3787|consensus 99.3 1.8E-11 3.9E-16 121.9 13.2 253 88-358 15-372 (507)
18 COG1823 Predicted Na+/dicarbox 99.2 6.9E-10 1.5E-14 108.5 18.6 245 90-354 33-363 (458)
19 PRK14695 serine/threonine tran 98.1 2.1E-05 4.5E-10 77.4 11.4 153 189-358 48-235 (319)
20 COG3633 SstT Na+/serine sympor 97.4 0.0031 6.8E-08 60.8 13.5 238 84-349 9-308 (407)
21 PF03605 DcuA_DcuB: Anaerobic 59.7 1.3E+02 0.0027 30.5 11.3 152 190-364 40-198 (364)
22 PF03390 2HCT: 2-hydroxycarbox 54.3 2.3E+02 0.0051 29.2 12.5 95 139-240 98-193 (414)
23 PF03616 Glt_symporter: Sodium 35.8 4.7E+02 0.01 26.3 13.8 19 91-109 246-264 (368)
24 TIGR02865 spore_II_E stage II 33.7 7.1E+02 0.015 27.7 15.0 31 119-149 19-52 (764)
25 KOG1965|consensus 31.8 4.9E+02 0.011 28.1 10.9 275 38-361 30-314 (575)
26 TIGR00210 gltS sodium--glutama 28.9 6.4E+02 0.014 25.8 13.0 127 90-240 243-375 (398)
27 COG1811 Uncharacterized membra 27.2 5.4E+02 0.012 24.3 11.5 129 47-179 5-150 (228)
28 PF04474 DUF554: Protein of un 24.6 6E+02 0.013 24.0 13.0 123 47-173 4-147 (226)
29 PF04210 MtrG: Tetrahydrometha 24.0 59 0.0013 24.9 1.9 32 5-46 17-48 (70)
30 PF03176 MMPL: MMPL family; I 20.7 4.1E+02 0.009 25.6 7.8 33 160-192 274-306 (333)
31 TIGR00819 ydaH p-Aminobenzoyl- 20.3 1.1E+03 0.023 25.2 12.8 87 217-313 415-504 (513)
No 1
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=100.00 E-value=2.7e-69 Score=538.62 Aligned_cols=317 Identities=25% Similarity=0.363 Sum_probs=297.8
Q ss_pred ehhhc--ccc-chhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhc-----ccCCC------------hhhHHHHH
Q psy2489 22 SSKMS--ADL-DEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILG-----TLGPK------------KKTVLEFF 79 (369)
Q Consensus 22 ~s~~~--~~~-~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~-----~~~p~------------~~~il~~i 79 (369)
+|.++ +++ |.| |+||+|+|++. +++|++|+ .+|++++|++| |.++. .+++.|++
T Consensus 56 ~tlv~gIa~~~~~k---~~gr~g~ktl~yf~~tt~~A~-~iGl~~~~~~~Pg~g~~~~~~~~~~~~~~~~~~~~~l~~ii 131 (415)
T COG1301 56 FTLVLGIASLGDLK---KLGRLGGKTLIYFLVTTTLAI-AIGLVVANVLQPGAGINIDPATLDTGAESEVSILDFLLDII 131 (415)
T ss_pred HHHHHHHHhhhchH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCcCccccCCcccccchHHHHHHhhc
Confidence 44554 444 455 89999999999 99999999 99999999988 33321 26889999
Q ss_pred hhhh-hccCCcchHHHHHHHHHHHhHhcccCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy2489 80 QTVY-TIIDGTATLGIIFFCIVFGAILGTLGPKKKT-VLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTV 157 (369)
Q Consensus 80 p~n~-~a~~~~~iL~vlvfail~Gial~~~g~~~~~-l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~ 157 (369)
|+|+ +++++||+||+++||+++|+++..+++++++ +.+++|+++++++|+++|+|+++|+|+|++++.++++ +|.++
T Consensus 132 P~ni~~a~a~g~vLqil~fail~G~al~~~~~~~~~~v~~~~~~~~~~~~~v~~~vm~laPigvf~~~a~~v~~-~G~~~ 210 (415)
T COG1301 132 PTNIFGALAEGNVLQILFFAILFGLALAALGEKGKPPVENLFESLSEAMFKVTNFVMRLAPIGVFGLMAFTVAK-YGFGS 210 (415)
T ss_pred CCChHhHhcCCChHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcHHH
Confidence 9999 9999999999999999999999999998876 7799999999999999999999999999999999998 57888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhhe
Q psy2489 158 TMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRF 237 (369)
Q Consensus 158 l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ 237 (369)
+ .++++|++++|+++++|+++++|.+.+.+.|+||++++|+++|++++||+|+||++++|++||++||++|++|+++++
T Consensus 211 L-~~l~~~v~~~~~~~~l~~~vvl~~~~~~~~g~s~~~~~r~~~~~~~~Af~T~SS~atLPv~m~~~e~~~Gv~~~i~~f 289 (415)
T COG1301 211 L-LSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSF 289 (415)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhcCCCcceeEE
Confidence 8 899999999999999999999999988888999999999999999999999999999999999999889999999999
Q ss_pred eeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHhccCchhh
Q psy2489 238 VLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKY 313 (369)
Q Consensus 238 ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~~~g~P~~~ 313 (369)
++|+|||+|||||++|.+ ++++|+||. ||.|++++||+ .++++|+|+||+||+++++++.+++.+|+|.++
T Consensus 290 vvPlG~t~nldGtaiy~~--~a~~FIAq~---~g~~Ls~~~~l~~~~~~~l~S~G~AGVpg~~~v~l~~~L~~vglp~~g 364 (415)
T COG1301 290 VVPLGYTFNLDGTAIYQT--LAALFIAQA---YGIPLSLGQQLTLLLVAMLASKGAAGVPGGGLVVLAATLSSVGLPLEG 364 (415)
T ss_pred EeecCceeCCcchHHHHH--HHHHHHHHH---hCCCCCHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999 999999999 99999999998 789999999999999999999999999999999
Q ss_pred hhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhcc
Q psy2489 314 YVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRH 355 (369)
Q Consensus 314 ~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~~ 355 (369)
.+ ++++ +||++|++||++|++||+++|.+++||+++
T Consensus 365 -~a----Li~g-id~~ld~~rT~~Nv~Gd~~~~~iva~~e~~ 400 (415)
T COG1301 365 -LA----LILG-IDRFLDMARTATNVTGDAVATVVVAKWEGE 400 (415)
T ss_pred -HH----HHHH-HHHHHHHHHHHHHHHhhHHHHHHhhhhccc
Confidence 89 9999 999999999999999999999999999995
No 2
>KOG3787|consensus
Probab=100.00 E-value=1.4e-70 Score=538.03 Aligned_cols=329 Identities=34% Similarity=0.611 Sum_probs=307.0
Q ss_pred eeeehhhc--cccchhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhcccCCC-----------------h----h
Q psy2489 19 SFVSSKMS--ADLDEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILGTLGPK-----------------K----K 73 (369)
Q Consensus 19 ~~~~s~~~--~~~~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~~~~p~-----------------~----~ 73 (369)
+++||++| |++|.| ..||+|.+|+. .++|.+|. .+|+.++.++|.=+|+ . |
T Consensus 67 LI~SSlisgla~LDa~---~sGrlg~~av~YY~~TT~~Av-~lGI~lV~~IhPG~~~~~~~~~~~~~~~~~vs~~DtfLD 142 (507)
T KOG3787|consen 67 LIVSSLISGLASLDAK---ASGRLGMRAVVYYMSTTIIAV-ILGIALVLIIHPGDPTKKNELGREGLIDSNVSTLDTFLD 142 (507)
T ss_pred HHHHHHHHHHhhcCcc---ccccchHHHHHHHHHHHHHHH-HHHHheeEEecCCChhhhcccCcccccccccchHHHHHH
Confidence 36799999 999999 59999999999 89999999 9999999997611111 0 5
Q ss_pred hHHHHHhhhh-hc--------------------------------cCCcchHHHHHHHHHHHhHhcccCCchhHHHHHHH
Q psy2489 74 TVLEFFQTVY-TI--------------------------------IDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQ 120 (369)
Q Consensus 74 ~il~~ip~n~-~a--------------------------------~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~ 120 (369)
-+.|+||+|. +| -.+.|+|++++|++.+|+.++++|++++.+.+|++
T Consensus 143 LiRNmFPeNlvqAtf~q~~T~y~~~~~~~~~~~t~~~~~~~~~~~~~GmNvLGlVvF~~~fGivig~lG~~g~~lv~FF~ 222 (507)
T KOG3787|consen 143 LIRNMFPENLVQATFQQYQTKYKPVTKASPGNATEEALPKGVPGYTDGMNVLGLVVFCIVFGIVIGKLGEKGQVLVDFFN 222 (507)
T ss_pred HHHhhCcHHHHHHHHHHHeeEEEeecccCCCCccccccccCccccccCccchhHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 5667888886 11 13679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q psy2489 121 TVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNF 200 (369)
Q Consensus 121 ~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i 200 (369)
.++++.+|++.|+||++|+|+.+++|+.+.++.|++...+.|++|++++.++..+|.++++|++++.++|+||+++++.+
T Consensus 223 ~L~e~iMklV~~iMWy~PvGI~fLIagkIlem~Dl~~~~~~Lg~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP~~f~~Gm 302 (507)
T KOG3787|consen 223 SLNEAIMKLVSWIMWYSPVGILFLIAGKILEMEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFIAGL 302 (507)
T ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEccChHHHHHHH
Confidence 99999999999999999999999999999999999888789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH
Q psy2489 201 FPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS 280 (369)
Q Consensus 201 ~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~ 280 (369)
.+++++||+|+||.+++|.++||+||++|++|++++||+|+|+++||||||+|.+ ++++||||. +|.+++++|++
T Consensus 303 ~Qal~TA~gTsSSsATLPitfkCleEn~gVD~RiTRFVLPvGATINMDGtALYEA--VAaIFIAQl---n~~~Ls~gqiv 377 (507)
T KOG3787|consen 303 LQALATAFGTASSSATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEA--VAAIFIAQL---NNVELSFGQIV 377 (507)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHhCCCCcceeeeecccCceecCChHHHHHH--HHHHHHHHH---hCceeccceEE
Confidence 9999999999999999999999999999999999999999999999999999999 999999999 99999999998
Q ss_pred ----HHHHHHHHhhhhhHHHHHHHHHHHHhccCchhhhhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhccc
Q psy2489 281 ----KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRHE 356 (369)
Q Consensus 281 ----~~~l~s~gaagvpg~~~v~l~~vl~~~g~P~~~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~~~ 356 (369)
.++++|+|++|||++|++++.++|+++|+|.+. +. |+++ +||++||.||++||.||+.+|.+++|.++++
T Consensus 378 TIsiTAT~ASIGaAgiP~AGLVTm~iVLtaVgLP~~D-is----Li~a-VDWllDR~RT~vNVlGDa~gagiv~hl~~~~ 451 (507)
T KOG3787|consen 378 TISITATAASIGAAGVPQAGLVTMLIVLTAVGLPTKD-IS----LIFA-VDWLLDRLRTTVNVLGDALGAGIVEHLSKKE 451 (507)
T ss_pred EEEeehhhhhccccCCCccchhhhhhhhhhcCCCccc-ee----EEee-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999 89 9999 9999999999999999999999999999999
Q ss_pred cccccC
Q psy2489 357 LQDSVD 362 (369)
Q Consensus 357 l~~~~~ 362 (369)
++++.+
T Consensus 452 l~~~~~ 457 (507)
T KOG3787|consen 452 LDAADA 457 (507)
T ss_pred hhhcch
Confidence 766544
No 3
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=100.00 E-value=7.9e-63 Score=497.38 Aligned_cols=329 Identities=18% Similarity=0.291 Sum_probs=300.8
Q ss_pred eehhhc--cccchhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhc-----ccC---------------CC-----
Q psy2489 21 VSSKMS--ADLDEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILG-----TLG---------------PK----- 71 (369)
Q Consensus 21 ~~s~~~--~~~~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~-----~~~---------------p~----- 71 (369)
++|.++ +++++.. |.||+|+|++. ..+|++|. .+|+.++++++ +.+ ++
T Consensus 53 f~sii~gI~~l~~~~--~~grig~~~~~~f~~tt~ia~-~igl~~~~~~~pg~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (421)
T PRK13027 53 FCVVVSGIAGAGDLK--KVGRVGLKAVIYFEVMTTIAL-VIGLVLAYLTGPGVGMNIDLRSLDAASLAGYAKNAQSLKGT 129 (421)
T ss_pred HHHHHHHHHhCccch--hcchhHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCccccccccchhhhhhhcccccccccH
Confidence 367776 5564433 89999999999 78999999 99999999987 221 00
Q ss_pred hhhHHHHHhhhh-hccCCcchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2489 72 KKTVLEFFQTVY-TIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLI 150 (369)
Q Consensus 72 ~~~il~~ip~n~-~a~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~ 150 (369)
.+++.+++|+|+ ++++++|++|+++||+++|+++.+.+|+++++.++++.++++++|+++|+||++|+|+|+++|..++
T Consensus 130 ~~~l~~~iP~Nif~ala~gn~L~vIvFAi~~GiAl~~~~e~~~~l~~~~~~~~~~~~kii~~im~laPigVfaliA~~~~ 209 (421)
T PRK13027 130 AGFLLKLIPTTAVDAFAKGDILQVLLFSVLFGSALSLLGERAKRVNRLIDELSHVLFRIMGFIIKLAPLGVLGAIAFTTG 209 (421)
T ss_pred HHHHHHHCccchHHHhhcCChHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 168889999999 8999999999999999999999998998999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHhhccc
Q psy2489 151 SIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKVKM 230 (369)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv 230 (369)
+ +|.+.+ .++++|++++|++++++.++++|.+.+ ++|.||++++|+++|++++||+|+||.+++|.++||+| ++|+
T Consensus 210 ~-~g~~~l-~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~~~p~~~~k~~~~~~~~Af~T~SS~AtLPv~~~~~e-~lgv 285 (421)
T PRK13027 210 K-YGVGSL-KQLGMLVAVFYLTCFVFVVVVLGAVMR-LAGFSVFKLIRYLREELLIVLGTASSDAVLPQVMRKLE-HMGI 285 (421)
T ss_pred H-cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH-HcCC
Confidence 8 578777 899999999999999999988988775 79999999999999999999999999999999999998 5999
Q ss_pred chhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy2489 231 SQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLFT 306 (369)
Q Consensus 231 ~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~~ 306 (369)
+++++++++|+|+++|||||++|.+ ++++|+||. ||+|+++++++ .++++|+|++|+||++++++..++..
T Consensus 286 ~~~ia~fvlPLGatinm~G~aiy~~--~~~~Fiaq~---~G~~l~~~~~~~i~~~~~las~g~aGVPg~~~v~l~~vl~~ 360 (421)
T PRK13027 286 KDSTVGLVIPTGYSFNLDGFSIYLT--LAAVFIAQA---TNTPLSMHDLITILLVSLVTSKGAHGIPGSAIVILAATLSA 360 (421)
T ss_pred CccceeEEeecccccCCCccHHHHH--HHHHHHHHH---HCCCCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHh
Confidence 9999999999999999999999999 999999999 99999999988 78999999999999999999999999
Q ss_pred cc-CchhhhhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhccccccccCccccCC
Q psy2489 307 RK-NPYKYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRHELQDSVDDYVLFP 368 (369)
Q Consensus 307 ~g-~P~~~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~~~l~~~~~~~~~~~ 368 (369)
+| +|.+. ++ ++++ +||++||+||++||+||++++.+++||++ ++|+++.|..+..
T Consensus 361 ~g~lP~~~-i~----ll~~-iD~i~Dm~rT~~NV~gd~~~a~iv~~~~~-~~~~~~~~~~~~~ 416 (421)
T PRK13027 361 IPAIPVLG-LV----LILP-VDWFMGIARALTNLIGNCVATVVVAVWEN-DIDRARAQAVLNG 416 (421)
T ss_pred cCCCCHhH-Hh----hhee-hHhhhhhhHHHHhhhhhHHHHHHHHHhhc-ccchHHHHHHhcc
Confidence 95 99998 88 9999 99999999999999999999999999998 6787777665543
No 4
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=100.00 E-value=6.9e-63 Score=499.90 Aligned_cols=325 Identities=19% Similarity=0.312 Sum_probs=295.8
Q ss_pred eeehhhc--cccchhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhc-----ccCC-----------------C--
Q psy2489 20 FVSSKMS--ADLDEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILG-----TLGP-----------------K-- 71 (369)
Q Consensus 20 ~~~s~~~--~~~~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~-----~~~p-----------------~-- 71 (369)
+++|.++ +++++.. |.||+|.|++. ..+|++|. .+|+++++++| +.+. .
T Consensus 60 Vf~Sii~gI~~l~~~~--~lg~ig~~~~~~f~~tt~ia~-~igl~~~~i~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (437)
T PRK11283 60 VISTLIVGIAGVGDAK--QLGRIGAKTIIYFEVITTVAI-ILGITLANVFQPGAGIDMSQLATVDISKYQSTTEEVQSHS 136 (437)
T ss_pred HHHHHHHHHHhcccch--hcchhhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCcccccchhhhhhhhccccccccccc
Confidence 3477776 5554332 89999999999 88889999 99999999988 1110 0
Q ss_pred ---hhhHHHHHhhhh-hccCCcchHHHHHHHHHHHhHhcccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2489 72 ---KKTVLEFFQTVY-TIIDGTATLGIIFFCIVFGAILGTLGPK-KKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVIT 146 (369)
Q Consensus 72 ---~~~il~~ip~n~-~a~~~~~iL~vlvfail~Gial~~~g~~-~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia 146 (369)
.+++.+++|+|+ ++++++|++|+++||+++|+++..++++ ++++.++++.++++++|+++|+||++|+|+|+++|
T Consensus 137 ~~~~~~i~~~iP~N~~~ala~gn~L~vIiFai~~GiAl~~~~~~~~~~l~~~~~~~~~~~~kii~~im~~aPiGVfaliA 216 (437)
T PRK11283 137 HGLMGTILSLIPTNIFASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTVFRSVSETMFKVTHMVMRYAPVGVFALIA 216 (437)
T ss_pred ccHHHHHHHHcCCChHHHHhcCChHHHHHHHHHHHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 157889999999 8999999999999999999999988754 68899999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHh
Q psy2489 147 SKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDE 226 (369)
Q Consensus 147 ~~i~~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~ 226 (369)
..+++ +|.+.+ .++++|++++|+++++|.++++|.+++ ++|+||++++|+++|++++||+|+||.+++|.++||+|
T Consensus 217 ~~~~~-~g~~~l-~~l~~~l~~~~~~~~l~~~vv~~~i~~-~~~~np~~~~k~~~~~~~~AfsT~SS~atLP~~~~~~e- 292 (437)
T PRK11283 217 VTVAN-FGFASL-WPLAKLVLLVYFAILFFALVVLGIVAR-LCGLSIWILIRILKDELILAYSTASSETVLPRIIEKME- 292 (437)
T ss_pred HHHHh-cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHheccchhhhHHHHHHHHH-
Confidence 99998 588888 789999999999999999999987665 68999999999999999999999999999999999998
Q ss_pred hcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHH
Q psy2489 227 KVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIY 302 (369)
Q Consensus 227 ~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~ 302 (369)
++|++|+++++++|+|+++|||||++|.+ ++++|+||+ ||+|++++|++ .++++|+|++|+||++++++..
T Consensus 293 ~lGv~~~ia~fvlPLGat~nmdG~aly~~--l~~iFiaq~---~Gi~l~~~~~~~i~~~~~l~S~G~agVPg~g~v~~~~ 367 (437)
T PRK11283 293 AYGAPKSITSFVVPTGYSFNLDGSTLYQS--IAAIFIAQL---YGIDLSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLA 367 (437)
T ss_pred HcCcCccceeEEeecccccCCCccHHHHH--HHHHHHHHH---HCCCCCHHHHHHHHHHHHHHhhccCCCchHHHHHHHH
Confidence 59999999999999999999999999999 999999999 99999999988 7889999999999999999999
Q ss_pred HHHhccCchhhhhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhccccccccCc
Q psy2489 303 FLFTRKNPYKYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRHELQDSVDD 363 (369)
Q Consensus 303 vl~~~g~P~~~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~~~l~~~~~~ 363 (369)
+++.+|+|.|. ++ ++++ +||++||+||++||+||++++.+++||++ ++|++++|
T Consensus 368 vl~~~GlP~e~-i~----ll~~-iD~i~Dm~rT~~NV~Gd~~~a~iv~~~~~-~~~~~~~~ 421 (437)
T PRK11283 368 TLGSVGIPLEG-LA----FIAG-VDRILDMARTALNVVGNALAVLVIAKWEH-KFDRKKAL 421 (437)
T ss_pred HHHHcCCCHHH-HH----HHHH-HHHHhhhhHHHHhhhhhHHHHHHHHHHhc-cccHHHHH
Confidence 99999999999 88 9999 99999999999999999999999999997 66666554
No 5
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=100.00 E-value=2.5e-62 Score=494.63 Aligned_cols=324 Identities=19% Similarity=0.301 Sum_probs=297.4
Q ss_pred eehhhc--cccchhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhc-----ccCC---------------C----h
Q psy2489 21 VSSKMS--ADLDEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILG-----TLGP---------------K----K 72 (369)
Q Consensus 21 ~~s~~~--~~~~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~-----~~~p---------------~----~ 72 (369)
++|.++ +++++.. |.||+|+|++. ..+|++|. .+|+++++++| +.++ + .
T Consensus 54 f~Sii~gI~~l~~~~--~lg~i~~~~~~~f~~tt~iA~-~lgl~~~~l~~pg~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (428)
T PRK01663 54 FCTVVTGIAGMGDMK--KVGRVGGKALLYFEIVSTIAL-IIGLIVVNVVQPGAGMNIDPATLDAKAVAQYAAQAHEQGTV 130 (428)
T ss_pred HHHHHHHHHhCcccc--ccchhHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCcCcccccccchhhcccccccccccHH
Confidence 467776 6664433 89999999999 88999999 99999999987 2210 0 1
Q ss_pred hhHHHHHhhhh-hccCCcchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2489 73 KTVLEFFQTVY-TIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLIS 151 (369)
Q Consensus 73 ~~il~~ip~n~-~a~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~ 151 (369)
+++.+++|+|+ ++++++|++|+++||+++|+++.+.+|+++++.++++.++++++|+++|+||++|+|+|+++|..+++
T Consensus 131 ~~i~~~iP~Nif~ala~gnvL~vIvFai~~GiAl~~~~e~~~~l~~~~~~~~~vi~kii~~im~laPiGVfaliA~~v~~ 210 (428)
T PRK01663 131 DFLMDIIPTTVVGAFASGDILQVLLFAVLFGFALARLGEKGKPVFDFIESLSHVLFGIVNMIMKLAPIGAFGAMAFTIGK 210 (428)
T ss_pred HHHHHHCCCchHHHHhcCChHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999 89999999999999999999999988989999999999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHhhcccc
Q psy2489 152 IEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKVKMS 231 (369)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~ 231 (369)
+|.+.+ .++++|++++|+++++|.++++|.+++ ++|.||++++|+++|++++||+|+||.+++|.++||+| ++|++
T Consensus 211 -~g~~~l-~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~~~p~~f~k~~~~~~~~AfsT~SS~atLPv~i~~~e-~lgv~ 286 (428)
T PRK01663 211 -YGVGSL-VQLGQLIGCFYITCILFVFVVLGAIAR-LTGFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKME-KLGCK 286 (428)
T ss_pred -cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhecccHHhHHHHHHHHHH-HcCCC
Confidence 478887 899999999999999999999998775 68999999999999999999999999999999999998 59999
Q ss_pred hhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHhc
Q psy2489 232 QQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLFTR 307 (369)
Q Consensus 232 ~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~~~ 307 (369)
++++++++|+|+++||||+++|.+ ++++|+||+ ||+|++++|++ .++++|+|++|+||++++++..++..+
T Consensus 287 ~~ia~fvlPLGatinm~G~aly~~--~~~iFia~~---~Gi~l~~~~~~~i~l~~~l~s~G~agVPg~~~v~l~~vl~~~ 361 (428)
T PRK01663 287 KSVVGLVIPTGYSFNLDGTSIYLT--MAAVFIAQA---TNTPLSIGHQITLLAVLLLTSKGAAGVTGSGFIVLAATLSAV 361 (428)
T ss_pred ccceeEEeecccccCCCccHHHHH--HHHHHHHHH---HCCCCCHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHc
Confidence 999999999999999999999999 999999999 99999999988 689999999999999999999999999
Q ss_pred c-CchhhhhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhccccccccCc
Q psy2489 308 K-NPYKYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRHELQDSVDD 363 (369)
Q Consensus 308 g-~P~~~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~~~l~~~~~~ 363 (369)
| +|.|. ++ ++++ +||++||+||++||.||++++.+++|+++ ++||++.|
T Consensus 362 g~lP~~~-i~----ll~~-iD~i~Dm~rT~~NV~gd~~~a~iv~~~~~-~~~~~~~~ 411 (428)
T PRK01663 362 PHIPVAG-LA----LILG-IDRFMSEARALTNLIGNGVATVVVAKWEK-ELDREKLD 411 (428)
T ss_pred cCCCHhH-HH----Hhhe-ehhhcchhhHHHHhhhhHHHHHHHHHHhc-cccHHHHH
Confidence 7 99998 88 9999 99999999999999999999999999997 56665433
No 6
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=100.00 E-value=2.1e-59 Score=469.77 Aligned_cols=319 Identities=28% Similarity=0.434 Sum_probs=279.4
Q ss_pred eeehhhccccchhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhccc--------CCC----------hhhHHHHH
Q psy2489 20 FVSSKMSADLDEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILGTL--------GPK----------KKTVLEFF 79 (369)
Q Consensus 20 ~~~s~~~~~~~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~~~--------~p~----------~~~il~~i 79 (369)
+++|.+++-.+.++..|.||+|.|++. ..+|.+|. .+|++++++++.- +.. .|++.+++
T Consensus 47 Vf~sii~gi~~l~~~~~~g~i~~~~i~~~~~~t~~A~-~ig~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (390)
T PF00375_consen 47 VFSSIISGIASLGDAKKLGRIGGRTILYFLLTTLLAA-AIGLLVALLFQPGASGVRASSAVSSISSSESPSLLDFLRNLI 125 (390)
T ss_dssp HHHHHHHHCHSHT-TTSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-SS-TTS-SSTTSS--------SSHHHHHCTS
T ss_pred HHHHHHhhccCCccccccccHHHHHHHHHHHHHHHHH-HHHHHHheeeCCCccccccccccccccccccccchhhhcccc
Confidence 347777733333323389999999999 88888888 9999999997721 000 17889999
Q ss_pred hhhh-hccCCcchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy2489 80 QTVY-TIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVT 158 (369)
Q Consensus 80 p~n~-~a~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l 158 (369)
|+|+ ++++++|++|+++||+++|+++.+.++++|++.+++++++++++|+++|+||++|+|+|+++++.+++ ++.+.+
T Consensus 126 P~Ni~~a~~~~~~L~ivvfai~~G~al~~~~~~~~~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~-~~~~~l 204 (390)
T PF00375_consen 126 PSNIFEAFANGNILGIVVFAILFGVALGRLGEKGKPLIDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIAT-QGLSIL 204 (390)
T ss_dssp -SSHHHHHHSS-HHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHS-SCCGHH
T ss_pred CCcHHHhhhhcccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhhH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999998 688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhhee
Q psy2489 159 MRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFV 238 (369)
Q Consensus 159 ~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~V 238 (369)
..+++|+++.+.++++|.++++|.+++.++|+||++++|+++|++++||+|+||.+++|.++|++||++|++|++++++
T Consensus 205 -~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~Af~T~SS~atlP~~~~~~~~~~gv~~~i~~fv 283 (390)
T PF00375_consen 205 -GALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLTAFSTSSSAATLPVTIECLEENLGVSRSIASFV 283 (390)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHHHHHHT-TTTSHHHHHHHHHT-TT--HHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHhcCCCcccceee
Confidence 7999999999999999999999999998999999999999999999999999999999999999999899999999999
Q ss_pred eccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHhccCchhhh
Q psy2489 239 LPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYY 314 (369)
Q Consensus 239 iP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~~~g~P~~~~ 314 (369)
+|+|+++||||+++|.+ ++++|++|+ +|+|+|++|++ .++++|+|++|+||++++++..+++.+|+|.|.
T Consensus 284 ~Plg~t~n~~G~a~~~~--~~~iFia~~---~gi~l~~~~~~~i~~~~~l~s~g~~gvPg~~~~~~~~~l~~~glp~~~- 357 (390)
T PF00375_consen 284 LPLGATINMDGTALYIA--IAAIFIAQL---YGIDLSFGQIITIVLLATLASFGAAGVPGGGLVILAIVLSALGLPVEA- 357 (390)
T ss_dssp HHHHTTS--HHHHHHHH--HHHHHHHHH---HT--TTTTTHHHHHHHHHHHHHHSSSSSSHHHHHHHHHHHTTT--HHH-
T ss_pred echhccccCCccchHHH--HHHHHhhhc---cCceechhHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHhccHhh-
Confidence 99999999999999999 999999999 99999999988 788999999999999999999999999999999
Q ss_pred hhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhh
Q psy2489 315 VNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHL 352 (369)
Q Consensus 315 ~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~ 352 (369)
.+ ++++ +||++||+||++||.||++++.+++||
T Consensus 358 ~~----li~~-vd~l~D~~rT~~NV~gd~~~a~iv~k~ 390 (390)
T PF00375_consen 358 IA----LILA-VDWLLDMFRTALNVTGDMAAAAIVAKW 390 (390)
T ss_dssp HH----HHHT-THHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hH----HHhh-HHHHhhHhHHHHHHHHHHHHHHHHcCC
Confidence 88 9999 999999999999999999999999998
No 7
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=100.00 E-value=4.4e-56 Score=446.01 Aligned_cols=309 Identities=19% Similarity=0.240 Sum_probs=271.6
Q ss_pred eehhhc--cccchhhhhhhcchhHH-HHH--HHHHHHHHHHHHHHHHHhhc---ccCC--C--------h---hhHHHHH
Q psy2489 21 VSSKMS--ADLDEKVEMKEKDMEFR-ELL--DGTATLGIIFFCIVFGAILG---TLGP--K--------K---KTVLEFF 79 (369)
Q Consensus 21 ~~s~~~--~~~~~~~~~~~g~~g~~-al~--~~~tt~al~~~glv~~~~~~---~~~p--~--------~---~~il~~i 79 (369)
++|.++ +++++. ++.|+| .+. ..+|.+|. .+|++++++++ +.+. + . +.+.+.+
T Consensus 61 f~sIv~gI~~l~~~-----~~~~~~~~i~~~~~tt~ia~-~~gl~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 134 (402)
T PRK13628 61 FVLVMASIANHKKG-----QKTNIRPILVLYLLGTFLAA-LVAVVASFLFPSTLVLVASAADISPPQGIVEVLKTLLLSL 134 (402)
T ss_pred HHHHHHHHHhCccc-----ccccHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcCCcccccccccCCcchHHHHHHHHHHC
Confidence 466665 444332 334455 455 66677777 89999999987 2110 0 0 2346778
Q ss_pred hhhh-hccCCcchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy2489 80 QTVY-TIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVT 158 (369)
Q Consensus 80 p~n~-~a~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l 158 (369)
|+|+ ++++++|++|+++||+++|+++.+.+| +..++++.++++++|+++|+||++|+|+|+++|.++++ +|.+.+
T Consensus 135 ~~N~~~al~~gniL~vIvFai~~GiAl~~~~~---~~~~~~~~~~~~~~kii~~Im~laPiGVfaliA~~v~~-~g~~~l 210 (402)
T PRK13628 135 VDNPINALLNANYIGILAWAIGLGLALRHASD---TTKNVVNDLSEAVSQIVKWVIRFAPIGIFGLVASTLAE-TGFSAL 210 (402)
T ss_pred cCCHHHHhHcCCHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHH
Confidence 8998 899999999999999999999987754 35689999999999999999999999999999999998 588888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHhHHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhhe
Q psy2489 159 MRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKY-YVNFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRF 237 (369)
Q Consensus 159 ~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~-l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ 237 (369)
.++++|+++.|+++++|.++++|.+++..+|+||+++ +|+++|++++||+|+||++++|.++||+| ++|++|+++++
T Consensus 211 -~~l~~~v~~~~~~~~i~~~vv~~~i~~~~~~~~p~~~~~k~~~~~~~~AfsT~SS~AtLPv~m~~~~-~lGv~~~i~~f 288 (402)
T PRK13628 211 -AGYAQLLAVLVGCMLFVALVVNPLIVFWKIRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMALCE-KLGLDEDTYSV 288 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHheehhHHhHHHHHHHHHH-HcCcCccceeE
Confidence 7999999999999999999999998887899999998 89999999999999999999999999998 69999999999
Q ss_pred eeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHhccCchh-
Q psy2489 238 VLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYK- 312 (369)
Q Consensus 238 ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~~~g~P~~- 312 (369)
++|+|+++|||||++|.+ ++++|+||+ ||+|++++|++ .++++|+|++|+||++++++..+++.+|+|.|
T Consensus 289 vlPLGat~nmdG~aly~~--i~~iFiaq~---~Gi~l~~~~~~~i~~~~~l~S~G~agVPg~~lv~l~~vl~~~glP~e~ 363 (402)
T PRK13628 289 SIPLGATINMAGAAITIT--VLTLAAVHT---LGIPVDLPTALLLSVVAAISACGASGVAGGSLLLIPLACSLFGISNDI 363 (402)
T ss_pred EeecccccCCCccHHHHH--HHHHHHHHH---hCCCCCHHHHHHHHHHHHHHhCCcCCCCchHHHHHHHHHHhcCCCchh
Confidence 999999999999999999 999999999 99999999988 78999999999999999999999999999988
Q ss_pred -----hhhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhc
Q psy2489 313 -----YYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSR 354 (369)
Q Consensus 313 -----~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~ 354 (369)
. ++ ++++ +| .||+||++||+||.+++.+++||++
T Consensus 364 ~~~~~~-i~----lil~-v~--~Dm~rT~~NV~Gd~~~a~iv~~~~~ 402 (402)
T PRK13628 364 AMQVVA-VG----FIIG-VL--QDSAETALNSSTDVLFTAAACQAED 402 (402)
T ss_pred hhhhhh-HH----HHHH-HH--hccchHHHhhhhHHHHHHHHHhccC
Confidence 4 56 7888 75 7999999999999999999999874
No 8
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=100.00 E-value=1.4e-53 Score=414.77 Aligned_cols=292 Identities=16% Similarity=0.219 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHHHhhc---cc-------CC-C--hhhHH---HHHhhhh-hccCCcchHHHHHHHHHHHhHhcccCCc
Q psy2489 49 TATLGIIFFCIVFGAILG---TL-------GP-K--KKTVL---EFFQTVY-TIIDGTATLGIIFFCIVFGAILGTLGPK 111 (369)
Q Consensus 49 ~tt~al~~~glv~~~~~~---~~-------~p-~--~~~il---~~ip~n~-~a~~~~~iL~vlvfail~Gial~~~g~~ 111 (369)
++.+|- ...+++.++++ +. .+ + .++.. +.+|+|+ ++++++|+||+++||+++|+++...
T Consensus 3 t~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~N~~~ala~gn~L~iIvFAil~Gial~~~--- 78 (319)
T PRK14695 3 GTFAAA-LVAVLASFIVPIEITLNSANTEIAPPDGIGQVLSNLLLKLVDSPVNALLTANYIGILSWAVIFGIAMREA--- 78 (319)
T ss_pred HHHHHH-HHHHHHHHhCCcchhccccccccCCCCcHHHHHHHHHHHccCCHHHHhHcCCcHHHHHHHHHHHHHHHHc---
Confidence 455555 56777777765 11 11 1 13444 4459999 8999999999999999999999753
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy2489 112 KKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRK 191 (369)
Q Consensus 112 ~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~ 191 (369)
+|+..++++.++++++|+++|+||++|+|+|+++|..+++ +|.+.+ .++++|+++.|.++++|.++++|.+++...|+
T Consensus 79 ~~~~~~~~~~l~~v~~kiv~~Vm~~aPiGVfaliA~~v~~-~G~~~l-~~l~~~v~~~~~~~~i~~~vv~~~~~~~~~~~ 156 (319)
T PRK14695 79 SKNSKELLKTIADVTSKIVEWIINLAPFGILGLVFKTISD-KGVGSL-ANYGILLVLLVTTMLFVAPVVNPLIAFFFMRR 156 (319)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4677889999999999999999999999999999999998 588888 79999999999999999999999888778999
Q ss_pred CHHHHH-HHhHHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhcc
Q psy2489 192 NPYKYY-VNFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIE 270 (369)
Q Consensus 192 n~~~~l-~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~ 270 (369)
||++++ |++++++++||+|+||++++|.++|++| ++|++|+++++++|+|+++||||+++|.+ ++++|++|+ |
T Consensus 157 ~p~~f~~~~~~~~~~~AfsT~SS~AtLP~~~~~~e-~lGv~~~ia~fvlPLGatinmdG~aiy~~--~~~iFiaq~---~ 230 (319)
T PRK14695 157 NPYPLVWNCLRVSGVTAFFTRSSATNIPVNMKLCH-DLGLNPDTYSVSIPLGSTINMAGVAITIN--LLTLVTVNT---L 230 (319)
T ss_pred CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-HcCcCcccEeeeeccchhhCCCchHHHHH--HHHHHHHHH---h
Confidence 999996 5699999999999999999999999997 69999999999999999999999999999 999999999 9
Q ss_pred CccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHhccCchhhhhhhhchhhhhhhhhhccchhhhhhcchhHHHH
Q psy2489 271 DMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAV 346 (369)
Q Consensus 271 g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~~~g~P~~~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t 346 (369)
|+|+|++|++ .++++|+|++|+||++++++..+++.+|+|.|. ......+.+. +++++||+||++||.||++++
T Consensus 231 Gi~ls~~~~~~i~l~~~l~S~G~aGVPg~glv~l~~vls~~GlP~e~-~~~~~~i~l~-l~~i~Dm~rT~~NV~Gd~~~a 308 (319)
T PRK14695 231 GIPVDFATAFVLSVVAAISACGASGIAGGSLLLIPVACSLFGISNDI-AIQIVGVGFV-IGVIQDSCETALNSSTDVLFT 308 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHhCCCCchh-hhhHHHHHHH-HHHHhhhhhHHHhhcchHHHH
Confidence 9999999998 789999999999999999999999999999882 1100013333 456999999999999999999
Q ss_pred HHHHhhhc
Q psy2489 347 AVVDHLSR 354 (369)
Q Consensus 347 ~~va~~~~ 354 (369)
.+++..++
T Consensus 309 ~ii~~~~g 316 (319)
T PRK14695 309 AVAEYAAT 316 (319)
T ss_pred HHHHHHhc
Confidence 99996555
No 9
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=100.00 E-value=3e-40 Score=317.75 Aligned_cols=325 Identities=19% Similarity=0.298 Sum_probs=278.5
Q ss_pred ehhhc--cccchhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhc----cc--CCC--------------------
Q psy2489 22 SSKMS--ADLDEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILG----TL--GPK-------------------- 71 (369)
Q Consensus 22 ~s~~~--~~~~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~----~~--~p~-------------------- 71 (369)
-|..| +-+|+.. |.||+.+..+. ..+|.+|- .+|+..++.++ .+ ++.
T Consensus 87 iSIlsAi~kl~~~~--~lgKis~l~i~~ll~ttaIAA-~iGi~~~~~fgLtA~~l~~G~~e~a~~~~i~~~~~~~~~~ti 163 (458)
T COG1823 87 ISILSAIAKLDNAS--KLGKISLLTIGTLLFTTAIAA-LIGILVALLFGLTAEGLVQGDAETARISEIQTYVGKVADLTI 163 (458)
T ss_pred HHHHHHHHHHHhcc--chhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcHHHHhhCcHHHHHHHHHHHHhhhhhhcch
Confidence 55666 4455554 89999999998 77777888 89999999987 11 110
Q ss_pred hhhHHHHHhhhh-h---ccCCcchHHHHHHHHHHHhHhcccC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2489 72 KKTVLEFFQTVY-T---IIDGTATLGIIFFCIVFGAILGTLG----PKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCS 143 (369)
Q Consensus 72 ~~~il~~ip~n~-~---a~~~~~iL~vlvfail~Gial~~~g----~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~ 143 (369)
.+.+++++|+|| . .....++..+++|+.+.|++.-+.. +++|++.++++.++++++|++++++++.|.|+++
T Consensus 164 pq~ilslIP~NpF~dlTGa~~tSiIaVVIFa~~lGiAalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~VirLTPYgV~A 243 (458)
T COG1823 164 PQLILSLIPKNPFADLTGANPTSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLA 243 (458)
T ss_pred HHHHHHhcCCCchhHhhcCCccceeehhHHHHHHHHHHHHhhhhchHhHhHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 157889999998 2 2335689999999999999987763 4578999999999999999999999999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHH
Q psy2489 144 VITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQV 223 (369)
Q Consensus 144 lia~~i~~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~ 223 (369)
+|+..+++ +++++. .+++.|+.++|++..+. +++...+ ..+.|.||.+++|+..|.+.|||.++||.+++|.+++.
T Consensus 244 lMtkv~at-s~~~~I-~~Lg~FivAsY~Ai~~M-FvvH~iL-L~~~g~NPi~Y~Kkv~PvL~FAFtSRSSAatiPlniet 319 (458)
T COG1823 244 LMTKVVAT-SNLEDI-IKLGSFIVASYIAIFIM-FVVHGIL-LALNGVNPIKYFKKVWPVLTFAFTSRSSAATIPLNIET 319 (458)
T ss_pred HHHHHHhh-ccHHHH-HHHHhHHHHHHHHHHHH-HHHHHHH-HHHcCCCHHHHHHHHhHHHhhheecccccccCCccHHH
Confidence 99998776 789999 79999999999997764 4455544 44799999999999999999999999999999999999
Q ss_pred HHhhcccchhhhheeeccccccccCccc-chhhhHHHHHHHHHhhhccCc-cccHHHHH----HHHHHHHHhhhhhHHHH
Q psy2489 224 MDEKVKMSQQVTRFVLPIGNSIHMTGLA-QMTPIGVCSVITSKLISIEDM-TVTMRQLS----KFVATSIGGFLVYHLIV 297 (369)
Q Consensus 224 ~~~~~gv~~~vv~~ViP~G~s~n~~Gta-iy~~~gv~alFiA~~~~~~g~-~lsl~~~~----~~~l~s~gaagvpg~~~ 297 (369)
..+++|+++.++++.-..|+|+.+|||| +|.. +.++++|-. .|+ |+|+.-+. ...++|+|.+|++|++.
T Consensus 320 Qt~klGV~~~IANfaASFG~tiGQNGCAGiyPA--mlAvMVAPt---vgi~p~d~~fi~tli~vv~IsS~GvAGVGGGAT 394 (458)
T COG1823 320 QTRKLGVPEGIANFAASFGATIGQNGCAGIYPA--MLAVMVAPT---VGINPLDPHFIATLIGVVTISSFGVAGVGGGAT 394 (458)
T ss_pred HHHhcCCcHHHHHHHHHhccccccCCchhhhHH--HHHHHhccc---cCCCCCCHHHHHHHHHHHHHhhcccccCCchHH
Confidence 9889999999999999999999999999 5555 889999988 554 35554443 67889999999999988
Q ss_pred HHHHHHHHhccCchhhhhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhccccccccCccc
Q psy2489 298 IQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRHELQDSVDDYV 365 (369)
Q Consensus 298 v~l~~vl~~~g~P~~~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~~~l~~~~~~~~ 365 (369)
..-..+|+.+|+|+.. .+ ++++ +|+++||.||..||.|.+.+..+-+|+.+ +.|+|..|+.
T Consensus 395 fAAliVLs~l~lPv~l-vg----LlIs-IEPlIDMgRTAlNV~GSM~aG~iT~k~lk-~~d~~~~~~~ 455 (458)
T COG1823 395 FAALIVLSALGLPVAL-VG----LLIS-IEPLIDMGRTALNVSGSMTAGTITSKLLK-QTDKEIYNSE 455 (458)
T ss_pred HHHHHHHHhcCCcHHH-HH----HHHh-hhhHHhhhhHhhcccchhHHHHHHHHHHH-hccccccccc
Confidence 8888899999999999 99 9999 99999999999999999999999999997 8888877653
No 10
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=99.95 E-value=8.9e-29 Score=232.35 Aligned_cols=262 Identities=18% Similarity=0.225 Sum_probs=221.8
Q ss_pred hhhh-hccCCcchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy2489 80 QTVY-TIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVT 158 (369)
Q Consensus 80 p~n~-~a~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l 158 (369)
-+|| .++.++|.++++.+++.+|++++.-.+. -.+.++.+++...++++|+++++|+|+|++++.++++. |.+.+
T Consensus 135 VdNPinAl~~aNyiGiLaWaiglG~Alrh~s~~---tk~~~~d~~e~vs~iV~~iI~fAP~GIfgLVasT~a~t-G~~aL 210 (407)
T COG3633 135 VDNPINALLNANYIGILAWAIGLGLALRHASDT---TKNLVNDLSEAVSKIVKVVIRFAPIGIFGLVASTLAET-GFGAL 210 (407)
T ss_pred hcCHHHHHhcCCchhhhHHHHHHhHHHHhccHh---HHHHHHHHHHHHHHHHheeeeccCchhhHHHHHHHHhh-hHHHH
Confidence 3677 8999999999999999999999865443 34567899999999999999999999999999999984 78888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HhHHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhhe
Q psy2489 159 MRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYV-NFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRF 237 (369)
Q Consensus 159 ~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~-~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ 237 (369)
..+.+++.....+++...+++.|++.++.+||||+++.. .+++.-++||.|+||.+.+|++|+.+| ++|.+++..+.
T Consensus 211 -~gYa~LL~vLvg~Mlfva~VVNpliv~~kiRrNPyPLV~~ClReSg~tAFFTRSSAANIPVNm~Lc~-kl~ldedtYsv 288 (407)
T COG3633 211 -WGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRNPYPLVLTCLRESGVTAFFTRSSAANIPVNMALCK-KLGLDEDTYSV 288 (407)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccceEEEEecCCCcchhHHHhhhcCeEEEEecccccCCcccHHHHH-HcCCCccceeE
Confidence 677877766666666666778999988889999998754 778888999999999999999999998 59999999999
Q ss_pred eeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHhccCchhh
Q psy2489 238 VLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKY 313 (369)
Q Consensus 238 ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~~~g~P~~~ 313 (369)
.+|+|+++||.|.++..+ +.++-..+. .|++.|+.+-+ ++.+...|+.|+.|+.+...+.-++.+|+|.|.
T Consensus 289 SIPLGAtINMaGAAITIt--vLtLaAvhT---~gI~vd~~tAlLLSvVA~~~ACGASGVAGGSLLLIPlACslFgIs~Dv 363 (407)
T COG3633 289 SIPLGATINMAGAAITIT--VLTLAAVHT---LGIPVDLPTALLLSVVASVCACGASGVAGGSLLLIPLACSLFGISNDV 363 (407)
T ss_pred eeecCceeeccchhhhHH--HHHHHHHHh---cCccchHHHHHHHHHHHHHHhcccccccCceeeehhhhhhhcCCchHH
Confidence 999999999999999988 888866677 99999988765 667788899999999888889899999999987
Q ss_pred hhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhc
Q psy2489 314 YVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSR 354 (369)
Q Consensus 314 ~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~ 354 (369)
.+. .-+.=.- +.-+.|.+.|..|-.-|-..|+..++-|+
T Consensus 364 Amq-vV~VGFI-IgvlQDS~ETALNSSTDVLFTAa~c~ae~ 402 (407)
T COG3633 364 AMQ-VVAVGFI-IGVLQDSAETALNSSTDVLFTAAACQAED 402 (407)
T ss_pred HHH-hheeeeE-EEEehhhHHHhhcccchHHHHHHHhhhHH
Confidence 333 1111111 33578999999999999999998877443
No 11
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=99.62 E-value=2.3e-14 Score=144.14 Aligned_cols=253 Identities=17% Similarity=0.264 Sum_probs=198.6
Q ss_pred chHHHHHHHHHHHhHhccc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH----HHHHH
Q psy2489 90 ATLGIIFFCIVFGAILGTL-GPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTM----RQLSK 164 (369)
Q Consensus 90 ~iL~vlvfail~Gial~~~-g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~----~~l~~ 164 (369)
++..-+++++++|+.++.. ++.+. ...++.++++|.|+++|+ ++|+.+++++.+ +++++|.+.++ +++.+
T Consensus 7 ~l~~qv~iglilGi~~Gl~~~~~~~--~~~l~plg~~Fi~Likmi--i~PlVf~tlv~g-Ia~~~~~k~~gr~g~ktl~y 81 (415)
T COG1301 7 SLYLQVLIGLILGILVGLFLPELGA--AIYLKPLGDIFIKLIKMI--IIPLVFFTLVLG-IASLGDLKKLGRLGGKTLIY 81 (415)
T ss_pred cHHHHHHHHHHHHHHHHhhccccch--hhhhhhHHHHHHHHHHHH--HHHHHHHHHHHH-HHhhhchHHHHHHHHHHHHH
Confidence 3555667888888888765 33322 466889999999999999 999999999999 77777766665 67778
Q ss_pred HHHHHHHHHHHHHHHH---HHH----------------------HHHHHhCCCHHHHHH--HhHHHHHHHH--Hhhc--c
Q psy2489 165 FVATSIGGFLVYHLIV---IQL----------------------IYFLFTRKNPYKYYV--NFFPAILTAF--ATSS--K 213 (369)
Q Consensus 165 ~~~~~~i~~~i~~~vv---lp~----------------------i~~~~~~~n~~~~l~--~i~~~ll~a~--~T~S--S 213 (369)
|..+..++.+++..+. +|+ .+..+.|.|+++.+. ++.|.+++|+ |++. -
T Consensus 82 f~~tt~~A~~iGl~~~~~~~Pg~g~~~~~~~~~~~~~~~~~~~~~l~~iiP~ni~~a~a~g~vLqil~fail~G~al~~~ 161 (415)
T COG1301 82 FLVTTTLAIAIGLVVANVLQPGAGINIDPATLDTGAESEVSILDFLLDIIPTNIFGALAEGNVLQILFFAILFGLALAAL 161 (415)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcCccccCCcccccchHHHHHHhhcCCChHhHhcCCChHHHHHHHHHHHHHHHHc
Confidence 8888888777776652 333 234457999999887 4999998884 4332 2
Q ss_pred -cchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHHhhhh
Q psy2489 214 -SAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLV 292 (369)
Q Consensus 214 -~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~gaagv 292 (369)
++.-|...+..|+..++..+++++++ .+.|+|++++ +|+.++++|.+ ++.++...+++-+.+..+
T Consensus 162 ~~~~~~~v~~~~~~~~~~~~~v~~~vm------------~laPigvf~~-~a~~v~~~G~~-~L~~l~~~v~~~~~~~~l 227 (415)
T COG1301 162 GEKGKPPVENLFESLSEAMFKVTNFVM------------RLAPIGVFGL-MAFTVAKYGFG-SLLSLGKLVLAVYLGLLL 227 (415)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH------------HHhhHHHHHH-HHHHHHHhcHH-HHHHHHHHHHHHHHHHHH
Confidence 44445567788877889999999999 9999999999 89999999996 488888888888888777
Q ss_pred hHHHHHHHHHHHH-hcc-Cchhhhhhhhchhhhhhhhh-------------------------hccchhhhhhcchh---
Q psy2489 293 YHLIVIQLIYFLF-TRK-NPYKYYVNFFPAILTAFATS-------------------------SKDRVRTTVNLMGD--- 342 (369)
Q Consensus 293 pg~~~v~l~~vl~-~~g-~P~~~~~~~~~alilafvd~-------------------------~~d~~rt~~Nv~g~--- 342 (369)
. .++.++.++. ..| .|.++++..+++++++|.++ |.-+.+.+.|..|.
T Consensus 228 ~--~~vvl~~~~~~~~g~s~~~~~r~~~~~~~~Af~T~SS~atLPv~m~~~e~~~Gv~~~i~~fvvPlG~t~nldGtaiy 305 (415)
T COG1301 228 F--VFVVLGLLLKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLGYTFNLDGTAIY 305 (415)
T ss_pred H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhcCCCcceeEEEeecCceeCCcchHHH
Confidence 6 4778888888 447 99999888999999997774 67788999999994
Q ss_pred -HHHHHHHHhhhccccccccCccc
Q psy2489 343 -CYAVAVVDHLSRHELQDSVDDYV 365 (369)
Q Consensus 343 -~v~t~~va~~~~~~l~~~~~~~~ 365 (369)
.+++.++++.++.++. ..||.
T Consensus 306 ~~~a~~FIAq~~g~~Ls--~~~~l 327 (415)
T COG1301 306 QTLAALFIAQAYGIPLS--LGQQL 327 (415)
T ss_pred HHHHHHHHHHHhCCCCC--HHHHH
Confidence 7889999999988776 55554
No 12
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.59 E-value=7.1e-14 Score=142.06 Aligned_cols=241 Identities=15% Similarity=0.246 Sum_probs=181.6
Q ss_pred HHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH----HHHHHHHHHHH
Q psy2489 95 IFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTM----RQLSKFVATSI 170 (369)
Q Consensus 95 lvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~----~~l~~~~~~~~ 170 (369)
++.++++|+.++..-+ +..+.++.++++|+++++|+ +.|+.+++++.+ ++++.+.++++ +.+.+|+.+..
T Consensus 13 iligl~lGi~~G~~~~---~~~~~l~~iG~iFl~lLkm~--VvPLVf~Sii~g-I~~l~~~~~lg~i~~~~~~~f~~tt~ 86 (428)
T PRK01663 13 VLVAIIIGILLGHFYP---ELGAQMKPLGDGFIKLIKMI--IAPIIFCTVVTG-IAGMGDMKKVGRVGGKALLYFEIVST 86 (428)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHH-HHhCccccccchhHHHHHHHHHHHHH
Confidence 5667777777664422 13466889999999999999 999999999999 77765544443 67778888888
Q ss_pred HHHHHHHHHH---HHH-----------------------------HHHHHhCCCHHHHHH--HhHHHHHHHHH----hhc
Q psy2489 171 GGFLVYHLIV---IQL-----------------------------IYFLFTRKNPYKYYV--NFFPAILTAFA----TSS 212 (369)
Q Consensus 171 i~~~i~~~vv---lp~-----------------------------i~~~~~~~n~~~~l~--~i~~~ll~a~~----T~S 212 (369)
+++++.+.+. .|+ .+..+.|.||++.+. ++.+.+++++. ...
T Consensus 87 iA~~lgl~~~~l~~pg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iP~Nif~ala~gnvL~vIvFai~~GiAl~~ 166 (428)
T PRK01663 87 IALIIGLIVVNVVQPGAGMNIDPATLDAKAVAQYAAQAHEQGTVDFLMDIIPTTVVGAFASGDILQVLLFAVLFGFALAR 166 (428)
T ss_pred HHHHHHHHHHHhcCCCCCcCcccccccchhhcccccccccccHHHHHHHHCCCchHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 8777766542 121 234467899998877 88888887743 323
Q ss_pred -ccchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHHhhh
Q psy2489 213 -KSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFL 291 (369)
Q Consensus 213 -S~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~gaag 291 (369)
.++.-| ..+.+|+-.++..+++++++ .+.|+|++++ +|+.++++|.+. +.++..++++.+.+..
T Consensus 167 ~~e~~~~-l~~~~~~~~~vi~kii~~im------------~laPiGVfal-iA~~v~~~g~~~-l~~l~~~l~~~~~~~~ 231 (428)
T PRK01663 167 LGEKGKP-VFDFIESLSHVLFGIVNMIM------------KLAPIGAFGA-MAFTIGKYGVGS-LVQLGQLIGCFYITCI 231 (428)
T ss_pred cccccch-HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH-HHHHHHhcCHHH-HHHHHHHHHHHHHHHH
Confidence 244334 57888877889999999999 9999999999 888889999886 7788888888887766
Q ss_pred hhHHHHHHHHHHHHhcc-Cchhhhhhhhchhhhhhhhh------------------------hccchhhhhhcchhH---
Q psy2489 292 VYHLIVIQLIYFLFTRK-NPYKYYVNFFPAILTAFATS------------------------SKDRVRTTVNLMGDC--- 343 (369)
Q Consensus 292 vpg~~~v~l~~vl~~~g-~P~~~~~~~~~alilafvd~------------------------~~d~~rt~~Nv~g~~--- 343 (369)
+.. ++.++.++...| .|.++++..++++++||.++ |.-+.+++.|..|.+
T Consensus 232 i~~--~vv~~~i~~~~~~~p~~f~k~~~~~~~~AfsT~SS~atLPv~i~~~e~lgv~~~ia~fvlPLGatinm~G~aly~ 309 (428)
T PRK01663 232 LFV--FVVLGAIARLTGFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKMEKLGCKKSVVGLVIPTGYSFNLDGTSIYL 309 (428)
T ss_pred HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhecccHHhHHHHHHHHHHHcCCCccceeEEeecccccCCCccHHHH
Confidence 652 455555555556 78888888999999998775 677889999999974
Q ss_pred -HHHHHHHhhhccccc
Q psy2489 344 -YAVAVVDHLSRHELQ 358 (369)
Q Consensus 344 -v~t~~va~~~~~~l~ 358 (369)
+++.++++..+.+++
T Consensus 310 ~~~~iFia~~~Gi~l~ 325 (428)
T PRK01663 310 TMAAVFIAQATNTPLS 325 (428)
T ss_pred HHHHHHHHHHHCCCCC
Confidence 578888898887664
No 13
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=99.56 E-value=2.8e-13 Score=138.03 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhHhccc-CCc---hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH----HHHH
Q psy2489 93 GIIFFCIVFGAILGTL-GPK---KKT-VLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTM----RQLS 163 (369)
Q Consensus 93 ~vlvfail~Gial~~~-g~~---~~~-l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~----~~l~ 163 (369)
.-++.++++|+.++.. ++. ... ..+.++.++++|+++++|+ +.|+.+++++.+ ++++++.++++ +.+.
T Consensus 10 ~~IliglvlGi~~G~~~~~~~~~~~~~~~~~l~~~G~iFl~lLkm~--VvPLVf~Sii~g-I~~l~~~~~lg~ig~~~~~ 86 (437)
T PRK11283 10 WQILIALVLGILLGAYLHYHSDSRDWLVSNLLSPAGDIFIHLIKMI--VVPIVISTLIVG-IAGVGDAKQLGRIGAKTII 86 (437)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHH-HHhcccchhcchhhHHHHH
Confidence 3455666666665532 221 111 2356899999999999999 999999999999 77776555552 6777
Q ss_pred HHHHHHHHHHHHHHHHH---HHH--------------------------------HHHHHhCCCHHHHHH--HhHHHHHH
Q psy2489 164 KFVATSIGGFLVYHLIV---IQL--------------------------------IYFLFTRKNPYKYYV--NFFPAILT 206 (369)
Q Consensus 164 ~~~~~~~i~~~i~~~vv---lp~--------------------------------i~~~~~~~n~~~~l~--~i~~~ll~ 206 (369)
+|+.+..+++.+.+.+. .|+ .+..+.|.||++.+. ++.+.+++
T Consensus 87 ~f~~tt~ia~~igl~~~~i~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iP~N~~~ala~gn~L~vIiF 166 (437)
T PRK11283 87 YFEVITTVAIILGITLANVFQPGAGIDMSQLATVDISKYQSTTEEVQSHSHGLMGTILSLIPTNIFASMAKGEMLPIIFF 166 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhhhhhhcccccccccccccHHHHHHHHcCCChHHHHhcCChHHHHHH
Confidence 88888877777665531 121 234567899998877 88888888
Q ss_pred HHH----hhcc-cchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHH
Q psy2489 207 AFA----TSSK-SAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSK 281 (369)
Q Consensus 207 a~~----T~SS-~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~ 281 (369)
++. .... +..-....+.+|+-.++..+++++++ .+.|+|++++ +|+..+++|.+. +.++..
T Consensus 167 ai~~GiAl~~~~~~~~~~l~~~~~~~~~~~~kii~~im------------~~aPiGVfal-iA~~~~~~g~~~-l~~l~~ 232 (437)
T PRK11283 167 SVLFGLGLSSLPATHREPLVTVFRSVSETMFKVTHMVM------------RYAPVGVFAL-IAVTVANFGFAS-LWPLAK 232 (437)
T ss_pred HHHHHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH-HHHHHHhcCHHH-HHHHHH
Confidence 743 2222 33233346777766778889999999 9999999999 889989999886 777777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcc-Cchhhhhhhhchhhhhhhhh------------------------hccchhhh
Q psy2489 282 FVATSIGGFLVYHLIVIQLIYFLFTRK-NPYKYYVNFFPAILTAFATS------------------------SKDRVRTT 336 (369)
Q Consensus 282 ~~l~s~gaagvpg~~~v~l~~vl~~~g-~P~~~~~~~~~alilafvd~------------------------~~d~~rt~ 336 (369)
+++..+.+..+.. ++.++.++...| +|.++++..++++++||.++ |.-+.+++
T Consensus 233 ~l~~~~~~~~l~~--~vv~~~i~~~~~~np~~~~k~~~~~~~~AfsT~SS~atLP~~~~~~e~lGv~~~ia~fvlPLGat 310 (437)
T PRK11283 233 LVLLVYFAILFFA--LVVLGIVARLCGLSIWILIRILKDELILAYSTASSETVLPRIIEKMEAYGAPKSITSFVVPTGYS 310 (437)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHheccchhhhHHHHHHHHHHcCcCccceeEEeecccc
Confidence 7777777665542 455555544445 89999889999999998764 67788999
Q ss_pred hhcchhH----HHHHHHHhhhccccc
Q psy2489 337 VNLMGDC----YAVAVVDHLSRHELQ 358 (369)
Q Consensus 337 ~Nv~g~~----v~t~~va~~~~~~l~ 358 (369)
.|..|.+ +++.++++..+.+++
T Consensus 311 ~nmdG~aly~~l~~iFiaq~~Gi~l~ 336 (437)
T PRK11283 311 FNLDGSTLYQSIAAIFIAQLYGIDLS 336 (437)
T ss_pred cCCCccHHHHHHHHHHHHHHHCCCCC
Confidence 9999974 577889999987764
No 14
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.54 E-value=8e-13 Score=134.17 Aligned_cols=244 Identities=15% Similarity=0.212 Sum_probs=181.0
Q ss_pred HHHHHHHHHHhHhccc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH----HHHHHHHH
Q psy2489 93 GIIFFCIVFGAILGTL-GPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTM----RQLSKFVA 167 (369)
Q Consensus 93 ~vlvfail~Gial~~~-g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~----~~l~~~~~ 167 (369)
.-++.++++|+.++.. ++ ..+.++.++++|.++++|+ +.|+.+++++.+ ++++++.+.++ +++.+|+.
T Consensus 10 ~~i~igl~lGi~~G~~~~~----~~~~l~~iG~iFl~lLkm~--VvPlVf~sii~g-I~~l~~~~~~grig~~~~~~f~~ 82 (421)
T PRK13027 10 GQVVIALVLGVALGAFFPH----FAESLKPLGDGFIKLIKML--IGPIVFCVVVSG-IAGAGDLKKVGRVGLKAVIYFEV 82 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHH-HHhCccchhcchhHHHHHHHHHH
Confidence 3456677777776643 22 3456889999999999999 999999999998 87776655553 56667777
Q ss_pred HHHHHHHHHHHHHH---HH------------------------------HHHHHhCCCHHHHHH--HhHHHHHHHHHh--
Q psy2489 168 TSIGGFLVYHLIVI---QL------------------------------IYFLFTRKNPYKYYV--NFFPAILTAFAT-- 210 (369)
Q Consensus 168 ~~~i~~~i~~~vvl---p~------------------------------i~~~~~~~n~~~~l~--~i~~~ll~a~~T-- 210 (369)
+..+++++.+.+.+ |+ .+..+.|.||++.+. ++.+.+++|+..
T Consensus 83 tt~ia~~igl~~~~~~~pg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Nif~ala~gn~L~vIvFAi~~Gi 162 (421)
T PRK13027 83 MTTIALVIGLVLAYLTGPGVGMNIDLRSLDAASLAGYAKNAQSLKGTAGFLLKLIPTTAVDAFAKGDILQVLLFSVLFGS 162 (421)
T ss_pred HHHHHHHHHHHHHHHhCCCCCccccccccchhhhhhhcccccccccHHHHHHHHCccchHHHhhcCChHHHHHHHHHHHH
Confidence 77777766655421 20 234457889998877 888888887432
Q ss_pred --hcccchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHH
Q psy2489 211 --SSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIG 288 (369)
Q Consensus 211 --~SS~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~g 288 (369)
+.....-....+.+++-.++..+++++++ .+.|+|++++ +|+.++++|.+. +.++..++++.+.
T Consensus 163 Al~~~~e~~~~l~~~~~~~~~~~~kii~~im------------~laPigVfal-iA~~~~~~g~~~-l~~l~~~l~~~~~ 228 (421)
T PRK13027 163 ALSLLGERAKRVNRLIDELSHVLFRIMGFII------------KLAPLGVLGA-IAFTTGKYGVGS-LKQLGMLVAVFYL 228 (421)
T ss_pred HHHhcCcccchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH-HHHHHHHcCHHH-HHHHHHHHHHHHH
Confidence 22222234457777777788999999999 9999999999 888889999885 7777777777777
Q ss_pred hhhhhHHHHHHHHHHHHhcc-Cchhhhhhhhchhhhhhhhh------------------------hccchhhhhhcchh-
Q psy2489 289 GFLVYHLIVIQLIYFLFTRK-NPYKYYVNFFPAILTAFATS------------------------SKDRVRTTVNLMGD- 342 (369)
Q Consensus 289 aagvpg~~~v~l~~vl~~~g-~P~~~~~~~~~alilafvd~------------------------~~d~~rt~~Nv~g~- 342 (369)
+..+.. ++.++.++...+ .|.++++..++++++||.++ |.-+.+++.|..|.
T Consensus 229 ~~~i~~--~vv~~~i~~~~~~~p~~~~k~~~~~~~~Af~T~SS~AtLPv~~~~~e~lgv~~~ia~fvlPLGatinm~G~a 306 (421)
T PRK13027 229 TCFVFV--VVVLGAVMRLAGFSVFKLIRYLREELLIVLGTASSDAVLPQVMRKLEHMGIKDSTVGLVIPTGYSFNLDGFS 306 (421)
T ss_pred HHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHcCCCccceeEEeecccccCCCccH
Confidence 665542 445555555556 78888788899999998775 67788999999997
Q ss_pred ---HHHHHHHHhhhcccccc
Q psy2489 343 ---CYAVAVVDHLSRHELQD 359 (369)
Q Consensus 343 ---~v~t~~va~~~~~~l~~ 359 (369)
++++.++++..|.+++-
T Consensus 307 iy~~~~~~Fiaq~~G~~l~~ 326 (421)
T PRK13027 307 IYLTLAAVFIAQATNTPLSM 326 (421)
T ss_pred HHHHHHHHHHHHHHCCCCCH
Confidence 56788899998877753
No 15
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=99.47 E-value=4e-12 Score=127.97 Aligned_cols=248 Identities=21% Similarity=0.356 Sum_probs=180.4
Q ss_pred HHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH---H-HHHHHHHHHHH
Q psy2489 95 IFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVT---M-RQLSKFVATSI 170 (369)
Q Consensus 95 lvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l---~-~~l~~~~~~~~ 170 (369)
++.++++|++++.. +..+...+.++..+++++++++++ +.|+.+++++.+ ++++.+.++. + +.+.+|..+..
T Consensus 5 ilia~vlGi~~G~~-~~~~~~~~~l~~~G~lfi~ll~~~--v~PLVf~sii~g-i~~l~~~~~~g~i~~~~i~~~~~~t~ 80 (390)
T PF00375_consen 5 ILIAIVLGILLGLI-DFSPEAAQWLSFPGDLFIRLLKML--VLPLVFSSIISG-IASLGDAKKLGRIGGRTILYFLLTTL 80 (390)
T ss_dssp HHHHHHHHHHHHHH-TTHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHHH-CHSHT-TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH-HhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhh-ccCCccccccccHHHHHHHHHHHHHH
Confidence 45667777766653 344567788999999999999999 999999999988 7776533333 2 67778888888
Q ss_pred HHHHHHHHHH---HHH-----------------------HHHHHhCCCHHHHHH--HhHHHHHHHH----Hhhcccchhh
Q psy2489 171 GGFLVYHLIV---IQL-----------------------IYFLFTRKNPYKYYV--NFFPAILTAF----ATSSKSAALP 218 (369)
Q Consensus 171 i~~~i~~~vv---lp~-----------------------i~~~~~~~n~~~~l~--~i~~~ll~a~----~T~SS~a~lP 218 (369)
++..+...+. .|. ..+.+.|.|+++.+. ++.+.+++|+ +.......-.
T Consensus 81 ~A~~ig~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Ni~~a~~~~~~L~ivvfai~~G~al~~~~~~~~ 160 (390)
T PF00375_consen 81 LAAAIGLLVALLFQPGASGVRASSAVSSISSSESPSLLDFLRNLIPSNIFEAFANGNILGIVVFAILFGVALGRLGEKGK 160 (390)
T ss_dssp HHHHHHHHHHHHS-SS-TTS-SSTTSS--------SSHHHHHCTS-SSHHHHHHSS-HHHHHHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHheeeCCCccccccccccccccccccccchhhhccccCCcHHHhhhhcccchhhhHHHHHHHHHHHHhhhhh
Confidence 8877766552 222 355668999998887 8888888774 2333222224
Q ss_pred HHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHHhhhhhHHHHH
Q psy2489 219 ITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVI 298 (369)
Q Consensus 219 ~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~gaagvpg~~~v 298 (369)
..++.+|+-.++..++.++++ .|.|+|++++ +++...++|.+. +.++..+++..+.+..+. .++
T Consensus 161 ~~~~~~~~~~~~~~~ii~~i~------------~~~Pigv~~l-~a~~~~~~~~~~-l~~l~~~v~~~~~~~~i~--~~v 224 (390)
T PF00375_consen 161 PLIDFFESLNEVIMKIINWIM------------KLAPIGVFGL-IANSIATQGLSI-LGALGKFVLTVYVALLIH--LFV 224 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------------TTHHHHHHHH-HHHHHHSSCCGH-HHHHHHHHHHHHHHHHHH--HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH-HHHHHHhcChhh-HHHHHHHHHHHHHHHHHH--HHH
Confidence 456777777789999999999 9999999999 788878888875 777888888888888776 356
Q ss_pred HHHHHHHhc-c-Cchhhhhhhhchhhhhhhhh-------------------------hccchhhhhhcchh----HHHHH
Q psy2489 299 QLIYFLFTR-K-NPYKYYVNFFPAILTAFATS-------------------------SKDRVRTTVNLMGD----CYAVA 347 (369)
Q Consensus 299 ~l~~vl~~~-g-~P~~~~~~~~~alilafvd~-------------------------~~d~~rt~~Nv~g~----~v~t~ 347 (369)
.++.++... | +|.++++...+++++||.++ +.-+.+++.|..|+ ++++.
T Consensus 225 ~~pl~~~~~~~~np~~~~~~~~~~~l~Af~T~SS~atlP~~~~~~~~~~gv~~~i~~fv~Plg~t~n~~G~a~~~~~~~i 304 (390)
T PF00375_consen 225 VLPLILFVLTRKNPFKFLKAMLPALLTAFSTSSSAATLPVTIECLEENLGVSRSIASFVLPLGATINMDGTALYIAIAAI 304 (390)
T ss_dssp THHHHHH-TTT--HHHHHHHTHHHHHHHHHHT-TTTSHHHHHHHHHT-TT--HHHHHHHHHHHTTS--HHHHHHHHHHHH
T ss_pred HhhHHHhhhcCCCHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHhcCCCcccceeeechhccccCCccchHHHHHHH
Confidence 677666633 4 99999888999999997774 67778999999998 45788
Q ss_pred HHHhhhccccccccCcc
Q psy2489 348 VVDHLSRHELQDSVDDY 364 (369)
Q Consensus 348 ~va~~~~~~l~~~~~~~ 364 (369)
++++..+.+++ ..||
T Consensus 305 Fia~~~gi~l~--~~~~ 319 (390)
T PF00375_consen 305 FIAQLYGIDLS--FGQI 319 (390)
T ss_dssp HHHHHHT--TT--TTTH
T ss_pred HhhhccCceec--hhHH
Confidence 88898887765 4444
No 16
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=99.43 E-value=1.3e-11 Score=124.63 Aligned_cols=245 Identities=17% Similarity=0.249 Sum_probs=178.7
Q ss_pred cchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH--HHHHHHHHH
Q psy2489 89 TATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTV--TMRQLSKFV 166 (369)
Q Consensus 89 ~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~--l~~~l~~~~ 166 (369)
.+...-++.++++|++++..-+ +..+.++.++|+|+|+++|+ +.|+.+++++.+ ++++++.+. ..+.+.+|+
T Consensus 14 ~~l~~~ilig~vlGi~~G~~~~---~~~~~l~~iG~iFl~llkmi--V~PLVf~sIv~g-I~~l~~~~~~~~~~~i~~~~ 87 (402)
T PRK13628 14 GSLVKQILIGLVLGILLALLSP---PAAEAVGLLGTLFVGALKAV--APILVFVLVMAS-IANHKKGQKTNIRPILVLYL 87 (402)
T ss_pred ccHHHHHHHHHHHHHHHHHhhH---HHHHHHhccHHHHHHHHHHH--HHHHHHHHHHHH-HHhCcccccccHHHHHHHHH
Confidence 3556667888888888875422 23466899999999999998 899999999988 776655433 223677888
Q ss_pred HHHHHHHHHHHHHHH---HH-------------------H--HHHHhCCCHHHHHH--HhHHHHHHHHH----hhcccch
Q psy2489 167 ATSIGGFLVYHLIVI---QL-------------------I--YFLFTRKNPYKYYV--NFFPAILTAFA----TSSKSAA 216 (369)
Q Consensus 167 ~~~~i~~~i~~~vvl---p~-------------------i--~~~~~~~n~~~~l~--~i~~~ll~a~~----T~SS~a~ 216 (369)
.+..+++.+.+.+.+ |. . .....+.||++.+. ++.+.+++|+. ..+....
T Consensus 88 ~tt~ia~~~gl~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~al~~gniL~vIvFai~~GiAl~~~~~~ 167 (402)
T PRK13628 88 LGTFLAALVAVVASFLFPSTLVLVASAADISPPQGIVEVLKTLLLSLVDNPINALLNANYIGILAWAIGLGLALRHASDT 167 (402)
T ss_pred HHHHHHHHHHHHHHHHcCCcCCcccccccccCCcchHHHHHHHHHHCcCCHHHHhHcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 888887776654421 10 0 12234689998776 78888888743 2232222
Q ss_pred hhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHHhhhhhHHH
Q psy2489 217 LPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLI 296 (369)
Q Consensus 217 lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~gaagvpg~~ 296 (369)
..+.+++-.++..+++++++ .+.|+|++++ +|+.++++|.+. +.++..++++.+.+..+. .
T Consensus 168 ---~~~~~~~~~~~~~kii~~Im------------~laPiGVfal-iA~~v~~~g~~~-l~~l~~~v~~~~~~~~i~--~ 228 (402)
T PRK13628 168 ---TKNVVNDLSEAVSQIVKWVI------------RFAPIGIFGL-VASTLAETGFSA-LAGYAQLLAVLVGCMLFV--A 228 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH-HHHHHHHccHHH-HHHHHHHHHHHHHHHHHH--H
Confidence 23555555678889999999 9999999999 889989999886 777778888888776665 3
Q ss_pred HHHHHHHHHh-cc-Cchhh-hhhhhchhhhhhhhh------------------------hccchhhhhhcchhH----HH
Q psy2489 297 VIQLIYFLFT-RK-NPYKY-YVNFFPAILTAFATS------------------------SKDRVRTTVNLMGDC----YA 345 (369)
Q Consensus 297 ~v~l~~vl~~-~g-~P~~~-~~~~~~alilafvd~------------------------~~d~~rt~~Nv~g~~----v~ 345 (369)
+++++.++.. .| +|.++ ++..++++++||.++ |.-+.+++.|..|.+ ++
T Consensus 229 ~vv~~~i~~~~~~~~p~~~~~k~~~~~~~~AfsT~SS~AtLPv~m~~~~~lGv~~~i~~fvlPLGat~nmdG~aly~~i~ 308 (402)
T PRK13628 229 LVVNPLIVFWKIRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMALCEKLGLDEDTYSVSIPLGATINMAGAAITITVL 308 (402)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHheehhHHhHHHHHHHHHHHcCcCccceeEEeecccccCCCccHHHHHHH
Confidence 5666666644 35 79997 677889999997764 677789999999974 55
Q ss_pred HHHHHhhhccccc
Q psy2489 346 VAVVDHLSRHELQ 358 (369)
Q Consensus 346 t~~va~~~~~~l~ 358 (369)
+.++++..|.+++
T Consensus 309 ~iFiaq~~Gi~l~ 321 (402)
T PRK13628 309 TLAAVHTLGIPVD 321 (402)
T ss_pred HHHHHHHhCCCCC
Confidence 8899999887765
No 17
>KOG3787|consensus
Probab=99.32 E-value=1.8e-11 Score=121.95 Aligned_cols=253 Identities=23% Similarity=0.363 Sum_probs=171.9
Q ss_pred CcchHHHHHHHHHHHhHhccc-CC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH---HH-H
Q psy2489 88 GTATLGIIFFCIVFGAILGTL-GP--KKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTV---TM-R 160 (369)
Q Consensus 88 ~~~iL~vlvfail~Gial~~~-g~--~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~---l~-~ 160 (369)
++-++-.-+.++++|..++.. ++ -++.-+.++.--+|+++|++||+ +.|+.+.|++++ .+++ |.+. ++ +
T Consensus 15 ~N~LlllTv~~Vv~G~~lGf~LR~~~ls~~~i~yi~FPGElfmrmLkmm--ILPLI~SSlisg-la~L-Da~~sGrlg~~ 90 (507)
T KOG3787|consen 15 ENLLLLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMM--ILPLIVSSLISG-LASL-DAKASGRLGMR 90 (507)
T ss_pred hchhHHHHHHHHHHHHhhhheecCCCCChhheeeeeCCHHHHHHHHHHH--HHHHHHHHHHHH-Hhhc-CccccccchHH
Confidence 334556667777888777643 11 12334566777899999999999 999999999999 7776 4332 22 6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHH--------------------------HHHHHhCCCHHHH-HH------------
Q psy2489 161 QLSKFVATSIGGFLVYHLIV---IQL--------------------------IYFLFTRKNPYKY-YV------------ 198 (369)
Q Consensus 161 ~l~~~~~~~~i~~~i~~~vv---lp~--------------------------i~~~~~~~n~~~~-l~------------ 198 (369)
+..+|+.+.+++.+++++++ .|+ +.|+.-|.|..+. ++
T Consensus 91 av~YY~~TT~~Av~lGI~lV~~IhPG~~~~~~~~~~~~~~~~~vs~~DtfLDLiRNmFPeNlvqAtf~q~~T~y~~~~~~ 170 (507)
T KOG3787|consen 91 AVVYYMSTTIIAVILGIALVLIIHPGDPTKKNELGREGLIDSNVSTLDTFLDLIRNMFPENLVQATFQQYQTKYKPVTKA 170 (507)
T ss_pred HHHHHHHHHHHHHHHHHheeEEecCCChhhhcccCcccccccccchHHHHHHHHHhhCcHHHHHHHHHHHeeEEEeeccc
Confidence 78899999999999888774 333 2344444444432 11
Q ss_pred ---------------------HhHHHHHHH--HHh--hcccchhhHHHHHHHhhcccchhhhheeeccccccccCcccch
Q psy2489 199 ---------------------NFFPAILTA--FAT--SSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQM 253 (369)
Q Consensus 199 ---------------------~i~~~ll~a--~~T--~SS~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy 253 (369)
+++..+.|+ ||+ +-....-..+.+.......+..+.+.+++ +|
T Consensus 171 ~~~~~t~~~~~~~~~~~~~GmNvLGlVvF~~~fGivig~lG~~g~~lv~FF~~L~e~iMklV~~iM------------Wy 238 (507)
T KOG3787|consen 171 SPGNATEEALPKGVPGYTDGMNVLGLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIM------------WY 238 (507)
T ss_pred CCCCccccccccCccccccCccchhHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH------------HH
Confidence 111122222 221 11122222233444444457778888998 99
Q ss_pred hhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--hccCchhhhhhhhchhhhhhhh----
Q psy2489 254 TPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLF--TRKNPYKYYVNFFPAILTAFAT---- 327 (369)
Q Consensus 254 ~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~gaagvpg~~~v~l~~vl~--~~g~P~~~~~~~~~alilafvd---- 327 (369)
.|+|+.++-.++.++.-++.....++..++++.+-..-++| +++++.+.. ..++|.+++.+..+|+++||-+
T Consensus 239 ~PvGI~fLIagkIlem~Dl~~~~~~Lg~Yv~TVi~GL~iH~--~i~lPliYF~~TrkNP~~f~~Gm~Qal~TA~gTsSSs 316 (507)
T KOG3787|consen 239 SPVGILFLIAGKILEMEDLGVTARQLGMYVVTVILGLFIHG--FIVLPLIYFVVTRKNPFRFIAGLLQALATAFGTASSS 316 (507)
T ss_pred cchhHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHH--HHHhhheeEEEEccChHHHHHHHHHHHHHHHhccccc
Confidence 99999999778885555555545555688888887777875 555554433 3469999988888888888543
Q ss_pred ---------------------hhccchhhhhhcchh----HHHHHHHHhhhccccc
Q psy2489 328 ---------------------SSKDRVRTTVNLMGD----CYAVAVVDHLSRHELQ 358 (369)
Q Consensus 328 ---------------------~~~d~~rt~~Nv~g~----~v~t~~va~~~~~~l~ 358 (369)
||.=+.++++|+.|+ |++++++||.++.+|+
T Consensus 317 ATLPitfkCleEn~gVD~RiTRFVLPvGATINMDGtALYEAVAaIFIAQln~~~Ls 372 (507)
T KOG3787|consen 317 ATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQLNNVELS 372 (507)
T ss_pred ccchHHHHHHHHhCCCCcceeeeecccCceecCChHHHHHHHHHHHHHHHhCceec
Confidence 688889999999996 8999999999987775
No 18
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=99.23 E-value=6.9e-10 Score=108.46 Aligned_cols=245 Identities=18% Similarity=0.319 Sum_probs=178.6
Q ss_pred chHHHHHHHHHHHhHhccc-CCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH----HH
Q psy2489 90 ATLGIIFFCIVFGAILGTL-GPK---KKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTM----RQ 161 (369)
Q Consensus 90 ~iL~vlvfail~Gial~~~-g~~---~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~----~~ 161 (369)
.++-.++.+++||++++.. +.. -+...++++.+++-+.++++|+ +.|+.+.|+++. +.++..-++++ ..
T Consensus 33 rV~~aL~lG~vfG~~Lq~~~g~~~~~~~~t~~W~nivgnGYV~LLqMi--vmPLVfiSIlsA-i~kl~~~~~lgKis~l~ 109 (458)
T COG1823 33 RVLIALVLGVVFGLALQYIYGTDSPVLKETIDWFNIVGNGYVRLLQMI--VMPLVFISILSA-IAKLDNASKLGKISLLT 109 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHhHhHHHHHhhhHHHHHHHHH--HHHHHHHHHHHH-HHHHHhccchhhhHHHH
Confidence 5667778888888888875 332 2456778888999999999999 999999999988 76654333332 46
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHhCCCHHHHHHHhHH-----
Q psy2489 162 LSKFVATSIGGFLVYHLIVI----------------------------------QLIYFLFTRKNPYKYYVNFFP----- 202 (369)
Q Consensus 162 l~~~~~~~~i~~~i~~~vvl----------------------------------p~i~~~~~~~n~~~~l~~i~~----- 202 (369)
++.++.+..++..++++..+ |-.+.-+.|+|||.=+....|
T Consensus 110 i~~ll~ttaIAA~iGi~~~~~fgLtA~~l~~G~~e~a~~~~i~~~~~~~~~~tipq~ilslIP~NpF~dlTGa~~tSiIa 189 (458)
T COG1823 110 IGTLLFTTAIAALIGILVALLFGLTAEGLVQGDAETARISEIQTYVGKVADLTIPQLILSLIPKNPFADLTGANPTSIIA 189 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhCcHHHHHHHHHHHHhhhhhhcchHHHHHHhcCCCchhHhhcCCccceee
Confidence 77778888888887777632 224556789999987774443
Q ss_pred HHHHHH----HhhcccchhhHHHHHH----HhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccc
Q psy2489 203 AILTAF----ATSSKSAALPITFQVM----DEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTV 274 (369)
Q Consensus 203 ~ll~a~----~T~SS~a~lP~~~~~~----~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~l 274 (369)
..+|+. +.-+-.+.-|..-|.. +..+.+-.+++++|+ ...|||+.++ +++..++++++
T Consensus 190 VVIFa~~lGiAalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~Vi------------rLTPYgV~Al-Mtkv~ats~~~- 255 (458)
T COG1823 190 VVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVI------------RLTPYGVLAL-MTKVVATSNLE- 255 (458)
T ss_pred hhHHHHHHHHHHHHhhhhchHhHhHHHHHHHHHHHHHHHHHHHHH------------HhccHHHHHH-HHHHHhhccHH-
Confidence 444442 2222222224333333 333456678899999 8999999999 99999999987
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcc-Cchhhhhhhhchhhhhhhhh-------------------------
Q psy2489 275 TMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRK-NPYKYYVNFFPAILTAFATS------------------------- 328 (369)
Q Consensus 275 sl~~~~~~~l~s~gaagvpg~~~v~l~~vl~~~g-~P~~~~~~~~~alilafvd~------------------------- 328 (369)
++..+..++.+||.+-.+ .+++....+...| +|.++++..||.+..||.+|
T Consensus 256 ~I~~Lg~FivAsY~Ai~~---MFvvH~iLL~~~g~NPi~Y~Kkv~PvL~FAFtSRSSAatiPlnietQt~klGV~~~IAN 332 (458)
T COG1823 256 DIIKLGSFIVASYIAIFI---MFVVHGILLALNGVNPIKYFKKVWPVLTFAFTSRSSAATIPLNIETQTRKLGVPEGIAN 332 (458)
T ss_pred HHHHHHhHHHHHHHHHHH---HHHHHHHHHHHcCCCHHHHHHHHhHHHhhheecccccccCCccHHHHHHhcCCcHHHHH
Confidence 377777899999987665 3777777888888 99999899999999999887
Q ss_pred hccchhhhhhcchh-----HHHHHHHHhhhc
Q psy2489 329 SKDRVRTTVNLMGD-----CYAVAVVDHLSR 354 (369)
Q Consensus 329 ~~d~~rt~~Nv~g~-----~v~t~~va~~~~ 354 (369)
|-..+++++-..|+ +..+..|+...+
T Consensus 333 faASFG~tiGQNGCAGiyPAmlAvMVAPtvg 363 (458)
T COG1823 333 FAASFGATIGQNGCAGIYPAMLAVMVAPTVG 363 (458)
T ss_pred HHHHhccccccCCchhhhHHHHHHHhccccC
Confidence 56667777777775 677777777554
No 19
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=98.13 E-value=2.1e-05 Score=77.40 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=111.5
Q ss_pred hCCCHHHHHH--HhHHHHHHHH--HhhcccchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHH
Q psy2489 189 TRKNPYKYYV--NFFPAILTAF--ATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITS 264 (369)
Q Consensus 189 ~~~n~~~~l~--~i~~~ll~a~--~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA 264 (369)
.+.|+++.+. ++++.+++|+ |.+-.+..-| ..+.+|+-.++..+++++++ .+.|+|++++ +|
T Consensus 48 ~~~N~~~ala~gn~L~iIvFAil~Gial~~~~~~-~~~~~~~l~~v~~kiv~~Vm------------~~aPiGVfal-iA 113 (319)
T PRK14695 48 LVDSPVNALLTANYIGILSWAVIFGIAMREASKN-SKELLKTIADVTSKIVEWII------------NLAPFGILGL-VF 113 (319)
T ss_pred ccCCHHHHhHcCCcHHHHHHHHHHHHHHHHcchh-HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH-HH
Confidence 4689998877 8889888874 3222221112 23455555578899999999 9999999999 89
Q ss_pred HhhhccCccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-cc-Cchhhh-hhhhchhhhhhhhh-------------
Q psy2489 265 KLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFT-RK-NPYKYY-VNFFPAILTAFATS------------- 328 (369)
Q Consensus 265 ~~~~~~g~~lsl~~~~~~~l~s~gaagvpg~~~v~l~~vl~~-~g-~P~~~~-~~~~~alilafvd~------------- 328 (369)
+.++++|.+. +.++..++++.+.+..+. .++.++..... .| +|.+++ +..+++++++|.++
T Consensus 114 ~~v~~~G~~~-l~~l~~~v~~~~~~~~i~--~~vv~~~~~~~~~~~~p~~f~~~~~~~~~~~AfsT~SS~AtLP~~~~~~ 190 (319)
T PRK14695 114 KTISDKGVGS-LANYGILLVLLVTTMLFV--APVVNPLIAFFFMRRNPYPLVWNCLRVSGVTAFFTRSSATNIPVNMKLC 190 (319)
T ss_pred HHHHHhCHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 9999999886 777777777777766664 24455544433 34 888874 44778899997764
Q ss_pred -----------hccchhhhhhcchhH----HHHHHHHhhhccccc
Q psy2489 329 -----------SKDRVRTTVNLMGDC----YAVAVVDHLSRHELQ 358 (369)
Q Consensus 329 -----------~~d~~rt~~Nv~g~~----v~t~~va~~~~~~l~ 358 (369)
|.-+.+++.|..|++ +++.++++..|.+++
T Consensus 191 e~lGv~~~ia~fvlPLGatinmdG~aiy~~~~~iFiaq~~Gi~ls 235 (319)
T PRK14695 191 HDLGLNPDTYSVSIPLGSTINMAGVAITINLLTLVTVNTLGIPVD 235 (319)
T ss_pred HHcCcCcccEeeeeccchhhCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 678889999999984 667888888887654
No 20
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=97.43 E-value=0.0031 Score=60.82 Aligned_cols=238 Identities=15% Similarity=0.254 Sum_probs=143.9
Q ss_pred hccCCcchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH---HHHH
Q psy2489 84 TIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMT---VTMR 160 (369)
Q Consensus 84 ~a~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~---~l~~ 160 (369)
+.+.++++..-+..++++|+.++...+ +..+....++..|.+-+|-+ +|+-+|.++...+++. ..+ .+..
T Consensus 9 ~~~~~gsLv~qI~iGlvlGi~~a~~s~---~~a~~vgllG~lFv~aLkAv---APvLVf~LV~asIan~-k~gqkt~ir~ 81 (407)
T COG3633 9 RLLARGSLVKQILIGLVLGILLAIISP---PAAEAVGLLGTLFVGALKAV---APVLVFILVMASIANH-KKGQKTNIRP 81 (407)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCh---hHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh-hhccccccce
Confidence 446678888888999999999987644 34555778899999888776 8999999999888863 222 2211
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHH-----------------------HHHHHhCCCHHHHHH--HhHHHHHHHHHh---
Q psy2489 161 QLSKFVATSIGGFLVYHLI--VIQL-----------------------IYFLFTRKNPYKYYV--NFFPAILTAFAT--- 210 (369)
Q Consensus 161 ~l~~~~~~~~i~~~i~~~v--vlp~-----------------------i~~~~~~~n~~~~l~--~i~~~ll~a~~T--- 210 (369)
.+..|++..+.+.+..+.. .+|. ++. -.-.||...+. +....+..+++.
T Consensus 82 IivLYl~GTF~Aal~AVia~f~FP~~lvL~~~~~~~spP~gi~eVl~~Ll~-~~VdNPinAl~~aNyiGiLaWaiglG~A 160 (407)
T COG3633 82 IIVLYLLGTFSAALVAVIASFAFPSTLVLASSAGDISPPSGIVEVLKSLLM-SLVDNPINALLNANYIGILAWAIGLGLA 160 (407)
T ss_pred eehHHHHHHHHHHHHHHHHhhcCceeEEEeccCCCCCCCccHHHHHHHHHH-HHhcCHHHHHhcCCchhhhHHHHHHhHH
Confidence 2334444444443332221 1222 111 13468887655 555555544332
Q ss_pred -h-cccchhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHH
Q psy2489 211 -S-SKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIG 288 (369)
Q Consensus 211 -~-SS~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~g 288 (369)
. .|+.+- ...+.+. +.-.+++.+++ .+.|+|++.+ ++..+++.|.+- ++.|...+..-.|
T Consensus 161 lrh~s~~tk-~~~~d~~---e~vs~iV~~iI------------~fAP~GIfgL-VasT~a~tG~~a-L~gYa~LL~vLvg 222 (407)
T COG3633 161 LRHASDTTK-NLVNDLS---EAVSKIVKVVI------------RFAPIGIFGL-VASTLAETGFGA-LWGYAQLLAVLVG 222 (407)
T ss_pred HHhccHhHH-HHHHHHH---HHHHHHHheee------------eccCchhhHH-HHHHHHhhhHHH-HHHHHHHHHHHHH
Confidence 2 233222 2233333 34567899999 9999999999 889988899875 6666654444444
Q ss_pred hhhhhHHHHHHHHHH--HHhccCchhhh-hhhhchhhhhhhhh------------------------hccchhhhhhcch
Q psy2489 289 GFLVYHLIVIQLIYF--LFTRKNPYKYY-VNFFPAILTAFATS------------------------SKDRVRTTVNLMG 341 (369)
Q Consensus 289 aagvpg~~~v~l~~v--l~~~g~P~~~~-~~~~~alilafvd~------------------------~~d~~rt~~Nv~g 341 (369)
.--.. .+++-+.+ +...++|.... .-.+|.=..+|.+| .--+.++++|+-|
T Consensus 223 ~Mlfv--a~VVNpliv~~kiRrNPyPLV~~ClReSg~tAFFTRSSAANIPVNm~Lc~kl~ldedtYsvSIPLGAtINMaG 300 (407)
T COG3633 223 CMLFV--ALVVNPLIVYWKIRRNPYPLVLTCLRESGVTAFFTRSSAANIPVNMALCKKLGLDEDTYSVSIPLGATINMAG 300 (407)
T ss_pred HHHHH--HHHhccceEEEEecCCCcchhHHHhhhcCeEEEEecccccCCcccHHHHHHcCCCccceeEeeecCceeeccc
Confidence 32222 24443333 22235776542 33556667777776 2346788999998
Q ss_pred hHHHHHHH
Q psy2489 342 DCYAVAVV 349 (369)
Q Consensus 342 ~~v~t~~v 349 (369)
.++.-.+.
T Consensus 301 AAITItvL 308 (407)
T COG3633 301 AAITITVL 308 (407)
T ss_pred hhhhHHHH
Confidence 76655444
No 21
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=59.66 E-value=1.3e+02 Score=30.53 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhheeecccccc-c-cCccc--chhhhHHHHHHHHH
Q psy2489 190 RKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSI-H-MTGLA--QMTPIGVCSVITSK 265 (369)
Q Consensus 190 ~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~-n-~~Gta--iy~~~gv~alFiA~ 265 (369)
+.-|++.+--+.. ...|.++-....-+..+.+..||-++=+++-..+.-|+-+-+ . +.||. .|.. .-+ |++
T Consensus 40 g~~PidVilII~a-Vi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~lAP~vt~~~T~~~GTgh~a~s~---lPV-I~e 114 (364)
T PF03605_consen 40 GSPPIDVILIIMA-VITAAAALQAAGGLDYLVQIAEKILRKNPKYITFLAPLVTYLFTFLAGTGHVAYSL---LPV-IAE 114 (364)
T ss_pred CCCCHHHHHHHHH-HHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEEehhHHHHHHHHHhcccHHHHHh---hHH-HHH
Confidence 3457776643332 233334434455678888888888888888888888876542 2 45554 4433 223 566
Q ss_pred hhhccCccccHHHHH-HHHHHHHHhhhhhHHH-HHHHHHHHHh-ccCchhhhhhhhchhhhhhhhhhccchhhhhhcchh
Q psy2489 266 LISIEDMTVTMRQLS-KFVATSIGGFLVYHLI-VIQLIYFLFT-RKNPYKYYVNFFPAILTAFATSSKDRVRTTVNLMGD 342 (369)
Q Consensus 266 ~~~~~g~~lsl~~~~-~~~l~s~gaagvpg~~-~v~l~~vl~~-~g~P~~~~~~~~~alilafvd~~~d~~rt~~Nv~g~ 342 (369)
...+.|+.-+ ..+. ..+.+..|..+-|-++ .+.+..++.. .|.-.-. +++ +. --.-..|.
T Consensus 115 VA~~~~IRPe-RPls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~--------iL~-V~-------iPat~ig~ 177 (364)
T PF03605_consen 115 VAKENGIRPE-RPLSISVVASQIAITASPISAATVAMIAILAPAHGVSLLQ--------ILA-VT-------IPATLIGV 177 (364)
T ss_pred HHHHcCCCCC-CchHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHH--------HHH-hh-------HHHHHHHH
Confidence 6556776421 1122 2333444545555433 3334444544 3321111 111 10 01123344
Q ss_pred HHHHHHHHhhhccccccccCcc
Q psy2489 343 CYAVAVVDHLSRHELQDSVDDY 364 (369)
Q Consensus 343 ~v~t~~va~~~~~~l~~~~~~~ 364 (369)
.+++.+ +.+.|+|||+|+|-|
T Consensus 178 ~~~a~~-~~~~GkeL~~Dp~yq 198 (364)
T PF03605_consen 178 LVAAFV-SSRRGKELDDDPEYQ 198 (364)
T ss_pred HHHHHH-HHhcCCccccCHHHH
Confidence 444444 556777999998743
No 22
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=54.30 E-value=2.3e+02 Score=29.16 Aligned_cols=95 Identities=11% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhh
Q psy2489 139 IGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALP 218 (369)
Q Consensus 139 lgvf~lia~~i~~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP 218 (369)
+-+.+++++.+-++ |-+-+.+...+|+.....+.+...+. ..+.-.+.+.++.+.+-++.-|+ .+-+..+.+.|
T Consensus 98 ffIa~LI~GSILgm-~RklLika~~r~~p~il~g~~~a~~~--g~lvG~l~G~~~~~~i~~i~lPI---MgGG~GaGavP 171 (414)
T PF03390_consen 98 FFIAALIVGSILGM-NRKLLIKAFARFIPPILGGVIGAFLL--GGLVGMLFGYSFKDAIFYIVLPI---MGGGMGAGAVP 171 (414)
T ss_pred HHHHHHHHhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCHHHHHHHHHhhh---cCCCccccHhH
Confidence 34456788888887 55667688888888777766544332 22233356777776654433222 12334455566
Q ss_pred HHHHHHHhhcccch-hhhheeec
Q psy2489 219 ITFQVMDEKVKMSQ-QVTRFVLP 240 (369)
Q Consensus 219 ~~~~~~~~~~gv~~-~vv~~ViP 240 (369)
...-. ++..|.+. +..+..+|
T Consensus 172 LS~~Y-a~~~g~~~~~~~s~~ip 193 (414)
T PF03390_consen 172 LSQIY-AEALGQDAEEYFSQLIP 193 (414)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHH
Confidence 54433 22344443 33344444
No 23
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=35.77 E-value=4.7e+02 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhHhcccC
Q psy2489 91 TLGIIFFCIVFGAILGTLG 109 (369)
Q Consensus 91 iL~vlvfail~Gial~~~g 109 (369)
.++..+.|++.|+.++...
T Consensus 246 ~lP~f~~ami~g~ivrn~~ 264 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNIL 264 (368)
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 3566788888888887653
No 24
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=33.74 E-value=7.1e+02 Score=27.75 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy2489 119 FQTVYTIMLKILLIAIW---MTPIGVCSVITSKL 149 (369)
Q Consensus 119 l~~l~~i~~~ll~~im~---laPlgvf~lia~~i 149 (369)
+.+++-+|+-.+.+.-+ ..++...+.++|.+
T Consensus 19 l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~ 52 (764)
T TIGR02865 19 MAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAI 52 (764)
T ss_pred CCchHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 33444455444433333 34555666666644
No 25
>KOG1965|consensus
Probab=31.77 E-value=4.9e+02 Score=28.06 Aligned_cols=275 Identities=15% Similarity=0.209 Sum_probs=128.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCChhhHHHHHhhhhhccCCcchHHHHHHHHHHHhHhcccC-CchhHHH
Q psy2489 38 KDMEFRELLDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIIDGTATLGIIFFCIVFGAILGTLG-PKKKTVL 116 (369)
Q Consensus 38 g~~g~~al~~~~tt~al~~~glv~~~~~~~~~p~~~~il~~ip~n~~a~~~~~iL~vlvfail~Gial~~~g-~~~~~l~ 116 (369)
-|-..-++. ..++++..|++.+.++++-+ ..++|+ ....++.++++|..+...+ .+++.-.
T Consensus 30 e~~~~~al~---~~i~lL~l~iv~~hll~~~R------~~~l~E---------sv~~l~iGl~vG~vi~~~~~~~s~~~~ 91 (575)
T KOG1965|consen 30 EHASSVALL---FFILLLVLCIVLGHLLEETR------FRWLPE---------SVAALFIGLLVGLVIRYSSGGKSSRGK 91 (575)
T ss_pred hhcchhhHH---HHHHHHHHHHHHHHHHHhcc------ccccch---------HHHHHHHHHHHHHHhhhcCCCcccccc
Confidence 334444544 22333377888899976321 122333 4456788888898886542 2222000
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q psy2489 117 EFFQTV-YTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYK 195 (369)
Q Consensus 117 ~~l~~l-~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~ 195 (369)
+.. .+ .+.++.+ .+-|+.+-+ -.++ ..+...++++.++.-...++.+-.+++..++.....+..+.+
T Consensus 92 ~~~-~f~~~~ff~v-----LLPpiif~s-----gy~l-~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~ 159 (575)
T KOG1965|consen 92 RIL-VFSPDLFFLV-----LLPPIIFNS-----GYSL-KKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYD 159 (575)
T ss_pred eeE-EecccHHHHH-----hhchhhhcc-----ccee-chhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhccccccc
Confidence 100 11 1233333 144444321 2223 223344555544433333333322222222222112333332
Q ss_pred HHHHhHHHHHHHHHhhcccchhhHHH-HHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccC-cc
Q psy2489 196 YYVNFFPAILTAFATSSKSAALPITF-QVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIED-MT 273 (369)
Q Consensus 196 ~l~~i~~~ll~a~~T~SS~a~lP~~~-~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g-~~ 273 (369)
+ +..+-+.++ . =-+|+=|+.. +-++ .++++++...+|- |=+.=.|++++.+. -... +. ...+ .+
T Consensus 160 ~--~f~d~L~fG--a-liSATDPVtvLaIfn-el~vd~~Ly~LVF--GESvLNDAvsIVlf--~~i~---~~-~~~~~~~ 225 (575)
T KOG1965|consen 160 L--SFKDCLAFG--A-LISATDPVTVLAIFN-ELGVDPKLYTLVF--GESVLNDAVSIVLF--NTIQ---KF-QLGSLND 225 (575)
T ss_pred c--cHHHHHHHh--h-HhcccCchHHHHHHH-HhCCCcceeeeee--cchhccchhHHHHH--HHHH---HH-ccCCchh
Confidence 2 233333332 1 1255667654 4444 5899999988876 88888899997654 2222 11 1122 22
Q ss_pred ccHHHHH-HHHHHHHHhhhhhHHHHHHH-HHHHHh--c-cCch-hhhhhhhchhhhhhhhhhccchhhhhhcchhHHHHH
Q psy2489 274 VTMRQLS-KFVATSIGGFLVYHLIVIQL-IYFLFT--R-KNPY-KYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVA 347 (369)
Q Consensus 274 lsl~~~~-~~~l~s~gaagvpg~~~v~l-~~vl~~--~-g~P~-~~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~ 347 (369)
.+..+.+ .++-...|+.++ |.++-.+ +.++.. + .-|. |.... ++++...-+..+..-+.-+..-..+.+
T Consensus 226 ~~~~~~ig~Fl~~F~gS~~l-Gv~~GlisA~~lK~~~l~~~~~lE~al~----ll~sY~sY~lAE~~~lSGIvtVlFcGI 300 (575)
T KOG1965|consen 226 WTAFSAIGNFLYTFFGSLGL-GVAIGLISALVLKFLYLRRTPSLESALM----LLMSYLSYLLAEGCGLSGIVTVLFCGI 300 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCcHHHHHHH----HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 2222233 333333344333 2222212 222222 2 3554 33233 444544455666666666666777888
Q ss_pred HHHhhhcccccccc
Q psy2489 348 VVDHLSRHELQDSV 361 (369)
Q Consensus 348 ~va~~~~~~l~~~~ 361 (369)
..+|...+++.++-
T Consensus 301 ~msHYt~~NlS~~S 314 (575)
T KOG1965|consen 301 VMSHYTYHNLSGES 314 (575)
T ss_pred HHHHHHHhcCCHHH
Confidence 88888887776554
No 26
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=28.91 E-value=6.4e+02 Score=25.75 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHhHhcccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy2489 90 ATLGIIFFCIVFGAILGTLGPKK---KTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFV 166 (369)
Q Consensus 90 ~iL~vlvfail~Gial~~~g~~~---~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~~~l~~~~ 166 (369)
..++..+.|++.|+.++...++. +..-+.++.++++...+. +.++ ++++ ++.++. .+..
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlf-------------l~~A-lmsL-~L~~l~-~~a~-- 304 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLF-------------LAIA-LMSL-QLWELA-DLAG-- 304 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH-------------HHHH-HHhC-cHHHHH-HHHH--
Confidence 56788899999999998654322 222234555555544442 1112 4444 344442 2221
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHhhcccchhhhheeec
Q psy2489 167 ATSIGGFLVYHLIVIQ---LIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLP 240 (369)
Q Consensus 167 ~~~~i~~~i~~~vvlp---~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~gv~~~vv~~ViP 240 (369)
-..+-++.+..+... .+.+..-++| ++. .+...--.++++++....+ .+|+...|++|-+++ +-+++|
T Consensus 305 -Plliil~~q~i~~~l~~~fv~fr~mg~~-yda--aV~~ag~~G~~lGatptai-anm~av~~~yg~s~~-af~ivP 375 (398)
T TIGR00210 305 -PIALILLVQVMFMALYAIFVTFRLMGKD-YDA--AVLCAGHCGFGLGATPTAI-ANMQAVTERFGPSHQ-AFIVVP 375 (398)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhHHhccch-HHH--HHHhcccccccccchHHHH-HHHHHHHhccCCCCc-ceehhh
Confidence 111111111111110 1122234455 331 2222233446666554444 357888888887554 556666
No 27
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=27.20 E-value=5.4e+02 Score=24.28 Aligned_cols=129 Identities=14% Similarity=0.215 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cCCC-hhhHHHHHhhhh-----hccCCcchHHHHHHHHHHHhHhcccCCchhHHHHHH
Q psy2489 47 DGTATLGIIFFCIVFGAILGT-LGPK-KKTVLEFFQTVY-----TIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFF 119 (369)
Q Consensus 47 ~~~tt~al~~~glv~~~~~~~-~~p~-~~~il~~ip~n~-----~a~~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l 119 (369)
...+.+++ .+|-+.|.++++ +.++ ++.+.+.+-=.. +...+.+-..+++++++.|-.++.+=.-.+.+-++-
T Consensus 5 ~~iN~l~I-l~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~~ilslv~G~vIGe~~niek~in~~g 83 (228)
T COG1811 5 TIINALAI-LIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIMILLALVIGAVIGELINIEKRINNLG 83 (228)
T ss_pred hhHHHHHH-HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35677888 888888888774 4332 344443332111 222344555677889999988875421112222223
Q ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy2489 120 QTVYT---------IMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTM-RQLSKFVATSIGGFLVYHLI 179 (369)
Q Consensus 120 ~~l~~---------i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~-~~l~~~~~~~~i~~~i~~~v 179 (369)
+++++ -+.... .+-+.-|.++++.+..-.- +|...+. +++.-.+.+..++|.+++.+
T Consensus 84 ~~~~~~~~~~~f~e~fVta~-lLfcig~m~I~G~l~~Glt--GD~svLi~Ks~LDg~tAi~la~tlGigV 150 (228)
T COG1811 84 QKLEDKPGHGSFAEGFVTAI-LLFCIGSMGILGSLNEGLT--GDLSVLVTKSFLDGFTAIVLASTLGIGV 150 (228)
T ss_pred HHHHhCcCcchHHHHHHHHH-HHHHhcccchhhHHHHhhc--CCceEEehHHHHHHHHHHHHHHhhhHHH
Confidence 33332 232221 1234778888876654111 3332222 56666666666666655544
No 28
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=24.64 E-value=6e+02 Score=23.96 Aligned_cols=123 Identities=14% Similarity=0.210 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc-ccCCC-hhhHHHHHhhh---h--hccCCcchHHHHHHHHHHHhHhcccC---CchhHHH
Q psy2489 47 DGTATLGIIFFCIVFGAILG-TLGPK-KKTVLEFFQTV---Y--TIIDGTATLGIIFFCIVFGAILGTLG---PKKKTVL 116 (369)
Q Consensus 47 ~~~tt~al~~~glv~~~~~~-~~~p~-~~~il~~ip~n---~--~a~~~~~iL~vlvfail~Gial~~~g---~~~~~l~ 116 (369)
...++.|+ .+|=.+|.+++ ++.++ ++.+.+.+--. + +-.-+++-..++++|+++|-.++..= ++-+++.
T Consensus 4 tiiN~~aI-l~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~slvlG~iiGe~l~ie~~l~~l~ 82 (226)
T PF04474_consen 4 TIINALAI-LLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVILSLVLGTIIGELLDIEDRLERLG 82 (226)
T ss_pred hHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888 88888888876 44332 23333322211 1 22234456667789999999987542 2222222
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHH
Q psy2489 117 EFFQ----------TVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTM-RQLSKFVATSIGGF 173 (369)
Q Consensus 117 ~~l~----------~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~~~~~l~-~~l~~~~~~~~i~~ 173 (369)
+.++ .+.+-|... ..+-++-|.++++.+-.-.. +|.+-+. |+..-.+.+...++
T Consensus 83 ~~l~~k~~~~~~~~~f~~gFvta-sllfCvG~m~I~Gsi~~Gl~--gd~siL~~KsiLDg~taiifaa 147 (226)
T PF04474_consen 83 EKLEKKFGKSGGDSSFAEGFVTA-SLLFCVGAMAILGSIQDGLT--GDPSILLTKSILDGFTAIIFAA 147 (226)
T ss_pred HHHHHHccCCCCcccHHHHHHHH-HHHHHcchhHHHhHHHhHhc--CChHHHHHHHHHHHHHHHHHHH
Confidence 2232 222222222 23445778887766654222 3444443 44444444444443
No 29
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.96 E-value=59 Score=24.94 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=23.3
Q ss_pred hhHhhhcccccceeeeeehhhccccchhhhhhhcchhHHHHH
Q psy2489 5 LDEKVEMKEKDMEFSFVSSKMSADLDEKVEMKEKDMEFRELL 46 (369)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~g~~al~ 46 (369)
+.+|.+.-|++.|| .+....|+.||-=||.+.
T Consensus 17 i~~rLd~iEeKvEf----------~~~Ei~Qr~GkkiGRDiG 48 (70)
T PF04210_consen 17 IMKRLDEIEEKVEF----------TNAEIAQRAGKKIGRDIG 48 (70)
T ss_pred HHHHHHHHHHHHHh----------HHHHHHHHHhHHhhhHHH
Confidence 45666777888899 345556788888888887
No 30
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.68 E-value=4.1e+02 Score=25.61 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy2489 160 RQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKN 192 (369)
Q Consensus 160 ~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n 192 (369)
+.+|.......+.+.+..+.++|.++..+.+.+
T Consensus 274 ~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 274 RQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 677777666666556656667898887666665
No 31
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=20.29 E-value=1.1e+03 Score=25.20 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=44.5
Q ss_pred hhHHHHHHHhhcccchhhhheeecccccc-c-cCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHHHHHHhhhhhH
Q psy2489 217 LPITFQVMDEKVKMSQQVTRFVLPIGNSI-H-MTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYH 294 (369)
Q Consensus 217 lP~~~~~~~~~~gv~~~vv~~ViP~G~s~-n-~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l~s~gaagvpg 294 (369)
.|...--.. .+|++|+.+...--.|=++ | ..=+.-|.+ +.-- ..++|+.+..+++++..++=.--+-.+.
T Consensus 415 aPI~vPm~~-~lGisp~~t~~AyriGDs~tNiItP~~~y~~--lil~----~~~~y~k~~g~Gtl~s~mlPysi~~l~~- 486 (513)
T TIGR00819 415 APIFVPMFM-LAGFAPAFAQAAFRIADSSTLIIAPMMPFFG--LFLA----FLMKYKKDAGLGTLISLMLPYPAFFLIA- 486 (513)
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHhchHHHhhccCcchHH--HHHH----HHHHhccCCcHHHHHHHHHHHHHHHHHH-
Confidence 466555554 5777777765544333321 1 111234445 3222 2345898988999885444222111221
Q ss_pred HHHHHHHHHHHhc-cCchhh
Q psy2489 295 LIVIQLIYFLFTR-KNPYKY 313 (369)
Q Consensus 295 ~~~v~l~~vl~~~-g~P~~~ 313 (369)
-..+..++..+ |+|...
T Consensus 487 --w~~l~~~w~~~~glPlGp 504 (513)
T TIGR00819 487 --WIALFCAWVFVLGLPIGP 504 (513)
T ss_pred --HHHHHHHHHHHcCCCCCC
Confidence 22344455666 988754
Done!