Query psy2489
Match_columns 369
No_of_seqs 227 out of 1504
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:32:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 100.0 1.6E-65 5.3E-70 516.3 17.1 321 20-360 62-422 (422)
2 2nwl_A GLTPH, glutamate sympor 99.5 4.1E-13 1.4E-17 135.0 20.4 255 90-365 11-339 (422)
3 1waz_A MERF; protein structure 6.4 1.4E+02 0.0049 20.0 0.6 7 362-368 20-26 (46)
4 2pmr_A Uncharacterized protein 4.8 1.3E+02 0.0044 23.0 -0.5 14 1-14 1-14 (87)
5 3arc_T Photosystem II reaction 4.6 3E+02 0.01 17.0 1.2 10 91-100 13-22 (32)
6 2v50_A Multidrug resistance pr 4.5 1.1E+03 0.038 25.3 6.5 32 160-191 999-1030(1052)
7 4dx5_A Acriflavine resistance 4.3 2.8E+03 0.097 21.9 9.9 30 160-189 1001-1030(1057)
8 3aqp_A Probable secdf protein- 3.4 3E+03 0.1 20.9 9.0 33 160-192 695-727 (741)
9 3nd0_A SLL0855 protein; CLC fa 3.1 1.7E+03 0.057 21.5 6.0 40 87-129 24-63 (466)
10 4gof_A Small glutamine-rich te 2.3 7.8E+02 0.027 16.7 1.6 22 214-235 27-48 (52)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=100.00 E-value=1.6e-65 Score=516.29 Aligned_cols=321 Identities=24% Similarity=0.312 Sum_probs=293.5
Q ss_pred eeehhhc--cccchhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHhhc-----ccCCC------------hhhHHHH
Q psy2489 20 FVSSKMS--ADLDEKVEMKEKDMEFRELL--DGTATLGIIFFCIVFGAILG-----TLGPK------------KKTVLEF 78 (369)
Q Consensus 20 ~~~s~~~--~~~~~~~~~~~g~~g~~al~--~~~tt~al~~~glv~~~~~~-----~~~p~------------~~~il~~ 78 (369)
+++|.++ ++++.| |.||+|+|++. ..+|++|. .+|++++|+++ +.++. .+++.++
T Consensus 62 Vf~siv~gia~l~~~---~~gri~~~ti~~~~~tt~iA~-~igl~~~~~~~pg~g~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (422)
T 2nwl_A 62 VFASLVVGAASISPA---RLGRVGVKIVVYYLLTSAFAV-TLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDI 137 (422)
T ss_dssp HHHHHHHHTTSCTTT---THHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHHHGGG
T ss_pred HHHHHHHHHHhcchh---hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCccccccccccccccccCCcHHHHHHHH
Confidence 4477777 555533 89999999999 99999999 99999999998 22211 2688899
Q ss_pred Hhhhh-hccCCcchHHHHHHHHHHHhHhcccC--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2489 79 FQTVY-TIIDGTATLGIIFFCIVFGAILGTLG--------PKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKL 149 (369)
Q Consensus 79 ip~n~-~a~~~~~iL~vlvfail~Gial~~~g--------~~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i 149 (369)
+|+|+ ++++++|++|+++||+++|+++.+.+ |+++++.++++.++++++|+++|+||++|+|+|+++++++
T Consensus 138 iP~N~~~a~a~~~~L~vivfai~~Gial~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~kiv~~im~laPigvf~lia~~~ 217 (422)
T 2nwl_A 138 VPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVM 217 (422)
T ss_dssp SCSCHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HhhChHHHHhhhchHHHHHHHHHHHHHHHHcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999987 6778999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHhhcccchhhHHHHHHHhhcc
Q psy2489 150 ISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKVK 229 (369)
Q Consensus 150 ~~~~~~~~l~~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n~~~~l~~i~~~ll~a~~T~SS~a~lP~~~~~~~~~~g 229 (369)
++ +|.+.+ .++++|++++|+++++|.++++|.+++ ++|+||++++|+++|++++||+|+||++++|.++||+|| +|
T Consensus 218 ~~-~g~~~l-~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~~np~~~~k~~~~a~~~Af~T~SS~AtLPv~m~~~~~-lG 293 (422)
T 2nwl_A 218 AE-QGVHVV-GELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKE-MG 293 (422)
T ss_dssp TT-TGGGCC-THHHHHHHHHHHHHHHHHHHTHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TT
T ss_pred HH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhccHHhHHHHHHHHHHH-cC
Confidence 98 477777 799999999999999999999999888 899999999999999999999999999999999999998 99
Q ss_pred cchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHH
Q psy2489 230 MSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS----KFVATSIGGFLVYHLIVIQLIYFLF 305 (369)
Q Consensus 230 v~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~----~~~l~s~gaagvpg~~~v~l~~vl~ 305 (369)
++|+++++++|+|+|+|||||++|.+ ++++|+||+ ||+|+|++|++ .++++|+|++|+||+++++++.+++
T Consensus 294 v~~~i~~fvlPlGatinmdGtaiy~~--~~aifiaq~---~Gi~l~~~~~l~ii~~~~l~s~GaaGVPg~g~v~~~~vl~ 368 (422)
T 2nwl_A 294 ISEGIYSFTLPLGATINMDGTALYQG--VCTFFIANA---LGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLH 368 (422)
T ss_dssp CCHHHHHHHHHHHTTSCCHHHHHHHH--HHHHHHHHH---HTCCCCSSCCHHHHHHHHHHHHHSCSSSSHHHHHHHHHHH
T ss_pred cCcceeeEEeechhhhCCCchHHHHH--HHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHH
Confidence 99999999999999999999999999 999999999 99999999988 7889999999999999999999999
Q ss_pred hccCchh------hhhhhhchhhhhhhhhhccchhhhhhcchhHHHHHHHHhhhccccccc
Q psy2489 306 TRKNPYK------YYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRHELQDS 360 (369)
Q Consensus 306 ~~g~P~~------~~~~~~~alilafvd~~~d~~rt~~Nv~g~~v~t~~va~~~~~~l~~~ 360 (369)
.+|+|.| + .+ ++++ +||++||+||++||+||++++.+++||++ ++|++
T Consensus 369 ~~GlP~~~~~~~~~-i~----lii~-id~~~D~~rTa~NV~Gd~~~a~iv~~~~~-~~~~~ 422 (422)
T 2nwl_A 369 SVGLPLTDPNVAAA-YA----MILG-IDAILDMGRTMVNVTGDLTGTAIVAKTEG-TLVPR 422 (422)
T ss_dssp HHTCCTTSTTHHHH-HH----HHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HcCCCchhhhhhhh-HH----HHHH-HHHHHhHHHHHHHHhhHHHHHHHHHHhhc-cccCC
Confidence 9999999 7 78 9999 99999999999999999999999999997 77764
No 2
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=99.53 E-value=4.1e-13 Score=134.99 Aligned_cols=255 Identities=19% Similarity=0.283 Sum_probs=186.0
Q ss_pred chHHHHHHHHHHHhHhccc-CC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chHHH-HHHHH
Q psy2489 90 ATLGIIFFCIVFGAILGTL-GP--KKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIE--DMTVT-MRQLS 163 (369)
Q Consensus 90 ~iL~vlvfail~Gial~~~-g~--~~~~l~~~l~~l~~i~~~ll~~im~laPlgvf~lia~~i~~~~--~~~~l-~~~l~ 163 (369)
+...-++.++++|+.++.. ++ ..+...+.++.++++|.|+++|+ +.|+.+++++.+ +++++ ..+.+ .+++.
T Consensus 11 ~l~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~~G~lFi~llkmi--v~PLVf~siv~g-ia~l~~~~~gri~~~ti~ 87 (422)
T 2nwl_A 11 PVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKML--VMPIVFASLVVG-AASISPARLGRVGVKIVV 87 (422)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHhcchhhhhhHHHHHHH
Confidence 3333445666666665543 11 11223467899999999999999 999999999998 88763 22333 26888
Q ss_pred HHHHHHHHHHHHHHHHHH---HH----------------------HHHHHhCCCHHHHHH--HhHHHHHHHH----Hhhc
Q psy2489 164 KFVATSIGGFLVYHLIVI---QL----------------------IYFLFTRKNPYKYYV--NFFPAILTAF----ATSS 212 (369)
Q Consensus 164 ~~~~~~~i~~~i~~~vvl---p~----------------------i~~~~~~~n~~~~l~--~i~~~ll~a~----~T~S 212 (369)
+|..+..++..+.+.+.. |. .+....|.||++.+. ++.+.+++|+ +.+.
T Consensus 88 ~~~~tt~iA~~igl~~~~~~~pg~g~~~~~~~~~~~~~~~~~~~~~l~~~iP~N~~~a~a~~~~L~vivfai~~Gial~~ 167 (422)
T 2nwl_A 88 YYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITY 167 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCSCCCCCCCCCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCCcHHHHHHHHHhhChHHHHhhhchHHHHHHHHHHHHHHHH
Confidence 888888888877665521 11 233345789998776 7888887774 2222
Q ss_pred cc--------chhhHHHHHHHhhcccchhhhheeeccccccccCcccchhhhHHHHHHHHHhhhccCccccHHHHHHHHH
Q psy2489 213 KS--------AALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVA 284 (369)
Q Consensus 213 S~--------a~lP~~~~~~~~~~gv~~~vv~~ViP~G~s~n~~Gtaiy~~~gv~alFiA~~~~~~g~~lsl~~~~~~~l 284 (369)
.. ..-....+.+++-.++..+++++++ .|.|+|++++ +++.++++|.+. +.++..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~kiv~~im------------~laPigvf~l-ia~~~~~~g~~~-l~~l~~~i~ 233 (422)
T 2nwl_A 168 LMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM------------QYAPIGVFAL-IAYVMAEQGVHV-VGELAKVTA 233 (422)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TSHHHHHHHH-HHHHHTTTGGGC-CTHHHHHHH
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 21 2223456777777789999999999 8999999999 788888899875 778888888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhcc-Cchhhhhhhhchhhhhhhhh------------------------hccchhhhhhc
Q psy2489 285 TSIGGFLVYHLIVIQLIYFLFTRK-NPYKYYVNFFPAILTAFATS------------------------SKDRVRTTVNL 339 (369)
Q Consensus 285 ~s~gaagvpg~~~v~l~~vl~~~g-~P~~~~~~~~~alilafvd~------------------------~~d~~rt~~Nv 339 (369)
+.+.+..+. .++.++.++...| +|.++++..++++++||.++ |.-+.+++.|.
T Consensus 234 ~~~~~~~i~--~~vv~~~~~~~~~~np~~~~k~~~~a~~~Af~T~SS~AtLPv~m~~~~~lGv~~~i~~fvlPlGatinm 311 (422)
T 2nwl_A 234 AVYVGLTLQ--ILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINM 311 (422)
T ss_dssp HHHHHHHHH--HHHTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHcCcCcceeeEEeechhhhCC
Confidence 888887776 3566766665445 99999889999999998775 67788999999
Q ss_pred chh----HHHHHHHHhhhccccccccCccc
Q psy2489 340 MGD----CYAVAVVDHLSRHELQDSVDDYV 365 (369)
Q Consensus 340 ~g~----~v~t~~va~~~~~~l~~~~~~~~ 365 (369)
.|. ++++.++++..+.++ +..||.
T Consensus 312 dGtaiy~~~~aifiaq~~Gi~l--~~~~~l 339 (422)
T 2nwl_A 312 DGTALYQGVCTFFIANALGSHL--TVGQQL 339 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC--CSSCCH
T ss_pred CchHHHHHHHHHHHHHHhCCCC--CHHHHH
Confidence 997 467889999998765 455554
No 3
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=6.42 E-value=1.4e+02 Score=19.96 Aligned_cols=7 Identities=71% Similarity=1.212 Sum_probs=3.8
Q ss_pred CccccCC
Q psy2489 362 DDYVLFP 368 (369)
Q Consensus 362 ~~~~~~~ 368 (369)
.|||+||
T Consensus 20 LDyVLlP 26 (46)
T 1waz_A 20 LDYVLLP 26 (46)
T ss_dssp CCCCSCC
T ss_pred HHHHHHH
Confidence 3555555
No 4
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=4.80 E-value=1.3e+02 Score=22.95 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=5.7
Q ss_pred CCcchhHhhhcccc
Q psy2489 1 MSADLDEKVEMKEK 14 (369)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (369)
|.+||+||++.-.+
T Consensus 1 m~~~l~Eki~kYi~ 14 (87)
T 2pmr_A 1 MSLDCRERIEKDLE 14 (87)
T ss_dssp ----CHHHHHHHHH
T ss_pred CcchHHHHHHHHHH
Confidence 56677777654433
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.62 E-value=3e+02 Score=17.00 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q psy2489 91 TLGIIFFCIV 100 (369)
Q Consensus 91 iL~vlvfail 100 (369)
.+++++||+.
T Consensus 13 tlgiiFFAI~ 22 (32)
T 3arc_T 13 IIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 3445555543
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=4.49 E-value=1.1e+03 Score=25.34 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy2489 160 RQLSKFVATSIGGFLVYHLIVIQLIYFLFTRK 191 (369)
Q Consensus 160 ~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~ 191 (369)
+.++..+....+.+.+..++++|.++..+.+.
T Consensus 999 ~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 999 HAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66776655555555555566788876554443
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=4.26 E-value=2.8e+03 Score=21.94 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2489 160 RQLSKFVATSIGGFLVYHLIVIQLIYFLFT 189 (369)
Q Consensus 160 ~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~ 189 (369)
+.++..+....+.+.+..++++|.++..+.
T Consensus 1001 ~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~ 1030 (1057)
T 4dx5_A 1001 NAVGTGVMGGMVTATVLAIFFVPVFFVVVR 1030 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667766555555555555557787766543
No 8
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=3.39 E-value=3e+03 Score=20.89 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy2489 160 RQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKN 192 (369)
Q Consensus 160 ~~l~~~~~~~~i~~~i~~~vvlp~i~~~~~~~n 192 (369)
+.++..+....+...+..+.+.|.++..+.+++
T Consensus 695 ~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~ 727 (741)
T 3aqp_A 695 RDFALAIFVGIFVGTYSSIYVVSALVVAWKNRR 727 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 566665554444444445557787766554443
No 9
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=3.13 E-value=1.7e+03 Score=21.52 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCcchHHHHHHHHHHHhHhcccCCchhHHHHHHHHHHHHHHHH
Q psy2489 87 DGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKI 129 (369)
Q Consensus 87 ~~~~iL~vlvfail~Gial~~~g~~~~~l~~~l~~l~~i~~~l 129 (369)
.+.+.+..++.++++|+..+...- -+...++.+++.....
T Consensus 24 ~~~~~~~l~l~~~liGi~~Gl~~~---~f~~~l~~~~~~~~~~ 63 (466)
T 3nd0_A 24 ARSLHPRTLVAAIVVGLITGVLGA---GFKSAVNNMLQWRSQL 63 (466)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 355677788889999988764321 2233345555555444
No 10
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=2.29 E-value=7.8e+02 Score=16.68 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=17.9
Q ss_pred cchhhHHHHHHHhhcccchhhh
Q psy2489 214 SAALPITFQVMDEKVKMSQQVT 235 (369)
Q Consensus 214 ~a~lP~~~~~~~~~~gv~~~vv 235 (369)
...+.+.++|+++.++++++-.
T Consensus 27 ~ESleVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 27 QESLEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHcCCCcccc
Confidence 4568889999999999987643
Done!