RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2489
(369 letters)
>gnl|CDD|215884 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 388
Score = 137 bits (347), Expect = 4e-37
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 33/274 (12%)
Query: 91 TLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLI 150
L +I F I+FG L LG K K +L+F +++ +++K++ + + PIGV ++I + +
Sbjct: 136 VLQVIVFAILFGIALAALGEKGKPLLKFLESLNEVIMKVVNWVMKLAPIGVFALIANTVG 195
Query: 151 SIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFAT 210
+ T+ L KFV T ++ +V L+ T NP+K+ PA+LTAF+T
Sbjct: 196 TFG--LGTLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLNPFKFLKKILPALLTAFST 253
Query: 211 SSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIE 270
+S +A LP+T + ++ + +S+ + FVLP+G +I+M G A + V ++ ++ ++
Sbjct: 254 ASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTAIY--LAVAAIFIAQAYGVD 311
Query: 271 DMTVTMRQLSKFVATSI----------GGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPA 320
+++ QL + T+ GG LV +V+ +
Sbjct: 312 ---LSLGQLLLLILTATLASIGAAGVPGGGLVALALVLSA--------------LGLPVE 354
Query: 321 ILTAFATSSK--DRVRTTVNLMGDCYAVAVVDHL 352
+ + D RT VN+ GD A +V L
Sbjct: 355 GIALILAIDRILDMFRTAVNVTGDAAAAVIVAKL 388
Score = 59.1 bits (144), Expect = 1e-09
Identities = 51/271 (18%), Positives = 102/271 (37%), Gaps = 56/271 (20%)
Query: 95 IFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIED 154
I +V G +LG P+ L+ ++ +LK+L++ P+ S+++ + S+ D
Sbjct: 5 ILIGLVLGVLLGLFFPELAGWLKPLGDLFINLLKMLVV-----PLVFFSIVSG-IASLGD 58
Query: 155 M---------TVTMRQLSKFVATSIGGFLVY---------HLIVIQLIYFLFTRKNPYKY 196
T+ ++ +A IG + + +
Sbjct: 59 GKKLGKLGGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLLSAASAESAKTLEVPSLLDF 118
Query: 197 YVNFFP------------------AILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFV 238
+N P AIL A ++ + ++ ++ +V +V
Sbjct: 119 LLNIIPSNIFAALAEGNVLQVIVFAILFGIALAALGEKGKPLLKFLESLNEVIMKVVNWV 178
Query: 239 LPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVI 298
+ ++ PIGV ++I + + + T+ L KFV T ++ +V
Sbjct: 179 M------------KLAPIGVFALIANTVGTFG--LGTLGSLGKFVLTVYLALAIHLFVVY 224
Query: 299 QLIYFLFTRKNPYKYYVNFFPAILTAFATSS 329
L+ T NP+K+ PA+LTAF+T+S
Sbjct: 225 PLLLKFLTGLNPFKFLKKILPALLTAFSTAS 255
>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
and conversion].
Length = 415
Score = 106 bits (266), Expect = 2e-25
Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 34/284 (11%)
Query: 91 TLGIIFFCIVFGAILGTLGPKKK-TVLEFFQTVYTIMLKILLIAIWMTPIGVCSVI--TS 147
L I+FF I+FG L LG K K V F+++ M K+ + + PIGV ++ T
Sbjct: 144 VLQILFFAILFGLALAALGEKGKPPVENLFESLSEAMFKVTNFVMRLAPIGVFGLMAFTV 203
Query: 148 KLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTA 207
+ L K V G L++ +V+ L+ L + +P+K+ A+L A
Sbjct: 204 AKYGFGSLL----SLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFLRYISEALLLA 259
Query: 208 FATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLI 267
F+TSS A LP+T + ++ + + + + FV+P+G + ++ G A + ++ ++
Sbjct: 260 FSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLGYTFNLDGTAIY--QTLAALFIAQAY 317
Query: 268 SIEDMTVTMRQLSKFVATSI----------GGFLVYHLIVIQLIYFLFTRKNPYKYYVNF 317
I +++ Q + ++ GG LV + + +
Sbjct: 318 GIP---LSLGQQLTLLLVAMLASKGAAGVPGGGLVVLAATLSSVGL----------PLEG 364
Query: 318 FPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDHLSRHELQDSV 361
IL D RT N+ GD A VV E D+V
Sbjct: 365 LALILGIDRF--LDMARTATNVTGDAVATVVVAKWEGEEKADAV 406
>gnl|CDD|224736 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General
function prediction only].
Length = 458
Score = 58.9 bits (143), Expect = 1e-09
Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 84 TIIDGTATLGIIFFCIVFGAILGTLGPKK----KTVLEFFQTVYTIMLKILLIAIWMTPI 139
T + T+ + ++ F G L K + T+ +I++K++ + I +TP
Sbjct: 180 TGANPTSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPY 239
Query: 140 GVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVN 199
GV +++T K+++ ++ ++ S VA+ I F+++ V+ I NP KY+
Sbjct: 240 GVLALMT-KVVATSNLEDIIKLGSFIVASYIAIFIMF---VVHGILLALNGVNPIKYFKK 295
Query: 200 FFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTP 255
+P + AF + S +A +P+ + K+ + + + F G +I G A + P
Sbjct: 296 VWPVLTFAFTSRSSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGCAGIYP 351
Score = 30.8 bits (70), Expect = 1.2
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 222 QVMDEKVKMSQQVTRFVLPIGNSIHM---TGLAQMTPIGVCSVITSKLISIEDMTVTMRQ 278
++ + + ++ + + SI M + ++TP GV +++T K+++ ++ ++
Sbjct: 203 KLSKKDPEKGERFKAAIDTL-QSIVMKLVRLVIRLTPYGVLALMT-KVVATSNLEDIIKL 260
Query: 279 LSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSS 329
S VA+ I F+++ V+ I NP KY+ +P + AF + S
Sbjct: 261 GSFIVASYIAIFIMF---VVHGILLALNGVNPIKYFKKVWPVLTFAFTSRS 308
>gnl|CDD|226159 COG3633, SstT, Na+/serine symporter [Amino acid transport and
metabolism].
Length = 407
Score = 46.6 bits (111), Expect = 1e-05
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 92 LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLIS 151
+GI+ + I G L K ++ + ++K++ I PIG+ ++ S L
Sbjct: 148 IGILAWAIGLGLALRHASDTTKNLVNDLSEAVSKIVKVV---IRFAPIGIFGLVASTLA- 203
Query: 152 IEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAIL------ 205
E + ++ +A +G L L+V LI + R+NPY P +L
Sbjct: 204 -ETGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRNPY-------PLVLTCLRES 255
Query: 206 --TAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLA 251
TAF T S +A +P+ + +K+ + + +P+G +I+M G A
Sbjct: 256 GVTAFFTRSSAANIPVNMA-LCKKLGLDEDTYSVSIPLGATINMAGAA 302
>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
Length = 319
Score = 45.8 bits (108), Expect = 2e-05
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 11/200 (5%)
Query: 92 LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLIS 151
+GI+ + ++FG + K E +T+ + KI+ I + P G+ ++ +
Sbjct: 62 IGILSWAVIFGIAMREASKNSK---ELLKTIADVTSKIVEWIINLAPFGILGLV---FKT 115
Query: 152 IEDMTV-TMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAI-LTAFA 209
I D V ++ + + L +V LI F F R+NPY N +TAF
Sbjct: 116 ISDKGVGSLANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTAFF 175
Query: 210 TSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISI 269
T S + +P+ ++ + + ++ +P+G++I+M G+A I + +++T + I
Sbjct: 176 TRSSATNIPVNMKLCHD-LGLNPDTYSVSIPLGSTINMAGVA--ITINLLTLVTVNTLGI 232
Query: 270 EDMTVTMRQLSKFVATSIGG 289
T LS A S G
Sbjct: 233 PVDFATAFVLSVVAAISACG 252
>gnl|CDD|234968 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.
Length = 428
Score = 44.9 bits (107), Expect = 4e-05
Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 50/217 (23%)
Query: 84 TIIDGTAT---LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIG 140
T++ A+ L ++ F ++FG L LG K K V +F +++ ++ I+ + + + PIG
Sbjct: 140 TVVGAFASGDILQVLLFAVLFGFALARLGEKGKPVFDFIESLSHVLFGIVNMIMKLAPIG 199
Query: 141 VCSVITSKLISIEDMTV------TMRQLSKFVATSIGGFLVYHLIVIQLI--YFLFTRKN 192
+ T+ ++ QL + + +++ +V+ I F +
Sbjct: 200 AFGAMA--------FTIGKYGVGSLVQLGQLIGCFYITCILFVFVVLGAIARLTGF---S 248
Query: 193 PYKYYVNFFPAILTAFATSSKSAALPITFQVMD--EKVKMSQQVTRFVLPIGNS------ 244
+K+ +L TSS +ALP ++M+ EK+ + V V+P G S
Sbjct: 249 IFKFIRYIKEELLIVLGTSSSESALP---RMMEKMEKLGCKKSVVGLVIPTGYSFNLDGT 305
Query: 245 ----------------IHMTGLAQMTPIGVCSVITSK 265
++ Q+T + V ++TSK
Sbjct: 306 SIYLTMAAVFIAQATNTPLSIGHQITLLAV-LLLTSK 341
Score = 31.4 bits (72), Expect = 0.70
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 19/85 (22%)
Query: 52 LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIIDGTATLGIIFFCI------VFGAI- 104
L ++ F ++FG L LG K K V +F +++ ++ GI+ + FGA+
Sbjct: 151 LQVLLFAVLFGFALARLGEKGKPVFDFIESLSHVL-----FGIVNMIMKLAPIGAFGAMA 205
Query: 105 -------LGTLGPKKKTVLEFFQTV 122
+G+L + + F+ T
Sbjct: 206 FTIGKYGVGSLVQLGQLIGCFYITC 230
>gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.
Length = 437
Score = 44.8 bits (106), Expect = 5e-05
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 92 LGIIFFCIVFGAILGTLGPKKKT-VLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLI 150
L IIFF ++FG L +L + ++ F++V M K+ + + P+GV ++I +
Sbjct: 161 LPIIFFSVLFGLGLSSLPATHREPLVTVFRSVSETMFKVTHMVMRYAPVGVFALIAVTVA 220
Query: 151 SIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFAT 210
+ ++ L+K V L + L+V+ ++ L + + ++ A++T
Sbjct: 221 NFG--FASLWPLAKLVLLVYFAILFFALVVLGIVARLC-GLSIWILIRILKDELILAYST 277
Query: 211 SSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTG 249
+S LP + M E + +T FV+P G S ++ G
Sbjct: 278 ASSETVLPRIIEKM-EAYGAPKSITSFVVPTGYSFNLDG 315
>gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.
Length = 421
Score = 38.9 bits (91), Expect = 0.004
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 84 TIIDGTAT---LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIG 140
T +D A L ++ F ++FG+ L LG + K V + ++ +I+ I + P+G
Sbjct: 140 TAVDAFAKGDILQVLLFSVLFGSALSLLGERAKRVNRLIDELSHVLFRIMGFIIKLAPLG 199
Query: 141 VCSVI--TSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFL--FTRKNPYKY 196
V I T+ + +++QL VA V+ ++V+ + L F+ +Y
Sbjct: 200 VLGAIAFTTGKYGVG----SLKQLGMLVAVFYLTCFVFVVVVLGAVMRLAGFSVFKLIRY 255
Query: 197 YVNFFPAILTAFATSSKSAALPITFQVMD--EKVKMSQQVTRFVLPIGNSIHMTG 249
+L T+S A LP QVM E + + V+P G S ++ G
Sbjct: 256 ---LREELLIVLGTASSDAVLP---QVMRKLEHMGIKDSTVGLVIPTGYSFNLDG 304
>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.
Length = 402
Score = 38.3 bits (90), Expect = 0.005
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 92 LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIG----VCSVITS 147
+GI+ + I G L K V+ + ++K + I PIG V S +
Sbjct: 148 IGILAWAIGLGLALRHASDTTKNVVNDLSEAVSQIVKWV---IRFAPIGIFGLVASTLAE 204
Query: 148 KLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAIL-- 205
S + ++ +A +G L L+V LI F R+NPY P +
Sbjct: 205 TGFS------ALAGYAQLLAVLVGCMLFVALVVNPLIVFWKIRRNPY-------PLVFTC 251
Query: 206 ------TAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLA 251
TAF T S +A +P+ + EK+ + + +P+G +I+M G A
Sbjct: 252 LRESGVTAFFTRSSAANIPVNMA-LCEKLGLDEDTYSVSIPLGATINMAGAA 302
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase;
Provisional.
Length = 743
Score = 32.5 bits (74), Expect = 0.44
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 333 VRTTVNLMGDCY-AVAVVDHLSRHELQDSVDDYVLFPE 369
VR + DCY A+ +V RH L D DDYV P+
Sbjct: 279 VRIVAERLQDCYAALGIVHTHYRH-LPDEFDDYVANPK 315
>gnl|CDD|233484 TIGR01593, holin_tox_secr, toxin secretion/phage lysis holin. This
model describes one of the many mutally dissimilar
families of holins, phage proteins that act together
with lytic enzymes in bacterial lysis. This family
includes, besides phage holins, the protein TcdE/UtxA
involved in toxin secretion in Clostridium difficile and
related species [Protein fate, Protein and peptide
secretion and trafficking, Mobile and extrachromosomal
element functions, Prophage functions].
Length = 128
Score = 29.6 bits (67), Expect = 1.3
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 52 LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIIDGTATLGIIFFCIVFGAILGTLGPK 111
L ++ I+ I G L K L + + ++ ATL ++ F +L T G
Sbjct: 19 LTLLLVLIIIDFITGVLKAWKNKKLSSKKGIKGLVKKLATLILVILAHPFDVLLPTNG-- 76
Query: 112 KKTVLEFFQTVYTIMLKILLIAI 134
+Y + ++I
Sbjct: 77 ----FMLLLVIYNFYILNESLSI 95
>gnl|CDD|224735 COG1822, COG1822, Predicted archaeal membrane protein [Function
unknown].
Length = 349
Score = 30.4 bits (69), Expect = 1.5
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 2/113 (1%)
Query: 85 IIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSV 144
I F I G + + ++ ++ + + I I + +
Sbjct: 28 TILSLIIGPFALFFIYGFTGPFVAGKGIRLLRFIIDDIFLLLSLLSIFFILG--IQLLII 85
Query: 145 ITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYY 197
LI + + +L K I + LI I +I L N +
Sbjct: 86 GAIPLIPLAIRPLLNPKLKKLKYVLIFSSYLLPLIPIVVISGLIPILNYLTRF 138
>gnl|CDD|223836 COG0765, HisM, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 222
Score = 29.0 bits (66), Expect = 3.5
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 42 FRELLDGTA-TLGIIFFCIVFGAILGTL-------GPKKKTVLEFFQTVYT-IIDGTATL 92
LL G TL + IV G +LG L G K L + Y I GT L
Sbjct: 15 LPFLLKGLLVTLLLTLLSIVLGLVLGLLLALMRLSGNK---PLRWLARAYVEIFRGTPLL 71
Query: 93 GIIFFCIVFGAILGTLGPK 111
+FF ++ +L LG +
Sbjct: 72 VQLFF--IYFGLLPLLGIE 88
>gnl|CDD|234082 TIGR02997, Sig70-cyanoRpoD, RNA polymerase sigma factor,
cyanobacterial RpoD-like family. This family includes a
number of closely related sigma-70 (TIGR02937) factors
in the cyanobacteria. All appear most closely related to
the essential sigma-70 factor RpoD, and some score above
trusted to the RpoD C-terminal domain model (TIGR02393).
Length = 298
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 3 ADLDEKVEMKEKDMEFSFVSSKMSADLDEKVEMKEKDMEFRELLDGTATL 52
A++ E +E++ + + ++ LD V E+D E +LL+
Sbjct: 181 AEIAEALELEPEQVRELLQRARQPVSLDAPVG-DEEDTELGDLLEDDGES 229
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 29.3 bits (66), Expect = 3.9
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 43 RELLDGTATLGIIF-----FCIVFGAILGT-LGPKKKTVLEFFQTVYTI---IDGTATLG 93
+ L +G LG I I++G + G GP ++ +G
Sbjct: 398 KRLPEGLKKLGKILLYLGISTIIWGFLYGEFFGPAVLLSTLPIGLLFVYHGLDEGLLFSN 457
Query: 94 IIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIA--IWM-TPIGVCSVITSKLI 150
I+ ++ G + +LG +L F V + +K ++ +W+ +G+ +I
Sbjct: 458 ILILSLLIGVLHLSLG----LLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKW 513
Query: 151 SIEDMTVTMRQLSKFVATSIGGFLVYHLIVI 181
S+ + + F A I G LV LI++
Sbjct: 514 SV--PELLGMVGAMFGAFGILGLLVVGLILV 542
>gnl|CDD|151605 pfam11163, DUF2947, Protein of unknown function (DUF2947). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 153
Score = 28.4 bits (64), Expect = 4.0
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 62 GAILGTLGPKKKTVLEFFQTVYTIIDGTATLG 93
G +L +G K+K L+F +GT LG
Sbjct: 129 GPLL--IGKKRKQALQFHS------NGTVKLG 152
>gnl|CDD|225330 COG2610, GntT, H+/gluconate symporter and related permeases
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism].
Length = 442
Score = 28.7 bits (65), Expect = 5.7
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 50 ATLGIIFFCIVFGAILGT---LGPKKKTVLEFFQTVYTIIDGTATLGII--FFCIVFGAI 104
A +I +F +LG P + L+ G + I+ + I
Sbjct: 183 AIPTVIIAGPLFAKLLGRKIKALPAGEGSLKELDEKELPSFGVSLATILVPILLMALKTI 242
Query: 105 LGTLGPKK---KTVLEFFQTVYTIMLKILLIAIW 135
L PK VLEF +L LL+AI+
Sbjct: 243 ASLLLPKGSPALEVLEFLGNPVIALLIALLVAIY 276
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly
related to archaeal Holliday junction resolvase
[Nucleotide transport and metabolism].
Length = 175
Score = 27.8 bits (62), Expect = 6.3
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 5 LDEKVEMKEKDMEFSFVSSKMSADLDEKVEMKEKDMEFRELLD 47
L KVE K +++E + ++ ++E KE++ + +E ++
Sbjct: 27 LQGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIE 69
>gnl|CDD|131651 TIGR02602, 8TM_EpsH, exosortase. This family is designated
exosortase, and it is the predicted protein-sorting
transpeptidase for the PEP-CTERM protein-sorting signal
of many biofilm-producing Gram-negative bacteria. This
system is analogous to the sortase/LPXTG system found
mostly in Gram-positive bacteria. Members of this family
are integral membrane proteins with eight predicted
transmembrane helices in common, and with a triad of
invariant residues that matches the catalytic triad of
sortases. Some members of this family have long trailing
sequences past the region described by this model, which
in other species is a separate protein EpsI. This model
does not include the region of the first predicted
transmembrane region. The only partially characterized
member is EpsH of Methylobacillus sp. 12S, part of a
locus associated with biosynthesis of the
exopolysaccharide methanolan but itself not involved in
polysaccharide biosynthesis [Protein fate, Protein and
peptide secretion and trafficking].
Length = 241
Score = 28.1 bits (63), Expect = 6.5
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 240 PIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQ 299
+ + GLA + ++ S L ++++ L ++ GF + L++
Sbjct: 33 ELPSRPSSLGLALLVLGLAAYLLASVLSVTWMASLSLVALLAGSVLALFGFRAFRLLLFP 92
Query: 300 LIYFLFTRKNPYKYYVNFFPAI-LTAFATS 328
L+ LF P Y + P LTAFA
Sbjct: 93 LLLLLFAIPPPGYYAILTIPLQHLTAFAAV 122
>gnl|CDD|237216 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
C-like protein; Provisional.
Length = 477
Score = 28.3 bits (63), Expect = 6.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 90 ATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKI---------LLIAIWMTPIG 140
+T G I+F +VFG IL L K L FF+ KI ++IA+ ++ +
Sbjct: 14 STSGFIYFAVVFGLILVYLLFKNLLFLFFFKRYPKNTPKIGVINITTIAMIIAVAVSIVL 73
Query: 141 VCSVITSKLISI 152
V + L +
Sbjct: 74 VLMALAGGLAAA 85
>gnl|CDD|217426 pfam03209, PUCC, PUCC protein. This protein is required for
high-level transcription of the PUC operon.
Length = 402
Score = 28.1 bits (63), Expect = 8.0
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 91 TLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAIW 135
+GII I G +L P + +++ Q V + + +IA+W
Sbjct: 135 LVGIIVSAITVGWLLADFSPAR--LIQVIQGVALATMVLNVIALW 177
>gnl|CDD|206319 pfam14150, YesK, YesK-like protein. The YesK-like protein family
includes the B. subtilis YesK protein, which is
functionally uncharacterized. Its expression is
regulated by the sporulation-specific sigma factor
sigma-E. This family of proteins is found in bacteria.
Proteins in this family are approximately 100 amino
acids in length.
Length = 81
Score = 26.1 bits (58), Expect = 9.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 52 LGIIFFCIVFG--AILGTLGPKKK---------TVLEFFQTVYTI--IDG--TATLGIIF 96
LG I IVF A+L P K +L +Y+I I G LGI+
Sbjct: 4 LGAITAIIVFAVSALLRKKFPNKHPELILATILILLCLLTVLYSIFLIGGWEGMGLGILG 63
Query: 97 FCIVFGAILGTL 108
F ++ G ++G +
Sbjct: 64 FFVLIGTLIGYI 75
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.403
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,713,032
Number of extensions: 1856993
Number of successful extensions: 3120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3039
Number of HSP's successfully gapped: 186
Length of query: 369
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 271
Effective length of database: 6,590,910
Effective search space: 1786136610
Effective search space used: 1786136610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.7 bits)