RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2489
(369 letters)
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 405
Score = 72.5 bits (177), Expect = 1e-14
Identities = 55/282 (19%), Positives = 101/282 (35%), Gaps = 15/282 (5%)
Query: 75 VLEFFQTVYTIIDGTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIMLKILLIAI 134
A + I + + + +T+L+ + M KI+ +
Sbjct: 132 FGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVM 191
Query: 135 WMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPY 194
PIGV ++I + V + L ++++ + +P
Sbjct: 192 QYAPIGVFALIAYVMAEQGVHVVGELAKVTAA---VYVGLTLQILLVYFVLLKIYGIDPI 248
Query: 195 KYYVNFFPAILTAFATSSKSAALPITFQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMT 254
+ + A+LTAF T S S LP+T +V +++ +S+ + F LP+G +I+M G A
Sbjct: 249 SFIKHAKDAMLTAFVTRSSSGTLPVTMRVA-KEMGISEGIYSFTLPLGATINMDGTALYQ 307
Query: 255 PIGVCSVITSKLISIEDMT-----VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKN 309
+ + + + +T S A G + +V+ + T N
Sbjct: 308 GVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPN 367
Query: 310 PYKYYVNFFPAILTAFATSSKDRVRTTVNLMGDCYAVAVVDH 351
+ IL A D RT VN+ GD A+V
Sbjct: 368 V----AAAYAMILGIDAIL--DMGRTMVNVTGDLTGTAIVAK 403
Score = 35.5 bits (81), Expect = 0.009
Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 25/285 (8%)
Query: 55 IFFCIVFGAILGTL------GPKKKTVLEFFQTVYTIIDGTATLGIIFFCIVFGAILGTL 108
I ++ GAI+G + T ++ F ++ + + I+F +V GA ++
Sbjct: 5 ILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGA--ASI 62
Query: 109 GPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVAT 168
P + + +KI++ + + V I + + + A
Sbjct: 63 SPARLG---------RVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHL-------AV 106
Query: 169 SIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMDEKV 228
F + + I NP+ N FA A+ +EKV
Sbjct: 107 GGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIIL-GIAITYLMNSENEKV 165
Query: 229 KMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSIG 288
+ S + + + + V + + V + V ++
Sbjct: 166 RKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVY 225
Query: 289 GFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKDRV 333
L ++++ + +P + + A+LTAF T S
Sbjct: 226 VGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGT 270
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 31.3 bits (69), Expect = 0.18
Identities = 30/309 (9%), Positives = 72/309 (23%), Gaps = 11/309 (3%)
Query: 52 LGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIIDGTATLGIIFFCIVFGAILGTLGPK 111
L F+ + GA + ++ II +L + F +FG + LG +
Sbjct: 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73
Query: 112 KK-----------TVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMR 160
K F ++ +L+ + I + + ++E +
Sbjct: 74 KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133
Query: 161 QLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPIT 220
+ S F F + I + N + L + +
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193
Query: 221 FQVMDEKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQLS 280
+ V + L + + S T +
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT 253
Query: 281 KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKDRVRTTVNLM 340
T + G++ ++ F + + + + +
Sbjct: 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313
Query: 341 GDCYAVAVV 349
+
Sbjct: 314 EVVILKTLH 322
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.4 bits (57), Expect = 4.8
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 73 KTVLEFFQTVYTIIDGTATLGIIFFCIVFGAILGTLGPKKKTVL 116
+++L ++ + + G AT+ +F I +LG++ KK ++
Sbjct: 145 ESLLSTYENIIVKVQGDATVDAVFAKID--ELLGSILEKKNEMV 186
>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
T-cell [TaxId: 9606]}
Length = 273
Score = 25.6 bits (55), Expect = 9.4
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 6/173 (3%)
Query: 107 TLGPKKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLS-KF 165
T GP T F+ V+ K +++ + ++M S K
Sbjct: 82 TQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKL 141
Query: 166 VATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSKSAALPITFQVMD 225
++ + + HL+ ++ I TR + S ++ L F+V +
Sbjct: 142 LSEDVKSYYTVHLLQLENINSGETR----TISHFHYTTWPDFGVPESPASFLNFLFKVRE 197
Query: 226 EKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVCSVITSKLISIEDMTVTMRQ 278
+ I +G + + + I+I+ + + MR+
Sbjct: 198 SGSLNPDHGPAVIHCSAG-IGRSGTFSLVDTCLVLMEKGDDINIKQVLLNMRK 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.141 0.403
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,306,135
Number of extensions: 58757
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 12
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)