BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2490
(64 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5WUX7|CL065_DANRE Probable peptide chain release factor C12orf65 homolog,
mitochondrial OS=Danio rerio GN=si:ch211-275j6.5 PE=3
SV=1
Length = 156
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 38/47 (80%), Gaps = 3/47 (6%)
Query: 16 RKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+KY ++ +P + E++++E+FVRGSGPGGQA KT+NCVVL HIP+
Sbjct: 33 KKYQIE---LPVVHEEELEEQFVRGSGPGGQATNKTSNCVVLRHIPS 76
>sp|Q9H3J6|CL065_HUMAN Probable peptide chain release factor C12orf65, mitochondrial
OS=Homo sapiens GN=C12orf65 PE=2 SV=1
Length = 166
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + +DE +++E+FV+G GPGGQA KT+NCVVL HIP+
Sbjct: 48 DYPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPS 89
>sp|Q80VP5|CL065_MOUSE Probable peptide chain release factor C12orf65 homolog,
mitochondrial OS=Mus musculus PE=1 SV=1
Length = 184
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + ++E +++E+FV+G GPGGQA KT+NCVVL H+P+
Sbjct: 51 DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPS 92
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTD 63
RRH S AS + +LD IDEKD++ + R SG GGQ V KT + V +THIPT+
Sbjct: 211 RRHTSFASVVVSP-ELDDDIQINIDEKDLRIDYYRSSGAGGQHVNKTESAVRITHIPTN 268
>sp|Q2GKS8|RF1_ANAPZ Peptide chain release factor 1 OS=Anaplasma phagocytophilum (strain
HZ) GN=prfA PE=3 SV=1
Length = 359
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIPT
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 251
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S SS+ ++D +I+EKD++ + R SG GGQ V KT + V +THIPT
Sbjct: 211 RRHTSF-SSVMVSPEVDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPT 267
>sp|Q5PAH2|RF1_ANAMM Peptide chain release factor 1 OS=Anaplasma marginale (strain St.
Maries) GN=prfA PE=3 SV=1
Length = 359
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIPT
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 251
>sp|B9KIV2|RF1_ANAMF Peptide chain release factor 1 OS=Anaplasma marginale (strain
Florida) GN=prfA PE=3 SV=1
Length = 359
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIPT
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 251
>sp|Q2GGM5|RF1_EHRCR Peptide chain release factor 1 OS=Ehrlichia chaffeensis (strain
Arkansas) GN=prfA PE=3 SV=1
Length = 359
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIP+
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPS 251
>sp|Q5HB80|RF1_EHRRW Peptide chain release factor 1 OS=Ehrlichia ruminantium (strain
Welgevonden) GN=prfA PE=3 SV=1
Length = 359
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIP+
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPS 251
>sp|Q5FGZ2|RF1_EHRRG Peptide chain release factor 1 OS=Ehrlichia ruminantium (strain
Gardel) GN=prfA PE=3 SV=1
Length = 359
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIP+
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPS 251
>sp|Q3YS23|RF1_EHRCJ Peptide chain release factor 1 OS=Ehrlichia canis (strain Jake)
GN=prfA PE=3 SV=1
Length = 359
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIP+
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPS 251
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 5 RRHLSLASSLFR-KYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S AS + + D D + V I++KDI+ R SG GGQ V KT++ + +THIPT
Sbjct: 211 RRHTSFASVMVSPEVDDDINIV--IEDKDIRVDTYRASGAGGQHVNKTDSAIRITHIPT 267
>sp|A1W9H4|RF2_ACISJ Peptide chain release factor 2 OS=Acidovorax sp. (strain JS42)
GN=prfB PE=3 SV=1
Length = 367
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 6 RHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RH S AS LF ++D S I+ D++ R SG GGQ + KT++ V LTHIPT
Sbjct: 215 RHTSFAS-LFVYPEIDDSIEININPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPT 270
>sp|B9MBK7|RF2_ACIET Peptide chain release factor 2 OS=Acidovorax ebreus (strain TPSY)
GN=prfB PE=3 SV=1
Length = 367
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 6 RHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RH S AS LF ++D S I+ D++ R SG GGQ + KT++ V LTHIPT
Sbjct: 215 RHTSFAS-LFVYPEIDDSIEININPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPT 270
>sp|C0ZXD0|RF2_RHOE4 Peptide chain release factor 2 OS=Rhodococcus erythropolis (strain
PR4 / NBRC 100887) GN=prfB PE=3 SV=1
Length = 368
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+I+E DI+ R SGPGGQ+V T++ V LTHIPT
Sbjct: 230 EINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPT 265
>sp|C5CUX0|RF2_VARPS Peptide chain release factor 2 OS=Variovorax paradoxus (strain
S110) GN=prfB PE=3 SV=1
Length = 367
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 6 RHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RH S AS +F ++D S +I+ D++ R SG GGQ + KT++ V LTHIPT
Sbjct: 215 RHTSFAS-IFVYPEIDDSIEIEINPADVRTDTFRASGAGGQHINKTDSAVRLTHIPT 270
>sp|Q5GSS8|RF1_WOLTR Peptide chain release factor 1 OS=Wolbachia sp. subsp. Brugia
malayi (strain TRS) GN=prfA PE=3 SV=1
Length = 359
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTD 63
KI+EKD++ R SGPGGQ+V T++ V +TH+PT+
Sbjct: 217 KIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTE 253
>sp|A4F8R2|RF2_SACEN Peptide chain release factor 2 OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=prfB PE=3 SV=1
Length = 367
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 19 DLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+ D+ ++P EKDI+ R SGPGGQ+V T++ V +THIPT
Sbjct: 226 ETDHVEIP---EKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPT 266
>sp|Q3BUB7|RF2_XANC5 Peptide chain release factor 2 OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=prfB PE=3 SV=1
Length = 374
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64
RRH S +S+F ++D + I+ D++ R SG GGQ V KT + V +THIPT++
Sbjct: 212 RRHTSF-TSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNT 270
>sp|Q2GE03|RF1_NEOSM Peptide chain release factor 1 OS=Neorickettsia sennetsu (strain
Miyayama) GN=prfA PE=3 SV=1
Length = 367
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KI++KD++ R SGPGGQ+V T++ V +THIPT
Sbjct: 217 KINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 252
>sp|B2V5M0|RF2_SULSY Peptide chain release factor 2 OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=prfB PE=3 SV=1
Length = 369
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 5 RRHLSL-ASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S A S+ + D D KV +I+E+D++ R SG GGQ V KT++ V +THIPT
Sbjct: 211 RRHTSFSAVSVIPEIDEDI-KV-EINEEDLRIDTYRASGAGGQHVNKTDSAVRITHIPT 267
>sp|Q73IC2|RF1_WOLPM Peptide chain release factor 1 OS=Wolbachia pipientis wMel GN=prfA
PE=3 SV=1
Length = 359
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KI+EKD++ R SGPGGQ+V T++ V +TH+PT
Sbjct: 217 KIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPT 252
>sp|Q9A752|RF2_CAUCR Peptide chain release factor 2 OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=prfB PE=3 SV=1
Length = 371
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S AS+ D ++ +I+ D++ R SG GGQ + KT++ V LTHIPT
Sbjct: 207 RRHTSFASAWVYPVVDDNIEI-EINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPT 263
>sp|B8GWM3|RF2_CAUCN Peptide chain release factor 2 OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=prfB PE=3 SV=1
Length = 371
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S AS+ D ++ +I+ D++ R SG GGQ + KT++ V LTHIPT
Sbjct: 207 RRHTSFASAWVYPVVDDNIEI-EINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPT 263
>sp|Q9Y811|YONI_SCHPO Uncharacterized peptide chain release factor-like protein
C1105.18c, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1105.18c PE=3 SV=2
Length = 162
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 24 KVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
++ ++ E+DI+E F+ G GPGGQ + KT+ + HIPT
Sbjct: 43 QLERLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPT 81
>sp|B4SHV0|RF2_STRM5 Peptide chain release factor 2 OS=Stenotrophomonas maltophilia
(strain R551-3) GN=prfB PE=3 SV=1
Length = 374
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTD 63
RRH S +S+F ++D + I+ D++ R SG GGQ V KT + V +THIPT+
Sbjct: 212 RRHTSF-TSVFVSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTN 269
>sp|Q53915|RF2_STRCO Peptide chain release factor 2 OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=prfB PE=3 SV=2
Length = 368
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+IDE +++ R SGPGGQ V T++ V LTHIPT
Sbjct: 232 EIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPT 267
>sp|Q5NMC7|RF1_ZYMMO Peptide chain release factor 1 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=prfA PE=3 SV=1
Length = 358
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
IDE+D++ R SGPGGQ+V T++ V +THIP+
Sbjct: 216 IDERDLRIDIFRSSGPGGQSVNTTDSAVRITHIPS 250
>sp|A1SHH9|RF1_NOCSJ Peptide chain release factor 1 OS=Nocardioides sp. (strain BAA-499
/ JS614) GN=prfA PE=3 SV=1
Length = 357
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+IDE D++ R SGPGGQ+V T++ V +TH+PT
Sbjct: 215 QIDENDLRIDVFRSSGPGGQSVNTTDSAVRITHLPT 250
>sp|A0QU58|RF2_MYCS2 Peptide chain release factor 2 OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=prfB PE=1 SV=1
Length = 368
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+I E DI+ R SGPGGQ+V T++ V LTHIPT
Sbjct: 231 EIPENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPT 266
>sp|A5V9C3|RF1_SPHWW Peptide chain release factor 1 OS=Sphingomonas wittichii (strain
RW1 / DSM 6014 / JCM 10273) GN=prfA PE=3 SV=1
Length = 360
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
ID+KD++ R SGPGGQ+V T++ V +TH+PT
Sbjct: 218 IDDKDLRIDVYRSSGPGGQSVNTTDSAVRITHLPT 252
>sp|Q2JEW7|RF2_FRASC Peptide chain release factor 2 OS=Frankia sp. (strain CcI3) GN=prfB
PE=3 SV=1
Length = 366
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
ID+KD++ R SGPGGQ V T++ V +TH+PT
Sbjct: 228 IDDKDLRIDIFRSSGPGGQGVNTTDSAVRITHLPT 262
>sp|B4RCR3|RF2_PHEZH Peptide chain release factor 2 OS=Phenylobacterium zucineum (strain
HLK1) GN=prfB PE=3 SV=1
Length = 369
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S AS D ++ +I+ D++ R SG GGQ V KT++ V LTHIPT
Sbjct: 207 RRHTSFASVWVYPVIDDNIEI-EINPADVRTDTYRASGAGGQHVNKTDSAVRLTHIPT 263
>sp|Q0S2Q6|RF2_RHOSR Peptide chain release factor 2 OS=Rhodococcus sp. (strain RHA1)
GN=prfB PE=3 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
++E D++ R SGPGGQ+V T++ V LTHIPT
Sbjct: 231 VNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPT 265
>sp|C1B1L3|RF2_RHOOB Peptide chain release factor 2 OS=Rhodococcus opacus (strain B4)
GN=prfB PE=3 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
++E D++ R SGPGGQ+V T++ V LTHIPT
Sbjct: 231 VNENDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPT 265
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5)
GN=prfB PE=3 SV=1
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 17/66 (25%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDE--------KDIQERFVRGSGPGGQAVAKTNNCVV 56
RRH S A+ S +P+IDE +D++ R SG GGQ V KT+ V
Sbjct: 210 RRHTSFAA---------VSVMPQIDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVR 260
Query: 57 LTHIPT 62
+THIPT
Sbjct: 261 ITHIPT 266
>sp|B7J4M2|RF2_ACIF2 Peptide chain release factor 2 OS=Acidithiobacillus ferrooxidans
(strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=prfB PE=3
SV=1
Length = 365
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S AS +F ++D S I+ D++ R SG GGQ V KT++ + +TH+P+
Sbjct: 212 RRHTSFAS-VFVYPEIDDSFEVDINPADLKVDTYRASGAGGQHVNKTDSAIRITHVPS 268
>sp|Q04YD0|RF2_LEPBL Peptide chain release factor 2 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=prfB PE=3 SV=1
Length = 367
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S S + ++D KI+EKDI+ R SG GGQ V T++ V +TH+P+
Sbjct: 214 RRHTSFVS-VHVSPEIDDEIDIKIEEKDIRVDVYRSSGAGGQHVNTTDSAVRITHLPS 270
>sp|Q04V47|RF2_LEPBJ Peptide chain release factor 2 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=prfB PE=3 SV=1
Length = 367
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S S + ++D KI+EKDI+ R SG GGQ V T++ V +TH+P+
Sbjct: 214 RRHTSFVS-VHVSPEIDDEIDIKIEEKDIRVDVYRSSGAGGQHVNTTDSAVRITHLPS 270
>sp|B1VV08|RF2_STRGG Peptide chain release factor 2 OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=prfB PE=3 SV=1
Length = 368
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+IDE +++ R SGPGGQ V T++ V LTH+PT
Sbjct: 232 EIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPT 267
>sp|B3WDK7|RF1_LACCB Peptide chain release factor 1 OS=Lactobacillus casei (strain BL23)
GN=prfA PE=3 SV=1
Length = 359
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KID KDI+ R SG GGQ V KT++ V +THIP+
Sbjct: 217 KIDPKDIRTDVYRSSGAGGQHVNKTSSAVRMTHIPS 252
>sp|Q03A29|RF1_LACC3 Peptide chain release factor 1 OS=Lactobacillus casei (strain ATCC
334) GN=prfA PE=3 SV=1
Length = 359
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KID KDI+ R SG GGQ V KT++ V +THIP+
Sbjct: 217 KIDPKDIRTDVYRSSGAGGQHVNKTSSAVRMTHIPS 252
>sp|B3CL87|RF1_WOLPP Peptide chain release factor 1 OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=prfA PE=3 SV=1
Length = 363
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+I+EKD++ R SGPGGQ+V T++ V +TH+PT
Sbjct: 217 EIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPT 252
>sp|Q82D82|RF2_STRAW Peptide chain release factor 2 OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=prfB PE=3 SV=1
Length = 368
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+IDE +++ R SGPGGQ V T++ V LTH+PT
Sbjct: 232 EIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPT 267
>sp|C4LCN9|RF2_TOLAT Peptide chain release factor 2 OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=prfB PE=3 SV=1
Length = 365
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64
RRH S S+ F ++D +I+ D++ R SG GGQ V +T + V +THIPT++
Sbjct: 212 RRHTSFCSA-FVYPEIDEDVEIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTNT 270
>sp|B0SXB7|RF2_CAUSK Peptide chain release factor 2 OS=Caulobacter sp. (strain K31)
GN=prfB PE=3 SV=1
Length = 367
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+RH S AS+ D ++ I+ D++ R SG GGQ + KT++ V LTHIPT
Sbjct: 207 KRHTSFASAWVYPVVDDTIEI-DINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPT 263
>sp|Q65TB1|RF1_MANSM Peptide chain release factor 1 OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=prfA PE=3 SV=1
Length = 360
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 19 DLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+L S++P+I+ D++ R SG GGQ + KT++ V +THIPT
Sbjct: 208 ELPESEMPEINPADLRIDTYRASGAGGQHINKTDSAVRITHIPT 251
>sp|A1T6D1|RF2_MYCVP Peptide chain release factor 2 OS=Mycobacterium vanbaalenii (strain
DSM 7251 / PYR-1) GN=prfB PE=3 SV=1
Length = 368
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+I E D++ R SGPGGQ+V T++ V LTHIPT
Sbjct: 231 EIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPT 266
>sp|Q8ZHK4|RF2_YERPE Peptide chain release factor 2 OS=Yersinia pestis GN=prfB PE=3 SV=1
Length = 366
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTD 63
RRH S SS F ++D +I+ D++ R SG GGQ V KT + V +THIPT+
Sbjct: 213 RRHTSF-SSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTN 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,418,723
Number of Sequences: 539616
Number of extensions: 779147
Number of successful extensions: 2802
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1869
Number of HSP's gapped (non-prelim): 935
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)