Query psy2490
Match_columns 64
No_of_seqs 133 out of 1099
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:34:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 99.9 5.5E-27 1.9E-31 172.3 6.6 60 4-64 211-270 (365)
2 2rsm_A Probable peptide chain 99.9 3.6E-27 1.2E-31 151.5 3.8 57 7-64 23-79 (115)
3 2ihr_1 Peptide chain release f 99.9 1.9E-26 6.6E-31 169.5 6.1 60 4-64 199-258 (365)
4 2b3t_B RF-1, peptide chain rel 99.9 3.7E-26 1.3E-30 167.7 5.9 60 4-64 194-253 (360)
5 1rq0_A RF-1, peptide chain rel 99.9 3.3E-26 1.1E-30 167.2 5.2 59 4-64 171-229 (342)
6 1zbt_A RF-1, peptide chain rel 99.9 2.6E-26 8.8E-31 169.1 4.5 59 4-64 208-266 (371)
7 3d5a_X RF1, peptide chain rele 99.9 2.5E-26 8.6E-31 168.3 4.1 59 4-64 190-248 (354)
8 2jva_A Peptidyl-tRNA hydrolase 99.8 4.7E-20 1.6E-24 116.7 3.2 37 23-59 5-41 (108)
9 1j26_A Immature colon carcinom 99.8 1.4E-19 4.8E-24 115.1 4.9 41 23-63 12-53 (112)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.7 1.2E-18 4E-23 114.2 4.4 42 21-62 3-50 (140)
11 2ftc_B Mitochondrial ribosomal 53.3 10 0.00036 24.0 2.7 27 36-63 80-106 (136)
12 1t9f_A Protein 1D10; structura 37.2 71 0.0024 20.5 4.9 14 50-63 127-140 (187)
13 1vig_A Vigilin; RNA-binding pr 35.2 9.1 0.00031 20.9 0.2 18 42-59 21-40 (71)
14 3mal_A Stromal cell-derived fa 31.4 28 0.00097 22.8 2.2 14 50-63 139-152 (199)
15 1n4k_A Inositol 1,4,5-trisphos 31.3 29 0.001 24.7 2.4 13 51-63 76-88 (381)
16 3v2d_D 50S ribosomal protein L 25.7 34 0.0012 24.2 1.9 27 36-63 154-180 (276)
17 4hoy_A PTH, peptidyl-tRNA hydr 25.0 35 0.0012 22.6 1.8 22 24-47 95-116 (193)
18 2xoa_A Ryanodine receptor 1; m 24.8 62 0.0021 24.3 3.3 14 50-63 275-288 (559)
19 1wez_A HnRNP H', FTP-3, hetero 23.9 76 0.0026 17.6 2.9 23 41-63 4-26 (102)
20 2z2i_A PTH, peptidyl-tRNA hydr 22.7 42 0.0014 22.2 1.8 21 25-47 96-116 (191)
21 2pth_A Peptidyl-tRNA hydrolase 22.2 44 0.0015 22.1 1.8 21 25-47 94-114 (193)
22 4fyj_A PTH, peptidyl-tRNA hydr 21.9 44 0.0015 22.2 1.8 21 25-47 102-122 (199)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=99.93 E-value=5.5e-27 Score=172.30 Aligned_cols=60 Identities=37% Similarity=0.504 Sum_probs=56.4
Q ss_pred eeeEeCceeEEEeecccCCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEecCCCC
Q psy2490 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64 (64)
Q Consensus 4 ~r~~tS~a~V~V~~~~l~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi 64 (64)
.|||||||+|+|+ |+++....+.|+++||+++|+|||||||||||||+|+|+|+|+||||
T Consensus 211 gRrhTS~asV~V~-Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgi 270 (365)
T 1gqe_A 211 GRRHTSFSSAFVY-PEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGI 270 (365)
T ss_dssp CCEEEEEEEEEEE-ECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCC
T ss_pred CCCCcceeEEEEe-cCCCcccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeE
Confidence 5899999999999 77776667899999999999999999999999999999999999997
No 2
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.93 E-value=3.6e-27 Score=151.45 Aligned_cols=57 Identities=39% Similarity=0.747 Sum_probs=54.7
Q ss_pred EeCceeEEEeecccCCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEecCCCC
Q psy2490 7 HLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64 (64)
Q Consensus 7 ~tS~a~V~V~~~~l~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi 64 (64)
-||+|+|.|+ |+.|....++|+++||+|+|+|||||||||||||+|+|+|+|+||||
T Consensus 23 gts~~~v~v~-p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGi 79 (115)
T 2rsm_A 23 GMAASTVQVA-GRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGI 79 (115)
T ss_dssp CCCCCCCCCC-SCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCC
T ss_pred ccceEEEEec-cccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCc
Confidence 3899999999 88888888999999999999999999999999999999999999997
No 3
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=99.93 E-value=1.9e-26 Score=169.46 Aligned_cols=60 Identities=32% Similarity=0.466 Sum_probs=56.4
Q ss_pred eeeEeCceeEEEeecccCCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEecCCCC
Q psy2490 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64 (64)
Q Consensus 4 ~r~~tS~a~V~V~~~~l~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi 64 (64)
.|||||||+|+|+ |+++....+.|+++||+++|+|||||||||||||+|+|+|+|+||||
T Consensus 199 gRrhTS~asV~V~-P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgi 258 (365)
T 2ihr_1 199 GRRHTSFAGVEVI-PEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGI 258 (365)
T ss_dssp CCEEEEEEEEEEE-EECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTE
T ss_pred CCccceeEEEEEe-cCCCcccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeE
Confidence 5899999999999 77776677899999999999999999999999999999999999996
No 4
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=99.92 E-value=3.7e-26 Score=167.74 Aligned_cols=60 Identities=30% Similarity=0.467 Sum_probs=54.8
Q ss_pred eeeEeCceeEEEeecccCCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEecCCCC
Q psy2490 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64 (64)
Q Consensus 4 ~r~~tS~a~V~V~~~~l~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi 64 (64)
.|+|||||+|+|+ |+++....+.|+++||+++|+|||||||||||||+|+|+|+|+||||
T Consensus 194 gR~hTS~asV~V~-Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGi 253 (360)
T 2b3t_B 194 GRIHTSACTVAVM-PELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGI 253 (360)
T ss_dssp CCCEEEEEEEECC-BCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCC
T ss_pred CcCCccceEEEEe-cCcccccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeE
Confidence 5899999999999 67665322789999999999999999999999999999999999997
No 5
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=99.92 E-value=3.3e-26 Score=167.15 Aligned_cols=59 Identities=36% Similarity=0.420 Sum_probs=50.8
Q ss_pred eeeEeCceeEEEeecccCCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEecCCCC
Q psy2490 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64 (64)
Q Consensus 4 ~r~~tS~a~V~V~~~~l~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi 64 (64)
.|+|||||+|+|+ |+++. .++.|+++||+++|+|||||||||||||+|+|+|+|+||||
T Consensus 171 gR~hTS~asV~V~-Pe~~~-~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGi 229 (342)
T 1rq0_A 171 GRIHTSTATVAVL-PEIEE-KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGI 229 (342)
T ss_dssp CCCEEEEEEEEEE-ECCCG-GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCC
T ss_pred CCCcccceEEEEe-ccccc-cccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeE
Confidence 5899999999999 66665 45889999999999999999999999999999999999997
No 6
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=99.92 E-value=2.6e-26 Score=169.13 Aligned_cols=59 Identities=34% Similarity=0.442 Sum_probs=45.8
Q ss_pred eeeEeCceeEEEeecccCCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEecCCCC
Q psy2490 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64 (64)
Q Consensus 4 ~r~~tS~a~V~V~~~~l~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi 64 (64)
.|+|||||+|+|+ |+++. ..+.|+++||+++|+|||||||||||||+|+|+|+|+||||
T Consensus 208 gR~hTS~asV~V~-Pe~~e-v~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGi 266 (371)
T 1zbt_A 208 GRVHTSTATVLVM-PEVEE-VEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNI 266 (371)
T ss_dssp CCCEEEEEEEEEE-ECCCG-GGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTE
T ss_pred CcccccceEEEEe-ccccc-cccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeE
Confidence 5899999999999 67665 45889999999999999999999999999999999999996
No 7
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=99.92 E-value=2.5e-26 Score=168.34 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=54.8
Q ss_pred eeeEeCceeEEEeecccCCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEecCCCC
Q psy2490 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64 (64)
Q Consensus 4 ~r~~tS~a~V~V~~~~l~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h~ptgi 64 (64)
.|+|||||+|+|+ |+++. ..++|+++||+++|+|||||||||||||+|+|+|+|+||||
T Consensus 190 gR~hTS~asV~V~-P~~~~-~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgi 248 (354)
T 3d5a_X 190 GRIHTSTATVAVL-PKAEE-EDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGI 248 (354)
T ss_dssp CCCEEEEEEEEEE-ECCCC-CCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTE
T ss_pred CcCccCceEEEEe-ccCcc-cccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeE
Confidence 5899999999999 66665 56889999999999999999999999999999999999996
No 8
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.78 E-value=4.7e-20 Score=116.67 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=34.9
Q ss_pred CCCCccCCCCeEEEEEeecCCCcccccccCCeEEEEe
Q psy2490 23 SKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTH 59 (64)
Q Consensus 23 ~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~h 59 (64)
...+.|+++||+++|+|||||||||||||+|+|+|+|
T Consensus 5 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~ 41 (108)
T 2jva_A 5 SNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRF 41 (108)
T ss_dssp SSSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEE
T ss_pred ccccccChHHEEEEEEECCCCCCCCcCCCcceEEEEE
Confidence 4467899999999999999999999999999999999
No 9
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.78 E-value=1.4e-19 Score=115.07 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=37.9
Q ss_pred CCCCccCCCCeEEEEEeecCCCcccccccCCeEEEE-ecCCC
Q psy2490 23 SKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT-HIPTD 63 (64)
Q Consensus 23 ~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~-h~ptg 63 (64)
...+.|+++||+++|+|||||||||||||+|+|+|+ |+|+|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~ 53 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASA 53 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGC
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEecccc
Confidence 345679999999999999999999999999999998 99986
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.74 E-value=1.2e-18 Score=114.23 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=38.4
Q ss_pred CCCCCCccCCCCeEEEEEeecCCCcccccccCCeEEEE------ecCC
Q psy2490 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT------HIPT 62 (64)
Q Consensus 21 ~~~~~~~i~~~dl~~~~~rssGpGGQ~vNk~~s~V~l~------h~pt 62 (64)
.....+.|+++||+|+|+|||||||||||||+|+|+|+ |+|+
T Consensus 3 ~i~~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~ 50 (140)
T 4dh9_Y 3 VISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPE 50 (140)
T ss_dssp CCCSSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCS
T ss_pred cccCCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCH
Confidence 34566889999999999999999999999999999999 6887
No 11
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=53.25 E-value=10 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.631 Sum_probs=21.5
Q ss_pred EEEeecCCCcccccccCCeEEEEecCCC
Q psy2490 36 RFVRGSGPGGQAVAKTNNCVVLTHIPTD 63 (64)
Q Consensus 36 ~~~rssGpGGQ~vNk~~s~V~l~h~ptg 63 (64)
++.||+|--.|-+.|....+.|+ +|||
T Consensus 80 ~laRsAGt~a~ii~ke~~~~~vr-LPSG 106 (136)
T 2ftc_B 80 QYIRAAGTCGVLLRKVNGTAIIQ-LPSK 106 (136)
T ss_pred EEEEeCCCeEEEEEecCCEEEEE-CCCC
Confidence 58899999999999877766665 6776
No 12
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=37.19 E-value=71 Score=20.46 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=12.4
Q ss_pred ccCCeEEEEecCCC
Q psy2490 50 KTNNCVVLTHIPTD 63 (64)
Q Consensus 50 k~~s~V~l~h~ptg 63 (64)
+.++.+||+|..||
T Consensus 127 ~~~~~fRL~H~~tg 140 (187)
T 1t9f_A 127 LESEQFKLRHAVTG 140 (187)
T ss_dssp BTTSEEEEEETTTC
T ss_pred ecCCeEEEEECCcC
Confidence 46799999999998
No 13
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=35.16 E-value=9.1 Score=20.88 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=10.2
Q ss_pred CCCcccccc--cCCeEEEEe
Q psy2490 42 GPGGQAVAK--TNNCVVLTH 59 (64)
Q Consensus 42 GpGGQ~vNk--~~s~V~l~h 59 (64)
||||.++|+ -++.|+|..
T Consensus 21 G~gG~~I~~I~e~tg~~I~i 40 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRI 40 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEEC
T ss_pred CCCCccHHHHHHHHCCEEEE
Confidence 677777763 334555443
No 14
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=31.41 E-value=28 Score=22.79 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=12.6
Q ss_pred ccCCeEEEEecCCC
Q psy2490 50 KTNNCVVLTHIPTD 63 (64)
Q Consensus 50 k~~s~V~l~h~ptg 63 (64)
+..+.+||+|..||
T Consensus 139 ~~~~~fRL~H~~T~ 152 (199)
T 3mal_A 139 KQDQRVRLQHIDTS 152 (199)
T ss_dssp BTTCEEEEEETTTC
T ss_pred EcCCeEEEEECCCC
Confidence 56899999999998
No 15
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=31.34 E-value=29 Score=24.73 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=9.7
Q ss_pred cCCeEEEEecCCC
Q psy2490 51 TNNCVVLTHIPTD 63 (64)
Q Consensus 51 ~~s~V~l~h~ptg 63 (64)
.++.+||+|..||
T Consensus 76 ~~~~fRLrH~~Tg 88 (381)
T 1n4k_A 76 WNSLFRFKHLATG 88 (381)
T ss_dssp ---CEEEEETTTC
T ss_pred eCCeEEEEECCCC
Confidence 6799999999998
No 16
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=25.68 E-value=34 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=21.5
Q ss_pred EEEeecCCCcccccccCCeEEEEecCCC
Q psy2490 36 RFVRGSGPGGQAVAKTNNCVVLTHIPTD 63 (64)
Q Consensus 36 ~~~rssGpGGQ~vNk~~s~V~l~h~ptg 63 (64)
++.||+|--.|-+.+....+.|+ +|||
T Consensus 154 ~laRsAGt~A~ii~k~~~~~~vr-LPSG 180 (276)
T 3v2d_D 154 KLARAAGTSAQIQGREGDYVILR-LPSG 180 (276)
T ss_dssp EESCSTTCCEEEEEEETTEEEEE-CTTS
T ss_pred eEEEeCCCeEEEEEecCCEEEEE-CCCC
Confidence 67888888888888877777766 7776
No 17
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=24.97 E-value=35 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=16.0
Q ss_pred CCCccCCCCeEEEEEeecCCCccc
Q psy2490 24 KVPKIDEKDIQERFVRGSGPGGQA 47 (64)
Q Consensus 24 ~~~~i~~~dl~~~~~rssGpGGQ~ 47 (64)
.+++++...++++ ++||.||.|
T Consensus 95 DdldL~~G~irlk--~~G~~gGHN 116 (193)
T 4hoy_A 95 DELDMNPGVIRLK--TGGGHGGHN 116 (193)
T ss_dssp EETTSCTTCEEEE--ESCCCTTCH
T ss_pred eccccccCceeec--cCCCCCCcC
Confidence 3456777888886 588888864
No 18
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=24.83 E-value=62 Score=24.31 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.5
Q ss_pred ccCCeEEEEecCCC
Q psy2490 50 KTNNCVVLTHIPTD 63 (64)
Q Consensus 50 k~~s~V~l~h~ptg 63 (64)
+.++.+||+|..||
T Consensus 275 ~~~~~fRLrH~~TG 288 (559)
T 2xoa_A 275 RWGQPLRIRHVTTG 288 (559)
T ss_dssp CTTCCEEEEETTTC
T ss_pred EeCCeEEEEECCcC
Confidence 46799999999998
No 19
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.86 E-value=76 Score=17.65 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=15.9
Q ss_pred cCCCcccccccCCeEEEEecCCC
Q psy2490 41 SGPGGQAVAKTNNCVVLTHIPTD 63 (64)
Q Consensus 41 sGpGGQ~vNk~~s~V~l~h~ptg 63 (64)
+|+|+...+.....|.|..+|..
T Consensus 4 g~~~~~~~~~~~~~l~V~nLp~~ 26 (102)
T 1wez_A 4 GSSGSSFQSTTGHCVHMRGLPYR 26 (102)
T ss_dssp SSCCSSCCCSSSCEEEEESCCTT
T ss_pred CCCCCCCCCCCCCEEEEeCCCCC
Confidence 34445556677788999888864
No 20
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=22.66 E-value=42 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=14.6
Q ss_pred CCccCCCCeEEEEEeecCCCccc
Q psy2490 25 VPKIDEKDIQERFVRGSGPGGQA 47 (64)
Q Consensus 25 ~~~i~~~dl~~~~~rssGpGGQ~ 47 (64)
+++++...++++ ++||.||.|
T Consensus 96 dldlp~G~irlk--~gGs~gGHN 116 (191)
T 2z2i_A 96 DLDLEFGRIRLK--IGGGEGGHN 116 (191)
T ss_dssp ETTSCTTCEEEE--ESCCCTTCH
T ss_pred ccCCCCceEEEe--cCCCCCCcC
Confidence 345666777776 578888865
No 21
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=22.16 E-value=44 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=14.6
Q ss_pred CCccCCCCeEEEEEeecCCCccc
Q psy2490 25 VPKIDEKDIQERFVRGSGPGGQA 47 (64)
Q Consensus 25 ~~~i~~~dl~~~~~rssGpGGQ~ 47 (64)
+++++...++++. +||.||.|
T Consensus 94 dldlp~G~irlk~--gGs~gGHN 114 (193)
T 2pth_A 94 ELDLPPGVAKFKL--GGGHGGHN 114 (193)
T ss_dssp ETTSCTTCEEEEE--SCCCTTCH
T ss_pred ccCCCCceEEEec--CCCCCCCC
Confidence 4566677777765 78888864
No 22
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=21.87 E-value=44 Score=22.25 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=15.3
Q ss_pred CCccCCCCeEEEEEeecCCCccc
Q psy2490 25 VPKIDEKDIQERFVRGSGPGGQA 47 (64)
Q Consensus 25 ~~~i~~~dl~~~~~rssGpGGQ~ 47 (64)
+++++...++++. +||.||.|
T Consensus 102 dldLp~G~irlk~--gGs~gGHN 122 (199)
T 4fyj_A 102 ELDMPPGVAKLKT--GGGHGGHN 122 (199)
T ss_dssp ETTSCTTCEEEEE--SCCCTTCH
T ss_pred cCCCCCceEEEec--CCCCCCCC
Confidence 4566777777765 88889876
Done!