Your job contains 1 sequence.
>psy2490
MSIFRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHI
PTDS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2490
(64 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0050100 - symbol:CG30100 species:7227 "Drosophila ... 173 3.4e-13 1
UNIPROTKB|F5GWJ6 - symbol:C12orf65 "Probable peptide chai... 140 1.1e-09 1
UNIPROTKB|F5H4X5 - symbol:C12orf65 "Probable peptide chai... 140 1.1e-09 1
UNIPROTKB|Q9H3J6 - symbol:C12orf65 "Probable peptide chai... 140 1.1e-09 1
UNIPROTKB|E2QXR1 - symbol:C12orf65 "Uncharacterized prote... 139 2.1e-09 1
UNIPROTKB|F1RFL3 - symbol:C12orf65 "Uncharacterized prote... 133 5.9e-09 1
MGI|MGI:1919900 - symbol:2810006K23Rik "RIKEN cDNA 281000... 133 5.9e-09 1
UNIPROTKB|F1LWN5 - symbol:RGD1563482 "Protein RGD1563482"... 133 5.9e-09 1
UNIPROTKB|F1M2Z8 - symbol:RGD1563482 "Protein RGD1563482"... 133 5.9e-09 1
UNIPROTKB|F1MLX1 - symbol:C17H12orf65 "Uncharacterized pr... 132 7.6e-09 1
UNIPROTKB|F1NSN8 - symbol:F1NSN8 "Uncharacterized protein... 126 3.3e-08 1
CGD|CAL0005347 - symbol:orf19.5488 species:5476 "Candida ... 115 4.8e-07 1
TIGR_CMR|CJE_1628 - symbol:CJE_1628 "peptide chain releas... 111 8.2e-06 1
TIGR_CMR|APH_0420 - symbol:APH_0420 "peptide chain releas... 107 2.2e-05 1
UNIPROTKB|Q74FR0 - symbol:GSU0546 "Peptidyl-tRNA hydrolas... 99 2.4e-05 1
TIGR_CMR|GSU_0546 - symbol:GSU_0546 "peptidyl-tRNA hydrol... 99 2.4e-05 1
POMBASE|SPBC1105.18c - symbol:SPBC1105.18c "peptide relea... 99 2.4e-05 1
TIGR_CMR|ECH_0597 - symbol:ECH_0597 "peptide chain releas... 103 5.9e-05 1
DICTYBASE|DDB_G0288835 - symbol:prfB "class I peptide cha... 104 6.0e-05 1
TIGR_CMR|NSE_0406 - symbol:NSE_0406 "peptide chain releas... 99 0.00017 1
UNIPROTKB|O75570 - symbol:MTRF1 "Peptide chain release fa... 86 0.00022 2
UNIPROTKB|B4DG01 - symbol:MTRF1 "Peptide chain release fa... 86 0.00025 2
GENEDB_PFALCIPARUM|PFD0480w - symbol:PFD0480w "hypothetic... 91 0.00035 1
UNIPROTKB|Q8I1W0 - symbol:PFD0480w "Putative uncharacteri... 91 0.00035 1
TIGR_CMR|GSU_2278 - symbol:GSU_2278 "peptide chain releas... 96 0.00036 1
MGI|MGI:2384815 - symbol:Mtrf1 "mitochondrial translation... 81 0.00037 2
TIGR_CMR|APH_0479 - symbol:APH_0479 "peptide chain releas... 94 0.00060 1
UNIPROTKB|P66016 - symbol:prfA "Peptide chain release fac... 92 0.00091 1
UNIPROTKB|Q0BYR4 - symbol:HNE_2699 "Peptidyl-tRNA hydrola... 84 0.00093 1
TIGR_CMR|NSE_0604 - symbol:NSE_0604 "peptide chain releas... 92 0.00095 1
>FB|FBgn0050100 [details] [associations]
symbol:CG30100 species:7227 "Drosophila melanogaster"
[GO:0003747 "translation release factor activity" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720 EMBL:AE013599
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 EMBL:BT030757 RefSeq:NP_725560.1
UniGene:Dm.38081 SMR:A1ZAD7 STRING:A1ZAD7
EnsemblMetazoa:FBtr0087140 GeneID:246457 KEGG:dme:Dmel_CG30100
UCSC:CG30100-RA FlyBase:FBgn0050100 eggNOG:NOG295143
InParanoid:A1ZAD7 OMA:CHTHRLA OrthoDB:EOG4JH9Z9 NextBio:842552
Uniprot:A1ZAD7
Length = 146
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 6 RHLSLASSLFR-KYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTD 63
R L+L + R K +LDYS+ P + E DI+E F+RGSGPGGQAV KT+NCV L H+PT+
Sbjct: 7 RFLALPPTAVRCKSNLDYSRFPVLQESDIEETFMRGSGPGGQAVNKTSNCVFLRHLPTN 65
>UNIPROTKB|F5GWJ6 [details] [associations]
symbol:C12orf65 "Probable peptide chain release factor
C12orf65, mitochondrial" species:9606 "Homo sapiens" [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 HGNC:HGNC:26784
EMBL:AC073857 EMBL:AC068768 IPI:IPI01018612 Ensembl:ENST00000546132
ArrayExpress:F5GWJ6 Bgee:F5GWJ6 Uniprot:F5GWJ6
Length = 96
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + +DE +++E+FV+G GPGGQA KT+NCVVL HIP+
Sbjct: 48 DYPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPS 89
>UNIPROTKB|F5H4X5 [details] [associations]
symbol:C12orf65 "Probable peptide chain release factor
C12orf65, mitochondrial" species:9606 "Homo sapiens" [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 HGNC:HGNC:26784
EMBL:AC073857 EMBL:AC068768 IPI:IPI01014644 Ensembl:ENST00000543139
ArrayExpress:F5H4X5 Bgee:F5H4X5 Uniprot:F5H4X5
Length = 138
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + +DE +++E+FV+G GPGGQA KT+NCVVL HIP+
Sbjct: 48 DYPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPS 89
>UNIPROTKB|Q9H3J6 [details] [associations]
symbol:C12orf65 "Probable peptide chain release factor
C12orf65, mitochondrial" species:9606 "Homo sapiens" [GO:0003747
"translation release factor activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=NAS] InterPro:IPR000352 Pfam:PF00472
PROSITE:PS00745 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
EMBL:CH471054 eggNOG:COG1186 GO:GO:0003747 EMBL:AF061733
EMBL:AK095982 EMBL:BC018145 EMBL:BC020885 EMBL:BC062329
IPI:IPI00019211 IPI:IPI00382906 RefSeq:NP_001137377.1
RefSeq:NP_001181924.1 RefSeq:NP_689482.1 UniGene:Hs.319128
ProteinModelPortal:Q9H3J6 SMR:Q9H3J6 IntAct:Q9H3J6 STRING:Q9H3J6
PhosphoSite:Q9H3J6 DMDM:74733574 PRIDE:Q9H3J6 DNASU:91574
Ensembl:ENST00000253233 Ensembl:ENST00000366329
Ensembl:ENST00000429587 GeneID:91574 KEGG:hsa:91574 UCSC:uc001uen.3
CTD:91574 GeneCards:GC12P123717 HGNC:HGNC:26784 HPA:HPA038194
MIM:613541 MIM:613559 neXtProt:NX_Q9H3J6 Orphanet:254930
Orphanet:70474 PharmGKB:PA162377963 HOGENOM:HOG000217812
HOVERGEN:HBG094928 InParanoid:Q9H3J6 OMA:WESSKNV OrthoDB:EOG4T784Q
PhylomeDB:Q9H3J6 GenomeRNAi:91574 NextBio:77303 ArrayExpress:Q9H3J6
Bgee:Q9H3J6 CleanEx:HS_C12orf65 Genevestigator:Q9H3J6
Uniprot:Q9H3J6
Length = 166
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + +DE +++E+FV+G GPGGQA KT+NCVVL HIP+
Sbjct: 48 DYPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPS 89
>UNIPROTKB|E2QXR1 [details] [associations]
symbol:C12orf65 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 OMA:ELMSSEA EMBL:AAEX03014643
Ensembl:ENSCAFT00000012030 Uniprot:E2QXR1
Length = 239
Score = 139 (54.0 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
D +P +DE +++E+FV+G GPGGQA KT+NCVVL HIP+
Sbjct: 121 DRPALPLLDESELEEQFVKGHGPGGQATNKTSNCVVLKHIPS 162
>UNIPROTKB|F1RFL3 [details] [associations]
symbol:C12orf65 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:CU462966
Ensembl:ENSSSCT00000010716 Uniprot:F1RFL3
Length = 187
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 22/35 (62%), Positives = 31/35 (88%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+DE++++E+FV+G GPGGQA KT+NCVVL HIP+
Sbjct: 58 LDERELEEQFVKGHGPGGQATNKTSNCVVLRHIPS 92
>MGI|MGI:1919900 [details] [associations]
symbol:2810006K23Rik "RIKEN cDNA 2810006K23 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006415 "translational termination" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 InterPro:IPR014720 MGI:MGI:1919900
GO:GO:0005739 Gene3D:3.30.160.20 eggNOG:COG1186 GO:GO:0003747
HOGENOM:HOG000217812 HOVERGEN:HBG094928 OrthoDB:EOG4T784Q
EMBL:AK012682 EMBL:AK039255 EMBL:AK140664 EMBL:BC046909
IPI:IPI00465979 IPI:IPI00856726 RefSeq:NP_001128189.1
RefSeq:NP_082586.1 UniGene:Mm.121658 PDB:2RSM PDBsum:2RSM
ProteinModelPortal:Q80VP5 SMR:Q80VP5 STRING:Q80VP5 PaxDb:Q80VP5
PRIDE:Q80VP5 Ensembl:ENSMUST00000077376 Ensembl:ENSMUST00000111477
GeneID:72650 KEGG:mmu:72650 UCSC:uc008zpm.1 UCSC:uc008zpn.1
GeneTree:ENSGT00390000012759 InParanoid:Q80VP5 OMA:ELMSSEA
NextBio:336653 Bgee:Q80VP5 CleanEx:MM_2810006K23RIK
Genevestigator:Q80VP5 Uniprot:Q80VP5
Length = 184
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + ++E +++E+FV+G GPGGQA KT+NCVVL H+P+
Sbjct: 51 DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPS 92
>UNIPROTKB|F1LWN5 [details] [associations]
symbol:RGD1563482 "Protein RGD1563482" species:10116
"Rattus norvegicus" [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
IPI:IPI00388532 Ensembl:ENSRNOT00000030251 RGD:1563482
ArrayExpress:F1LWN5 Uniprot:F1LWN5
Length = 127
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + ++E +++E+FV+G GPGGQA KT+NCVVL H+P+
Sbjct: 50 DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPS 91
>UNIPROTKB|F1M2Z8 [details] [associations]
symbol:RGD1563482 "Protein RGD1563482" species:10116
"Rattus norvegicus" [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 RGD:1563482 IPI:IPI00370893
Ensembl:ENSRNOT00000001421 ArrayExpress:F1M2Z8 Uniprot:F1M2Z8
Length = 183
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
DY + ++E +++E+FV+G GPGGQA KT+NCVVL H+P+
Sbjct: 50 DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPS 91
>UNIPROTKB|F1MLX1 [details] [associations]
symbol:C17H12orf65 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:DAAA02045238 IPI:IPI00704175
Ensembl:ENSBTAT00000027321 Uniprot:F1MLX1
Length = 173
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 21/35 (60%), Positives = 31/35 (88%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+DE++++E+FV+G GPGGQA KT+NCVVL H+P+
Sbjct: 56 LDERELEEQFVKGHGPGGQATNKTSNCVVLRHVPS 90
>UNIPROTKB|F1NSN8 [details] [associations]
symbol:F1NSN8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:AADN02034888 EMBL:AADN02034889
EMBL:AADN02034890 EMBL:AADN02034891 EMBL:AADN02034892
IPI:IPI00587441 Ensembl:ENSGALT00000005399 Uniprot:F1NSN8
Length = 141
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
++ E +++E+FVRG GPGGQA KT+NCVVL H+P+
Sbjct: 31 ELTEAELKEQFVRGDGPGGQATNKTSNCVVLKHVPS 66
>CGD|CAL0005347 [details] [associations]
symbol:orf19.5488 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 CGD:CAL0005347 Gene3D:3.30.160.20 GO:GO:0005622
eggNOG:COG1186 GO:GO:0003747 HOGENOM:HOG000217812 EMBL:AACQ01000196
EMBL:AACQ01000195 RefSeq:XP_711480.1 RefSeq:XP_711504.1
ProteinModelPortal:Q59P48 STRING:Q59P48 GeneID:3646889
GeneID:3646913 KEGG:cal:CaO19.12943 KEGG:cal:CaO19.5488
Uniprot:Q59P48
Length = 171
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 8 LSLASSLFRKYDLDY-----SKVPK-----IDEKDIQERFVRGS-GPGGQAVAKTNNCVV 56
++L SLF L Y +K+P I E+DI+E+F+ G GPGGQ + KTN+ V
Sbjct: 5 INLFRSLFTSNSLKYGIPKKNKLPPRPKHLIKEEDIEEKFLHGGRGPGGQKINKTNSKVQ 64
Query: 57 LTHIPT 62
LTHIPT
Sbjct: 65 LTHIPT 70
>TIGR_CMR|CJE_1628 [details] [associations]
symbol:CJE_1628 "peptide chain release factor 2"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG1186
GO:GO:0016149 RefSeq:YP_179609.1 ProteinModelPortal:Q5HSX6
STRING:Q5HSX6 GeneID:3232256 KEGG:cjr:CJE1628 PATRIC:20045053
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
BioCyc:CJEJ195099:GJC0-1658-MONOMER PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 Uniprot:Q5HSX6
Length = 365
Score = 111 (44.1 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S SS+ +LD +I+EKDI+ + R SG GGQ V KT + V +TH PT
Sbjct: 211 RRHTSF-SSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPT 267
>TIGR_CMR|APH_0420 [details] [associations]
symbol:APH_0420 "peptide chain release factor 1"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 RefSeq:YP_505023.1
ProteinModelPortal:Q2GKS8 STRING:Q2GKS8 GeneID:3929978
KEGG:aph:APH_0420 PATRIC:20949454 OMA:EMPEINP ProtClustDB:PRK00591
BioCyc:APHA212042:GHPM-447-MONOMER TIGRFAMs:TIGR00019
Uniprot:Q2GKS8
Length = 359
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIPT
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 251
>UNIPROTKB|Q74FR0 [details] [associations]
symbol:GSU0546 "Peptidyl-tRNA hydrolase-related protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_951604.1 ProteinModelPortal:Q74FR0 GeneID:2685772
KEGG:gsu:GSU0546 PATRIC:22023849 OMA:TATCVQI ProtClustDB:CLSK827916
BioCyc:GSUL243231:GH27-530-MONOMER Uniprot:Q74FR0
Length = 126
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+ E D++E FVR SG GGQ V KT CV + H PT
Sbjct: 25 VSEADLEETFVRSSGAGGQHVNKTATCVQIRHRPT 59
>TIGR_CMR|GSU_0546 [details] [associations]
symbol:GSU_0546 "peptidyl-tRNA hydrolase domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_951604.1 ProteinModelPortal:Q74FR0 GeneID:2685772
KEGG:gsu:GSU0546 PATRIC:22023849 OMA:TATCVQI ProtClustDB:CLSK827916
BioCyc:GSUL243231:GH27-530-MONOMER Uniprot:Q74FR0
Length = 126
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+ E D++E FVR SG GGQ V KT CV + H PT
Sbjct: 25 VSEADLEETFVRSSGAGGQHVNKTATCVQIRHRPT 59
>POMBASE|SPBC1105.18c [details] [associations]
symbol:SPBC1105.18c "peptide release factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003747
"translation release factor activity" evidence=IEA] [GO:0004045
"aminoacyl-tRNA hydrolase activity" evidence=ISM] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006415 "translational
termination" evidence=IC] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
PomBase:SPBC1105.18c GO:GO:0005739 EMBL:CU329671 Gene3D:3.30.160.20
GO:GO:0032543 eggNOG:COG1186 GO:GO:0004045 GO:GO:0003747
GO:GO:0006415 OrthoDB:EOG4WHCWF RefSeq:NP_596474.2
ProteinModelPortal:Q9Y811 STRING:Q9Y811 EnsemblFungi:SPBC1105.18c.1
GeneID:2539814 KEGG:spo:SPBC1105.18c NextBio:20800963
Uniprot:Q9Y811
Length = 162
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 17 KYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
K + Y ++ ++ E+DI+E F+ G GPGGQ + KT+ + HIPT
Sbjct: 37 KKETPY-QLERLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPT 81
>TIGR_CMR|ECH_0597 [details] [associations]
symbol:ECH_0597 "peptide chain release factor 1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:YP_507408.1
ProteinModelPortal:Q2GGM5 SMR:Q2GGM5 STRING:Q2GGM5 GeneID:3927422
KEGG:ech:ECH_0597 PATRIC:20576648
BioCyc:ECHA205920:GJNR-599-MONOMER Uniprot:Q2GGM5
Length = 359
Score = 103 (41.3 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KIDEKD++ R SGPGGQ+V T++ V +THIP+
Sbjct: 216 KIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPS 251
>DICTYBASE|DDB_G0288835 [details] [associations]
symbol:prfB "class I peptide chain release factor"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 dictyBase:DDB_G0288835
GO:GO:0005737 Gene3D:3.30.160.20 GenomeReviews:CM000154_GR
eggNOG:COG1186 EMBL:AAFI02000125 GO:GO:0016149
PANTHER:PTHR11075:SF6 RefSeq:XP_636549.1 ProteinModelPortal:Q54IC8
STRING:Q54IC8 EnsemblProtists:DDB0237485 GeneID:8626834
KEGG:ddi:DDB_G0288835 InParanoid:Q54IC8 OMA:LINESHN Uniprot:Q54IC8
Length = 424
Score = 104 (41.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+RH S AS + D K+ ID KD+ +R SG GGQ V KT + V + HIPT
Sbjct: 268 KRHTSFASVVVYPISDDSIKI-NIDPKDLHFETLRSSGAGGQHVNKTESAVRIVHIPT 324
>TIGR_CMR|NSE_0406 [details] [associations]
symbol:NSE_0406 "peptide chain release factor 1"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_506293.1 ProteinModelPortal:Q2GE03 SMR:Q2GE03
STRING:Q2GE03 GeneID:3931950 KEGG:nse:NSE_0406 PATRIC:22680869
ProtClustDB:CLSK2527657 BioCyc:NSEN222891:GHFU-429-MONOMER
Uniprot:Q2GE03
Length = 367
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
KI++KD++ R SGPGGQ+V T++ V +THIPT
Sbjct: 217 KINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 252
>UNIPROTKB|O75570 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=TAS] [GO:0006449 "regulation of
translational termination" evidence=TAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0006449 GO:GO:0016149 EMBL:AL354696
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
CTD:9617 OrthoDB:EOG48KRBQ EMBL:AF072934 EMBL:BC042196
IPI:IPI00026157 RefSeq:NP_004285.2 UniGene:Hs.382176
ProteinModelPortal:O75570 SMR:O75570 IntAct:O75570 STRING:O75570
PhosphoSite:O75570 PRIDE:O75570 Ensembl:ENST00000379477
Ensembl:ENST00000379480 Ensembl:ENST00000452359 GeneID:9617
KEGG:hsa:9617 UCSC:uc001uxx.3 GeneCards:GC13M041790 HGNC:HGNC:7469
HPA:HPA043316 MIM:604601 neXtProt:NX_O75570 PharmGKB:PA31273
InParanoid:O75570 PhylomeDB:O75570 GenomeRNAi:9617 NextBio:36079
ArrayExpress:O75570 Bgee:O75570 CleanEx:HS_MTRF1
Genevestigator:O75570 GermOnline:ENSG00000120662 Uniprot:O75570
Length = 445
Score = 86 (35.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
K+D KD++ R G GGQ V KT++ V L HIPT
Sbjct: 294 KLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPT 329
Score = 33 (16.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 7 HLSLASSLFRKYDLD 21
H+ L S FR+ LD
Sbjct: 22 HIQLHSHQFRQIHLD 36
Score = 28 (14.9 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 2 SIFRRHLSLA 11
S+ RRH LA
Sbjct: 105 SLNRRHAELA 114
>UNIPROTKB|B4DG01 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
EMBL:AL354696 HOGENOM:HOG000074815 HOVERGEN:HBG017071 OMA:VWLFRHP
UniGene:Hs.382176 HGNC:HGNC:7469 EMBL:AK294343 IPI:IPI00909024
SMR:B4DG01 STRING:B4DG01 Ensembl:ENST00000430347 UCSC:uc010tff.2
Uniprot:B4DG01
Length = 468
Score = 86 (35.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
K+D KD++ R G GGQ V KT++ V L HIPT
Sbjct: 307 KLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPT 342
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 7 HLSLASSLFRKYDLD 21
H+ L S FR+ LD
Sbjct: 35 HIQLHSHQFRQIHLD 49
Score = 28 (14.9 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 2 SIFRRHLSLA 11
S+ RRH LA
Sbjct: 118 SLNRRHAELA 127
>GENEDB_PFALCIPARUM|PFD0480w [details] [associations]
symbol:PFD0480w "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 EMBL:AL844503
GO:GO:0003747 RefSeq:XP_001351412.1 ProteinModelPortal:Q8I1W0
EnsemblProtists:PFD0480w:mRNA GeneID:812393 KEGG:pfa:PFD0480w
EuPathDB:PlasmoDB:PF3D7_0409700 HOGENOM:HOG000283979
ProtClustDB:CLSZ2432220 Uniprot:Q8I1W0
Length = 194
Score = 91 (37.1 bits), Expect = 0.00035, P = 0.00035
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 3 IFRRHLSLASSLFRKYDLDYSKVPKID--EKDIQERFVRGSGPGGQAVAKTNNCVVLTH 59
I R + L + +D+ K+ I ++E FV+G+G GGQ V KTNNCV++ +
Sbjct: 47 ILGRKVYLNTLSKNNFDVIQKKLEDIGVYPSHMEEMFVKGTGAGGQKVNKTNNCVIIKY 105
>UNIPROTKB|Q8I1W0 [details] [associations]
symbol:PFD0480w "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 EMBL:AL844503 GO:GO:0003747
RefSeq:XP_001351412.1 ProteinModelPortal:Q8I1W0
EnsemblProtists:PFD0480w:mRNA GeneID:812393 KEGG:pfa:PFD0480w
EuPathDB:PlasmoDB:PF3D7_0409700 HOGENOM:HOG000283979
ProtClustDB:CLSZ2432220 Uniprot:Q8I1W0
Length = 194
Score = 91 (37.1 bits), Expect = 0.00035, P = 0.00035
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 3 IFRRHLSLASSLFRKYDLDYSKVPKID--EKDIQERFVRGSGPGGQAVAKTNNCVVLTH 59
I R + L + +D+ K+ I ++E FV+G+G GGQ V KTNNCV++ +
Sbjct: 47 ILGRKVYLNTLSKNNFDVIQKKLEDIGVYPSHMEEMFVKGTGAGGQKVNKTNNCVIIKY 105
>TIGR_CMR|GSU_2278 [details] [associations]
symbol:GSU_2278 "peptide chain release factor 2,
programmed frameshift" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:NP_953327.1
ProteinModelPortal:Q74AS3 SMR:Q74AS3 GeneID:2686956
KEGG:gsu:GSU2278 PATRIC:22027411 ProtClustDB:CLSK828793
Uniprot:Q74AS3
Length = 372
Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
RRH S AS +F +++ KI E D++ R SG GGQ V T++ V LTH+PT
Sbjct: 210 RRHTSFAS-VFVFPEIEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLTHLPT 266
>MGI|MGI:2384815 [details] [associations]
symbol:Mtrf1 "mitochondrial translational release factor 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006415 "translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
MGI:MGI:2384815 GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP OrthoDB:EOG48KRBQ
EMBL:AK043981 EMBL:BC028898 IPI:IPI00169629 RefSeq:NP_666072.3
UniGene:Mm.35306 ProteinModelPortal:Q8K126 SMR:Q8K126 STRING:Q8K126
PhosphoSite:Q8K126 PRIDE:Q8K126 Ensembl:ENSMUST00000022600
GeneID:211253 KEGG:mmu:211253 UCSC:uc007usw.1 InParanoid:Q8K126
NextBio:373184 Bgee:Q8K126 CleanEx:MM_MTRF1 Genevestigator:Q8K126
GermOnline:ENSMUSG00000022022 Uniprot:Q8K126
Length = 446
Score = 81 (33.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
K+D KD++ R G GGQ V T++ V L HIPT
Sbjct: 295 KVDPKDLRVDTFRARGAGGQHVNTTDSAVRLVHIPT 330
Score = 36 (17.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 5 RRHLSLASSLFRKYDLD 21
+RH+ L+ FR+ LD
Sbjct: 20 QRHVFLSCQQFRQISLD 36
>TIGR_CMR|APH_0479 [details] [associations]
symbol:APH_0479 "peptide chain release factor 2,
programmed frameshift" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1186 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 RefSeq:YP_505078.1 ProteinModelPortal:Q2GKM3
STRING:Q2GKM3 GeneID:3930254 KEGG:aph:APH_0479 PATRIC:20949594
ProtClustDB:CLSK747346 Uniprot:Q2GKM3
Length = 376
Score = 94 (38.1 bits), Expect = 0.00060, P = 0.00060
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+RH S AS +D+ KI EKD++ R SG GGQ V KT + V +THIP+
Sbjct: 213 KRHTSFASVEVSPV-VDHEIDIKILEKDLRIDTYRASGAGGQHVNKTESAVRITHIPS 269
>UNIPROTKB|P66016 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842576 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 PIR:G70773 RefSeq:NP_215815.1 RefSeq:NP_335786.1
RefSeq:YP_006514676.1 ProteinModelPortal:P66016 SMR:P66016
PRIDE:P66016 EnsemblBacteria:EBMYCT00000003633
EnsemblBacteria:EBMYCT00000071350 GeneID:13319881 GeneID:886948
GeneID:924722 KEGG:mtc:MT1338 KEGG:mtu:Rv1299 KEGG:mtv:RVBD_1299
PATRIC:18124710 TubercuList:Rv1299 OMA:VEIHAND Uniprot:P66016
Length = 357
Score = 92 (37.4 bits), Expect = 0.00091, P = 0.00091
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
R H S A L + +V +IDE D++ R SG GGQ V T++ V +TH+PT
Sbjct: 196 RVHTSAAGVLVYPEPEEVGQV-QIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPT 252
>UNIPROTKB|Q0BYR4 [details] [associations]
symbol:HNE_2699 "Peptidyl-tRNA hydrolase domain protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000352 Pfam:PF00472
PROSITE:PS00745 GO:GO:0016787 eggNOG:COG1186 HOGENOM:HOG000244440
KO:K15034 OMA:VLIIKAQ GO:GO:0003747 EMBL:CP000158
GenomeReviews:CP000158_GR RefSeq:YP_761379.1
ProteinModelPortal:Q0BYR4 STRING:Q0BYR4 GeneID:4287049
KEGG:hne:HNE_2699 PATRIC:32218269
BioCyc:HNEP228405:GI69-2707-MONOMER Uniprot:Q0BYR4
Length = 144
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 19 DLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT-HIPTDS 64
DL S + ++ E FVR SGPGGQ V K ++ V LT H+ S
Sbjct: 6 DLRISDAITVPAWELSEAFVRASGPGGQNVNKVSSAVQLTWHVQASS 52
>TIGR_CMR|NSE_0604 [details] [associations]
symbol:NSE_0604 "peptide chain release factor 2,
programmed frameshift" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 eggNOG:COG1186 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 HOGENOM:HOG000074814
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020
RefSeq:YP_506484.1 ProteinModelPortal:Q2GDG2 STRING:Q2GDG2
GeneID:3931929 KEGG:nse:NSE_0604 PATRIC:22681243 OMA:SAVRITY
ProtClustDB:CLSK2527643 Uniprot:Q2GDG2
Length = 365
Score = 92 (37.4 bits), Expect = 0.00095, P = 0.00095
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
+RH S A +F ++ IDEKD++ R SG GGQ V KT + + +TH+P+
Sbjct: 211 KRHTSFAK-IFVSPCIEGEINISIDEKDLKIDTYRASGAGGQHVNKTESAIRITHLPS 267
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 64 64 0.00091 102 3 11 22 0.40 28
29 0.44 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 478 (51 KB)
Total size of DFA: 82 KB (2064 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.09u 0.09s 8.18t Elapsed: 00:00:06
Total cpu time: 8.09u 0.09s 8.18t Elapsed: 00:00:06
Start: Thu Aug 15 12:22:19 2013 End: Thu Aug 15 12:22:25 2013