RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2490
         (64 letters)



>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 112

 Score = 51.5 bits (123), Expect = 4e-11
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTDS 64
           I    +   + R SGPGGQ V K N+   +      +
Sbjct: 16 YIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASA 53


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 38.5 bits (89), Expect = 1e-05
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 18  YDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
            +L  +++P ++  D++    R SG GGQ V  T++ + +TH+PT
Sbjct: 197 PELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPT 241


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 37.3 bits (86), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 5   RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTD 63
           RRH S +S+ F   ++D     +I+  D++    R SG GGQ V +T + V +THIPT 
Sbjct: 209 RRHTSFSSA-FVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTG 266


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 36.6 bits (84), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 28  IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 62
           I  +D++    R SG GGQ V KT + V +TH+PT
Sbjct: 193 IRPEDLKIETFRASGHGGQYVNKTESAVRITHLPT 227


>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
          {Acanthamoeba castellanii [TaxId: 5755]}
          Length = 125

 Score = 23.2 bits (50), Expect = 2.1
 Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 33 IQERFVRG-SGPGGQAVAKTNNCVVLTH 59
            +R + G  G  G    KT+  +++  
Sbjct: 72 ADDRSIYGKKGSSGVITVKTSKAILVGV 99


>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 125

 Score = 23.2 bits (50), Expect = 2.5
 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 35 ERFVRG-SGPGGQAVAKTNNCVVLTH 59
          +R + G     G    +T   V++ H
Sbjct: 74 DRSIYGRHDAEGVVCVRTKQTVIIAH 99


>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon
          Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 202

 Score = 23.1 bits (49), Expect = 3.0
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 19 DLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTH 59
          ++      K      Q + ++G GP G   A ++ C    H
Sbjct: 57 EIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVC---VH 94


>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein) {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 130

 Score = 22.9 bits (49), Expect = 3.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 42  GPGGQAVAKTNNCVVLTH 59
           GPGG  + KTN  +V   
Sbjct: 87  GPGGVTIKKTNQALVFGF 104


>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human
           (Homo sapiens), isoform II [TaxId: 9606]}
          Length = 138

 Score = 22.6 bits (48), Expect = 4.2
 Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 2/45 (4%)

Query: 17  KYDLDYSKVPKIDEKDIQER--FVRGSGPGGQAVAKTNNCVVLTH 59
           K  +    +    +  +  R     G      AV +    +V+  
Sbjct: 69  KCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVM 113


>d1wbaa_ b.42.4.1 (A:) Winged bean albumin 1 {Goa bean (Psophocarpus
           tetragonolobus) [TaxId: 3891]}
          Length = 171

 Score = 22.2 bits (47), Expect = 5.4
 Identities = 3/26 (11%), Positives = 9/26 (34%)

Query: 23  SKVPKIDEKDIQERFVRGSGPGGQAV 48
             V  + +     + ++ +G     V
Sbjct: 88  GDVWSVVDFQPDGQQLKLAGRYPNQV 113


>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase)
          {Plasmodium falciparum [TaxId: 5833]}
          Length = 228

 Score = 21.8 bits (46), Expect = 7.6
 Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 10/35 (28%)

Query: 15 FRKYDLDYSKVPK----------IDEKDIQERFVR 39
             YDLD   +P           +    I+ R  +
Sbjct: 21 DDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEK 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 231,696
Number of extensions: 8120
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 11
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)