Query psy2491
Match_columns 162
No_of_seqs 120 out of 1026
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:35:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01663 C4-dicarboxylate tran 100.0 1.2E-31 2.7E-36 236.8 14.0 135 21-162 132-269 (428)
2 COG1301 GltP Na+/H+-dicarboxyl 100.0 1.9E-31 4E-36 234.6 14.5 151 6-162 99-265 (415)
3 PRK13027 C4-dicarboxylate tran 100.0 1.9E-31 4.1E-36 235.2 13.9 135 21-162 132-269 (421)
4 PRK11283 gltP glutamate/aspart 100.0 4.6E-31 9.9E-36 233.7 14.4 134 22-162 143-280 (437)
5 KOG3787|consensus 100.0 1.4E-30 3E-35 228.6 10.9 123 36-162 190-315 (507)
6 PF00375 SDF: Sodium:dicarboxy 100.0 6.8E-30 1.5E-34 222.4 10.7 136 21-162 120-258 (390)
7 PRK14695 serine/threonine tran 100.0 5.7E-29 1.2E-33 212.8 13.9 131 23-162 42-179 (319)
8 PRK13628 serine/threonine tran 100.0 7.7E-29 1.7E-33 217.6 13.4 130 24-162 132-265 (402)
9 COG1823 Predicted Na+/dicarbox 99.9 3.3E-22 7.2E-27 172.9 11.8 134 21-162 166-309 (458)
10 COG3633 SstT Na+/serine sympor 99.8 3.4E-19 7.3E-24 150.9 6.1 132 21-162 130-265 (407)
11 PF09546 Spore_III_AE: Stage I 43.1 2.2E+02 0.0048 24.7 12.0 30 59-88 87-116 (328)
12 PF03176 MMPL: MMPL family; I 37.2 1.8E+02 0.0039 24.3 7.3 36 106-141 271-306 (333)
13 TIGR00771 DcuC c4-dicarboxylat 36.9 3E+02 0.0064 24.3 9.4 115 37-157 258-387 (388)
14 PF00873 ACR_tran: AcrB/AcrD/A 35.0 2E+02 0.0043 28.5 8.2 92 37-141 383-493 (1021)
15 TIGR02829 spore_III_AE stage I 32.9 3.6E+02 0.0078 24.1 10.7 30 59-88 143-172 (381)
16 PRK10614 multidrug efflux syst 22.9 5.7E+02 0.012 25.6 9.0 34 106-139 458-491 (1025)
17 PRK09579 multidrug efflux prot 22.4 6.5E+02 0.014 25.2 9.3 33 106-138 457-489 (1017)
18 PF13817 DDE_Tnp_IS66_C: IS66 21.5 87 0.0019 18.7 2.0 18 137-154 8-25 (39)
19 TIGR00921 2A067 The (Largely A 21.1 2.8E+02 0.0062 25.8 6.3 29 106-134 689-717 (719)
No 1
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.97 E-value=1.2e-31 Score=236.81 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=128.8
Q ss_pred hccccccCChHhhhhccchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHH
Q psy2491 21 LETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSK 97 (162)
Q Consensus 21 ~~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~ 97 (162)
...+++|+|++++++++|++|+++||+ +| |+.+.+|+++++.+++|+++++++|+++|+|+++| |+|+ ++|+.
T Consensus 132 ~i~~~iP~Nif~ala~gnvL~vIvFai~~GiAl~~~~e~~~~l~~~~~~~~~vi~kii~~im~laPiGVfa----liA~~ 207 (428)
T PRK01663 132 FLMDIIPTTVVGAFASGDILQVLLFAVLFGFALARLGEKGKPVFDFIESLSHVLFGIVNMIMKLAPIGAFG----AMAFT 207 (428)
T ss_pred HHHHHCCCchHHHHhcCChHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 445899999999999999999999999 99 99988899999999999999999999999999999 9999 99999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhhhHHHHHhhccCCC
Q psy2491 98 LISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSK 162 (162)
Q Consensus 98 ~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~k~~~~a~l~AfsT~SS 162 (162)
++++| .+.+.++++|++++|+++++|.++++|++++ ++|+||++|+|+++|++++||+|+||
T Consensus 208 v~~~g--~~~l~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~~~p~~f~k~~~~~~~~AfsT~SS 269 (428)
T PRK01663 208 IGKYG--VGSLVQLGQLIGCFYITCILFVFVVLGAIAR-LTGFSIFKFIRYIKEELLIVLGTSSS 269 (428)
T ss_pred HHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhecccH
Confidence 99998 5889999999999999999999999998875 48999999999999999999999998
No 2
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=99.97 E-value=1.9e-31 Score=234.58 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=139.8
Q ss_pred eeccCccCcccccc------------hhccccccCChHhhhhccchHHHHHHHH-Hh-hhccCCCchhH-HHHHHHHHHH
Q psy2491 6 VMWPMRDRNLAGIK------------LLETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHKQTD-LHRRYDSYYA 70 (162)
Q Consensus 6 ~~~~~~~~~~~~~~------------~~~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~~~~-l~~~~~~l~~ 70 (162)
++||+.+.|.++.+ ....+++|+|+++++++||++|+++||+ +| ++..++|++++ +.+++|++++
T Consensus 99 ~~~Pg~g~~~~~~~~~~~~~~~~~~~~~l~~iiP~ni~~a~a~g~vLqil~fail~G~al~~~~~~~~~~v~~~~~~~~~ 178 (415)
T COG1301 99 VLQPGAGINIDPATLDTGAESEVSILDFLLDIIPTNIFGALAEGNVLQILFFAILFGLALAALGEKGKPPVENLFESLSE 178 (415)
T ss_pred HcCCCCCCCcCccccCCcccccchHHHHHHhhcCCChHhHhcCCChHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHH
Confidence 68999887765321 1334899999999999999999999999 99 99999999876 7799999999
Q ss_pred HHHHHHHHHHhhcC-ccccCchhhHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhh
Q psy2491 71 SAQQVCRHLYRRIP-GLPSDCHPAHTSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNF 149 (162)
Q Consensus 71 ~~~kvv~~Im~~~P-gVf~~~~~lia~~~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~k~~ 149 (162)
+++|+++++|+++| |+|+ ++|..++++| + +.+.++++|++++|.++++|.+++||.+.+.++|.||+||+|++
T Consensus 179 ~~~~v~~~vm~laPigvf~----~~a~~v~~~G-~-~~L~~l~~~v~~~~~~~~l~~~vvl~~~~~~~~g~s~~~~~r~~ 252 (415)
T COG1301 179 AMFKVTNFVMRLAPIGVFG----LMAFTVAKYG-F-GSLLSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFLRYI 252 (415)
T ss_pred HHHHHHHHHHHHhhHHHHH----HHHHHHHHhc-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999 9999 9999999999 4 99999999999999999999999999999878899999999999
Q ss_pred hHHHHHhhccCCC
Q psy2491 150 FPAILTAFATSSK 162 (162)
Q Consensus 150 ~~a~l~AfsT~SS 162 (162)
+|++.+||+|+||
T Consensus 253 ~~~~~~Af~T~SS 265 (415)
T COG1301 253 SEALLLAFSTSSS 265 (415)
T ss_pred HHHHHHHHhcchh
Confidence 9999999999998
No 3
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=99.97 E-value=1.9e-31 Score=235.24 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=128.8
Q ss_pred hccccccCChHhhhhccchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHH
Q psy2491 21 LETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSK 97 (162)
Q Consensus 21 ~~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~ 97 (162)
...+++|+|++++++++|++|+++||+ +| |+..++||++++.+++|+++++++|+++|+|+++| |+|+ ++|+.
T Consensus 132 ~l~~~iP~Nif~ala~gn~L~vIvFAi~~GiAl~~~~e~~~~l~~~~~~~~~~~~kii~~im~laPigVfa----liA~~ 207 (421)
T PRK13027 132 FLLKLIPTTAVDAFAKGDILQVLLFSVLFGSALSLLGERAKRVNRLIDELSHVLFRIMGFIIKLAPLGVLG----AIAFT 207 (421)
T ss_pred HHHHHCccchHHHhhcCChHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 335899999999999999999999999 99 99988999999999999999999999999999999 9999 99999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhhhHHHHHhhccCCC
Q psy2491 98 LISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSK 162 (162)
Q Consensus 98 ~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~k~~~~a~l~AfsT~SS 162 (162)
++++| .+.+.++++|++++++++++|.+++++++.+ ++|.||++|+|+++|++++||+|+||
T Consensus 208 ~~~~g--~~~l~~l~~~l~~~~~~~~i~~~vv~~~i~~-~~~~~p~~~~k~~~~~~~~Af~T~SS 269 (421)
T PRK13027 208 TGKYG--VGSLKQLGMLVAVFYLTCFVFVVVVLGAVMR-LAGFSVFKLIRYLREELLIVLGTASS 269 (421)
T ss_pred HHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhhhcch
Confidence 99999 5999999999999999999999999998775 58999999999999999999999998
No 4
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=99.97 E-value=4.6e-31 Score=233.74 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=126.3
Q ss_pred ccccccCChHhhhhccchHHHHHHHH-Hh-hhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHH
Q psy2491 22 ETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHK-QTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSK 97 (162)
Q Consensus 22 ~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~-~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~ 97 (162)
..+++|+|++++++++|++|+++||+ +| |+..++|+ .+++.+++|+++++++|+++|+|+++| |+|+ ++|+.
T Consensus 143 i~~~iP~N~~~ala~gn~L~vIiFai~~GiAl~~~~~~~~~~l~~~~~~~~~~~~kii~~im~~aPiGVfa----liA~~ 218 (437)
T PRK11283 143 ILSLIPTNIFASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTVFRSVSETMFKVTHMVMRYAPVGVFA----LIAVT 218 (437)
T ss_pred HHHHcCCChHHHHhcCChHHHHHHHHHHHHHHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 34899999999999999999999999 99 99888655 688999999999999999999999999 9999 99999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhhhHHHHHhhccCCC
Q psy2491 98 LISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSK 162 (162)
Q Consensus 98 ~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~k~~~~a~l~AfsT~SS 162 (162)
++++| .+.+.++++|++++|+++++|.+++++++++ ++|+||++|+|+++|++++||+|+||
T Consensus 219 ~~~~g--~~~l~~l~~~l~~~~~~~~l~~~vv~~~i~~-~~~~np~~~~k~~~~~~~~AfsT~SS 280 (437)
T PRK11283 219 VANFG--FASLWPLAKLVLLVYFAILFFALVVLGIVAR-LCGLSIWILIRILKDELILAYSTASS 280 (437)
T ss_pred HHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHheccch
Confidence 99999 5899999999999999999999999997765 57999999999999999999999998
No 5
>KOG3787|consensus
Probab=99.97 E-value=1.4e-30 Score=228.59 Aligned_cols=123 Identities=33% Similarity=0.531 Sum_probs=120.9
Q ss_pred ccchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHHHHhhchhHHHHHHHH
Q psy2491 36 HMIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSKLISIEDMTVTMRQLS 112 (162)
Q Consensus 36 ~~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~~~~~g~~~~~l~~l~ 112 (162)
++|+|++++||+ || +++++|||++.++||++++++++||++.|+|||+| ||.+ ++|+++.+.+|+.....+|+
T Consensus 190 GmNvLGlVvF~~~fGivig~lG~~g~~lv~FF~~L~e~iMklV~~iMWy~PvGI~f----LIagkIlem~Dl~~~~~~Lg 265 (507)
T KOG3787|consen 190 GMNVLGLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVGILF----LIAGKILEMEDLGVTARQLG 265 (507)
T ss_pred CccchhHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHcchhHHH----HHHHhhhccccHHHHHHHHH
Confidence 579999999999 99 99999999999999999999999999999999999 9999 99999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhhhHHHHHhhccCCC
Q psy2491 113 KFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSK 162 (162)
Q Consensus 113 ~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~k~~~~a~l~AfsT~SS 162 (162)
+|++++++|+++|.++++|++|++++|+||++|++++..|++|||+|+||
T Consensus 266 ~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP~~f~~Gm~Qal~TA~gTsSS 315 (507)
T KOG3787|consen 266 MYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFIAGLLQALATAFGTASS 315 (507)
T ss_pred HHHHHHHHHHHHHHHHHhhheeEEEEccChHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999997
No 6
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=99.96 E-value=6.8e-30 Score=222.44 Aligned_cols=136 Identities=25% Similarity=0.390 Sum_probs=125.2
Q ss_pred hccccccCChHhhhhccchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHH
Q psy2491 21 LETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSK 97 (162)
Q Consensus 21 ~~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~ 97 (162)
...+++|+|++++++++|++|+++||+ +| ++.+.+||++++++++|++|++++|+++|+|+++| |+|+ ++++.
T Consensus 120 ~~~~~iP~Ni~~a~~~~~~L~ivvfai~~G~al~~~~~~~~~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~----l~a~~ 195 (390)
T PF00375_consen 120 FLRNLIPSNIFEAFANGNILGIVVFAILFGVALGRLGEKGKPLIDFFESLNEVIMKIINWIMKLAPIGVFG----LIANS 195 (390)
T ss_dssp HHHCTS-SSHHHHHHSS-HHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH----HHHHH
T ss_pred hhccccCCcHHHhhhhcccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 344899999999999999999999999 99 99999999999999999999999999999999999 9999 99999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhhhHHHHHhhccCCC
Q psy2491 98 LISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSK 162 (162)
Q Consensus 98 ~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~k~~~~a~l~AfsT~SS 162 (162)
++++| . +.+.++++|++++++++++|.++++|+++++.+|+||++++|+++|++++||+|+||
T Consensus 196 ~~~~~-~-~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~Af~T~SS 258 (390)
T PF00375_consen 196 IATQG-L-SILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLTAFSTSSS 258 (390)
T ss_dssp HHSSC-C-GHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHHHHHHT-T
T ss_pred HHhcC-h-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHHHhhccCC
Confidence 99988 4 888999999999999999999999999999889999999999999999999999998
No 7
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=99.96 E-value=5.7e-29 Score=212.77 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=121.7
Q ss_pred cccc---cCChHhhhhccchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHH
Q psy2491 23 TKRH---RKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTS 96 (162)
Q Consensus 23 t~iv---p~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~ 96 (162)
++++ |+|++++++++|+||+++||+ +| |+.. ++++..+++|+++++++|+++|+|+++| |+|+ ++|+
T Consensus 42 ~~iv~~~~~N~~~ala~gn~L~iIvFAil~Gial~~---~~~~~~~~~~~l~~v~~kiv~~Vm~~aPiGVfa----liA~ 114 (319)
T PRK14695 42 SNLLLKLVDSPVNALLTANYIGILSWAVIFGIAMRE---ASKNSKELLKTIADVTSKIVEWIINLAPFGILG----LVFK 114 (319)
T ss_pred HHHHHHccCCHHHHhHcCCcHHHHHHHHHHHHHHHH---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3555 999999999999999999999 99 9974 3577889999999999999999999999 9999 9999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH-hhhhHHHHHhhccCCC
Q psy2491 97 KLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYY-VNFFPAILTAFATSSK 162 (162)
Q Consensus 97 ~~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~-k~~~~a~l~AfsT~SS 162 (162)
.++++| .+.+.++++|++++|.++++|.++++|+++++.+|+||++|+ |+++|++++||+|+||
T Consensus 115 ~v~~~G--~~~l~~l~~~v~~~~~~~~i~~~vv~~~~~~~~~~~~p~~f~~~~~~~~~~~AfsT~SS 179 (319)
T PRK14695 115 TISDKG--VGSLANYGILLVLLVTTMLFVAPVVNPLIAFFFMRRNPYPLVWNCLRVSGVTAFFTRSS 179 (319)
T ss_pred HHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 999999 589999999999999999999999999998888999999996 5689999999999998
No 8
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=99.96 E-value=7.7e-29 Score=217.56 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=122.8
Q ss_pred ccccCChHhhhhccchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHHHHh
Q psy2491 24 KRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSKLIS 100 (162)
Q Consensus 24 ~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~~~~ 100 (162)
+.+|+|++++++++|++|+++||+ +| |+.+++|+ .++++|+++++++|+++|+|+++| |+|+ ++|+.+++
T Consensus 132 ~~i~~N~~~al~~gniL~vIvFai~~GiAl~~~~~~---~~~~~~~~~~~~~kii~~Im~laPiGVfa----liA~~v~~ 204 (402)
T PRK13628 132 LSLVDNPINALLNANYIGILAWAIGLGLALRHASDT---TKNVVNDLSEAVSQIVKWVIRFAPIGIFG----LVASTLAE 204 (402)
T ss_pred HHCcCCHHHHhHcCCHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 667899999999999999999999 99 99877544 569999999999999999999999 9999 99999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HhhhhHHHHHhhccCCC
Q psy2491 101 IEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKY-YVNFFPAILTAFATSSK 162 (162)
Q Consensus 101 ~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~-~k~~~~a~l~AfsT~SS 162 (162)
+| .+.+.++++|++++|+++++|.+++||++++..+|+||+++ +|+++|++++||+|+||
T Consensus 205 ~g--~~~l~~l~~~v~~~~~~~~i~~~vv~~~i~~~~~~~~p~~~~~k~~~~~~~~AfsT~SS 265 (402)
T PRK13628 205 TG--FSALAGYAQLLAVLVGCMLFVALVVNPLIVFWKIRRNPYPLVFTCLRESGVTAFFTRSS 265 (402)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHheehhH
Confidence 99 59999999999999999999999999999988899999998 89999999999999998
No 9
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=172.91 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=119.0
Q ss_pred hccccccCChHhhhhc---cchHHHHHHHH-Hh-hhccCC----CchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCc
Q psy2491 21 LETKRHRKHQICDLGH---MIQTGLAFFVS-LS-ISPNLG----HKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDC 90 (162)
Q Consensus 21 ~~t~ivp~Ni~~a~~~---~niL~ivvFai-~G-al~~l~----~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~ 90 (162)
..++.+|+|+|..+++ .++.++++|+. .| |..++. |+++++.+++|.+++.+|++++.|||++| ||++
T Consensus 166 ~ilslIP~NpF~dlTGa~~tSiIaVVIFa~~lGiAalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~VirLTPYgV~A-- 243 (458)
T COG1823 166 LILSLIPKNPFADLTGANPTSIIAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLA-- 243 (458)
T ss_pred HHHHhcCCCchhHhhcCCccceeehhHHHHHHHHHHHHhhhhchHhHhHHHHHHHHHHHHHHHHHHHHHHhccHHHHH--
Confidence 4558999999999984 57999999999 99 877764 34689999999999999999999999999 9999
Q ss_pred hhhHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhhhHHHHHhhccCCC
Q psy2491 91 HPAHTSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFATSSK 162 (162)
Q Consensus 91 ~~lia~~~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~~k~~~~a~l~AfsT~SS 162 (162)
+|+...++++ + +.+.+++.|+.+.|.++.+. |++..+++ .+.|.||.+|+|+.+|.+.+||++|||
T Consensus 244 --lMtkv~ats~-~-~~I~~Lg~FivAsY~Ai~~M-FvvH~iLL-~~~g~NPi~Y~Kkv~PvL~FAFtSRSS 309 (458)
T COG1823 244 --LMTKVVATSN-L-EDIIKLGSFIVASYIAIFIM-FVVHGILL-ALNGVNPIKYFKKVWPVLTFAFTSRSS 309 (458)
T ss_pred --HHHHHHhhcc-H-HHHHHHHhHHHHHHHHHHHH-HHHHHHHH-HHcCCCHHHHHHHHhHHHhhheecccc
Confidence 9999999997 6 77889999999999999886 55665454 458999999999999999999999998
No 10
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=99.77 E-value=3.4e-19 Score=150.90 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=119.1
Q ss_pred hccccccCChHhhhhccchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHH
Q psy2491 21 LETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSK 97 (162)
Q Consensus 21 ~~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~ 97 (162)
+..+++ +|+++|+.+.|.++++.+++ +| |++.-. +.-++.++.++|...+++.||++++| |+|+ +.+++
T Consensus 130 Ll~~~V-dNPinAl~~aNyiGiLaWaiglG~Alrh~s---~~tk~~~~d~~e~vs~iV~~iI~fAP~GIfg----LVasT 201 (407)
T COG3633 130 LLMSLV-DNPINALLNANYIGILAWAIGLGLALRHAS---DTTKNLVNDLSEAVSKIVKVVIRFAPIGIFG----LVAST 201 (407)
T ss_pred HHHHHh-cCHHHHHhcCCchhhhHHHHHHhHHHHhcc---HhHHHHHHHHHHHHHHHHheeeeccCchhhH----HHHHH
Confidence 344666 99999999999999999999 99 998544 44457889999999999999999999 9999 99999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HhhhhHHHHHhhccCCC
Q psy2491 98 LISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKY-YVNFFPAILTAFATSSK 162 (162)
Q Consensus 98 ~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~~~-~k~~~~a~l~AfsT~SS 162 (162)
+++.| .+.+..+.+++.+.+..+++..+++-|++.++..|+||++. +...++.-++||.||||
T Consensus 202 ~a~tG--~~aL~gYa~LL~vLvg~Mlfva~VVNpliv~~kiRrNPyPLV~~ClReSg~tAFFTRSS 265 (407)
T COG3633 202 LAETG--FGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRNPYPLVLTCLRESGVTAFFTRSS 265 (407)
T ss_pred HHhhh--HHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEecCCCcchhHHHhhhcCeEEEEeccc
Confidence 99999 58899999999998888888888999999998899999985 88999999999999998
No 11
>PF09546 Spore_III_AE: Stage III sporulation protein AE (spore_III_AE); InterPro: IPR014194 This entry represents the stage III sporulation protein AE, which is encoded in a spore formation operon spoIIIAABCDEFGH under the control of sigma G []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=43.14 E-value=2.2e+02 Score=24.67 Aligned_cols=30 Identities=7% Similarity=0.046 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q psy2491 59 TDLHRRYDSYYASAQQVCRHLYRRIPGLPS 88 (162)
Q Consensus 59 ~~l~~~~~~l~~~~~kvv~~Im~~~PgVf~ 88 (162)
+++....+..+|.+..+++....+.|..+.
T Consensus 87 ~sF~~~~~~~~~~i~~~~~Fm~~l~Pv~~~ 116 (328)
T PF09546_consen 87 QSFTIAIDIARETIESMVDFMKALLPVYFT 116 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888899999999998889994444
No 12
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=37.20 E-value=1.8e+02 Score=24.33 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKN 141 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~n 141 (162)
..+.++|..+...++..++..+.++|.++.++.+.+
T Consensus 271 ~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 271 PPLRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 567888888777777777777888899998877775
No 13
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=36.93 E-value=3e+02 Score=24.30 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=58.5
Q ss_pred cchHHHHHHHH-Hh-hhccCCCchhHHHHHHHHHH--H-HHHHHHHHHHh-----h-cC-ccccCchhhHHHHHHhhchh
Q psy2491 37 MIQTGLAFFVS-LS-ISPNLGHKQTDLHRRYDSYY--A-SAQQVCRHLYR-----R-IP-GLPSDCHPAHTSKLISIEDM 104 (162)
Q Consensus 37 ~niL~ivvFai-~G-al~~l~~~~~~l~~~~~~l~--~-~~~kvv~~Im~-----~-~P-gVf~~~~~lia~~~~~~g~~ 104 (162)
.+++.+++.|- |+ .+...| -.+.+.+++.++. . .+.-++..++- . .+ +.+...-|++.....++| .
T Consensus 258 ~~v~~iI~aA~vF~~~L~~~G-i~~~l~~~l~~~~~~~~~~ll~~~l~~~~lg~~~~s~~a~~~~~~PIl~pia~~~G-i 335 (388)
T TIGR00771 258 ANVVGLIVAASVFAAGLKTIG-AVDAAISFAKESGLGNIFVMWGATIGPFLMALITGSGNAPFIAFNTAIPPHAVELG-Y 335 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-C
Confidence 45677777777 88 766543 1234455555551 2 22222222221 1 24 444445678878888888 3
Q ss_pred HHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHhCCChHHHHhhhhHHHHHhh
Q psy2491 105 TVTMRQLSKFVATS-IGGFLV--YHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAF 157 (162)
Q Consensus 105 ~~~l~~l~~~v~~~-~~~~li--~~~iv~~li~~~~~~~nP~~~~k~~~~a~l~Af 157 (162)
|.. .++..+... -.|... .....+ +..-.++.+|.+.+|...||++.|+
T Consensus 336 -dpv-~~gi~~~i~~~iG~~tpPv~~~l~--v~~gia~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 336 -THV-NLGMPMAIAGALGRTASPIAGVVV--VCAGLAMVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred -CHH-HHHHHHHHHHHHhCcCCcHHHHHH--HHHhhcCCCHHHHHHHHHHHHHHhc
Confidence 543 233222211 111110 001111 2223458899999999999998764
No 14
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=34.96 E-value=2e+02 Score=28.45 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=58.8
Q ss_pred cchHHHHHHHH-Hh-hhc-----------cCCC-chhHHHHHHHHHHHHHHHHH----HHHHhhcC-ccccCchhhHHHH
Q psy2491 37 MIQTGLAFFVS-LS-ISP-----------NLGH-KQTDLHRRYDSYYASAQQVC----RHLYRRIP-GLPSDCHPAHTSK 97 (162)
Q Consensus 37 ~niL~ivvFai-~G-al~-----------~l~~-~~~~l~~~~~~l~~~~~kvv----~~Im~~~P-gVf~~~~~lia~~ 97 (162)
-|++.+.-+++ +| -.- .+++ +..+.....++.+++..-++ ..+.-+.| ....
T Consensus 383 lN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~stlTti~vF~Pl~f~~--------- 453 (1021)
T PF00873_consen 383 LNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILASTLTTIAVFLPLLFMP--------- 453 (1021)
T ss_dssp BEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGGSB---------
T ss_pred chHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC---------
Confidence 46777776777 77 331 1122 23455566666666665444 35677899 7776
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy2491 98 LISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKN 141 (162)
Q Consensus 98 ~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~n 141 (162)
+..| +.+..++.-+...++..++..+.+.|.+...+.|.+
T Consensus 454 -G~~g---~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~ 493 (1021)
T PF00873_consen 454 -GIAG---QFFRPLALTVIIALIASLLVALTLVPALAALFLKPK 493 (1021)
T ss_dssp -HHHH---HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS---
T ss_pred -CchH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 4455 567888888888888888888899998877654433
No 15
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=32.86 E-value=3.6e+02 Score=24.09 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q psy2491 59 TDLHRRYDSYYASAQQVCRHLYRRIPGLPS 88 (162)
Q Consensus 59 ~~l~~~~~~l~~~~~kvv~~Im~~~PgVf~ 88 (162)
+++....+...|.+..+++....+.|..+.
T Consensus 143 ~sF~~~~~~a~~~I~~m~~FM~al~P~~~~ 172 (381)
T TIGR02829 143 KSFHVAMSYAKEAIESMVDFMLALLPLLLA 172 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888999999999999999995445
No 16
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=22.95 E-value=5.7e+02 Score=25.55 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTR 139 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~ 139 (162)
+.+.+++..+...++..++..+.+.|.++..+.+
T Consensus 458 ~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~ 491 (1025)
T PRK10614 458 RLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLK 491 (1025)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678888888888878888888999988766543
No 17
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.44 E-value=6.5e+02 Score=25.18 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFT 138 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~ 138 (162)
+.+..++..+...++..++..+.+.|.++..+.
T Consensus 457 ~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~ 489 (1017)
T PRK09579 457 ALFKEFALTLAGAVIISGIVALTLSPMMCALLL 489 (1017)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888887777777777778889998876654
No 18
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=21.50 E-value=87 Score=18.70 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.7
Q ss_pred HhCCChHHHHhhhhHHHH
Q psy2491 137 FTRKNPYKYYVNFFPAIL 154 (162)
Q Consensus 137 ~~~~nP~~~~k~~~~a~l 154 (162)
..++||++|++.+...+.
T Consensus 8 ~ngv~P~~yL~~vL~~i~ 25 (39)
T PF13817_consen 8 LNGVNPYAYLTDVLERIP 25 (39)
T ss_pred HcCCCHHHHHHHHHHHHc
Confidence 468999999999887653
No 19
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=21.09 E-value=2.8e+02 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIY 134 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~ 134 (162)
..+.++|..+....+..++..++++|.++
T Consensus 689 ~~~~~~g~~~~~~i~~~~~~~l~llPall 717 (719)
T TIGR00921 689 PIMRNFGLVQGIGVLSSLTAALVVFPALL 717 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887777777778888888665
Done!