Query psy2491
Match_columns 162
No_of_seqs 120 out of 1026
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:36:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 100.0 2.6E-32 9.1E-37 239.4 9.2 150 6-162 106-278 (422)
2 4dx5_A Acriflavine resistance 23.1 4.7E+02 0.016 24.5 11.8 59 68-139 439-498 (1057)
3 3arc_T Photosystem II reaction 20.8 43 0.0015 18.7 1.3 11 38-48 12-23 (32)
4 2l8s_A Integrin alpha-1; trans 13.9 2.5E+02 0.0084 17.3 4.0 23 111-133 9-31 (54)
5 3c9i_A Tail needle protein GP2 13.2 53 0.0018 26.1 0.6 42 10-54 10-58 (242)
6 2v50_A Multidrug resistance pr 13.1 1.6E+02 0.0054 27.8 4.0 35 106-140 996-1030(1052)
7 3aqp_A Probable secdf protein- 11.7 6.3E+02 0.021 22.9 7.4 38 106-143 692-729 (741)
8 2knc_A Integrin alpha-IIB; tra 9.5 3.5E+02 0.012 16.5 5.1 24 110-133 11-34 (54)
9 4dx5_A Acriflavine resistance 9.5 8E+02 0.028 22.8 7.5 34 106-139 998-1031(1057)
10 3ne5_A Cation efflux system pr 7.9 1.2E+03 0.042 21.6 8.1 34 106-139 1014-1047(1054)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=99.97 E-value=2.6e-32 Score=239.38 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=136.6
Q ss_pred eeccCccCccc------------ccchhccccccCChHhhhhccchHHHHHHHH-Hh-hhccCC--------CchhHHHH
Q psy2491 6 VMWPMRDRNLA------------GIKLLETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNLG--------HKQTDLHR 63 (162)
Q Consensus 6 ~~~~~~~~~~~------------~~~~~~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l~--------~~~~~l~~ 63 (162)
+++|+++.+++ +..+...+++|+|++++++++|++|+++||+ +| ++.+++ |+++++.+
T Consensus 106 ~~~pg~g~~~~~~~~~~~~~~~~~~~~~l~~~iP~N~~~a~a~~~~L~vivfai~~Gial~~~~~~~~~~~~~~~~~~~~ 185 (422)
T 2nwl_A 106 LFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLD 185 (422)
T ss_dssp HSCCCCSCCCCCCCCCC-----CCTHHHHGGGSCSCHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HhCCCccccccccccccccccCCcHHHHHHHHHhhChHHHHhhhchHHHHHHHHHHHHHHHHcccccccccchhhhHHHH
Confidence 46888665432 2223455899999999999999999999999 99 999887 66789999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-ccccCchhhHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q psy2491 64 RYDSYYASAQQVCRHLYRRIP-GLPSDCHPAHTSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNP 142 (162)
Q Consensus 64 ~~~~l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP 142 (162)
++|+++++++|+++|||+++| |+|+ ++|++++++| .+.+.++++|++++|+++++|.+++||++++ ++|+||
T Consensus 186 ~~~~~~~v~~kiv~~im~laPigvf~----lia~~~~~~g--~~~l~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~~np 258 (422)
T 2nwl_A 186 AINGLAEAMYKIVNGVMQYAPIGVFA----LIAYVMAEQG--VHVVGELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDP 258 (422)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHH----HHHHHHTTTG--GGCCTHHHHHHHHHHHHHHHHHHHTHHHHHH-HTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCH
Confidence 999999999999999999999 9999 9999999998 4888999999999999999999999999988 789999
Q ss_pred HHHHhhhhHHHHHhhccCCC
Q psy2491 143 YKYYVNFFPAILTAFATSSK 162 (162)
Q Consensus 143 ~~~~k~~~~a~l~AfsT~SS 162 (162)
++|+|+++|++++||+|+||
T Consensus 259 ~~~~k~~~~a~~~Af~T~SS 278 (422)
T 2nwl_A 259 ISFIKHAKDAMLTAFVTRSS 278 (422)
T ss_dssp HHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999997
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=23.11 E-value=4.7e+02 Score=24.48 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhhcC-ccccCchhhHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy2491 68 YYASAQQVCRHLYRRIP-GLPSDCHPAHTSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTR 139 (162)
Q Consensus 68 l~~~~~kvv~~Im~~~P-gVf~~~~~lia~~~~~~g~~~~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~ 139 (162)
...+++..+..+.-+.| .... +.. .+.+.+++..+...++..++..+.+.|.++..+.+
T Consensus 439 ~~pi~~t~ltt~~~f~pl~~~~----------g~~---~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~ 498 (1057)
T 4dx5_A 439 QGALVGIAMVLSAVFVPMAFFG----------GST---GAIYRQFSITIVSAMALSVLVALILTPALCATMLK 498 (1057)
T ss_dssp HHHHHHHHHHHHHHHSGGGGCC----------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcc----------CcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455556667777 6554 112 25567788777777777777788899988887754
No 3
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=20.81 E-value=43 Score=18.66 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=8.5
Q ss_pred chHHHHHHHH-H
Q psy2491 38 IQTGLAFFVS-L 48 (162)
Q Consensus 38 niL~ivvFai-~ 48 (162)
-.+++++||+ |
T Consensus 12 ~tlgiiFFAI~F 23 (32)
T 3arc_T 12 CIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhh
Confidence 4678889988 5
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=13.91 E-value=2.5e+02 Score=17.30 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2491 111 LSKFVATSIGGFLVYHLIVIQLI 133 (162)
Q Consensus 111 l~~~v~~~~~~~li~~~iv~~li 133 (162)
...+++.+++|+++..++++.+.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778777766666543
No 5
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=13.16 E-value=53 Score=26.07 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=26.9
Q ss_pred CccCcccccch-----hccccccCChHhhhhccchHHHHHHHH-Hh-hhccC
Q psy2491 10 MRDRNLAGIKL-----LETKRHRKHQICDLGHMIQTGLAFFVS-LS-ISPNL 54 (162)
Q Consensus 10 ~~~~~~~~~~~-----~~t~ivp~Ni~~a~~~~niL~ivvFai-~G-al~~l 54 (162)
|.+.||.-+.+ +++.|.|.|+|.- ...+-++-=+- .| ..++.
T Consensus 10 MAd~~ln~PV~vQatrld~sILPrNiFS~---sYllyVi~qgtDvG~VA~KA 58 (242)
T 3c9i_A 10 MADPSLNNPVVIQATRLDASILPRNVFSK---SYLLYVIAQGTDVGAIAGKA 58 (242)
T ss_dssp CCCGGGGSCCCCSCCCCCSSSSCTTTSCH---HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEeeccccccccchhhh---HHHHHHhcccchHHHHhhhh
Confidence 56777776643 7889999998753 34444444445 77 55554
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=13.07 E-value=1.6e+02 Score=27.77 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRK 140 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~ 140 (162)
+.+.+++..+..-++...+..+++.|.++.++.+.
T Consensus 996 ~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 996 GSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666665555555556678889887665543
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=11.71 E-value=6.3e+02 Score=22.86 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPY 143 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~~nP~ 143 (162)
+.+.+++..+..-++...+..+++.|.++..+.++.+.
T Consensus 692 ~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~~~ 729 (741)
T 3aqp_A 692 SVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRRKA 729 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 55677777666555555666778888887776654443
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.54 E-value=3.5e+02 Score=16.49 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2491 110 QLSKFVATSIGGFLVYHLIVIQLI 133 (162)
Q Consensus 110 ~l~~~v~~~~~~~li~~~iv~~li 133 (162)
++..+++.+++|+++..++++.+.
T Consensus 11 p~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888887766666543
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=9.47 E-value=8e+02 Score=22.85 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTR 139 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~ 139 (162)
+.+.+++..+..-++...+..+++.|.++.++.+
T Consensus 998 ~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~ 1031 (1057)
T 4dx5_A 998 GAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRR 1031 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566676666655555555567788888876654
No 10
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=7.94 E-value=1.2e+03 Score=21.58 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy2491 106 VTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTR 139 (162)
Q Consensus 106 ~~l~~l~~~v~~~~~~~li~~~iv~~li~~~~~~ 139 (162)
+.+.+++..+..-++...+..+++.|.++.++.+
T Consensus 1014 ~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~ 1047 (1054)
T 3ne5_A 1014 EVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWL 1047 (1054)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred HHhccCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666655555555555567788988877644
Done!