RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2491
         (162 letters)



>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 405

 Score = 31.6 bits (71), Expect = 0.030
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 90  CHPAHTSKLISIEDMTVTMRQLSKFVATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNF 149
              A  + +++ + + V         A  +G  L   ++++  +       +P  +  + 
Sbjct: 197 GVFALIAYVMAEQGVHVVGELAKVTAAVYVG--LTLQILLVYFVLLKIYGIDPISFIKHA 254

Query: 150 FPAILTAFATSS 161
             A+LTAF T S
Sbjct: 255 KDAMLTAFVTRS 266


>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 248

 Score = 24.1 bits (52), Expect = 9.4
 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 121 GFLVYHLIVIQLIYFLFTRKN--PYKYYVNFFPAI--LTAF 157
            F +  LI+     ++F  +    ++Y    +P +  +  F
Sbjct: 29  LFAITTLILSSAGLYIFANRKAYAWRY---VYPGMAGMGLF 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,499
Number of extensions: 24219
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 5
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.9 bits)