BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2492
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3J6|CL065_HUMAN Probable peptide chain release factor C12orf65, mitochondrial
OS=Homo sapiens GN=C12orf65 PE=2 SV=1
Length = 166
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 61/77 (79%)
Query: 47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
Y + +DE +++E+FV+G GPGGQA KT+NCVVL HIP+GIV+KCHQ+RS+ +NRK A
Sbjct: 49 YPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLA 108
Query: 107 RELLVAQWDVQVNGEDS 123
R++L + DV NGE+S
Sbjct: 109 RKILQEKVDVFYNGENS 125
>sp|A5WUX7|CL065_DANRE Probable peptide chain release factor C12orf65 homolog,
mitochondrial OS=Danio rerio GN=si:ch211-275j6.5 PE=3
SV=1
Length = 156
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 7/107 (6%)
Query: 50 IPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 109
+P + E++++E+FVRGSGPGGQA KT+NCVVL HIP+GIV+KCH++RS+ NRK ARE+
Sbjct: 39 LPVVHEEELEEQFVRGSGPGGQATNKTSNCVVLRHIPSGIVVKCHETRSVDLNRKRAREI 98
Query: 110 LVAQWDVQVNGEDS-----LNAQIRRIDEKRRATQE--QKKRKLDAL 149
L + +V GE+S +++ +KRR E +KKR+ +
Sbjct: 99 LREKLEVAYKGEESELLKMKKESMQKKQDKRRKVNENIEKKRRFKEM 145
>sp|Q80VP5|CL065_MOUSE Probable peptide chain release factor C12orf65 homolog,
mitochondrial OS=Mus musculus PE=1 SV=1
Length = 184
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 61/77 (79%)
Query: 47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 106
Y + ++E +++E+FV+G GPGGQA KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK A
Sbjct: 52 YPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIA 111
Query: 107 RELLVAQWDVQVNGEDS 123
R++L + DV NGE+S
Sbjct: 112 RKVLQEKVDVFYNGENS 128
>sp|Q9Y811|YONI_SCHPO Uncharacterized peptide chain release factor-like protein
C1105.18c, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1105.18c PE=3 SV=2
Length = 162
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 50 IPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 109
+ ++ E+DI+E F+ G GPGGQ + KT+ + HIPTGI+++ +RS +NR AR+
Sbjct: 44 LERLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPTGIIVRSQDTRSREQNRCIARKR 103
Query: 110 LVAQWDVQVNGEDSLNA-QIRRI 131
L + D +G DSL A +++RI
Sbjct: 104 LTEKVDEFKHGNDSLLARKVQRI 126
>sp|Q53915|RF2_STRCO Peptide chain release factor 2 OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=prfB PE=3 SV=2
Length = 368
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 25/123 (20%)
Query: 33 NDGYHRNLVSNIDIYSTIPK-----IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 87
N G + + ++I + + IDE +++ R SGPGGQ V T++ V LTHIPT
Sbjct: 208 NQGRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPT 267
Query: 88 GIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLD 147
GIV+ C RS +N+ TA +L A ++ E+RR ++++ K+D
Sbjct: 268 GIVVSCQNERSQIQNKATAMNVLQA-----------------KLLERRR---QEEQAKMD 307
Query: 148 ALK 150
ALK
Sbjct: 308 ALK 310
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5)
GN=prfB PE=3 SV=1
Length = 373
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 48 STIPKIDE--------KDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSL 99
S +P+IDE +D++ R SG GGQ V KT+ V +THIPTGI + C Q RS
Sbjct: 219 SVMPQIDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRITHIPTGITVSCQQERSQ 278
Query: 100 SENRKTARELLVAQ 113
+N++ A ELL A+
Sbjct: 279 YQNKRKALELLKAK 292
>sp|A1SHH9|RF1_NOCSJ Peptide chain release factor 1 OS=Nocardioides sp. (strain BAA-499
/ JS614) GN=prfA PE=3 SV=1
Length = 357
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA----- 106
+IDE D++ R SGPGGQ+V T++ V +TH+PTGIV+ C +S +NR+ A
Sbjct: 215 QIDENDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNREQAMRILR 274
Query: 107 -RELLVAQWDVQVNGEDSLNAQIRRIDEKRR 136
R L AQ ++ +Q+R +D R
Sbjct: 275 SRLLAAAQEKADAEAGEARRSQVRTVDRSER 305
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
+I+EKD++ + R SG GGQ V KT + V +THIPTGIV++C RS +N+ TA ++L
Sbjct: 232 EIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKATAMKML 290
>sp|Q9X183|RF1_THEMA Peptide chain release factor 1 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfA PE=1 SV=1
Length = 342
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 3 IKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLVSNIDIYSTIPKIDEKDIQER- 61
I+ V++ ++ +N GI ES V + + + ++ + +P+I+EKDI+ R
Sbjct: 136 IREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRP 195
Query: 62 ------FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
R SG GGQ V KT + V +TH+PTGIV+ C RS +N++TA +L A
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRA 252
>sp|A0LVP4|RF2_ACIC1 Peptide chain release factor 2 OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=prfB PE=3 SV=1
Length = 369
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 41 VSNIDIYSTIPKIDEKDIQER-----FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQ 95
+ +D+ + K D DI E R SGPGGQ V T++ V +TH+PTGIV+ C
Sbjct: 216 FAGVDVVPVVEKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAVRITHLPTGIVVTCQN 275
Query: 96 SRSLSENRKTARELLVA 112
RS +NR TA +L A
Sbjct: 276 ERSQLQNRATAMMVLQA 292
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
I++KDI+ R SG GGQ V KT++ + +THIPTGIV++C RS +NR TA ++L
Sbjct: 233 IEDKDIRVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAMKML 290
>sp|Q8NS78|RF2_CORGL Peptide chain release factor 2 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=prfB PE=3 SV=1
Length = 368
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 31 LRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVR-----GSGPGGQAVAKTNNCVVLTHI 85
N G + + +++ + K+D DI + VR SGPGGQ+V T++ V LTHI
Sbjct: 203 FDNQGRRQTSFAEVEVLPVVEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHI 262
Query: 86 PTGIVIKCHQSRSLSENRKTARELLVAQ 113
PTGIV+ C +S +N+ +A +L A+
Sbjct: 263 PTGIVVTCQNEKSQIQNKASAMRVLQAK 290
>sp|A4QCD3|RF2_CORGB Peptide chain release factor 2 OS=Corynebacterium glutamicum
(strain R) GN=prfB PE=3 SV=1
Length = 368
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 31 LRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVR-----GSGPGGQAVAKTNNCVVLTHI 85
N G + + +++ + K+D DI + VR SGPGGQ+V T++ V LTHI
Sbjct: 203 FDNQGRRQTSFAEVEVLPVVEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTHI 262
Query: 86 PTGIVIKCHQSRSLSENRKTARELLVAQ 113
PTGIV+ C +S +N+ +A +L A+
Sbjct: 263 PTGIVVTCQNEKSQIQNKASAMRVLQAK 290
>sp|Q82D82|RF2_STRAW Peptide chain release factor 2 OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=prfB PE=3 SV=1
Length = 368
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 25/123 (20%)
Query: 33 NDGYHRNLVSNIDIYSTIP-----KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 87
N G + + ++I + +IDE +++ R SGPGGQ V T++ V LTH+PT
Sbjct: 208 NQGRRQTSFAGVEILPVVETTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPT 267
Query: 88 GIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLD 147
GIV+ C RS +N+ +A +L Q + +D +R ++++ K+D
Sbjct: 268 GIVVSCQNERSQIQNKASAMNVL----------------QAKLLDRRR----QEEQAKMD 307
Query: 148 ALK 150
ALK
Sbjct: 308 ALK 310
>sp|B1KDU3|RF1_SHEWM Peptide chain release factor 1 OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=prfA PE=3 SV=1
Length = 361
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 15/96 (15%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+I++ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +
Sbjct: 218 EINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSV-- 275
Query: 112 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 146
L+A+I+ + DEKRR+ +E +R L
Sbjct: 276 ------------LSARIQAVEDEKRRSEEESTRRNL 299
>sp|B0TR27|RF1_SHEHH Peptide chain release factor 1 OS=Shewanella halifaxensis (strain
HAW-EB4) GN=prfA PE=3 SV=1
Length = 361
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 15/96 (15%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+I++ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 218 EINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA 277
Query: 112 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 146
A+I+ + DEKRR+ +E +R L
Sbjct: 278 --------------ARIQAVEDEKRRSAEESTRRNL 299
>sp|A8H7A5|RF1_SHEPA Peptide chain release factor 1 OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=prfA PE=3 SV=1
Length = 361
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 15/96 (15%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+I++ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 218 EINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA 277
Query: 112 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 146
A+I+ + DEKRR+ +E +R L
Sbjct: 278 --------------ARIQAVEDEKRRSAEESTRRNL 299
>sp|Q8NR57|RF1_CORGL Peptide chain release factor 1 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=prfA PE=3 SV=1
Length = 358
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+IDEKDI+ R SG GGQ V T++ V +TH+PTG+V+ C + RS +NR A ++L
Sbjct: 217 EIDEKDIRVDVYRSSGKGGQGVNTTDSAVRITHLPTGLVVTCQKERSQIQNRARAMQVLA 276
Query: 112 A 112
A
Sbjct: 277 A 277
>sp|A4QDG1|RF1_CORGB Peptide chain release factor 1 OS=Corynebacterium glutamicum
(strain R) GN=prfA PE=3 SV=1
Length = 358
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+IDEKDI+ R SG GGQ V T++ V +TH+PTG+V+ C + RS +NR A ++L
Sbjct: 217 EIDEKDIRVDVYRSSGKGGQGVNTTDSAVRITHLPTGLVVTCQKERSQIQNRARAMQVLA 276
Query: 112 A 112
A
Sbjct: 277 A 277
>sp|A4F8R2|RF2_SACEN Peptide chain release factor 2 OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=prfB PE=3 SV=1
Length = 367
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 25/125 (20%)
Query: 33 NDGYHRNLVSNIDIYSTIPKID-----EKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPT 87
N G + + +++ + + D EKDI+ R SGPGGQ+V T++ V +THIPT
Sbjct: 207 NQGRRQTSFAGVEVLPVVEETDHVEIPEKDIRVDVFRSSGPGGQSVNTTDSAVRITHIPT 266
Query: 88 GIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLD 147
GIV+ C +S +N+ A +L Q + + +K+ EQ++ +LD
Sbjct: 267 GIVVSCQNEKSQLQNKAAALRVL----------------QSKLLAKKK----EQERAELD 306
Query: 148 ALKKA 152
ALK +
Sbjct: 307 ALKDS 311
>sp|B1VV08|RF2_STRGG Peptide chain release factor 2 OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=prfB PE=3 SV=1
Length = 368
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+IDE +++ R SGPGGQ V T++ V LTH+PTGIV+ C RS +N+ +A +L
Sbjct: 232 EIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQNKASAMNVLQ 291
Query: 112 AQ 113
A+
Sbjct: 292 AK 293
>sp|A1RNE1|RF1_SHESW Peptide chain release factor 1 OS=Shewanella sp. (strain W3-18-1)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|A4Y3J8|RF1_SHEPC Peptide chain release factor 1 OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|Q8EAR3|RF1_SHEON Peptide chain release factor 1 OS=Shewanella oneidensis (strain
MR-1) GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|A9L2D4|RF1_SHEB9 Peptide chain release factor 1 OS=Shewanella baltica (strain OS195)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|A4X3K6|RF2_SALTO Peptide chain release factor 2 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=prfB PE=3 SV=1
Length = 373
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 33 NDGYHRNLVSNIDIYSTIPKIDEKDIQE---RF--VRGSGPGGQAVAKTNNCVVLTHIPT 87
N G + + +++ + + D DI E RF R SGPGGQ+V T++ V +THIPT
Sbjct: 208 NQGRRQTSFAGVEVLPVVEQTDHIDIPENEMRFDVYRSSGPGGQSVNTTDSAVRITHIPT 267
Query: 88 GIVIKCHQSRSLSENRKTARELLVA 112
GIV+ C +S +N+ +A +L A
Sbjct: 268 GIVVTCQNEKSQLQNKASALRVLQA 292
>sp|Q0HYK8|RF1_SHESR Peptide chain release factor 1 OS=Shewanella sp. (strain MR-7)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|Q0HFC8|RF1_SHESM Peptide chain release factor 1 OS=Shewanella sp. (strain MR-4)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|A0KT88|RF1_SHESA Peptide chain release factor 1 OS=Shewanella sp. (strain ANA-3)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|A8FYZ0|RF1_SHESH Peptide chain release factor 1 OS=Shewanella sediminis (strain
HAW-EB3) GN=prfA PE=3 SV=1
Length = 361
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 15/96 (15%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+I++ D++ R SG GGQ V KT++ + LTHIP+GIV++C RS +NR A +L
Sbjct: 218 EINKGDLKVDTFRASGAGGQHVNKTDSAIRLTHIPSGIVVECQDQRSQHKNRAQAMSVLT 277
Query: 112 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 146
A+I+ + DEKRR+ +E +R L
Sbjct: 278 --------------ARIQAVEDEKRRSAEESTRRNL 299
>sp|A6WSF0|RF1_SHEB8 Peptide chain release factor 1 OS=Shewanella baltica (strain OS185)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|B8GLA1|RF1_THISH Peptide chain release factor 1 OS=Thioalkalivibrio sp. (strain
HL-EbGR7) GN=prfA PE=3 SV=1
Length = 361
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 51 PKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
P+I+ D++ R SG GGQ V KT++ + LTH+PTGIV++C RS +NR A LL
Sbjct: 217 PEINPADLRVDTYRASGAGGQHVNKTDSAIRLTHLPTGIVVECQDERSQHKNRARAMSLL 276
Query: 111 VAQ 113
A+
Sbjct: 277 AAK 279
>sp|Q6NIM2|RF2_CORDI Peptide chain release factor 2 OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=prfB PE=3 SV=1
Length = 369
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 31 LRNDGYHRNLVSNIDIYSTIPKIDEKDIQERFVR-----GSGPGGQAVAKTNNCVVLTHI 85
N G + + I++ + + D DI + VR SGPGGQ+V T++ V LTHI
Sbjct: 204 FDNQGRRQTSFAEIEVLPVVEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTHI 263
Query: 86 PTGIVIKCHQSRSLSENRKTARELLVAQ 113
PTGIV+ C +S +N+ +A +L A+
Sbjct: 264 PTGIVVTCQNEKSQIQNKASAMRVLQAK 291
>sp|A0QCW7|RF1_MYCA1 Peptide chain release factor 1 OS=Mycobacterium avium (strain 104)
GN=prfA PE=3 SV=1
Length = 357
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+IDE D++ R SG GGQ V T++ V +TH+PTG+V+ C RS +N+ A ++L
Sbjct: 217 QIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGVVVTCQNERSQLQNKARALQVLA 276
Query: 112 AQWDV----QVNGEDSLN--AQIRRIDEKRR 136
A+ Q + E S + +QIR +D R
Sbjct: 277 ARLQAMAEEQASAEASADRASQIRTVDRSER 307
>sp|Q73X48|RF1_MYCPA Peptide chain release factor 1 OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=prfA PE=3 SV=1
Length = 357
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+IDE D++ R SG GGQ V T++ V +TH+PTG+V+ C RS +N+ A ++L
Sbjct: 217 QIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGVVVTCQNERSQLQNKARALQVLA 276
Query: 112 AQWDV----QVNGEDSLN--AQIRRIDEKRR 136
A+ Q + E S + +QIR +D R
Sbjct: 277 ARLQAMAEEQASAEASADRASQIRTVDRSER 307
>sp|B3WDK7|RF1_LACCB Peptide chain release factor 1 OS=Lactobacillus casei (strain BL23)
GN=prfA PE=3 SV=1
Length = 359
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
KID KDI+ R SG GGQ V KT++ V +THIP+GIV+ RS ENR A ++L
Sbjct: 217 KIDPKDIRTDVYRSSGAGGQHVNKTSSAVRMTHIPSGIVVSMQDERSQQENRARAMQIL 275
>sp|Q03A29|RF1_LACC3 Peptide chain release factor 1 OS=Lactobacillus casei (strain ATCC
334) GN=prfA PE=3 SV=1
Length = 359
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL 110
KID KDI+ R SG GGQ V KT++ V +THIP+GIV+ RS ENR A ++L
Sbjct: 217 KIDPKDIRTDVYRSSGAGGQHVNKTSSAVRMTHIPSGIVVSMQDERSQQENRARAMQIL 275
>sp|C0ZXD0|RF2_RHOE4 Peptide chain release factor 2 OS=Rhodococcus erythropolis (strain
PR4 / NBRC 100887) GN=prfB PE=3 SV=1
Length = 368
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+I+E DI+ R SGPGGQ+V T++ V LTHIPTGIV+ C +S +N+ +A +L
Sbjct: 230 EINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQNKVSAMRVLQ 289
Query: 112 AQ 113
A+
Sbjct: 290 AK 291
>sp|A3D0G1|RF1_SHEB5 Peptide chain release factor 1 OS=Shewanella baltica (strain OS155
/ ATCC BAA-1091) GN=prfA PE=3 SV=1
Length = 363
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQALEDEKRRSAEESTRRSLVA 301
>sp|B8E815|RF1_SHEB2 Peptide chain release factor 1 OS=Shewanella baltica (strain OS223)
GN=prfA PE=3 SV=1
Length = 363
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 15/97 (15%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I+ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 219 INPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA- 277
Query: 113 QWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 148
A+I+ + DEKRR+ +E +R L A
Sbjct: 278 -------------ARIQALEDEKRRSAEESTRRSLVA 301
>sp|Q88UT2|RF1_LACPL Peptide chain release factor 1 OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=prfA PE=3 SV=1
Length = 360
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
ID+KDI+ R SG GGQ + KT++ V +TH+PTGIV+ RS +NR A E+L A
Sbjct: 218 IDQKDIRTDVFRSSGAGGQHINKTSSAVRMTHLPTGIVVSMQDQRSQQQNRAKAMEILRA 277
>sp|Q04YD0|RF2_LEPBL Peptide chain release factor 2 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=prfB PE=3 SV=1
Length = 367
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
KI+EKDI+ R SG GGQ V T++ V +TH+P+GIV+ C RS +NR TA ++L
Sbjct: 235 KIEEKDIRVDVYRSSGAGGQHVNTTDSAVRITHLPSGIVVACQNERSQIKNRDTAFKMLK 294
Query: 112 A 112
A
Sbjct: 295 A 295
>sp|Q04V47|RF2_LEPBJ Peptide chain release factor 2 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=prfB PE=3 SV=1
Length = 367
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
KI+EKDI+ R SG GGQ V T++ V +TH+P+GIV+ C RS +NR TA ++L
Sbjct: 235 KIEEKDIRVDVYRSSGAGGQHVNTTDSAVRITHLPSGIVVACQNERSQIKNRDTAFKMLK 294
Query: 112 A 112
A
Sbjct: 295 A 295
>sp|B1MLV1|RF1_MYCA9 Peptide chain release factor 1 OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=prfA PE=3 SV=1
Length = 356
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELL- 110
+IDE D++ R SG GGQ V T++ V +TH+PTGIV+ C RS +N+ A ++L
Sbjct: 216 QIDESDLRIDVYRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLA 275
Query: 111 -----VAQWDVQVNGEDSLNAQIRRIDEKRR 136
+A+ Q + +QIR +D R
Sbjct: 276 ARLQALAEEQAQADASAGRASQIRTVDRSER 306
>sp|Q2JEW7|RF2_FRASC Peptide chain release factor 2 OS=Frankia sp. (strain CcI3) GN=prfB
PE=3 SV=1
Length = 366
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
ID+KD++ R SGPGGQ V T++ V +TH+PTGIV+ C RS +N+ A +L A
Sbjct: 228 IDDKDLRIDIFRSSGPGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKAAAMIVLQA 287
Query: 113 Q 113
+
Sbjct: 288 K 288
>sp|Q6A808|RF2_PROAC Peptide chain release factor 2 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=prfB PE=3 SV=1
Length = 368
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 33 NDGYHRNLVSNIDIYSTIPKIDEKDIQERFVR-----GSGPGGQAVAKTNNCVVLTHIPT 87
N G + + +++ + + D DI E +R SGPGGQ V T++ V LTH+PT
Sbjct: 208 NQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTHLPT 267
Query: 88 GIVIKCHQSRSLSENRKTARELLVAQ 113
GIV+ C RS +N+ A +L A+
Sbjct: 268 GIVVSCQNERSQIQNKAAALRVLQAK 293
>sp|A0LDT7|RF1_MAGSM Peptide chain release factor 1 OS=Magnetococcus sp. (strain MC-1)
GN=prfA PE=3 SV=1
Length = 361
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I++KD++ R SGPGGQ+V T++ V +TH+PTG+V+ C +S +N+ A ++L A
Sbjct: 218 IEDKDLRIDVYRSSGPGGQSVNTTDSAVRITHLPTGLVVICQDEKSQHKNKAKAMKVLQA 277
Query: 113 Q-WDVQVNGEDSLNAQIRR 130
+ D Q DS A+ R+
Sbjct: 278 RLLDAQQQAADSQRAEARK 296
>sp|Q8FQ31|RF1_COREF Peptide chain release factor 1 OS=Corynebacterium efficiens (strain
DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=prfA PE=3 SV=1
Length = 358
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+IDEK+I+ R SG GGQ V T++ V +TH+PTGIV+ C + RS +NR A ++L
Sbjct: 217 EIDEKEIRVDVYRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQKERSQIQNRARAMQVLA 276
Query: 112 A 112
A
Sbjct: 277 A 277
>sp|A5WFG1|RF1_PSYWF Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1)
GN=prfA PE=3 SV=1
Length = 364
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 40 LVSNIDIYSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSL 99
++ ++I T+ +++ DI+ R SG GGQ V T++ V LTHIPTG+V +C Q RS
Sbjct: 208 VMPEVEIDDTV-ELNPADIRMDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQ 266
Query: 100 SENRKTARELLVA 112
+NR A ++L+A
Sbjct: 267 HKNRAKAMQMLIA 279
>sp|Q5QUZ8|RF1_IDILO Peptide chain release factor 1 OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=prfA PE=3 SV=1
Length = 364
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 15/96 (15%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+I+ D++ R SG GGQ V +T++ + LTHIPTG+V++C + RS +NR A +
Sbjct: 219 EINPADLRVDTYRASGAGGQHVNRTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMSV-- 276
Query: 112 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 146
L A+I+R+ DEKR+A ++ +R L
Sbjct: 277 ------------LQARIQRLEDEKRQAEEDSTRRNL 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,078,435
Number of Sequences: 539616
Number of extensions: 2256612
Number of successful extensions: 10726
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 9672
Number of HSP's gapped (non-prelim): 1085
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)