Query psy2492
Match_columns 162
No_of_seqs 159 out of 1185
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:37:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5a_X RF1, peptide chain rele 100.0 7.3E-41 2.5E-45 292.3 13.5 116 2-119 154-278 (354)
2 2b3t_B RF-1, peptide chain rel 100.0 6.3E-41 2.2E-45 293.3 13.1 117 2-120 158-284 (360)
3 1gqe_A Release factor 2, RF2; 100.0 6.4E-41 2.2E-45 293.7 12.9 116 2-119 175-300 (365)
4 1zbt_A RF-1, peptide chain rel 100.0 8.9E-41 3.1E-45 293.2 11.7 116 2-119 172-296 (371)
5 1rq0_A RF-1, peptide chain rel 100.0 9.3E-41 3.2E-45 290.5 11.6 116 2-119 135-259 (342)
6 2ihr_1 Peptide chain release f 100.0 1.9E-40 6.4E-45 290.7 13.3 116 2-119 163-288 (365)
7 2rsm_A Probable peptide chain 100.0 4.9E-36 1.7E-40 226.1 9.5 96 28-123 11-113 (115)
8 4dh9_Y YAEJ; ribosome, YAEJ, r 100.0 8.2E-34 2.8E-38 220.6 7.3 102 47-148 4-137 (140)
9 2jva_A Peptidyl-tRNA hydrolase 100.0 8.3E-29 2.8E-33 185.1 8.7 74 48-121 5-102 (108)
10 1j26_A Immature colon carcinom 100.0 2.2E-28 7.5E-33 183.8 11.0 73 48-120 12-109 (112)
11 2axy_A Poly(RC)-binding protei 64.9 3.5 0.00012 27.1 2.1 47 67-116 21-72 (73)
12 2ctl_A Vigilin; K homology typ 59.8 8 0.00027 26.9 3.3 49 67-118 33-89 (97)
13 2ctf_A Vigilin; K homology typ 57.9 9.7 0.00033 26.8 3.5 49 67-118 43-94 (102)
14 1vig_A Vigilin; RNA-binding pr 57.2 6.9 0.00023 25.5 2.5 44 67-113 21-69 (71)
15 2ctm_A Vigilin; K homology typ 55.2 13 0.00045 25.7 3.8 50 67-119 33-88 (95)
16 1x4n_A FAR upstream element bi 53.1 21 0.00071 24.3 4.5 53 67-122 31-90 (92)
17 2hh3_A KH-type splicing regula 51.2 16 0.00056 25.8 3.8 51 67-120 27-84 (106)
18 2cte_A Vigilin; K homology typ 49.7 11 0.00037 25.9 2.6 49 67-119 33-87 (94)
19 2ctk_A Vigilin; K homology typ 45.1 22 0.00076 24.9 3.7 47 67-118 33-86 (104)
20 2p2r_A Poly(RC)-binding protei 44.3 14 0.00047 24.1 2.3 46 67-115 21-73 (76)
21 2jvz_A KH type-splicing, FAR u 42.7 35 0.0012 24.7 4.6 49 67-118 107-162 (164)
22 1dtj_A RNA-binding neurooncolo 39.1 15 0.00053 23.7 1.9 46 67-115 19-74 (76)
23 1ec6_A RNA-binding protein NOV 38.7 25 0.00084 23.5 3.0 48 67-117 19-76 (87)
24 2ctj_A Vigilin; K homology typ 38.4 18 0.00063 25.1 2.4 49 67-118 33-87 (95)
25 1x4m_A FAR upstream element bi 36.4 23 0.00079 24.1 2.6 48 67-119 31-89 (94)
26 1tua_A Hypothetical protein AP 32.8 81 0.0028 24.7 5.5 75 67-157 114-190 (191)
27 3krm_A Insulin-like growth fac 31.4 27 0.00093 25.5 2.4 50 67-119 101-159 (163)
28 1j5k_A Heterogeneous nuclear r 31.1 39 0.0013 22.7 3.0 48 67-117 30-84 (89)
29 2opv_A KHSRP protein; KH domai 28.2 26 0.00088 23.3 1.6 44 67-115 30-84 (85)
30 1zzk_A Heterogeneous nuclear r 26.9 51 0.0017 21.6 3.0 48 67-117 23-77 (82)
31 1wvn_A Poly(RC)-binding protei 23.1 28 0.00096 22.9 1.1 48 67-117 22-76 (82)
32 1we8_A Tudor and KH domain con 22.4 45 0.0015 23.0 2.1 46 67-117 31-87 (104)
33 2yqr_A KIAA0907 protein; struc 21.2 92 0.0031 22.5 3.6 25 89-117 76-100 (119)
No 1
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=7.3e-41 Score=292.32 Aligned_cols=116 Identities=26% Similarity=0.343 Sum_probs=105.6
Q ss_pred ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccC--CCCCCcCCCCeEEEEeecCCCCCcc
Q psy2492 2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIY--STIPKIDEKDIQERFVRGSGPGGQA 72 (162)
Q Consensus 2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~--~~~~~i~~~dl~i~~~RssGpGGQ~ 72 (162)
|||+|++.|+|++||| +|++|+|||||||+|||++.+. + .| -|. ..++.|+++||+|+|+|||||||||
T Consensus 154 G~k~v~~~i~G~~ayg--~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~ 231 (354)
T 3d5a_X 154 GFSKVVFEVRGPGAYG--TFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQG 231 (354)
T ss_dssp SEEEEEEEEESTTHHH--HHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHH
T ss_pred ccEEEEEEEECccHHH--HHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCcc
Confidence 7999999999999999 9999999999999999976543 2 22 243 2357799999999999999999999
Q ss_pred cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+..
T Consensus 232 VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 278 (354)
T 3d5a_X 232 VNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKR 278 (354)
T ss_dssp HHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 2
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=6.3e-41 Score=293.26 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=106.3
Q ss_pred ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--c--cccCCCC---CCcCCCCeEEEEeecCCCCCc
Q psy2492 2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--N--IDIYSTI---PKIDEKDIQERFVRGSGPGGQ 71 (162)
Q Consensus 2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~--v~~~~~~---~~i~~~dl~i~~~RssGpGGQ 71 (162)
|||+|++.|+|++||| +|++|+|||||||+||+++.+. + . |-|...+ +.|+++||+|+|+||||||||
T Consensus 158 G~k~~~~~i~G~~ayg--~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ 235 (360)
T 2b3t_B 158 GYKEIIAKISGDGVYG--RLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQ 235 (360)
T ss_dssp SEEEEEEEECSSSCHH--HHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTT
T ss_pred CceEEEEEEEcccHHH--HHHhccCeEEEEecCCCcccCcCCccceEEEEecCcccccccccChhheEEeeecCCCCCCC
Confidence 7999999999999999 9999999999999999976543 2 2 3344333 669999999999999999999
Q ss_pred ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy2492 72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNG 120 (162)
Q Consensus 72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~ 120 (162)
|||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+...
T Consensus 236 ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~ 284 (360)
T 2b3t_B 236 HVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMA 284 (360)
T ss_dssp TCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTT
T ss_pred ccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998774
No 3
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=6.4e-41 Score=293.74 Aligned_cols=116 Identities=28% Similarity=0.355 Sum_probs=105.5
Q ss_pred ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccCC---CCCCcCCCCeEEEEeecCCCCCc
Q psy2492 2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIYS---TIPKIDEKDIQERFVRGSGPGGQ 71 (162)
Q Consensus 2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~~---~~~~i~~~dl~i~~~RssGpGGQ 71 (162)
|||+|++.|+|++||| +|++|+|||||||+|||++.+. + .|-|.. .++.|+++||+|+|+||||||||
T Consensus 175 G~Ks~~~~I~G~~ayg--~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ 252 (365)
T 1gqe_A 175 GIKSVTIKISGDYAYG--WLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ 252 (365)
T ss_dssp SEEEEEEEEESTTHHH--HHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCC
T ss_pred ceeEEEEEEECcCHHH--HhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCC
Confidence 7999999999999999 9999999999999999976553 2 222432 35789999999999999999999
Q ss_pred ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
|||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|.+...
T Consensus 253 ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 300 (365)
T 1gqe_A 253 HVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEM 300 (365)
T ss_dssp STTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 4
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=8.9e-41 Score=293.18 Aligned_cols=116 Identities=23% Similarity=0.257 Sum_probs=96.4
Q ss_pred ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccCC--CCCCcCCCCeEEEEeecCCCCCcc
Q psy2492 2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIYS--TIPKIDEKDIQERFVRGSGPGGQA 72 (162)
Q Consensus 2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~~--~~~~i~~~dl~i~~~RssGpGGQ~ 72 (162)
|||+|++.|+|++||| +|++|+|||||||+|||++.+. + .| -|.. .++.|+++||+|+|+|||||||||
T Consensus 172 G~ksv~~~I~G~~ayg--~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~ 249 (371)
T 1zbt_A 172 GLKEVVAMVSGQSVYS--KLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQN 249 (371)
T ss_dssp CEEEEEEEEESTTHHH--HHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECC-------
T ss_pred CceEEEEEEECccHHH--HHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccccccCcCcEEEEEecCCCCCCCc
Confidence 7999999999999999 9999999999999999976543 2 22 2432 346799999999999999999999
Q ss_pred cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+..
T Consensus 250 VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~ 296 (371)
T 1zbt_A 250 VNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFA 296 (371)
T ss_dssp --CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998874
No 5
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=9.3e-41 Score=290.52 Aligned_cols=116 Identities=30% Similarity=0.375 Sum_probs=101.2
Q ss_pred ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c--cc--ccCC--CCCCcCCCCeEEEEeecCCCCCcc
Q psy2492 2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S--NI--DIYS--TIPKIDEKDIQERFVRGSGPGGQA 72 (162)
Q Consensus 2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~--~v--~~~~--~~~~i~~~dl~i~~~RssGpGGQ~ 72 (162)
|||+|++.|+|++||| +|++|+|||||||+||+++.+. + .| -|.. .++.|+++||+|+|+|||||||||
T Consensus 135 G~ks~~~~I~G~~ayg--~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGGQ~ 212 (342)
T 1rq0_A 135 GIREVVFFVKGKNAYG--ILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQY 212 (342)
T ss_dssp CEEEEEEEEESTTHHH--HHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----C
T ss_pred ccEEEEEEEECcCHHH--HHhhccCeEEEEecCCcccCCCCcccceEEEEeccccccccccChhHeEEEeecCCCCCCcc
Confidence 7999999999999999 9999999999999999976543 2 22 2332 346799999999999999999999
Q ss_pred cccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 73 VAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 73 VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|..+..
T Consensus 213 VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 259 (342)
T 1rq0_A 213 VNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQK 259 (342)
T ss_dssp CSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998864
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=1.9e-40 Score=290.71 Aligned_cols=116 Identities=26% Similarity=0.392 Sum_probs=105.5
Q ss_pred ceeEEEEEeeccchhhhhhhhcccceeEEeecCCCccccc---c----ccccC---CCCCCcCCCCeEEEEeecCCCCCc
Q psy2492 2 MIKIVMWPMRDRNLAGIRLLESQVTITRELRNDGYHRNLV---S----NIDIY---STIPKIDEKDIQERFVRGSGPGGQ 71 (162)
Q Consensus 2 ~ik~~~~~i~g~~ayg~~~l~~E~GvHR~~R~~~~~~~~~---~----~v~~~---~~~~~i~~~dl~i~~~RssGpGGQ 71 (162)
|||+|++.|+|++||| +|++|+|||||||+|||++.+. + .|-|. ..++.|+++||+|+|+||||||||
T Consensus 163 G~ks~~~~I~G~~ayg--~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ 240 (365)
T 2ihr_1 163 GIDYAQILVKGENAYG--LLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQ 240 (365)
T ss_dssp SEEEEEEEEESTTHHH--HHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCC
T ss_pred CeEEEEEEEEccCHHH--hhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCc
Confidence 7999999999999999 9999999999999999976543 2 22232 245789999999999999999999
Q ss_pred ccccccceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 72 ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
|||||+|+|+|+|+||||+|+||++|||++||+.|+++|+++|++...
T Consensus 241 ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 288 (365)
T 2ihr_1 241 GVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELER 288 (365)
T ss_dssp SGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=4.9e-36 Score=226.13 Aligned_cols=96 Identities=43% Similarity=0.724 Sum_probs=86.6
Q ss_pred eEEeecCCCcccccc----cccc---CCCCCCcCCCCeEEEEeecCCCCCcccccccceEEEEecCceeEEEEcCcCCHH
Q psy2492 28 TRELRNDGYHRNLVS----NIDI---YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLS 100 (162)
Q Consensus 28 HR~~R~~~~~~~~~~----~v~~---~~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h~Ptgi~v~~~~~RSq~ 100 (162)
|||||+|++.+..++ .+.| .+..+.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+||++|||+
T Consensus 11 ~rvqrvp~tes~gts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~ 90 (115)
T 2rsm_A 11 LRLQEKPALLFPGMAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVD 90 (115)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHH
T ss_pred eeEEecCcccCCccceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHH
Confidence 899999999766543 2323 355688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q psy2492 101 ENRKTARELLVAQWDVQVNGEDS 123 (162)
Q Consensus 101 ~Nk~~A~~rL~~~L~~~~~~~ps 123 (162)
+||+.|+++|+++|+++++++++
T Consensus 91 ~Nr~~A~~~L~~kL~e~~~~~~s 113 (115)
T 2rsm_A 91 QNRKIARKVLQEKVDVFYNSGPS 113 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999988765
No 8
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=100.00 E-value=8.2e-34 Score=220.58 Aligned_cols=102 Identities=27% Similarity=0.358 Sum_probs=92.4
Q ss_pred CCCCCCcCCCCeEEEEeecCCCCCcccccccceEEEE------ecCc------------------eeEEEEcCcCCHHHH
Q psy2492 47 YSTIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT------HIPT------------------GIVIKCHQSRSLSEN 102 (162)
Q Consensus 47 ~~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~------h~Pt------------------gi~v~~~~~RSq~~N 102 (162)
++..+.|+++||+|+|+|||||||||||||+|+|+|+ |+|+ +|+|+||++|||++|
T Consensus 4 i~~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~N 83 (140)
T 4dh9_Y 4 ISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELN 83 (140)
T ss_dssp CCSSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHH
T ss_pred ccCCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHH
Confidence 3467899999999999999999999999999999999 6997 599999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHhh-HHHHhhhhHH
Q psy2492 103 RKTARELLVAQWDVQVNG-------EDSLNAQIRRIDEKRRAT-QEQKKRKLDA 148 (162)
Q Consensus 103 k~~A~~rL~~~L~~~~~~-------~ps~~a~~kRl~~Kk~~~-~K~~r~k~~~ 148 (162)
+++|+++|.++|.+++.+ +|+++++++||+.|++++ +|++|+++++
T Consensus 84 r~~A~~rL~~~l~~a~~~pk~R~~tkpt~~s~~rRl~~Kk~rs~~K~~R~k~~~ 137 (140)
T 4dh9_Y 84 REAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRS 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCCCCSSTTTHHHHHHHHHHHHHTSCCC----
T ss_pred HHHHHHHHHHHHHHhccCCCCCcCCCCcHHHHHHHHHHHHHHhHHhhccCCCCC
Confidence 999999999999999886 589999999999999999 9999988764
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.95 E-value=8.3e-29 Score=185.12 Aligned_cols=74 Identities=30% Similarity=0.390 Sum_probs=69.8
Q ss_pred CCCCCcCCCCeEEEEeecCCCCCcccccccceEEEEe------cC-----------------ce-eEEEEcCcCCHHHHH
Q psy2492 48 STIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTH------IP-----------------TG-IVIKCHQSRSLSENR 103 (162)
Q Consensus 48 ~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~h------~P-----------------tg-i~v~~~~~RSq~~Nk 103 (162)
+..+.|+++||+|+|+|||||||||||||+|+|+|+| +| +| |+|+||++|||++|+
T Consensus 5 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr 84 (108)
T 2jva_A 5 SNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNR 84 (108)
T ss_dssp SSSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHH
T ss_pred ccccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHH
Confidence 4568899999999999999999999999999999999 88 88 999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCC
Q psy2492 104 KTARELLVAQWDVQVNGE 121 (162)
Q Consensus 104 ~~A~~rL~~~L~~~~~~~ 121 (162)
++|+++|.++|.++..++
T Consensus 85 ~~Al~rL~~~l~~a~~~~ 102 (108)
T 2jva_A 85 ADALLRLSELIVNAAKLE 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHccCc
Confidence 999999999999988653
No 10
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.95 E-value=2.2e-28 Score=183.85 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.1
Q ss_pred CCCCCcCCCCeEEEEeecCCCCCcccccccceEEEE-ecCce------------------------eEEEEcCcCCHHHH
Q psy2492 48 STIPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT-HIPTG------------------------IVIKCHQSRSLSEN 102 (162)
Q Consensus 48 ~~~~~i~~~dl~i~~~RssGpGGQ~VNKt~s~V~l~-h~Ptg------------------------i~v~~~~~RSq~~N 102 (162)
...+.|+++||+|+|+|||||||||||||+|+|+|+ |+|++ |+|+||++|||++|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence 345789999999999999999999999999999998 99997 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy2492 103 RKTARELLVAQWDVQVNG 120 (162)
Q Consensus 103 k~~A~~rL~~~L~~~~~~ 120 (162)
+++|+++|.++|.+++.+
T Consensus 92 r~~Al~rL~~~l~~a~~~ 109 (112)
T 1j26_A 92 LAECLQKIRDMIAEASGP 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999999999999764
No 11
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=64.94 E-value=3.5 Score=27.08 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=33.1
Q ss_pred CCCCcccccc--cceEEEEecCcee---EEEEcCcCCHHHHHHHHHHHHHHHHHH
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPTGI---VIKCHQSRSLSENRKTARELLVAQWDV 116 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Ptgi---~v~~~~~RSq~~Nk~~A~~rL~~~L~~ 116 (162)
|+||.+++.- +|.++|.-.+.|. +|....+ ..+-..|...+..+|.+
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHhc
Confidence 8999999954 6788887777652 3444443 45778888888887753
No 12
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=59.84 E-value=8 Score=26.88 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=35.0
Q ss_pred CCCCcccccc--cceEEEEecCce------eEEEEcCcCCHHHHHHHHHHHHHHHHHHhh
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPTG------IVIKCHQSRSLSENRKTARELLVAQWDVQV 118 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Ptg------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 118 (162)
|+||.++|+- +|.|+|...+.| -.|..... ..|-+.|...+..++.+..
T Consensus 33 GkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 33 GRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGELE 89 (97)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHHH
Confidence 8999999954 588888876665 13444443 3578889988888876654
No 13
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=57.90 E-value=9.7 Score=26.82 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=33.2
Q ss_pred CCCCccccccc---ceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhh
Q psy2492 67 GPGGQAVAKTN---NCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQV 118 (162)
Q Consensus 67 GpGGQ~VNKt~---s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 118 (162)
|+||+++++.. +.|.|.+....=.|+.... ...-+.|...|..++.+..
T Consensus 43 G~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHIEFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEEEECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEEEeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHHH
Confidence 89999999654 3687754333334555554 5567788888888776654
No 14
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=57.18 E-value=6.9 Score=25.53 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCCCccccc--ccceEEEEecCcee---EEEEcCcCCHHHHHHHHHHHHHHH
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPTGI---VIKCHQSRSLSENRKTARELLVAQ 113 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Ptgi---~v~~~~~RSq~~Nk~~A~~rL~~~ 113 (162)
||||.++|+ -+|.|.|...+.|- .|..... . .+-+.|.+.+..+
T Consensus 21 G~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~--~~v~~A~~~I~~i 69 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-P--QGVQQAKRELLEL 69 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-S--HHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-H--HHHHHHHHHHHHH
Confidence 899999995 46889988877771 2233333 2 4677787777654
No 15
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.18 E-value=13 Score=25.71 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCCCcccccc--cceEEEEecCcee----EEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPTGI----VIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Ptgi----~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
|+||.+++.- +|.|.|..-+.|- .|..... ..|-+.|.+.|..++.+...
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHHHHHH
Confidence 8999999954 5788888766661 3333333 36889999999998877765
No 16
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=53.13 E-value=21 Score=24.27 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=35.0
Q ss_pred CCCCcccccc--cceEEEEecCc--e---eEEEEcCcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPT--G---IVIKCHQSRSLSENRKTARELLVAQWDVQVNGED 122 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Pt--g---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~p 122 (162)
|+||.+++.- +|.++|...+. | -.|....+ ..+-+.|...+.+.|.+....++
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~---~e~v~~A~~~I~~~i~~~~~~p~ 90 (92)
T 1x4n_A 31 GRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT---PESVQSAKRLLDQIVEKGRSGPS 90 (92)
T ss_dssp CSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC---HHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHhcccCCC
Confidence 8889888843 46666666543 1 23444443 46788899999999887765443
No 17
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=51.20 E-value=16 Score=25.79 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=33.9
Q ss_pred CCCCcccccc--cceEEEEecCce-----eEEEEcCcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQWDVQVNG 120 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~ 120 (162)
|+||.+++.- +|.|+|...+.+ -+|....+ ..+-+.|.+.+.+++.+....
T Consensus 27 GkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~---~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 27 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS---HHHHHHHHHHHHHHHHHHC--
T ss_pred CCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC---HHHHHHHHHHHHHHHhccccC
Confidence 8889888844 466666665432 23444444 567889999999999887765
No 18
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=49.65 E-value=11 Score=25.87 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCCCcccccc--cceEEEEecC----ceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIP----TGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~P----tgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
|+||.++++- +|.|+|...+ +|. |..... ..+-+.|...+..++.+...
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~-V~I~G~---~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQ-IKITGT---KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCE-EEEEEC---HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCe-EEEEEC---HHHHHHHHHHHHHHhhcccc
Confidence 9999999954 4677766643 343 333333 56888899999998877654
No 19
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=45.07 E-value=22 Score=24.90 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=34.1
Q ss_pred CCCCccccc--ccceEEEEecCce-----eEEEEcCcCCHHHHHHHHHHHHHHHHHHhh
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQWDVQV 118 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 118 (162)
|+||-++++ -+|.|.|...+.| ++|.. . . .|-+.|...+..++.+..
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G--~--~-e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITG--L--A-ANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEE--C--H-HHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEc--C--H-HHHHHHHHHHHHHHhhHH
Confidence 999999995 4588888876665 33333 2 2 678889999888876654
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=44.32 E-value=14 Score=24.08 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=29.0
Q ss_pred CCCCccccc--ccceEEEEecC-----ceeEEEEcCcCCHHHHHHHHHHHHHHHHH
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIP-----TGIVIKCHQSRSLSENRKTARELLVAQWD 115 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~P-----tgi~v~~~~~RSq~~Nk~~A~~rL~~~L~ 115 (162)
|+||.+++. -.|.++|...+ +.=.|....+ ..+-+.|...+.+.|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS---AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC---HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC---HHHHHHHHHHHHHHHH
Confidence 889998883 34666666544 1233444443 4577788888887764
No 21
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=42.70 E-value=35 Score=24.71 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=34.4
Q ss_pred CCCCccccc--ccceEEEEecCc-----eeEEEEcCcCCHHHHHHHHHHHHHHHHHHhh
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQV 118 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 118 (162)
|+||.+++. ..|.|+|...+. .=.|....+ ..+-+.|...+.++|....
T Consensus 107 Gk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 107 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp CSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC---HHHHHHHHHHHHHHHhhhh
Confidence 999999983 457777776542 334455554 4588899999988887654
No 22
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=39.13 E-value=15 Score=23.65 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCCCccccc--ccceEEEEecCc--------eeEEEEcCcCCHHHHHHHHHHHHHHHHH
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPT--------GIVIKCHQSRSLSENRKTARELLVAQWD 115 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Pt--------gi~v~~~~~RSq~~Nk~~A~~rL~~~L~ 115 (162)
|+||.+++. -.|.++|...+. .-.|....+ ..+-..|...+.+.|.
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVT 74 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES---HHHHHHHHHHHHHHCC
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 889999883 346666665442 134444444 4577788887777653
No 23
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=38.69 E-value=25 Score=23.46 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=32.0
Q ss_pred CCCCccccc--ccceEEEEecCc--------eeEEEEcCcCCHHHHHHHHHHHHHHHHHHh
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPT--------GIVIKCHQSRSLSENRKTARELLVAQWDVQ 117 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Pt--------gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 117 (162)
|+||.+++. -.|.++|...+. .-.|....+ ..+-+.|...+.+.|.+.
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhcc
Confidence 889988883 346666655432 135555554 457788999888887654
No 24
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.38 E-value=18 Score=25.05 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=32.7
Q ss_pred CCCCcccccc--cc-eEEEEecCce---eEEEEcCcCCHHHHHHHHHHHHHHHHHHhh
Q psy2492 67 GPGGQAVAKT--NN-CVVLTHIPTG---IVIKCHQSRSLSENRKTARELLVAQWDVQV 118 (162)
Q Consensus 67 GpGGQ~VNKt--~s-~V~l~h~Ptg---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 118 (162)
||||.+++.- ++ .|.|.+...| -.|..... . .+-+.|.+++..++.+..
T Consensus 33 G~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~--~-~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 33 GTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGP--S-SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESC--H-HHHHHHHHHHHHHHHHHS
T ss_pred CCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcC--H-HHHHHHHHHHHHHHhhhh
Confidence 8999999964 45 6888776666 12333322 1 277888888888877654
No 25
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=36.41 E-value=23 Score=24.12 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=30.0
Q ss_pred CCCCccccc--ccceEEEEecCce---------eEEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPTG---------IVIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Ptg---------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
|+||.+++. -.|.|+|.....+ ++|.. +.. +-+.|...+.++|.+...
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G--~~~---~v~~A~~~I~~~i~~~~~ 89 (94)
T 1x4m_A 31 GKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--DPY---KVQQAKEMVLELIRDQGS 89 (94)
T ss_dssp CSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE--CTT---THHHHHHHHHHHHCCCSS
T ss_pred CCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe--CHH---HHHHHHHHHHHHHhccCC
Confidence 888888883 3466666654332 44443 322 567788888888766543
No 26
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=32.79 E-value=81 Score=24.66 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCCCccccccc--ceEEEEecCceeEEEEcCcCCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhHHHHhh
Q psy2492 67 GPGGQAVAKTN--NCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKR 144 (162)
Q Consensus 67 GpGGQ~VNKt~--s~V~l~h~Ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~ps~~a~~kRl~~Kk~~~~K~~r~ 144 (162)
|+||.+...-+ |.|+|....+.+.+-. .+.|-+.|...+...+. +.|- +.....++..+ +..|
T Consensus 114 Gk~G~tik~iE~~Tg~~I~v~~~~v~i~G-----~~~~i~~Ar~~i~~li~----g~~h-~~vy~~~~~~~-~~~k---- 178 (191)
T 1tua_A 114 GEGGRARRTIEEMTDTYINVGEYEVAIIG-----DYERAMAAKQAIEMLAE----GRMH-STVYRHLERIM-REIK---- 178 (191)
T ss_dssp CGGGHHHHHHHHHHTCEEEECSSEEEEEE-----EHHHHHHHHHHHHHHHT----TCCH-HHHHHHHHHHH-HHHH----
T ss_pred CCCccHHHHHHHHHCceEEEcCCEEEEEe-----ChHHHHHHHHHHHHHHc----CCCc-hhHHHHHHHHH-HHHH----
Confidence 88999887554 6677777666555543 24577888888888774 2222 44455555442 2222
Q ss_pred hhHHHHHHHHHhh
Q psy2492 145 KLDALKKAWKERE 157 (162)
Q Consensus 145 k~~~~k~~~~~~~ 157 (162)
.++++..|++.+
T Consensus 179 -~~~~~~~~~~~~ 190 (191)
T 1tua_A 179 -RRERLKMWAREE 190 (191)
T ss_dssp -HHHHHHHHHHC-
T ss_pred -HHHHHHHhhccC
Confidence 233445788764
No 27
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=31.35 E-value=27 Score=25.45 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=35.3
Q ss_pred CCCCcccccc--cceEEEEecCcee-------EEEEcCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPTGI-------VIKCHQSRSLSENRKTARELLVAQWDVQVN 119 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Ptgi-------~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 119 (162)
|+||.+++.- .|.+.|...+.+. .|....+ ..+-+.|...+.+.|.+...
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH---FYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC---HHHHHHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHHHHH
Confidence 8999999964 4888887654442 4555553 35678888888888887654
No 28
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=31.15 E-value=39 Score=22.65 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=29.1
Q ss_pred CCCCcccccc--cceEEEEecCc-----eeEEEEcCcCCHHHHHHHHHHHHHHHHHHh
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQ 117 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 117 (162)
|+||.+++.- +|.++|...+. .=.|....+ ..+-+.|...+.+.|.+.
T Consensus 30 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~---~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 30 GKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT---QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC---HHHHHHHHHHHHHHHHhh
Confidence 7788887732 35555554331 223334433 357788999998888765
No 29
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=28.23 E-value=26 Score=23.32 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCCCccccc--ccceEEEEecCce---------eEEEEcCcCCHHHHHHHHHHHHHHHHH
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPTG---------IVIKCHQSRSLSENRKTARELLVAQWD 115 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Ptg---------i~v~~~~~RSq~~Nk~~A~~rL~~~L~ 115 (162)
|+||.+++. -.|.|+|.-...| +.|.. ++ .+-+.|.+.+.+++.
T Consensus 30 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G----~~-~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 30 GKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG----DP-YKVQQACEMVMDILR 84 (85)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE----CH-HHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe----CH-HHHHHHHHHHHHHhc
Confidence 788888873 3466666655444 44443 22 356777777777653
No 30
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=26.90 E-value=51 Score=21.63 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=30.6
Q ss_pred CCCCccccc--ccceEEEEecCc-----eeEEEEcCcCCHHHHHHHHHHHHHHHHHHh
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQ 117 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~Pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 117 (162)
|+||.+++. .+|.++|...+. .-.|....+ ..+-+.|...+.+.+.+.
T Consensus 23 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 23 GKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT---QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHhc
Confidence 889998883 345666654332 123444443 357788888888888764
No 31
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=23.15 E-value=28 Score=22.90 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=28.6
Q ss_pred CCCCcccccc--cceEEEEecCc-----eeEEEEcCcCCHHHHHHHHHHHHHHHHHHh
Q psy2492 67 GPGGQAVAKT--NNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQ 117 (162)
Q Consensus 67 GpGGQ~VNKt--~s~V~l~h~Pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 117 (162)
|+||.+++.- .|.++|...+. .=.|....+ . .+-+.|...+.+.|.+.
T Consensus 22 GkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~--~-~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 22 GRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS--A-ASISLAQYLINARLSSE 76 (82)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC--H-HHHHHHHHHHHHHTC--
T ss_pred CCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC--H-HHHHHHHHHHHHHHHhh
Confidence 8899999843 36666665431 223344433 2 56777888888776543
No 32
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=22.42 E-value=45 Score=23.03 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=29.1
Q ss_pred CCCCccccc--ccceEEEEecC--------ce-eEEEEcCcCCHHHHHHHHHHHHHHHHHHh
Q psy2492 67 GPGGQAVAK--TNNCVVLTHIP--------TG-IVIKCHQSRSLSENRKTARELLVAQWDVQ 117 (162)
Q Consensus 67 GpGGQ~VNK--t~s~V~l~h~P--------tg-i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 117 (162)
|+||.+++. -+|.|+|.-.+ .+ ++|....+ +-+.|...+.++|.+.
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 31 GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSED 87 (104)
T ss_dssp TTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhhC
Confidence 899999983 34666666543 33 33333322 5688888888887654
No 33
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.16 E-value=92 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=15.2
Q ss_pred eEEEEcCcCCHHHHHHHHHHHHHHHHHHh
Q psy2492 89 IVIKCHQSRSLSENRKTARELLVAQWDVQ 117 (162)
Q Consensus 89 i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 117 (162)
+.|.+.+ ..+.+.|.+.+..+|...
T Consensus 76 V~I~a~~----~e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 76 IYISHPK----PEGLAAAKKLCENLLQTV 100 (119)
T ss_dssp EEEEESS----HHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC----HHHHHHHHHHHHHHhhch
Confidence 4555543 245667777777776654
Done!