RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2492
(162 letters)
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 60.7 bits (147), Expect = 2e-13
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 25/86 (29%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHI-------------------------P 86
I + + R SGPGGQ V K N+ +
Sbjct: 16 YIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKA 75
Query: 87 TGIVIKCHQSRSLSENRKTARELLVA 112
+V+ SR N + +
Sbjct: 76 GELVLTSESSRYQFRNLAECLQKIRD 101
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 52.0 bits (124), Expect = 3e-09
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 23 SQVTITRELRNDGYHRNLVSNIDIYSTIPK-----IDEKDIQERFVRGSGPGGQAVAKTN 77
+V + G + + +P ++ D++ R SG GGQ V T+
Sbjct: 172 HRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTD 231
Query: 78 NCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRA 137
+ + +TH+PTGIV++C RS +N+ A L A+I + +R
Sbjct: 232 SAIRITHLPTGIVVECQDERSQHKNKAKAL--------------SVLGARIHAAEMAKRQ 277
Query: 138 TQEQKKRKLDALKKAWKER 156
E R+ +R
Sbjct: 278 QAEASTRRNLLGSGDRSDR 296
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 47.8 bits (113), Expect = 9e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 53 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 112
I +D++ R SG GGQ V KT + V +TH+PTGIV+ C RS +N++TA +L A
Sbjct: 193 IRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRA 252
Query: 113 Q-WDVQVNGEDSLNAQIRRID 132
+ + +Q ++ +Q R+
Sbjct: 253 RLYQLQKEQKEREISQKRKSQ 273
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 45.0 bits (106), Expect = 1e-06
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 52 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 111
+I+ D++ R SG GGQ V +T + V +THIPTGIV +C RS +N+ A + +
Sbjct: 230 EINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMK 289
Query: 112 AQ-WDVQVNGEDSLNAQIRR 130
A+ ++V++ +++ +
Sbjct: 290 AKLYEVEMQKKNAEKQAMED 309
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.0 bits (57), Expect = 2.5
Identities = 2/53 (3%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 104 KTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRA--TQEQKKRKLDA-LKKAW 153
+ A ++ + +++ + + + ++ + ++ + + L + +
Sbjct: 621 QIASDVYGGYFIFEMDPQVAARKILDALEYRTWKLGVHKEVAERYETKLCQGY 673
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 25.0 bits (54), Expect = 4.7
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 101 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKL 146
++R T+ LL ++ ++ + I+R + R + RK+
Sbjct: 256 QDRPTSEVLLKHRFVLRERPPTVIMDLIQRTKDAVRELDNLQYRKM 301
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
{Acanthamoeba castellanii [TaxId: 5755]}
Length = 125
Score = 24.4 bits (53), Expect = 6.0
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 58 IQERFVRG-SGPGGQAVAKTNNCVVLTHIPTGI 89
+R + G G G KT+ +++ I
Sbjct: 72 ADDRSIYGKKGSSGVITVKTSKAILVGVYNEKI 104
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 24.0 bits (52), Expect = 6.6
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 60 ERFVRG-SGPGGQAVAKTNNCVVLTHIPTGI 89
+R + G G +T V++ H P +
Sbjct: 74 DRSIYGRHDAEGVVCVRTKQTVIIAHYPPTV 104
>d1hqia_ d.137.1.1 (A:) Phenol hydroxylase P2 protein {Pseudomonas
sp., CF600 [TaxId: 306]}
Length = 90
Score = 23.5 bits (51), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 72 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQ 117
A+ + N V+ H P +I+ + L R+T E L WDVQ
Sbjct: 21 AIIQDNPHAVVQHHPA--MIRIEAEKRLEIRRETVEENLGRAWDVQ 64
>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human
(Homo sapiens), isoform II [TaxId: 9606]}
Length = 138
Score = 24.1 bits (52), Expect = 7.8
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 46 IYSTIPKIDEKDIQER--FVRGSGPGGQAVAKTNNCVVLTHIPTGI 89
I ++ + + R G AV + +V+ G+
Sbjct: 73 IRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGV 118
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 24.4 bits (53), Expect = 9.4
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 104 KTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRA 137
+ +++ + V+++ E + + + I+E+R
Sbjct: 595 SSVKDITGGYFIVELDPETAADKLLAAINERRAG 628
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 595,732
Number of extensions: 25763
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 22
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)