BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2493
(62 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|B Chain B, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|C Chain C, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|D Chain D, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|E Chain E, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|F Chain F, Annexin Xii E105k Homohexamer Crystal Structure
Length = 315
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ V ++ AY A+RL +AM G+GT+D+TLIRI+V+RSEIDL +IK+ + MY +L E
Sbjct: 237 IVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEF 296
Query: 61 I 61
I
Sbjct: 297 I 297
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 5 VRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
+R +LA++L AM G+GT+ LI I+ T+S + IK + +Y+ LE+ I
Sbjct: 82 LRKPDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEI 138
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G+GT+++++ I+ TRS IK DY ++ LE+ +K
Sbjct: 18 AETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELK 67
>pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|B Chain B, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|C Chain C, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|D Chain D, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|E Chain E, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|F Chain F, Crystal Structure Of The Annexin Xii Hexamer
Length = 315
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ V ++ AY A+RL +AM G+GT+D+TLIRI+V+RSEIDL +IK+ + MY +L E
Sbjct: 237 IVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEF 296
Query: 61 I 61
I
Sbjct: 297 I 297
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 2 IRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
+ +R +LA++L AM G+GT++ LI I+ T+S + IK + +Y+ LE+ I
Sbjct: 79 LALLRKPDEFLAEQLHAAMKGLGTDENALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEI 138
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G+GT+++++ I+ TRS IK DY ++ LE+ +K
Sbjct: 18 AETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELK 67
>pdb|1ANN|A Chain A, Annexin Iv
Length = 318
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 49/62 (79%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R+KSAY A+RL +M G+GT+D TLIR++V+R+EID+ DI+ ++ ++Y +L
Sbjct: 238 IVKCMRNKSAYFAERLYKSMKGLGTDDDTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSF 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
Y Q L AM G GT++ LI I+ +R+ ++ I Q Y Y +LE+ I+
Sbjct: 89 YDVQELRKAMKGAGTDEGCLIEILASRTPEEIRRINQTYQLQYGRSLEDDIR 140
>pdb|1I4A|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant T6d
Of Annexin Iv
Length = 318
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 49/62 (79%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R+KSAY A+RL +M G+GT+D TLIR++V+R+EID+ DI+ ++ ++Y +L
Sbjct: 238 IVKCMRNKSAYFAERLYKSMKGLGTDDDTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSF 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
Y Q L AM G GT++ LI I+ +R+ ++ I Q Y Y +LE+ I+
Sbjct: 89 YDVQELRKAMKGAGTDEGCLIEILASRTPEEIRRINQTYQLQYGRSLEDDIR 140
>pdb|1AOW|A Chain A, Annexin Iv
Length = 309
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 49/62 (79%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R+KSAY A+RL +M G+GT+D TLIR++V+R+EID+ DI+ ++ ++Y +L
Sbjct: 229 IVKCMRNKSAYFAERLYKSMKGLGTDDDTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSF 288
Query: 61 IK 62
IK
Sbjct: 289 IK 290
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
Y Q + AM G GT++ LI I+ +R+ ++ I Q Y Y +LE+ I+
Sbjct: 80 YDVQEVRKAMKGAGTDEGCLIEILASRTPEEIRRINQTYQLQYGRSLEDDIR 131
>pdb|2ZHI|A Chain A, Crystal Structure Analysis Of The Sodium-Bound Annexin A4
At 1.58 A Resolution
pdb|2ZHJ|A Chain A, Crystal Structure Analysis Of The Sodium-Bound Annexin A4
At 1.34 A Resolution
Length = 322
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 48/62 (77%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R+K AY A+RL +M G+GT+D TLIR++V+R+EID+ DI+ ++ ++Y +L
Sbjct: 242 IVKCMRNKPAYFAERLYKSMKGLGTDDSTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSF 301
Query: 61 IK 62
IK
Sbjct: 302 IK 303
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
Y Q L AM G GT++ LI I+ +R+ ++ I Q Y + Y +LEE I
Sbjct: 93 YDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDI 143
>pdb|2ZOC|A Chain A, Crystal Structure Of Recombinant Human Annexin Iv
pdb|2ZOC|B Chain B, Crystal Structure Of Recombinant Human Annexin Iv
Length = 319
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 48/62 (77%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R+KSAY A++L +M G+GT+D TLIR++V+R+EID+ DI+ + ++Y +L
Sbjct: 239 IVKCMRNKSAYFAEKLYKSMKGLGTDDNTLIRVMVSRAEIDMLDIRAHFKRLYGKSLYSF 298
Query: 61 IK 62
IK
Sbjct: 299 IK 300
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
Y Q L AM G GT++ LI I+ +R+ ++ I Q Y + Y +LE+ I+
Sbjct: 90 YDVQELRRAMKGAGTDEGCLIEILASRTPEEIRRISQTYQQQYGRSLEDDIR 141
>pdb|1AIN|A Chain A, Crystal Structure Of Human Annexin I At 2.5 Angstroms
Resolution
Length = 314
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C K A+ A++L AM G+GT + LIRI+V+RSEID+ DIK Y KMY +L +
Sbjct: 235 IVKCATSKPAFFAEKLHQAMKGVGTRHKALIRIMVSRSEIDMNDIKAFYQKMYGISLCQA 294
Query: 61 I 61
I
Sbjct: 295 I 295
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDY 49
++ ++ + + A L AM G+GT++ TLI I+ +R+ ++ DI + Y
Sbjct: 76 VLALLKTPAQFDADELRAAMKGLGTDEDTLIEILASRTNKEIRDINRVY 124
>pdb|1AVC|A Chain A, Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R + Y A+RL AM G+GT D TLIRI+V+RSE+D+ DI++ + YE +L
Sbjct: 245 VVKCIRSTAEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSM 304
Query: 61 IK 62
IK
Sbjct: 305 IK 306
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 46/62 (74%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ V++K + A +L +M G GT ++TL RI+V+RSEIDL +I++++++ Y+ +L +
Sbjct: 593 IVQSVKNKPLFFADKLYKSMKGAGTEEKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQA 652
Query: 61 IK 62
I+
Sbjct: 653 IE 654
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 9 SAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
+ Y A++L+ AM G GT+++ LI I+ TR+ ++ I + Y + Y TLE+ +
Sbjct: 437 AHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIQAINKAYKEDYHKTLEDAL 489
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY 53
A+ L NAM G G++ +I +I +RS +I Q+Y +Y
Sbjct: 26 AETLYNAMKGFGSDKEAIINLITSRSNKQRQEICQNYKSLY 66
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
A+ +++A++G+GT+++ LI I+ +R+ + + Y YE LE I
Sbjct: 98 AKEIKDAISGIGTDEKCLIEILASRTNEQIHQLVAAYKDAYERDLEADI 146
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY 53
A+ L AM G+GT++ T+I II RS I+Q + +
Sbjct: 369 AKALRKAMKGLGTDEDTIIDIITHRSNAQRQQIRQTFKSHF 409
>pdb|1AXN|A Chain A, The High Resolution Structure Of Annexin Iii Shows
Differences With Annexin V
Length = 323
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ CVR+ A+LA+RL A+ G+GT++ TL RI+V+RSEIDL DI+ ++ K Y +L
Sbjct: 243 IVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLYSA 302
Query: 61 IK 62
IK
Sbjct: 303 IK 304
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
M+ V + + A++L+ +M G GTN+ LI I+ TR+ + DI Q Y +Y+ +L +
Sbjct: 84 MVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDD 143
Query: 61 I 61
I
Sbjct: 144 I 144
>pdb|1AII|A Chain A, Annexin Iii
Length = 323
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ CVR+ A+LA+RL A+ G+GT++ TL RI+V+RSEIDL DI+ ++ K Y +L
Sbjct: 243 IVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLYSA 302
Query: 61 IK 62
IK
Sbjct: 303 IK 304
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
M+ V + + A++L+ +M G GTN+ LI I+ TR+ + DI Q Y +Y+ +L +
Sbjct: 84 MVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDD 143
Query: 61 I 61
I
Sbjct: 144 I 144
>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
T356d Of Annexin Vi
Length = 672
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R Y A+RL AM G+GT D TLIRI+V+RSE+D+ DI++ + YE +L
Sbjct: 244 VVKCIRSTPEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSM 303
Query: 61 IK 62
IK
Sbjct: 304 IK 305
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 47/62 (75%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ V++K + A +L +M G GT+D+TL RI+V+RSEIDL +I++++++ Y+ +L +
Sbjct: 592 IVQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQA 651
Query: 61 IK 62
I+
Sbjct: 652 IE 653
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 9 SAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
+ Y A++L+ AM G GT+++ LI I+ TR+ ++ I + Y + Y +LE+ +
Sbjct: 436 AHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDAL 488
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
A+ +++A++G+GT+++ LI I+ +R+ + + Y YE LE I
Sbjct: 97 AKEIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYERDLEADI 145
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY 53
A+ L AM G+GT++ T+I II RS + I+Q + +
Sbjct: 368 AKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHF 408
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY 53
A+ L AM G G++ ++ II +RS ++ Q Y +Y
Sbjct: 25 AEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSYKSLY 65
>pdb|2H0M|A Chain A, Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|2RAN|A Chain A, Rat Annexin V Crystal Structure: Ca2+-Induced
Conformational Changes
Length = 316
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 237 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 296
Query: 61 IK 62
IK
Sbjct: 297 IK 298
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 78 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 137
Query: 61 I 61
+
Sbjct: 138 V 138
>pdb|2H0L|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 237 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 296
Query: 61 IK 62
IK
Sbjct: 297 IK 298
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 78 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 137
Query: 61 I 61
+
Sbjct: 138 V 138
>pdb|2H0K|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
pdb|2H0K|B Chain B, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 237 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 296
Query: 61 IK 62
IK
Sbjct: 297 IK 298
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 78 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 137
Query: 61 I 61
+
Sbjct: 138 V 138
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|2IE6|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Xenon
pdb|2IE7|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Nitrous Oxide
Length = 318
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 237 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 296
Query: 61 IK 62
IK
Sbjct: 297 IK 298
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 78 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 137
Query: 61 I 61
+
Sbjct: 138 V 138
>pdb|1A8A|A Chain A, Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B|A Chain A, Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 319
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1BCZ|A Chain A, Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1BCW|A Chain A, Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1BCY|A Chain A, Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1N41|A Chain A, Crystal Structure Of Annexin V K27e Mutant
Length = 319
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1N44|A Chain A, Crystal Structure Of Annexin V R23e Mutant
Length = 319
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1BC0|A Chain A, Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1N42|A Chain A, Crystal Structure Of Annexin V R149e Mutant
Length = 319
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1BC1|A Chain A, Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k,
S228k, S303k)
Length = 319
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
pdb|1MCX|A Chain A, Structure Of Full-Length Annexin A1 In The Presence Of
Calcium
Length = 346
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C K + A++L AM G+GT +TLIRI+V+RSEID+ DIK Y K+Y +L +
Sbjct: 267 VVKCATSKPMFFAEKLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQKLYGISLCQA 326
Query: 61 I 61
I
Sbjct: 327 I 327
>pdb|1BC3|A Chain A, Recombinant Rat Annexin V, Triple Mutant (T72k, S144k,
S228k)
Length = 319
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR+IV+RSEIDL +I++++ K + T+L
Sbjct: 238 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSM 297
Query: 61 IK 62
IK
Sbjct: 298 IK 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GT+++ L II +R+ +L IKQ Y + Y + LE+
Sbjct: 79 IVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDD 138
Query: 61 I 61
+
Sbjct: 139 V 139
>pdb|1ANW|A Chain A, The Effect Of Metal Binding On The Structure Of Annexin V
And Implications For Membrane Binding
pdb|1ANW|B Chain B, The Effect Of Metal Binding On The Structure Of Annexin V
And Implications For Membrane Binding
pdb|1ANX|A Chain A, The Crystal Structure Of A New High-Calcium Form Of
Annexin V
pdb|1ANX|B Chain B, The Crystal Structure Of A New High-Calcium Form Of
Annexin V
pdb|1ANX|C Chain C, The Crystal Structure Of A New High-Calcium Form Of
Annexin V
Length = 319
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR++V+RSEIDL +I++++ K + T+L
Sbjct: 239 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSM 298
Query: 61 IK 62
IK
Sbjct: 299 IK 300
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GTN++ L II +R+ +L IKQ Y + Y ++LE+
Sbjct: 80 IVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDD 139
Query: 61 I 61
+
Sbjct: 140 V 140
>pdb|1HVF|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
Length = 319
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR++V+RSEIDL +I++++ K + T+L
Sbjct: 239 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSM 298
Query: 61 IK 62
IK
Sbjct: 299 IK 300
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GTN++ L II +R+ +L IKQ Y + Y ++LE+
Sbjct: 80 IVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDD 139
Query: 61 I 61
+
Sbjct: 140 V 140
>pdb|1HVE|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
pdb|1HVG|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
Length = 319
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR++V+RSEIDL +I++++ K + T+L
Sbjct: 239 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSM 298
Query: 61 IK 62
IK
Sbjct: 299 IK 300
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GTN++ L II +R+ +L IKQ Y + Y ++LE+
Sbjct: 80 IVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDD 139
Query: 61 I 61
+
Sbjct: 140 V 140
>pdb|1HVD|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
Length = 319
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR++V+RSEIDL +I++++ K + T+L
Sbjct: 239 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSM 298
Query: 61 IK 62
IK
Sbjct: 299 IK 300
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GTN++ L II +R+ +L IKQ Y + Y ++LE+
Sbjct: 80 IVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDD 139
Query: 61 I 61
+
Sbjct: 140 V 140
>pdb|1AVH|A Chain A, Crystal And Molecular Structure Of Human Annexin V After
Refinement. Implications For Structure, Membrane Binding
And Ion Channel Formation Of The Annexin Family Of
Proteins
pdb|1AVH|B Chain B, Crystal And Molecular Structure Of Human Annexin V After
Refinement. Implications For Structure, Membrane Binding
And Ion Channel Formation Of The Annexin Family Of
Proteins
pdb|1HAK|B Chain B, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1HAK|A Chain A, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1AVR|A Chain A, Crystal And Molecular Structure Of Human Annexin V After
Refinement. Implications For Structure, Membrane Binding
And Ion Channel Formation Of The Annexin Family Of
Proteins
Length = 320
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR++V+RSEIDL +I++++ K + T+L
Sbjct: 240 VVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSM 299
Query: 61 IK 62
IK
Sbjct: 300 IK 301
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ Y A L++A+ G GTN++ L II +R+ +L IKQ Y + Y ++LE+
Sbjct: 81 IVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDD 140
Query: 61 I 61
+
Sbjct: 141 V 141
>pdb|1SAV|A Chain A, Human Annexin V With Proline Substitution By Thioproline
Length = 320
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L AM G GT+D TLIR++V+RSEIDL +I++++ K + T+L
Sbjct: 240 VVKSIRSIXAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSM 299
Query: 61 IK 62
IK
Sbjct: 300 IK 301
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
Y A L++A+ G GTN++ L II +R+ +L IKQ Y + Y ++LE+ +
Sbjct: 91 YDAYELKHALKGAGTNEKVLTEIIASRTXEELRAIKQVYEEEYGSSLEDDV 141
>pdb|1YII|A Chain A, Crystal Structures Of Chicken Annexin V In Complex With
Ca2+
pdb|1YJ0|A Chain A, Crystal Structures Of Chicken Annexin V In Complex With
Zn2+
Length = 320
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R AY A+ L +M G GT+D TLIR++V+RSEIDL DI+ ++ K + +L +
Sbjct: 239 VVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQM 298
Query: 61 IK 62
I+
Sbjct: 299 IQ 300
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
M+ +R + A L++A+ G GTN++ L I+ +R+ ++ +IKQ Y++ YE LE++
Sbjct: 80 MVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDK 139
Query: 61 I 61
I
Sbjct: 140 I 140
>pdb|1ALA|A Chain A, Structure Of Chicken Annexin V At 2.25-Angstroms
Resolution
Length = 321
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R AY A+ L +M G GT+D TLIR++V+RSEIDL DI+ ++ K + +L +
Sbjct: 240 VVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQM 299
Query: 61 IK 62
I+
Sbjct: 300 IQ 301
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
M+ +R + A L++A+ G GTN++ L I+ +R+ ++ +IKQ Y++ YE LE++
Sbjct: 81 MVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDK 140
Query: 61 I 61
I
Sbjct: 141 I 141
>pdb|1W3W|A Chain A, The 2.1 Angstroem Resolution Structure Of Annexin A8
Length = 327
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C ++ +Y A+RL AM G GT D TLIR IV+RSEIDL IK + KMY TL
Sbjct: 247 VVKCTQNLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSM 306
Query: 61 I 61
I
Sbjct: 307 I 307
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
Y A+ L +AM G+GT + +I I+ +R++ L +I + Y + Y ++LEE I+
Sbjct: 97 YEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQ 148
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G+GTN++ +I ++ RS I + + + L E +K
Sbjct: 27 AETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLK 76
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 24 GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
GT++ I I+ TRS L + ++Y K+ ++E+ IK
Sbjct: 195 GTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIK 233
>pdb|1W45|A Chain A, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus.
pdb|1W45|B Chain B, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus
Length = 327
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C ++ +Y A+RL AM G GT D TLIR IV+RSEIDL IK + KMY TL
Sbjct: 247 VVKCTQNLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSM 306
Query: 61 I 61
I
Sbjct: 307 I 307
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
Y A+ L +AM G+GT + +I I+ +R++ L +I + Y + Y ++LEE I+
Sbjct: 97 YEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQ 148
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G+GTN++ +I ++ RS I + + + L E +K
Sbjct: 27 AETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLK 76
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 24 GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
GT++ I I+ TRS L + ++Y K+ ++E+ IK
Sbjct: 195 GTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIK 233
>pdb|2XO2|A Chain A, Human Annexin V With Incorporated Methionine Analogue
Azidohomoalanine
pdb|2XO3|A Chain A, Human Annexin V With Incorporated Methionine Analogue
Homopropargylglycine
Length = 320
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ +R AYLA+ L A G GT+D TLIR+ V+RSEIDL +I++++ K + T+L
Sbjct: 240 VVKSIRSIPAYLAETLYYAXKGAGTDDHTLIRVXVSRSEIDLFNIRKEFRKNFATSLYSX 299
Query: 61 IK 62
IK
Sbjct: 300 IK 301
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
Y A L++A+ G GTN++ L II +R+ +L IKQ Y + Y ++LE+ +
Sbjct: 91 YDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDV 141
>pdb|1W7B|A Chain A, Annexin A2: Does It Induce Membrane Aggregation By A New
Multimeric State Of The Protein
Length = 339
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTL 57
+++C+++K Y A RL ++M G GT D+ LIRI+V+RSE+D+ I+ ++ + Y +L
Sbjct: 259 LVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSL 315
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 5 VRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
++ + Y A L+ +M G+GT++ +LI II +R+ +L +I + Y +MY+T LE+ I
Sbjct: 103 LKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDI 159
>pdb|1XJL|A Chain A, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
pdb|1XJL|B Chain B, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
Length = 319
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTL 57
+++C+++K Y A RL ++M G GT D+ LIRI+V+RSE+D+ I+ ++ + Y +L
Sbjct: 239 LVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSL 295
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 5 VRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
++ + Y A L+ +M G+GT++ +LI II +R+ +L +I + Y +MY+T LE+ I
Sbjct: 83 LKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDI 139
>pdb|2HYU|A Chain A, Human Annexin A2 With Heparin Tetrasaccharide Bound
pdb|2HYV|A Chain A, Human Annexin A2 With Heparin Hexasaccharide Bound
pdb|2HYW|A Chain A, Human Annexin A2 With Calcium Bound
pdb|2HYW|B Chain B, Human Annexin A2 With Calcium Bound
Length = 308
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTL 57
+++C+++K Y A RL ++M G GT D+ LIRI+V+RSE+D+ I+ ++ + Y +L
Sbjct: 228 LVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSL 284
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 5 VRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
++ + Y A L+ +M G+GT++ +LI II +R+ +L +I + Y +MY+T LE+ I
Sbjct: 72 LKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDI 128
>pdb|1YCN|A Chain A, X-Ray Structure Of Annexin From Arabidopsis Thaliana Gene
At1g35720
pdb|1YCN|B Chain B, X-Ray Structure Of Annexin From Arabidopsis Thaliana Gene
At1g35720
pdb|2Q4C|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Annexin From Arabidopsis Thaliana Gene At1g35720
pdb|2Q4C|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Annexin From Arabidopsis Thaliana Gene At1g35720
Length = 317
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 2 IRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
I+C+ Y L +A+ GT++ L RI+ TR+EIDL I ++Y + LE+ I
Sbjct: 237 IQCLTRPELYFVDVLRSAINKTGTDEGALTRIVTTRAEIDLKVIGEEYQRRNSIPLEKAI 296
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY 53
A++L A G GTN+ +I I+ RS I+Q Y + Y
Sbjct: 17 AEQLRTAFEGWGTNEDLIISILAHRSAEQRKVIRQAYHETY 57
>pdb|1DK5|A Chain A, Crystal Structure Of Annexin 24(Ca32) From Capsicum Annuum
pdb|1DK5|B Chain B, Crystal Structure Of Annexin 24(Ca32) From Capsicum Annuum
Length = 322
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLK 51
Y + L +A+ GT + L R+I TR+E+DL I +Y K
Sbjct: 251 YFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKIIADEYQK 291
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 14 QRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY 53
++L +A G GTN++ +I I+ R+ I+Q Y + +
Sbjct: 26 EQLRSAFKGWGTNEKLIISILAHRTAAQRKLIRQTYAETF 65
>pdb|1N00|A Chain A, Annexin Gh1 From Cotton
Length = 321
Score = 32.0 bits (71), Expect = 0.098, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 2 IRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
++C+ Y + L A+ GT++ L R++ TR+E+DL I +Y + L I
Sbjct: 241 VKCLVYPEKYFEKVLRLAINRRGTDEGALTRVVCTRAEVDLKVIADEYQRRNSVPLTRAI 300
>pdb|3BRX|A Chain A, Crystal Structure Of Calcium-Bound Cotton Annexin Gh1
Length = 317
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 2 IRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
++C+ Y + L A+ GT++ L R++ TR+E+DL I +Y + L I
Sbjct: 237 VKCLVYPEKYFEKVLRLAINRRGTDEGALTRVVCTRAEVDLKVIADEYQRRNSVPLTRAI 296
>pdb|3CHJ|A Chain A, Crystal Structure Of Alpha-14 Giardin
pdb|3CHK|A Chain A, Calcium Bound Structure Of Alpha-14 Giardin
pdb|3CHL|A Chain A, Crystal Structure Of Alpha-14 Giardin With Magnesium Bound
Length = 337
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 34/57 (59%)
Query: 6 RDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
+ ++ L + + A G GT+++ L+ +++T ++ +I+Q Y ++Y +L + ++
Sbjct: 80 KPRAQLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVVR 136
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 28 RTLIRIIVTRSEIDLGDIKQDYLKMYET-TLEERIK 62
RTL + I+ ++E+ GD+ D+ K +E T+ E IK
Sbjct: 298 RTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,582,124
Number of Sequences: 62578
Number of extensions: 44264
Number of successful extensions: 279
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 146
length of query: 62
length of database: 14,973,337
effective HSP length: 33
effective length of query: 29
effective length of database: 12,908,263
effective search space: 374339627
effective search space used: 374339627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)