RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2493
         (62 letters)



>gnl|CDD|201070 pfam00191, Annexin, Annexin.  This family of annexins also
          includes giardin that has been shown to function as an
          annexin.
          Length = 66

 Score = 61.7 bits (151), Expect = 5e-15
 Identities = 25/52 (48%), Positives = 34/52 (65%)

Query: 11 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
          Y A+ L  AM G+GT++ TLIRI+ TRS   L  I++ Y K+Y   LE+ IK
Sbjct: 1  YDAELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIK 52


>gnl|CDD|197661 smart00335, ANX, Annexin repeats. 
          Length = 53

 Score = 50.1 bits (121), Expect = 1e-10
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 24 GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
          GT+++TLI I+ +RS   L  IKQ Y K Y   LE+ IK
Sbjct: 1  GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIK 39


>gnl|CDD|218200 pfam04666, Glyco_transf_54, N-Acetylglucosaminyltransferase-IV
           (GnT-IV) conserved region.  The complex-type of
           oligosaccharides are synthesised through elongation by
           glycosyltransferases after trimming of the precursor
           oligosaccharides transferred to proteins in the
           endoplasmic reticulum. N-Acetylglucosaminyltransferases
           (GnTs) take part in the formation of branches in the
           biosynthesis of complex-type sugar chains. In
           vertebrates, six GnTs, designated as GnT-I to -VI, which
           catalyze the transfer of GlcNAc to the core mannose
           residues of Asn-linked sugar chains, have been
           identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer
           of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of
           core oligosaccharide [Gn2(22)core oligosaccharide] and
           forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core
           oligosaccharide (Gn3(2,4,2)core oligosaccharide). In
           some members the conserved region occupies all but the
           very for N-terminal, where there is a signal sequence on
           all members. For other members the conserved region does
           not occupy the entire protein but is still to the
           N-terminus of the protein.
          Length = 301

 Score = 28.5 bits (64), Expect = 0.13
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 6   RDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQ 47
           R K +YL   L++ ++GM   +   + ++V  ++ D   +KQ
Sbjct: 67  RSKQSYLLDTLQSLISGMSEEELEDMVVVVFVADTDPDYVKQ 108


>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed.
          Length = 679

 Score = 25.2 bits (56), Expect = 2.5
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 18/57 (31%)

Query: 20  MAGMGTNDRT------LIRII-VTRSEID--------LGDIKQDYL---KMYETTLE 58
           M G  T DRT      L++ + VT  EID        L DI   +     +Y+ T E
Sbjct: 400 MPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHPFARGEPVYDVTFE 456


>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase/S1 RNA-binding domain protein; Reviewed.
          Length = 647

 Score = 24.9 bits (55), Expect = 2.6
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 1   MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
            +  V D S Y  Q LE  +       R   +++++R  I    ++++  K  E T    
Sbjct: 422 ELGYVEDLSEYKGQELEVKIIEFNRKRRK--KVVLSRKAI----LEEEKEKKKEETWNSL 475


>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 24.7 bits (54), Expect = 3.5
 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 12/46 (26%)

Query: 9    SAYLAQRLENAM------AGMG---TNDRTLIRIIVTRSEIDLGDI 45
            S Y A+RL +AM      A M    TN   L RII  R   DLGDI
Sbjct: 981  SLYAAKRLHDAMLGSILRAPMSFFHTN--PLGRII-NRFAKDLGDI 1023


>gnl|CDD|163462 TIGR03750, conj_TIGR03750, conjugative transfer region protein,
           TIGR03750 family.  Members of this protein family are
           found occasionally on plasmids. Usually, however, they
           are found on the bacterial main chromosome in regions
           flanked by markers of conjugative transfer and/or
           transposition [Mobile and extrachromosomal element
           functions, Plasmid functions].
          Length = 111

 Score = 24.1 bits (53), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 10  AYLAQRLENAMAGMGTNDRTLIR 32
            YL ++LE  +A +G     LI 
Sbjct: 80  GYLYRKLEWKLARLGLGRHRLIL 102


>gnl|CDD|234687 PRK00208, thiG, thiazole synthase; Reviewed.
          Length = 250

 Score = 23.9 bits (53), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 12/42 (28%)

Query: 11  YLAQRLENA-----M-------AGMGTNDRTLIRIIVTRSEI 40
            LA+RLE A     M       +G+G  +   +RII+ ++++
Sbjct: 135 VLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADV 176


>gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme
           that is involved in the formation of the thiazole moiety
           of thiamin pyrophosphate, an essential ubiquitous
           cofactor that plays an important role in carbohydrate
           and amino acid metabolism. ThiG catalyzes the formation
           of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP)
           and dehydroglycine, with the help of the sulfur carrier
           protein ThiS that carries the sulfur needed for thiazole
           assembly on its carboxy terminus (ThiS-COSH).
          Length = 248

 Score = 23.6 bits (52), Expect = 7.9
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 12/42 (28%)

Query: 11  YLAQRLENAMA------------GMGTNDRTLIRIIVTRSEI 40
            LA+RLE+A              G G  +   +RII+ R+++
Sbjct: 135 VLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADV 176


>gnl|CDD|236998 PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole
           synthase protein; Provisional.
          Length = 326

 Score = 23.6 bits (51), Expect = 8.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 14/52 (26%)

Query: 1   MIRCVRDKSAYLAQRLENAMA------------GMGTNDRTLIRIIVTRSEI 40
           M+ C  D  A  A+RLE+A A            G+G  +   IR+IV  + +
Sbjct: 201 MVYCSDDPIA--AKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATV 250


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.136    0.369 

Gapped
Lambda     K      H
   0.267   0.0891    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,099,550
Number of extensions: 219225
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 11
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (23.9 bits)