RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2493
(62 letters)
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 76.5 bits (188), Expect = 6e-19
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++C+ Y + L A+ GT++ L R++ TR+E+DL I +Y + L
Sbjct: 240 TVKCLVYPEKYFEKVLRLAINRRGTDEGALTRVVCTRAEVDLKVIADEYQRRNSVPLTRA 299
Query: 61 IK 62
I
Sbjct: 300 IV 301
Score = 51.5 bits (123), Expect = 7e-10
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ D + A A ++++ L+ I TRS L +Q Y Y+ +LEE
Sbjct: 82 VLLWALDPAERDALLANEATKRWTSSNQVLMEIACTRSANQLLHARQAYHARYKKSLEED 141
Query: 61 IK 62
+
Sbjct: 142 VA 143
Score = 48.0 bits (114), Expect = 1e-08
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
++L A +G GTN+ +I I+ R+ I++ Y + Y L + +
Sbjct: 22 CEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALD 71
Score = 37.6 bits (87), Expect = 5e-05
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
A+ L ++ +D +IR++ TRS+ + Y Y + + +
Sbjct: 177 AKLLHEKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEYGNDINKDL 225
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 75.8 bits (186), Expect = 1e-18
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ CVR+ A+LA+RL A+ G+GT++ TL RI+V+RSEIDL DI+ ++ K Y +L
Sbjct: 243 IVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLYSA 302
Query: 61 IK 62
IK
Sbjct: 303 IK 304
Score = 55.3 bits (133), Expect = 3e-11
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
M+ V + + A++L+ +M G GTN+ LI I+ TR+ + DI Q Y +Y+ +L +
Sbjct: 84 MVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDD 143
Query: 61 IK 62
I
Sbjct: 144 IS 145
Score = 47.6 bits (113), Expect = 1e-08
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ ++ A+ G+GT+++ LI I+ RS I ++Y Y L++ +K
Sbjct: 24 AEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLK 73
Score = 34.5 bits (79), Expect = 6e-04
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
AQ L A GT++ I+ RS L +Y + + + + IK
Sbjct: 179 AQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIK 229
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 74.1 bits (182), Expect = 4e-18
Identities = 5/62 (8%), Positives = 16/62 (25%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+ +A +A+ + +T DL + + ++
Sbjct: 225 AHYYNLAPARAVAYAFHSAVETQNDDMAYEQAARITGLFHDLHKFAWVHYACWGVMRDDI 284
Query: 61 IK 62
+
Sbjct: 285 LS 286
Score = 45.6 bits (108), Expect = 8e-08
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
M + ++ AM + R + +++ + + + Q Y + L +
Sbjct: 69 MALGWDCNISARVNVIKKAMKN-VNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQD 127
Query: 61 IK 62
Sbjct: 128 FV 129
Score = 43.3 bits (102), Expect = 5e-07
Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 3 RCVRDKSAYLAQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERI 61
R R A A+ L++ + + ++R+I+T + + +I + + +++E I
Sbjct: 150 RTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAI 209
Query: 62 K 62
+
Sbjct: 210 E 210
Score = 35.2 bits (81), Expect = 4e-04
Identities = 4/51 (7%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 12 LAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
++ + N+ L+ S + +++ + +K
Sbjct: 9 AIPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLK 57
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 73.8 bits (181), Expect = 5e-18
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+++K Y A RL ++M G GT D+ LIRI+V+RSE+D+ I+ ++ + Y +L
Sbjct: 228 LVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYY 287
Query: 61 IK 62
I+
Sbjct: 288 IQ 289
Score = 55.7 bits (134), Expect = 2e-11
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ ++ + Y A L+ +M G+GT++ +LI II +R+ +L +I + Y +MY+T LE+
Sbjct: 68 ILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKD 127
Query: 61 IK 62
I
Sbjct: 128 II 129
Score = 50.3 bits (120), Expect = 2e-09
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A +E A+ G ++ T++ I+ RS DI Y + + L +K
Sbjct: 8 ALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALK 57
Score = 35.3 bits (81), Expect = 3e-04
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L +A GT+ I I+ RS L + Y + E I+
Sbjct: 164 ARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIR 214
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 74.3 bits (182), Expect = 6e-18
Identities = 24/62 (38%), Positives = 47/62 (75%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ V++K + A +L +M G GT+D+TL RI+V+RSEIDL +I++++++ Y+ +L +
Sbjct: 592 IVQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQA 651
Query: 61 IK 62
I+
Sbjct: 652 IE 653
Score = 72.0 bits (176), Expect = 3e-17
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R Y A+RL AM G+GT D TLIRI+V+RSE+D+ DI++ + YE +L
Sbjct: 244 VVKCIRSTPEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSM 303
Query: 61 IK 62
IK
Sbjct: 304 IK 305
Score = 57.7 bits (139), Expect = 4e-12
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ + + Y A++L+ AM G GT+++ LI I+ TR+ ++ I + Y + Y +LE+
Sbjct: 428 ILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDA 487
Query: 61 IK 62
+
Sbjct: 488 LS 489
Score = 55.8 bits (134), Expect = 2e-11
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ +R + A+ +++A++G+GT+++ LI I+ +R+ + + Y YE LE
Sbjct: 85 IVGLMRPPAYCDAKEIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYERDLEAD 144
Query: 61 IK 62
I
Sbjct: 145 II 146
Score = 49.3 bits (117), Expect = 4e-09
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G G++ ++ II +RS ++ Q Y +Y L +K
Sbjct: 25 AEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLK 74
Score = 46.6 bits (110), Expect = 4e-08
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G+GT++ T+I II RS + I+Q + + L +K
Sbjct: 368 AKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLK 417
Score = 36.9 bits (85), Expect = 8e-05
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
Q L A GT++ I I+ RS+ L + +YLK +E I+
Sbjct: 180 VQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIR 230
Score = 34.2 bits (78), Expect = 0.001
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
+ + +G + + + I+ TRS L + Q+++KM +E IK
Sbjct: 528 ILEIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIK 578
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 72.7 bits (178), Expect = 1e-17
Identities = 28/62 (45%), Positives = 48/62 (77%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R+K AY A+RL +M G+GT+D TLIR++V+R+EID+ DI+ ++ ++Y +L
Sbjct: 242 IVKCMRNKPAYFAERLYKSMKGLGTDDSTLIRVMVSRAEIDMLDIRANFKRLYGKSLYSF 301
Query: 61 IK 62
IK
Sbjct: 302 IK 303
Score = 57.3 bits (138), Expect = 5e-12
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ + Y Q L AM G GT++ LI I+ +R+ ++ I Q Y + Y +LEE
Sbjct: 83 ILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEED 142
Query: 61 IK 62
I
Sbjct: 143 IC 144
Score = 48.0 bits (114), Expect = 9e-09
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
AQ L AM G+GT++ +I ++ R+ +I+ Y L E +K
Sbjct: 23 AQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLK 72
Score = 35.7 bits (82), Expect = 3e-04
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
AQ L A GT++ + I+ +R+ L + +Y ++ + +E+ IK
Sbjct: 178 AQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIK 228
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 72.7 bits (178), Expect = 1e-17
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C+R AY A+ L +M G GT+D TLIR++V+RSEIDL DI+ ++ K + +L +
Sbjct: 239 VVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQM 298
Query: 61 IK 62
I+
Sbjct: 299 IQ 300
Score = 55.4 bits (133), Expect = 3e-11
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
M+ +R + A L++A+ G GTN++ L I+ +R+ ++ +IKQ Y++ YE LE++
Sbjct: 80 MVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDK 139
Query: 61 IK 62
I
Sbjct: 140 IT 141
Score = 48.4 bits (115), Expect = 8e-09
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM GMGT++ T+++I+ +R+ +I + ++ L + +K
Sbjct: 20 AEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLK 69
Score = 33.8 bits (77), Expect = 0.001
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
AQ L A GT++ T I I+ TRS L + Y+ + +EE I
Sbjct: 175 AQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETID 225
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 72.7 bits (178), Expect = 1e-17
Identities = 31/62 (50%), Positives = 47/62 (75%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++ V ++ AY A+RL +AM G+GT+D+TLIRI+V+RSEIDL +IK+ + MY +L E
Sbjct: 237 IVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEF 296
Query: 61 IK 62
I
Sbjct: 297 IA 298
Score = 56.1 bits (135), Expect = 1e-11
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+ +R +LA++L AM G+GT+ LI I+ T+S + IK + +Y+ LE+
Sbjct: 78 ALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKE 137
Query: 61 IK 62
I
Sbjct: 138 II 139
Score = 46.5 bits (110), Expect = 4e-08
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G+GT+++++ I+ TRS IK DY ++ LE+ +K
Sbjct: 18 AETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELK 67
Score = 35.3 bits (81), Expect = 4e-04
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A + A G +GT++ ++ TRS L I +Y K+ T+ + I+
Sbjct: 173 AAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIE 223
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Length = 327
Score = 72.3 bits (177), Expect = 2e-17
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C ++ +Y A+RL AM G GT D TLIR IV+RSEIDL IK + KMY TL
Sbjct: 247 VVKCTQNLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSM 306
Query: 61 IK 62
I
Sbjct: 307 IM 308
Score = 53.0 bits (127), Expect = 2e-10
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ + Y A+ L +AM G+GT + +I I+ +R++ L +I + Y + Y ++LEE
Sbjct: 87 IVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEED 146
Query: 61 IK 62
I+
Sbjct: 147 IQ 148
Score = 48.8 bits (116), Expect = 6e-09
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L AM G+GTN++ +I ++ RS I + + + L E +K
Sbjct: 27 AETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLK 76
Score = 37.3 bits (86), Expect = 8e-05
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 6 RDKSAYLAQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
+ AQ L A GT++ I I+ TRS L + ++Y K+ ++E+ IK
Sbjct: 176 PALALQDAQDLYAAGEKIRGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIK 233
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 71.6 bits (175), Expect = 4e-17
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+++C K + A++L AM G+GT +TLIRI+V+RSEID+ DIK Y K+Y +L +
Sbjct: 267 VVKCATSKPMFFAEKLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQKLYGISLCQA 326
Query: 61 IK 62
I
Sbjct: 327 IL 328
Score = 53.5 bits (128), Expect = 1e-10
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+ ++ + + A L AM G+GT++ TL I+ +R+ ++ +I + Y + + L +
Sbjct: 108 ALALLKTPAQFDADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKD 167
Query: 61 IK 62
I
Sbjct: 168 IT 169
Score = 48.1 bits (114), Expect = 1e-08
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
+ L A+ G ++ T+I I+ R+ IK YL+ L+E +K
Sbjct: 48 VEALHKAITVKGVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALK 97
Score = 38.4 bits (89), Expect = 3e-05
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 13 AQRLENAMAG-MGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
A+ L A GT+ I I+ TRS L + Q Y K + + + +
Sbjct: 203 ARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLD 253
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 69.3 bits (169), Expect = 2e-16
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
+ D A + A AG G++ L RI + K Y K+Y +ER
Sbjct: 236 AHDFLYDPCCAAAFSMNVAFAGSGSDSNRLNRITAMHFR-ECKGCKYYYKKVYGQAFDER 294
Query: 61 IK 62
Sbjct: 295 CA 296
Score = 55.0 bits (132), Expect = 4e-11
Identities = 12/62 (19%), Positives = 36/62 (58%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ + ++ L + + A G GT+++ L+ +++T ++ +I+Q Y ++Y +L +
Sbjct: 75 VLMLYKPRAQLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDV 134
Query: 61 IK 62
++
Sbjct: 135 VR 136
Score = 36.5 bits (84), Expect = 1e-04
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 7 DKSAYLAQRLENAMAGMGTN--DRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
S + ++ + LI I + L ++++ + + T L+ +K
Sbjct: 7 QMSTGVTAVVQKVVEACQDESKRLDLIEIARSYPPNQLRNMQRTFQAITGTFLDAFLK 64
Score = 26.9 bits (59), Expect = 0.34
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 7 DKSAYLAQRLENAMAGM---GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYE-TTLEERI 61
+ + A+ T IRI T + D + + Y Y +L +
Sbjct: 163 HELEEDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGV 221
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 50.2 bits (120), Expect = 2e-09
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEER 60
++ D+ AQ + +A++G + ++ + D + Y +M++ L E
Sbjct: 67 LMDLFSDRHEVRAQHIRDALSG-RNDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVED 125
Query: 61 IK 62
Sbjct: 126 FM 127
Score = 46.3 bits (110), Expect = 4e-08
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 2/51 (3%)
Query: 1 MIRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLK 51
+ A + A G R + RI + L K Y
Sbjct: 220 AHFALLGMHRLAAYLINCACNDKGDEKR-MRRITGMMVDKCL-GAKHAYKI 268
Score = 40.2 bits (94), Expect = 7e-06
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 13 AQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
AQRL A N LI T + I + + ++E+ I
Sbjct: 159 AQRL--DQAFDQKNTAYLIDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIA 206
Score = 37.9 bits (88), Expect = 4e-05
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 10 AYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 62
+A L+ A+ ++ + I S I + Y+ Y L + IK
Sbjct: 5 TDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIK 55
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 23.7 bits (52), Expect = 4.4
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 12/42 (28%)
Query: 11 YLAQRLENAMA------------GMGTNDRTLIRIIVTRSEI 40
LA++LE G G + + I+ ++++
Sbjct: 138 VLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKV 179
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 977
Score = 24.0 bits (52), Expect = 4.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 7 DKSAYLAQRLENAMAGMGTNDRTLIRIIVTRS 38
+ S LA L+ + TL+RI+ TR
Sbjct: 757 ESSKALADSLDRCVDPEDPYFNTLVRIMSTRC 788
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA
degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A
{Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5
b.40.4.5 b.40.4.16
Length = 760
Score = 23.5 bits (51), Expect = 5.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 7 DKSAYLAQRLENAMAGMGTNDRTLIRIIVTRS 38
+ S LA L+ + TL+RI+ TR
Sbjct: 540 ESSKALADSLDRCVDPEDPYFNTLVRIMSTRC 571
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 23.3 bits (51), Expect = 6.9
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 12/42 (28%)
Query: 11 YLAQRLENAMA------------GMGTNDRTLIRIIVTRSEI 40
+A++L G+G + +RII+ +++
Sbjct: 147 IIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKV 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.369
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 934,056
Number of extensions: 41133
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 58
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)