BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2494
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19079|CDD_BACSU Cytidine deaminase OS=Bacillus subtilis (strain 168) GN=cdd PE=1
SV=1
Length = 136
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 8/124 (6%)
Query: 17 QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
Q L +++ARD AY PYSK QVGAALL +D ++ GCN+ENA+Y M CAE+TA+ KA+
Sbjct: 4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKAV 63
Query: 77 SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD-RSQVGLIT 135
SEG T+F+ +AV+A P VSPCG+CRQVI+E C V++V ++ + Q+ +T
Sbjct: 64 SEGDTEFQMLAVAADTPGP---VSPCGACRQVISEL----CTKDVIVVLTNLQGQIKEMT 116
Query: 136 IDGM 139
++ +
Sbjct: 117 VEEL 120
>sp|P56389|CDD_MOUSE Cytidine deaminase OS=Mus musculus GN=Cda PE=1 SV=2
Length = 146
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 5/111 (4%)
Query: 17 QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
Q L S +A+ +AYCPYS+ VGAALL D IF+GCN+ENA Y + +CAE+TAI KAI
Sbjct: 16 QRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAI 75
Query: 77 SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
SEG F+ IA+S+ L +F+SPCG+CRQV+ EF + D V + K D
Sbjct: 76 SEGYKDFRAIAISSDL--QEEFISPCGACRQVMREFGT---DWAVYMTKPD 121
>sp|Q9S3M0|CDD_BACPY Cytidine deaminase OS=Bacillus psychrophilus GN=cdd PE=3 SV=1
Length = 136
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 17 QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
+ L S +AR+ AY PYSK VGAALL +D TI+ GCN+EN++Y MT CAE+TA KA+
Sbjct: 4 EKLIAESKKAREQAYVPYSKFPVGAALLAEDGTIYHGCNIENSAYSMTNCAERTAFFKAV 63
Query: 77 SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
S+G FK +AV A D+ VSPCG+CRQVIAEF + + + + +K D
Sbjct: 64 SDGVRSFKALAVVA---DTEGPVSPCGACRQVIAEFCNGSMPVYLTNLKGD 111
>sp|P32320|CDD_HUMAN Cytidine deaminase OS=Homo sapiens GN=CDA PE=1 SV=2
Length = 146
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 17 QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
Q L S +A+ +AYCPYS VGAALL Q+ IF GCN+ENA Y + ICAE+TAI KA+
Sbjct: 16 QQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAV 75
Query: 77 SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQV 131
SEG F+ IA+++ + D F+SPCG+CRQV+ EF + + V + K D + +
Sbjct: 76 SEGYKDFRAIAIASDMQDD--FISPCGACRQVMREFGT---NWPVYMTKPDGTYI 125
>sp|Q54I82|CDD_DICDI Probable cytidine deaminase OS=Dictyostelium discoideum GN=cda PE=3
SV=1
Length = 147
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 71/100 (71%), Gaps = 6/100 (6%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
A+CPYS ++GAALL IFTG NVEN+SYG+TICAE+TA +KA+SEG FK I V+
Sbjct: 20 AHCPYSHFRIGAALLTSCGKIFTGVNVENSSYGLTICAERTAYTKAVSEGYKSFKGIVVA 79
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRS 129
+ L D +F++PCG+CRQ EF D +V+ VK DRS
Sbjct: 80 SDLKD--RFITPCGACRQFGVEFG----DFEVVCVKPDRS 113
>sp|Q9KD53|CDD_BACHD Cytidine deaminase OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=cdd PE=3
SV=1
Length = 132
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 68/97 (70%), Gaps = 3/97 (3%)
Query: 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
Q L +IQAR+ AY PYS+ QVGAALL +D ++ G N+ENASYG+T CAE+TA+ KA
Sbjct: 3 RQMLIKEAIQAREGAYVPYSRFQVGAALLMKDGSVIRGANIENASYGLTNCAERTALFKA 62
Query: 76 ISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEF 112
SEG+ IAV A D+ + V PCG+CRQV+AE
Sbjct: 63 YSEGRRDVVAIAVVA---DTKRPVPPCGACRQVMAEL 96
>sp|Q09190|CDD_SCHPO Putative cytidine deaminase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pcd1 PE=3 SV=2
Length = 133
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 61/99 (61%), Gaps = 8/99 (8%)
Query: 30 AYCPYSKLQVGAALLCQD-DTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAV 88
+YCPYS VGA ++ D +T G NVENASYG ICAE+ AI+KA+S G TKF I V
Sbjct: 20 SYCPYSNFAVGACVVSDDKNTYIYGANVENASYGNCICAERVAITKAVSMGYTKFMAIGV 79
Query: 89 SAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
+ + V+PCG CRQVI EFS DI V + D
Sbjct: 80 MS----AKGRVTPCGICRQVIREFSK---DINVYMFHDD 111
>sp|P47718|CDD_MYCPI Cytidine deaminase OS=Mycoplasma pirum GN=cdd PE=3 SV=1
Length = 133
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Query: 29 NAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAV 88
NAY PYS +V + LL D F G N+EN++Y TICAE++A+S I+ G FK+I
Sbjct: 17 NAYVPYSNFRV-SCLLLTDGGWFAGVNIENSAYSPTICAERSAVSSMITSG---FKQIFK 72
Query: 89 SAILPDS--NKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDR 128
IL D+ +PCG CRQV++EF+ P I +K ++
Sbjct: 73 VYILTDTIVKDIGTPCGVCRQVLSEFAKPETPIITYNLKGEK 114
>sp|Q06549|CDD_YEAST Cytidine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=CDD1 PE=1 SV=1
Length = 142
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 17 QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
+ L +++A + +Y PYS +VG ++L +D IFTG NVENASY ICAE++A+ + +
Sbjct: 12 EALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVL 71
Query: 77 SEGQTKFKRIAVSAILPDS-NKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQV 131
G + V I DS ++ VSPCG CRQ I EF I +L RS+V
Sbjct: 72 MAGHRSGWKCMV--ICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKV 125
>sp|O53367|CDD_MYCTU Cytidine deaminase OS=Mycobacterium tuberculosis GN=cdd PE=1 SV=1
Length = 133
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 23 SIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTK 82
+ QA AY PYS+ VGAA L D + TGCNVEN SYG+T+CAE + S G
Sbjct: 13 ATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGG-- 70
Query: 83 FKRIAVSAILPDSNKFVSPCGSCRQVIAEFSS 114
R+ A + + PCG CRQV+ E
Sbjct: 71 -GRLLALACVDGHGSVLMPCGRCRQVLLEHGG 101
>sp|P47298|CDD_MYCGE Cytidine deaminase OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=cdd PE=3 SV=1
Length = 130
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
AY P+S +V ++ + T F G N+EN+S+ +T+CAE++AI+ ++ G K + V
Sbjct: 19 AYTPFSNFKVACMIIANNQTFF-GVNIENSSFPVTLCAERSAIASMVTSGHRKIDYVFV- 76
Query: 90 AILPDSNKFVSPCGSCRQVIAEFS 113
NK SPCG CRQ + EFS
Sbjct: 77 -YFNTKNKSNSPCGMCRQNLLEFS 99
>sp|P75051|CDD_MYCPN Cytidine deaminase OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=cdd PE=3 SV=1
Length = 133
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISK---AISEGQTKFK 84
++AY P+SK +V A +L ++ F G N+ENASY +T+CAE++AI+ +I + +
Sbjct: 17 NHAYTPFSKFKV-ACMLVANNQAFYGVNIENASYPVTLCAERSAIANMVTSIGKATIDYV 75
Query: 85 RIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRS 129
+ P + SPCG CRQ I EF++ Q+ ++ D+S
Sbjct: 76 FVYFDTKTPTN----SPCGMCRQNIFEFATD--KTQLFCIEKDKS 114
>sp|P33967|BSR_BACCE Blasticidin-S deaminase OS=Bacillus cereus GN=bsr PE=1 SV=1
Length = 140
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 12 LDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTA 71
L+ +E +++ DN K VGAA+ + I + ++E +T+CAE A
Sbjct: 11 LELVEVATEKITMLYEDN------KHHVGAAIRTKTGEIISAVHIEAYIGRVTVCAEAIA 64
Query: 72 ISKAISEGQTKFKRI-AVSAILPD----SNKFVSPCGSCRQVIAEFSSPAC 117
I A+S GQ F I AV D S + VSPCG CR++I+++ +P C
Sbjct: 65 IGSAVSNGQKDFDTIVAVRHPYSDEVDRSIRVVSPCGMCRELISDY-APDC 114
>sp|B7VPF1|CDD_VIBSL Cytidine deaminase OS=Vibrio splendidus (strain LGP32) GN=cdd PE=3
SV=1
Length = 295
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIA 87
+Y P S VGA + T++ G N+E A G T+ AE++AIS A +G+ I
Sbjct: 64 SYAPLSDFYVGAIVRGLSGTLYFGANLEIAGAQLGQTVHAEQSAISHAWMKGEQGISDIT 123
Query: 88 VSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDR 128
++ SPCG CRQ + E ++ A +++V + + D
Sbjct: 124 IN---------FSPCGHCRQFMNELTT-AKELKVQLPQRDE 154
>sp|Q7MK48|CDD_VIBVY Cytidine deaminase OS=Vibrio vulnificus (strain YJ016) GN=cdd PE=3
SV=2
Length = 295
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIA 87
+Y P S+ VGA + T++ G N+E G T+ AE++AIS A +G+ I
Sbjct: 64 SYAPISEFYVGAIVRGLSGTLYFGANMEFDGVQLGQTVHAEQSAISHAWMKGEQGLSDIT 123
Query: 88 VSAILPDSNKFVSPCGSCRQVIAEFSS 114
++ SPCG CRQ + E SS
Sbjct: 124 IN---------FSPCGHCRQFMNELSS 141
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 19 LANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISE 78
L +++A + ++ PY+ G AL + ++ G ENA++ ++ + A+ + +
Sbjct: 192 LMQRAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLA 251
Query: 79 GQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVL 122
G+ +F+ I SA L +S+K +C Q E +P + L
Sbjct: 252 GE-RFENIQ-SAALVESHKGKISHLACTQSTLEALNPDIPVSYL 293
>sp|Q87Q52|CDD_VIBPA Cytidine deaminase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=cdd PE=3 SV=1
Length = 295
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIA 87
+Y P S+ VGA + ++ G N+E G T+ AE++AIS A +G+ K I
Sbjct: 64 SYAPISEFYVGAIVRGLSGRLYFGANMEFFGVQLGQTVHAEQSAISHAWMKGEHGVKDIT 123
Query: 88 VSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDR 128
++ SPCG CRQ + E S+ A +++V + + D
Sbjct: 124 IN---------FSPCGHCRQFMNELST-AKELKVQLPERDE 154
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 23 SIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTK 82
+++A + ++ PY+ G AL + +F G ENA++ ++ + A+ + + G+T
Sbjct: 196 AVEAMNMSHAPYTNNLSGLALELANGRVFKGAYAENAAFNPSLPPLQVALIQVLLAGET- 254
Query: 83 FKRIAVSAILPDSNKFVSPCGSCRQVI 109
F I +A++ +S +S + +
Sbjct: 255 FDSIKAAALVENSEGKISHLADTQSTL 281
>sp|Q8DA31|CDD_VIBVU Cytidine deaminase OS=Vibrio vulnificus (strain CMCP6) GN=cdd PE=3
SV=2
Length = 295
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIA 87
+Y P S+ VGA + ++ G N+E G T+ AE++AIS A +G+ I
Sbjct: 64 SYAPISEFYVGAIVRGLSGALYFGANMEFDGVQLGQTVHAEQSAISHAWMKGEQGLSDIT 123
Query: 88 VSAILPDSNKFVSPCGSCRQVIAEFSS 114
++ SPCG CRQ + E SS
Sbjct: 124 IN---------FSPCGHCRQFMNELSS 141
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 19 LANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISE 78
L +++A + ++ PY+ G AL + ++ G ENA++ ++ + A+ + +
Sbjct: 192 LMQRAVEAMNRSHAPYTHNLSGVALQTESGRVYLGAYAENAAFNPSLPPLQVALIQLLLA 251
Query: 79 GQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVL 122
G+ +F+ I SA L +S+K +C Q E +P + L
Sbjct: 252 GE-RFENIQ-SAALVESHKGKISHLACTQSTLEALNPDIPVSYL 293
>sp|Q6LRI0|CDD_PHOPR Cytidine deaminase OS=Photobacterium profundum GN=cdd PE=3 SV=1
Length = 295
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P SK VGA + + ++ G N+E AS TI AE++AIS A +G+T I ++
Sbjct: 66 APISKFFVGAIVRGESGRLYFGANMEFVGASLSQTIHAEQSAISHAWIKGETGITDITIN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSS 114
SPCG CRQ + E ++
Sbjct: 126 ---------YSPCGHCRQFMNELTT 141
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 25 QARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASY 61
+A + ++ PY+K G AL D +FTG ENA++
Sbjct: 198 KAANGSHAPYTKNYSGVALKATDGKVFTGKYAENAAF 234
>sp|A7MVH6|CDD_VIBHB Cytidine deaminase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=cdd PE=3 SV=1
Length = 295
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIA 87
+Y P S+ VGA + ++ G N+E G T+ AE+ AIS A +G+ K I
Sbjct: 64 SYAPISEFYVGAIVRGLSGRLYFGANMEFFGVQLGQTVHAEQCAISHAWMKGEHGVKDIT 123
Query: 88 VSAILPDSNKFVSPCGSCRQVIAEFSS 114
++ SPCG CRQ + E S+
Sbjct: 124 IN---------YSPCGHCRQFMNELST 141
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 23 SIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTK 82
++ A + ++ PY+ G AL +F G ENA++ ++ + A+ + + G+ K
Sbjct: 196 AVNAMNISHAPYTNNLSGIALEMNSGLVFQGAYAENAAFNPSLPPLQVALIQILMAGE-K 254
Query: 83 FKRIAVSAILPDSNKFVSPCGSCRQVI 109
F+ I +A++ +S +S + +
Sbjct: 255 FEDIKAAALVENSQGKISHLADTQSTL 281
>sp|Q65RG8|CDD_MANSM Cytidine deaminase OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=cdd PE=3 SV=1
Length = 296
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 11 ALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAE 68
AL P+E L L + A A P S+ VGA + Q + + G N E AS T+ AE
Sbjct: 50 ALSPVEFALRCLPV-AACYALTPISQFNVGAIAIGQSGSFYFGANQEFVAASMQQTVHAE 108
Query: 69 KTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSS 114
++AIS A G+ + V+ +PCG CRQ + E +S
Sbjct: 109 QSAISHAWLAGEKAIAHMVVN---------YTPCGHCRQFMNELNS 145
>sp|C3LLS7|CDD_VIBCM Cytidine deaminase OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=cdd PE=3 SV=1
Length = 295
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 4 HDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVE--NASY 61
++ S L+ + +A L I A +Y P S+ VGA + ++ G N+E A
Sbjct: 39 QQLLTLSGLEDADLRVALLPIAAA-YSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQL 97
Query: 62 GMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSS 114
G T+ AE+ AIS A +G+ I ++ SPCG CRQ + E ++
Sbjct: 98 GQTVHAEQCAISHAWMKGEKGVADITIN---------FSPCGHCRQFMNELTT 141
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
++ L +++A + ++ PY++ G AL + I+ G ENA++ ++ + A+++A
Sbjct: 189 DEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQA 248
Query: 76 ISEGQTKFKRIAVSAILPDSNKFVS 100
+ G++ F+ I +A++ + +S
Sbjct: 249 MMMGES-FEDIEAAALVESATGKIS 272
>sp|Q9KSM5|CDD_VIBCH Cytidine deaminase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=cdd PE=1 SV=1
Length = 295
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 4 HDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVE--NASY 61
++ S L+ + +A L I A +Y P S+ VGA + ++ G N+E A
Sbjct: 39 QQLLTLSGLEDADLRVALLPIAAA-YSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQL 97
Query: 62 GMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSS 114
G T+ AE+ AIS A +G+ I ++ SPCG CRQ + E ++
Sbjct: 98 GQTVHAEQCAISHAWMKGEKGVADITIN---------FSPCGHCRQFMNELTT 141
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
++ L +++A + ++ PY++ G AL + I+ G ENA++ ++ + A+++A
Sbjct: 189 DEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQA 248
Query: 76 ISEGQTKFKRIAVSAILPDSNKFVS 100
+ G++ F+ I +A++ + +S
Sbjct: 249 MMMGES-FEDIEAAALVESATGKIS 272
>sp|Q5E4R6|CDD_VIBF1 Cytidine deaminase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=cdd PE=3 SV=1
Length = 297
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA ++ G N+E + G TI AE++AIS A +G+T I ++
Sbjct: 68 APISNFYVGAIARGLTGNLYFGANMEYNDVQLGQTIHAEQSAISHAWIQGETGISNITIN 127
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSS 114
SPCG CRQ + E ++
Sbjct: 128 ---------FSPCGHCRQFMNELTT 143
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 7 MEFSALDPIEQNLA--------NLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVEN 58
+E L P+ NLA +++A + ++ PYS G AL + ++ G EN
Sbjct: 174 IEGGLLAPLSHNLALETESPLLRKALEAANRSHAPYSHNLSGIALEMESGEVYYGMYAEN 233
Query: 59 ASYGMTICAEKTAISKA 75
A++ ++ + A+ A
Sbjct: 234 AAFNPSLPPLQVALVHA 250
>sp|A5F1V7|CDD_VIBC3 Cytidine deaminase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=cdd PE=3 SV=1
Length = 295
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIA 87
+Y P S+ VGA + ++ G N+E A G T+ AE+ AIS A +G+ I
Sbjct: 64 SYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVADIT 123
Query: 88 VSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVK 125
++ SPCG CRQ + E ++ A +++ + K
Sbjct: 124 IN---------FSPCGHCRQFMNELTT-ASSLKIQLPK 151
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
++ L +++A + ++ PY++ G AL + I+ G ENA++ ++ + A+++A
Sbjct: 189 DEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQA 248
Query: 76 ISEGQTKFKRIAVSAILPDSNKFVS 100
+ G++ F+ I +A++ + +S
Sbjct: 249 MMMGES-FEDIEAAALVESATGKIS 272
>sp|B5FEN2|CDD_VIBFM Cytidine deaminase OS=Vibrio fischeri (strain MJ11) GN=cdd PE=3
SV=1
Length = 297
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA ++ G N+E + G TI AE++AIS A +G+T I ++
Sbjct: 68 APISNFYVGAIARGLTGNLYFGANMEYNDVQLGQTIHAEQSAISHAWIQGETGISDITIN 127
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSS 114
SPCG CRQ + E ++
Sbjct: 128 ---------FSPCGHCRQFMNELTT 143
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 7 MEFSALDPIEQNLA--------NLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVEN 58
+E L P+ NLA +++A + ++ PYS G AL + ++ G EN
Sbjct: 174 IEGGLLAPLSHNLALETDSPLLRKALEAANRSHAPYSHNLSGIALEMESGEVYYGMYAEN 233
Query: 59 ASYGMTICAEKTAISKA 75
A++ ++ + A+ A
Sbjct: 234 AAFNPSLPPLQVALVHA 250
>sp|A4SNI2|CDD_AERS4 Cytidine deaminase OS=Aeromonas salmonicida (strain A449) GN=cdd
PE=3 SV=1
Length = 293
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVENASYGM--TICAEKTAISKAISEGQTKFKRIAVS 89
P SK VGA T + G N+E A G+ ++ AE++AIS A G+T I V+
Sbjct: 65 APISKFFVGAIACGLSGTWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVN 124
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSS 114
+PCG CRQ + E S+
Sbjct: 125 ---------YTPCGHCRQFMNELST 140
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 3 GHDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYG 62
HD + + DPI + ++ A +Y PYS+ ALL D +F G ENA++
Sbjct: 179 AHDELVLESEDPIWRA----ALAAARQSYAPYSQGYAAVALLFADGRLFCGRYAENAAFN 234
Query: 63 MTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVL 122
++ + A + A+ G+ I + +L N +S S + + S + Q +
Sbjct: 235 PSLPPMQMACAHAVLCGE-DLASIRRAVLLESKNGQISQRDSAQSTLKALGSVELEYQAV 293
>sp|B2VIF3|CDD_ERWT9 Cytidine deaminase OS=Erwinia tasmaniensis (strain DSM 17950 /
Et1/99) GN=cdd PE=3 SV=1
Length = 296
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIA 87
A P S VGA + T++ G N+E A+ T+ AE++A++ A G++ I
Sbjct: 64 AVAPLSDFNVGAVARGKSGTLYFGANMEFVGATMQQTVHAEQSAVTHAWLRGESGLAGIT 123
Query: 88 VSAILPDSNKFVSPCGSCRQVIAEFSS 114
V+ +PCG CRQ + E +S
Sbjct: 124 VN---------YTPCGHCRQFMNELNS 141
>sp|B0TQV3|CDD_SHEHH Cytidine deaminase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=cdd PE=3 SV=1
Length = 296
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 33 PYSKLQVGAALLCQDDTIFTGCNVENASYGM--TICAEKTAISKAISEGQTKFKRIAVSA 90
P S+ VGA + I+ G N+E + ++ AE++AIS A G++ + I V+A
Sbjct: 66 PISEFHVGAIAKGKSGDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIEDIIVNA 125
Query: 91 ILPDSNKFVSPCGSCRQVIAEF 112
SPCG CRQ I E
Sbjct: 126 ---------SPCGHCRQFINEL 138
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 24 IQARDNA---YCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQ 80
I+A D+A Y PY+K L +D + G ENA++ ++ + A+S ++
Sbjct: 193 IEALDHAGLSYAPYTKNYASVVLETKDGATYCGRYAENAAFNPSMQPMQMALS-TMARHN 251
Query: 81 TKFKRIAVSAILPDSNKFVSPCGSC 105
F I + ++ S +S G+
Sbjct: 252 RDFSEINRAVLIESSKGVISLVGAA 276
>sp|Q9CP11|CDD_PASMU Cytidine deaminase OS=Pasteurella multocida (strain Pm70) GN=cdd
PE=3 SV=1
Length = 294
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVENASYGM--TICAEKTAISKAISEGQTKFKRIAVS 89
P S+ VGA + Q + G N+E AS + T+ AE++AIS A ++ + V+
Sbjct: 67 APISQFHVGAIAIGQRGAYYFGANLEFASTHIQQTVHAEQSAISHAWMNHESAITDVVVN 126
Query: 90 AILPDSNKFVSPCGSCRQVIAEF-SSPACDIQV 121
+PCG CRQ + E ++P I +
Sbjct: 127 ---------YTPCGHCRQFMNELKTAPQLKIHL 150
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 30 AYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQT 81
A+ PYSK G A+ +D I+ G ENA++ ++ A + A++ + G T
Sbjct: 204 AHAPYSKSYHGIAIETKDKQIYRGSYAENAAFNPSLPALQVALNHLLLSGDT 255
>sp|A8H5H1|CDD_SHEPA Cytidine deaminase OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=cdd PE=3 SV=1
Length = 296
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 33 PYSKLQVGAALLCQDDTIFTGCNVENASYGM--TICAEKTAISKAISEGQTKFKRIAVSA 90
P S+ VGA + I+ G N+E + ++ AE++AIS A G++ + I V+A
Sbjct: 66 PISQFHVGAIAKGKSGDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIEDIIVNA 125
Query: 91 ILPDSNKFVSPCGSCRQVIAEF 112
SPCG CRQ I E
Sbjct: 126 ---------SPCGHCRQFINEL 138
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 24 IQARDNA---YCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQ 80
I+ D+A Y PY+K L +D + G ENA++ ++ + A+S ++
Sbjct: 193 IEGLDHAGLSYAPYTKAYASVVLETKDGATYCGRYAENAAFNPSMQPMQMALS-TMARHN 251
Query: 81 TKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
F I + ++ S +S G+ + S A +++ ++V+ +
Sbjct: 252 RDFSEINRAVLIESSKGVISLVGAAMDAL--HSVAAVELEHIVVEPE 296
>sp|B7NMA8|CDD_ECO7I Cytidine deaminase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC)
GN=cdd PE=3 SV=1
Length = 294
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ + I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALEAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|A0KJH4|CDD_AERHH Cytidine deaminase OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=cdd PE=3 SV=1
Length = 293
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVENASYGM--TICAEKTAISKAISEGQTKFKRIAVS 89
P SK VGA + G N+E A G+ ++ AE++AIS A G+T I V+
Sbjct: 65 APISKFFVGAIACGLSGNWYFGANMEFAGQGLFHSVHAEQSAISNAWLGGETGISEITVN 124
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSS 114
+PCG CRQ + E S+
Sbjct: 125 ---------YTPCGHCRQFMNELST 140
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 4 HDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGM 63
HD + + DP+ Q ++ A +Y PYS+ AL D IF G ENA++
Sbjct: 180 HDELTLVSDDPLWQA----ALAAARQSYAPYSQGYAAVALQFADGRIFCGRYAENAAFNP 235
Query: 64 TICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVL 122
++ + A + A+ G+ I + +L + +S S R + S + Q +
Sbjct: 236 SLPPMQMACAHAVLGGE-DLATIRRAVLLESKDGQISQQDSARATLKALGSVELEYQAV 293
>sp|B1IYC6|CDD_ECOLC Cytidine deaminase OS=Escherichia coli (strain ATCC 8739 / DSM 1576
/ Crooks) GN=cdd PE=3 SV=1
Length = 294
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S + D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-SLDLRI 147
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|C5BCM4|CDD_EDWI9 Cytidine deaminase OS=Edwardsiella ictaluri (strain 93-146) GN=cdd
PE=3 SV=1
Length = 295
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 33 PYSKLQVGAALLCQDDTIFTGCNVENASYGM--TICAEKTAISKAISEGQTKFKRIAVSA 90
P S QVGA + ++ G N+E + + TI AE+ AI+ A G+T I V+
Sbjct: 67 PISHFQVGAIVHGASGNLYFGANMEFSGTPLQQTIHAEQCAITHAWLRGETALASITVN- 125
Query: 91 ILPDSNKFVSPCGSCRQVIAEFSS 114
+PCG CRQ + E +S
Sbjct: 126 --------CTPCGHCRQFMNELNS 141
>sp|A7ZNW5|CDD_ECO24 Cytidine deaminase OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=cdd PE=3 SV=1
Length = 294
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|Q1R9T0|CDD_ECOUT Cytidine deaminase OS=Escherichia coli (strain UTI89 / UPEC) GN=cdd
PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|B7NCH2|CDD_ECOLU Cytidine deaminase OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|Q8FFV3|CDD_ECOL6 Cytidine deaminase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|Q0TFU8|CDD_ECOL5 Cytidine deaminase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|A1AD04|CDD_ECOK1 Cytidine deaminase OS=Escherichia coli O1:K1 / APEC GN=cdd PE=3
SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|B7MXF5|CDD_ECO81 Cytidine deaminase OS=Escherichia coli O81 (strain ED1a) GN=cdd
PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|B7MF55|CDD_ECO45 Cytidine deaminase OS=Escherichia coli O45:K1 (strain S88 / ExPEC)
GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|B7UFF9|CDD_ECO27 Cytidine deaminase OS=Escherichia coli O127:H6 (strain E2348/69 /
EPEC) GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|B5YW75|CDD_ECO5E Cytidine deaminase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|Q8X648|CDD_ECO57 Cytidine deaminase OS=Escherichia coli O157:H7 GN=cdd PE=3 SV=3
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|B7LVA3|CDD_ESCF3 Cytidine deaminase OS=Escherichia fergusonii (strain ATCC 35469 /
DSM 13698 / CDC 0568-73) GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|Q32EM3|CDD_SHIDS Cytidine deaminase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|Q3Z062|CDD_SHISS Cytidine deaminase OS=Shigella sonnei (strain Ss046) GN=cdd PE=3
SV=1
Length = 294
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|P0ABF7|CDD_SHIFL Cytidine deaminase OS=Shigella flexneri GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
>sp|Q0T2Y0|CDD_SHIF8 Cytidine deaminase OS=Shigella flexneri serotype 5b (strain 8401)
GN=cdd PE=3 SV=1
Length = 294
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 32 CPYSKLQVGAALLCQDDTIFTGCNVE--NASYGMTICAEKTAISKAISEGQTKFKRIAVS 89
P S VGA T + G N+E A+ T+ AE++AIS A G+ I V+
Sbjct: 66 TPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVN 125
Query: 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
+PCG CRQ + E +S D+++
Sbjct: 126 ---------YTPCGHCRQFMNELNS-GLDLRI 147
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 28 DNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTI 65
+ ++ PYSK G AL C+D IF+G ENA++ T+
Sbjct: 200 NRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTL 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,295,162
Number of Sequences: 539616
Number of extensions: 1922680
Number of successful extensions: 3776
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3534
Number of HSP's gapped (non-prelim): 238
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)