Query psy2494
Match_columns 166
No_of_seqs 175 out of 1111
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dmo_A Cytidine deaminase; str 100.0 1.2E-48 4.1E-53 300.0 16.7 122 16-143 11-134 (138)
2 2d30_A Cytidine deaminase; pur 100.0 1.7E-48 5.8E-53 300.2 16.3 129 16-155 12-140 (141)
3 1r5t_A Cytidine deaminase; zin 100.0 2E-46 6.9E-51 288.7 15.2 135 9-154 3-141 (142)
4 3mpz_A Cytidine deaminase; ssg 100.0 1.8E-46 6.1E-51 291.4 12.9 126 15-156 24-149 (150)
5 3r2n_A Cytidine deaminase; str 100.0 7.1E-46 2.4E-50 284.7 13.1 125 15-155 9-133 (138)
6 2fr5_A Cytidine deaminase; tet 100.0 8.2E-45 2.8E-49 281.1 16.4 132 12-155 10-143 (146)
7 1uwz_A Cytidine deaminase; CDD 100.0 8E-44 2.7E-48 272.3 16.1 130 16-156 3-132 (136)
8 3oj6_A Blasticidin-S deaminase 100.0 2.3E-43 7.7E-48 276.0 17.2 126 6-143 21-148 (158)
9 2z3g_A Blasticidin-S deaminase 100.0 1.9E-42 6.4E-47 262.9 18.0 123 11-143 2-125 (130)
10 3b8f_A Putative blasticidin S 100.0 5.4E-43 1.8E-47 269.5 9.7 128 15-156 3-134 (142)
11 4eg2_A Cytidine deaminase; UMP 100.0 6.3E-38 2.1E-42 266.1 11.2 123 16-158 53-177 (298)
12 1ctt_A Cytidine deaminase; hyd 100.0 7.5E-38 2.6E-42 265.6 10.6 127 10-157 45-173 (294)
13 1ctt_A Cytidine deaminase; hyd 100.0 3.7E-34 1.3E-38 242.9 13.3 107 12-123 184-292 (294)
14 4eg2_A Cytidine deaminase; UMP 100.0 9.7E-34 3.3E-38 240.5 12.9 102 16-123 192-295 (298)
15 2b3j_A TRNA adenosine deaminas 99.7 4.1E-18 1.4E-22 132.5 9.3 90 15-113 6-97 (159)
16 2a8n_A Cytidine and deoxycytid 99.7 7.1E-18 2.4E-22 128.9 8.8 89 16-113 4-94 (144)
17 1p6o_A Cytosine deaminase; hyd 99.7 1E-17 3.4E-22 130.7 7.1 91 15-113 13-105 (161)
18 1wwr_A TRNA adenosine deaminas 99.7 2.7E-17 9.3E-22 129.6 9.0 89 16-113 23-113 (171)
19 1z3a_A TRNA-specific adenosine 99.7 6E-17 2.1E-21 127.1 8.1 90 15-113 8-99 (168)
20 2w4l_A DCMP deaminse, deoxycyt 99.6 3.1E-15 1.1E-19 118.4 10.3 88 14-113 11-118 (178)
21 2hvw_A Deoxycytidylate deamina 99.6 3.9E-15 1.3E-19 118.5 9.4 88 15-113 41-144 (184)
22 2nx8_A TRNA-specific adenosine 99.6 1.3E-14 4.5E-19 114.9 9.2 93 12-113 11-106 (179)
23 1wkq_A Guanine deaminase; doma 99.5 1E-14 3.5E-19 114.1 7.2 91 16-114 11-103 (164)
24 1vq2_A DCMP deaminase, deoxycy 99.4 1.6E-12 5.6E-17 103.4 9.2 87 16-113 3-143 (193)
25 2g84_A Cytidine and deoxycytid 99.0 2E-09 6.9E-14 86.1 10.9 95 11-113 23-125 (197)
26 3dh1_A TRNA-specific adenosine 98.9 1.6E-09 5.6E-14 86.3 7.5 102 3-113 10-122 (189)
27 2hxv_A Diaminohydroxyphosphori 98.2 7.2E-06 2.5E-10 70.6 10.4 85 16-113 14-106 (360)
28 2g6v_A Riboflavin biosynthesis 98.1 3.9E-06 1.3E-10 73.3 6.5 84 14-113 28-119 (402)
29 2b3z_A Riboflavin biosynthesis 98.1 8.4E-06 2.9E-10 70.4 8.3 82 16-113 14-103 (373)
30 3g8q_A Predicted RNA-binding p 97.8 0.00011 3.8E-09 60.8 9.6 101 36-165 21-130 (278)
31 2nyt_A Probable C->U-editing e 96.7 0.0046 1.6E-07 49.0 7.0 63 48-120 48-112 (190)
32 3bh1_A UPF0371 protein DIP2346 86.6 0.73 2.5E-05 40.9 4.7 61 6-78 335-395 (507)
33 3v4k_A DNA DC->DU-editing enzy 72.1 13 0.00045 29.5 7.2 53 63-123 77-132 (203)
34 3vow_A Probable DNA DC->DU-edi 42.0 13 0.00046 29.1 2.3 54 62-123 62-118 (190)
35 2ywm_A Glutaredoxin-like prote 41.9 39 0.0013 25.2 5.0 28 99-126 34-67 (229)
36 3eur_A Uncharacterized protein 32.1 27 0.00092 23.9 2.4 30 100-129 41-78 (142)
37 2a2l_A Unknown; structural gen 31.6 91 0.0031 22.8 5.4 62 7-77 7-69 (145)
38 1a8l_A Protein disulfide oxido 27.0 76 0.0026 23.3 4.4 26 102-127 35-63 (226)
39 1ysp_A Transcriptional regulat 26.7 1.4E+02 0.0049 21.5 5.8 47 16-62 96-148 (181)
40 3ewl_A Uncharacterized conserv 23.4 59 0.002 21.8 2.9 9 100-108 37-45 (142)
41 4a0t_A Tail fiber protein; vir 22.9 18 0.00063 28.2 0.1 17 35-51 104-120 (227)
42 3fk8_A Disulphide isomerase; A 22.3 87 0.003 20.9 3.6 27 100-126 39-71 (133)
43 3gv1_A Disulfide interchange p 21.8 1.9E+02 0.0064 20.7 5.5 22 100-122 24-45 (147)
44 2fwh_A Thiol:disulfide interch 21.6 51 0.0018 22.4 2.3 27 100-126 41-73 (134)
45 3obf_A Putative transcriptiona 21.5 1.2E+02 0.0041 21.9 4.4 43 16-60 96-145 (176)
46 2gez_B L-asparaginase beta sub 21.0 1.3E+02 0.0045 21.9 4.5 34 22-58 80-113 (133)
47 1zma_A Bacterocin transport ac 20.8 45 0.0015 22.0 1.8 13 100-112 39-51 (118)
48 4e0h_A Mitochondrial FAD-linke 20.1 48 0.0016 22.9 1.8 16 99-114 44-59 (106)
No 1
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.2e-48 Score=300.00 Aligned_cols=122 Identities=38% Similarity=0.711 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCC--ceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQT--KFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~--~i~~i~vv~~~~ 93 (166)
..+|+++|++++++||+|||+|+||||++++||+||+|+||||++|+.|+||||+||++|+++|++ +|++|+|++
T Consensus 11 ~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~--- 87 (138)
T 3dmo_A 11 HHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVG--- 87 (138)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEE---
T ss_pred HHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEc---
Confidence 468999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCc
Q psy2494 94 DSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTL 143 (166)
Q Consensus 94 ~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~ 143 (166)
+.+.+++|||+|||+|.||+. ++++|++.+.+|+ ++.++|+||||++
T Consensus 88 ~~~~~~~PCG~CRQ~l~Ef~~--~~~~V~~~~~~g~-~~~~tl~eLLP~~ 134 (138)
T 3dmo_A 88 ETHGPIAPCGACRQVMIELGK--PTLEVVLTNMQGD-VRVTSAGDLLPDA 134 (138)
T ss_dssp SCSSSCCCCHHHHHHHHHHHC--TTCEEEEECSSSC-EEEEEHHHHSTTC
T ss_pred CCCCccCCCHHHHHHHHHhCC--CCcEEEEECCCCC-EEEeEHHHhCcCc
Confidence 778899999999999999986 7999999999998 8899999999997
No 2
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=100.00 E-value=1.7e-48 Score=300.21 Aligned_cols=129 Identities=45% Similarity=0.706 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCCC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDS 95 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~~ 95 (166)
|++|+++|++++++||+|||+|+||||++++||+||+|+|+||++|++++||||+||++|+++|+++|++|+|++ +.
T Consensus 12 ~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aiav~~---~~ 88 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVA---DT 88 (141)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEE---SC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEEEEe---CC
Confidence 779999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCC
Q psy2494 96 NKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLP 155 (166)
Q Consensus 96 ~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~ 155 (166)
+.+++|||+|||+|.||+. ++++|++.+.+|. ++.++|+||||++ |+|.+|.
T Consensus 89 ~~~~~PCG~CRQ~l~E~~~--~~~~V~~~~~~g~-~~~~~l~eLLP~~-----F~~~~l~ 140 (141)
T 2d30_A 89 KRPVPPCGACRQVMVELCK--QDTKVYLSNLHGD-VQETTVGELLPGA-----FLAEDLH 140 (141)
T ss_dssp SSCCCCCHHHHHHHHHHSC--TTCEEEEECSSSC-EEEEEHHHHSTTC------------
T ss_pred CCccCcCHHHHHHHHHhcC--CCeEEEEECCCCC-EEEEEHHHhCCCC-----CChhhcC
Confidence 7789999999999999986 7999999999887 8899999999997 7888874
No 3
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=100.00 E-value=2e-46 Score=288.67 Aligned_cols=135 Identities=34% Similarity=0.610 Sum_probs=123.3
Q ss_pred cCCCCHH-HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCc-eeEE
Q psy2494 9 FSALDPI-EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTK-FKRI 86 (166)
Q Consensus 9 ~~~l~~~-~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~-i~~i 86 (166)
...|++. +++|+++|++++++||+|||+|+||||++++||+||+|+|+||++|++|+||||+||++|+++|.++ |++|
T Consensus 3 ~~~~~~~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i 82 (142)
T 1r5t_A 3 VGGIEDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCM 82 (142)
T ss_dssp CTTSCHHHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEE
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEE
Confidence 4556664 7889999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred EEEeeeCCCCCcc-CCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEe-ecccccCCcccCCCCCCCCC
Q psy2494 87 AVSAILPDSNKFV-SPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLI-TIDGMYLTLHCCWERGNLVL 154 (166)
Q Consensus 87 ~vv~~~~~~~~~~-~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~-~l~eLLP~~~~~~~~~~~~~ 154 (166)
++++ +.+.++ +|||+|||+|.||+. ++++|++.+.+|. ++.+ +|+||||++ |++.+|
T Consensus 83 ~vv~---~~~~~~~~PCG~CRq~l~e~~~--~~~~v~~~~~~g~-~~~~~~l~eLLP~~-----f~~~~l 141 (142)
T 1r5t_A 83 VICG---DSEDQCVSPCGVCRQFINEFVV--KDFPIVMLNSTGS-RSKVMTMGELLPMA-----FGPSHL 141 (142)
T ss_dssp EEEE---SCSSSCCCCCHHHHHHHHTTSC--TTCEEEEECSSSS-SEEEEEHHHHSTTC-----CCGGGC
T ss_pred EEEe---CCCCcccCHHHHHHHHHHHhCC--CCEEEEEECCCCC-EEEeCcHHHHCCCC-----CChhhc
Confidence 9999 777677 999999999999986 7999999999987 6667 999999997 677665
No 4
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=100.00 E-value=1.8e-46 Score=291.37 Aligned_cols=126 Identities=32% Similarity=0.513 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCC
Q psy2494 15 IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPD 94 (166)
Q Consensus 15 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~ 94 (166)
++++|+++|++++++||+|||+|+||||++++||+||+|+||||++|++|+||||+||++|+++|+++|++|+|++ +
T Consensus 24 ~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G~~~i~aiavv~---~ 100 (150)
T 3mpz_A 24 NWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVG---P 100 (150)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEC---T
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcCCCceEEEEEEc---C
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred CCCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCCC
Q psy2494 95 SNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPD 156 (166)
Q Consensus 95 ~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~~ 156 (166)
.+.+++|||+|||+|.||++ +++ ++.+.+| .++|+||||++ |++.+|..
T Consensus 101 ~~~~~~PCG~CRQ~L~Ef~~--~~v--~v~~~~g----~~tl~eLLP~~-----F~~~~L~~ 149 (150)
T 3mpz_A 101 DGGVLMPCGRCRQVLLEHGG--PEL--LIDHAHG----PRPLRELLPDA-----FGPDDLGR 149 (150)
T ss_dssp TSCBCCCCHHHHHHHHHHHC--TTC--EECCTTC----CEEHHHHSTTC-----CCC-----
T ss_pred CCCccCCCHHHHHHHHHhCC--CCE--EEEcCCC----cEEHHHhCCCC-----CChhhhcc
Confidence 78899999999999999985 555 4455666 37999999998 78888764
No 5
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=100.00 E-value=7.1e-46 Score=284.66 Aligned_cols=125 Identities=30% Similarity=0.490 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCC
Q psy2494 15 IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPD 94 (166)
Q Consensus 15 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~ 94 (166)
++++|+++|++++++||+|||+|+||||++++||+||+|+|+||++|++++||||+||++|+++|+++|++|+|++ +
T Consensus 9 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G~~~i~aiav~~---~ 85 (138)
T 3r2n_A 9 NWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGGGRLVAVYCVD---G 85 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEC---T
T ss_pred hHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcCCCceEEEEEEc---C
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred CCCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCC
Q psy2494 95 SNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLP 155 (166)
Q Consensus 95 ~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~ 155 (166)
.+.+++|||+|||+|.||+. ++ |++.+++| .++|+||||++ |+|.+|.
T Consensus 86 ~~~~~~PCG~CRQ~l~E~~~--~~--i~v~~~~g----~~~l~eLLP~~-----F~~~~l~ 133 (138)
T 3r2n_A 86 NGDSLMPCGRCRQLLYEHGG--PE--LKIMTPKG----VQTMAQLLPQA-----FNPQERI 133 (138)
T ss_dssp TSCBCCCCHHHHHHHHHHHC--TT--CEEEETTE----EEEHHHHSCC-------------
T ss_pred CCCcCCCCHHHHHHHHHhCC--CC--EEEECCCC----cEEHHHhCCCC-----CChhhhc
Confidence 77899999999999999995 45 56666765 48999999997 6777664
No 6
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=100.00 E-value=8.2e-45 Score=281.06 Aligned_cols=132 Identities=46% Similarity=0.766 Sum_probs=122.2
Q ss_pred CCH-HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEe
Q psy2494 12 LDP-IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSA 90 (166)
Q Consensus 12 l~~-~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~ 90 (166)
|++ ++++|+++|+++++++|+|||+|+||||++++||+||+|+|+||++|++++||||+||++|+++|.++|++++|++
T Consensus 10 ~~~~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~ 89 (146)
T 2fr5_A 10 VEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISS 89 (146)
T ss_dssp -CCHHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEe
Confidence 444 4678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCc-cCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCC
Q psy2494 91 ILPDSNKF-VSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLP 155 (166)
Q Consensus 91 ~~~~~~~~-~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~ 155 (166)
+.+.+ ++|||+|||+|.||+ ++++|++.+.+|. ++.++|+||||++ |++.+|.
T Consensus 90 ---~~~~~~~~PCG~Crq~l~E~~---~~~~v~~~~~~g~-~~~~~l~eLLP~~-----F~~~~l~ 143 (146)
T 2fr5_A 90 ---DLQEEFISPCGACRQVMREFG---TDWAVYMTKPDGT-FVVRTVQELLPAS-----FGPEDLQ 143 (146)
T ss_dssp ---SCSSSCCCCCHHHHHHHHHTC---SSCEEEEECTTSC-EEEEEHHHHSTTC-----CCGGGGT
T ss_pred ---CCCCcccCCCHHHHHHHHHhC---CCCEEEEECCCCC-EEEEEHHHhCCCC-----CChHHHh
Confidence 66666 899999999999998 7999999999998 8889999999997 6787774
No 7
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=100.00 E-value=8e-44 Score=272.31 Aligned_cols=130 Identities=45% Similarity=0.742 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCCC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDS 95 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~~ 95 (166)
+++|+++|++++++||+|||+|+|||||+++||+||+|+|+||++|++++||||+||.+|+++|.++|++++++. +.
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~G~~~~~~~~l~~---~~ 79 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAA---DT 79 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEEE---SC
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHCCCCCeEEEEEEe---CC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCCC
Q psy2494 96 NKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPD 156 (166)
Q Consensus 96 ~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~~ 156 (166)
+.+++|||+|||+|.||+. ++++|++.+.+|. ++.++|+||||++ |++.+|.+
T Consensus 80 ~~~~~PCg~Crq~l~e~~~--~~~~v~~~~~~g~-~~~~~l~eLLP~~-----f~~~~l~~ 132 (136)
T 1uwz_A 80 PGPVSPCGACRQVISELCT--KDVIVVLTNLQGQ-IKEMTVEELLPGA-----FSSEDLHD 132 (136)
T ss_dssp SSSCCCCHHHHHHHHHHSC--TTCEEEEECSSSC-EEEEEHHHHSTTC-----CCGGGC--
T ss_pred CCccCHHHHHHHHHHHcCC--CCcEEEEECCCCC-EEEEEHHHhCCCC-----CCchHhcc
Confidence 7789999999999999986 7999999999987 8899999999997 68888743
No 8
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=100.00 E-value=2.3e-43 Score=276.02 Aligned_cols=126 Identities=26% Similarity=0.499 Sum_probs=114.3
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhcCCCCCC-CceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCcee
Q psy2494 6 IMEFSALDPIEQNLANLSIQARDNAYCPYSK-LQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFK 84 (166)
Q Consensus 6 ~~~~~~l~~~~~~L~~~A~~a~~~ayaPyS~-f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~ 84 (166)
.+.+++|++++++|+++|++++++ +|||+ |+||||++++||+||+|+|||| |+.++||||+||++|+++|.++|+
T Consensus 21 ~~~~~~L~~ed~~Li~~A~~a~~~--~PyS~~f~VGAAll~~dG~i~tG~NVEn--~~~~lCAEr~Ai~~Avs~G~~~~~ 96 (158)
T 3oj6_A 21 SMAPEPLSAAGQNLIDTATSVING--IPVSDFYSVASAAISDDGRVFSGVNVYH--FNGGPCAELVVLGVAAAAGATKLT 96 (158)
T ss_dssp ----CBCCHHHHHHHHHHHHHHHT--SCCCSSSCEEEEEEETTSCEEEEECCCC--TTTCCCHHHHHHHHHHHTTCCCEE
T ss_pred ccccccCCHHHHHHHHHHHHHHHh--CCCCCCCcEEEEEEeCCCCEEEEEcccc--CCccccHHHHHHHHHHHhCCCceE
Confidence 456788999999999999999875 89997 9999999999999999999997 889999999999999999999999
Q ss_pred EEEEEeeeCC-CCCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCc
Q psy2494 85 RIAVSAILPD-SNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTL 143 (166)
Q Consensus 85 ~i~vv~~~~~-~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~ 143 (166)
+|++++ + .+.+++|||+|||+|.||+ ++++|++.+.+| ++.++|+||||++
T Consensus 97 ai~vv~---~~~~~~~~PCG~CRQvL~Ef~---~~~~vil~~~~g--~~~~~l~eLLP~~ 148 (158)
T 3oj6_A 97 HIVAIA---NEGRGILSPCGRCRQVLADLH---PGIKAIVIGKEG--PKMVAVEELLPSI 148 (158)
T ss_dssp EEEEEE---TTTTEEECCCHHHHHHHHHHS---TTCEEEECCSSS--CEEEEGGGGSSSC
T ss_pred EEEEEe---CCCCCcCCCCHHHHHHHHHhC---CCCEEEEEcCCC--cEEEEHHHhCcCC
Confidence 999988 5 4678999999999999997 789999999888 6889999999997
No 9
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=100.00 E-value=1.9e-42 Score=262.92 Aligned_cols=123 Identities=25% Similarity=0.397 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEe
Q psy2494 11 ALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSA 90 (166)
Q Consensus 11 ~l~~~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~ 90 (166)
+|++++++|+++|+++++++|+| |+|+||||++++||+||+|+|+| +|++++||||+||++|+++|.++|+++++++
T Consensus 2 ~l~~~~~~L~~~A~~a~~~ay~~-s~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~G~~~~~~i~vv~ 78 (130)
T 2z3g_A 2 PLSQEESTLIERATATINSIPIS-EDYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAAAAGNLTCIVAIG 78 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCCC-SSSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhhCCC-CCCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHcCCCceEEEEEEE
Confidence 48899999999999999999987 99999999999999999999999 6999999999999999999999999999998
Q ss_pred eeCCCCC-ccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCc
Q psy2494 91 ILPDSNK-FVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTL 143 (166)
Q Consensus 91 ~~~~~~~-~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~ 143 (166)
+.+. +++|||+|||+|.||+ ++++|++.+.+|. ++.++|+||||++
T Consensus 79 ---~~~~~~~~PCG~Crq~l~e~~---~~~~v~~~~~~g~-~~~~~l~eLLP~~ 125 (130)
T 2z3g_A 79 ---NENRGILSPCGRCRQVLLDLH---PGIKAIVKDSDGQ-PTAVGIRELLPSG 125 (130)
T ss_dssp ---TTTTEEECCCHHHHHHHHHHC---TTCEEEEECTTSC-EEEEEGGGGSCC-
T ss_pred ---CCCCCccCcCHHHHHHHHHhC---CCCEEEEECCCCC-EEEEEHHHhCcCC
Confidence 6665 8899999999999998 7999999999887 8899999999997
No 10
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=100.00 E-value=5.4e-43 Score=269.46 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCC
Q psy2494 15 IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPD 94 (166)
Q Consensus 15 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~ 94 (166)
++++|+++|++++++||+||| +|||||+++||+||+|+|+||++|++++||||+||++|+++|.+.++.+++++ +
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G~~~~~~~~v~~---~ 77 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW--GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQKKVTHSICLAR---E 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC--EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHTCCEEEEEEEEE---S
T ss_pred HHHHHHHHHHHHHHhcCCCCC--CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCCCCcEEEEEEEe---c
Confidence 568899999999999999999 99999999999999999999999999999999999999999998889999888 5
Q ss_pred CCC----ccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCCC
Q psy2494 95 SNK----FVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPD 156 (166)
Q Consensus 95 ~~~----~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~~ 156 (166)
.+. +++|||+|||+|.||+ ++++|++.+.+|. ++.++|+||||++ |++.++.+
T Consensus 78 ~~~~~~~~~sPCG~CRq~l~e~~---~~~~v~~~~~~g~-~~~~~l~eLLP~~-----f~~~~~~~ 134 (142)
T 3b8f_A 78 NEHSELKVLSPCGVCQERLFYWG---PEVQCAITNAKQD-IIFKPLKELQPYH-----WTEAYHDE 134 (142)
T ss_dssp STTSCCEECCCCHHHHHHHGGGC---TTCEEECCCTTCC-CCEEEHHHHCTTC-----GGGGGHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHhC---CCCEEEEECCCCC-EEEEEHHHhCCCC-----CCchhhcc
Confidence 443 7899999999999996 8999999988887 7889999999997 66666543
No 11
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=100.00 E-value=6.3e-38 Score=266.15 Aligned_cols=123 Identities=28% Similarity=0.400 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecc--cCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVEN--ASYGMTICAEKTAISKAISEGQTKFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEn--as~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~ 93 (166)
++-|+..+..++++||+|||+|+||||++++||+||+|+|||| ++|+.|+||||+||++|+++|+++|++|+|+.
T Consensus 53 ~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~~i~~iav~~--- 129 (298)
T 4eg2_A 53 ADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVADITINF--- 129 (298)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHHTTCSCEEEEEESS---
T ss_pred HHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEEEEEcccccccccCccccHHHHHHHHHHhCCCCceEEEEeec---
Confidence 3456677889999999999999999999999999999999996 57889999999999999999999999999864
Q ss_pred CCCCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCCCCc
Q psy2494 94 DSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPDPK 158 (166)
Q Consensus 94 ~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~~~~ 158 (166)
+|||+|||+|.||+. .++++|++.+. +.++|+||||++ |+|.+|..+.
T Consensus 130 ------~PCG~CRQ~l~Ef~~-~~~~~v~~~~~-----~~~~l~eLLP~~-----F~~~~L~~~~ 177 (298)
T 4eg2_A 130 ------SPCGHCRQFMNELTT-ASSLKIQLPKR-----AAKTLQEYLPES-----FGPADLGIDS 177 (298)
T ss_dssp ------CCCHHHHHHHTTBTT-TTTCEEECSSS-----CCEEHHHHSTTC-----CCGGGGTCCC
T ss_pred ------CCCHHHHHHHHHhcC-CCceEEEeCCC-----ceeEHHHhCCCC-----CChhhcCCch
Confidence 899999999999984 24688887532 257999999998 6777776654
No 12
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=100.00 E-value=7.5e-38 Score=265.61 Aligned_cols=127 Identities=27% Similarity=0.350 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccC--CCCCCCHHHHHHHHHHHcCCCceeEEE
Q psy2494 10 SALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENAS--YGMTICAEKTAISKAISEGQTKFKRIA 87 (166)
Q Consensus 10 ~~l~~~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas--~~~s~CAEr~Ai~~a~~~G~~~i~~i~ 87 (166)
.+|+. ++.|+++|++++++||+|||+|+||||++++||+||+|+|+||++ |+.|+||||+||++|+++|+++|++|+
T Consensus 45 ~~~~~-~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~~~~~~ia 123 (294)
T 1ctt_A 45 TGLDE-DALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAIT 123 (294)
T ss_dssp SCCCH-HHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCH-HHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEEEEEcCCccCccCCCccCHHHHHHHHHHHcCCCcEEEEE
Confidence 34543 455667888999999999999999999999999999999999998 568999999999999999999999999
Q ss_pred EEeeeCCCCCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCCCC
Q psy2494 88 VSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPDP 157 (166)
Q Consensus 88 vv~~~~~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~~~ 157 (166)
|+. +|||+|||+|.||+ .+++++|++.+.++ ++|+||||++ |++.+|+.+
T Consensus 124 v~~---------~PCG~CRQ~l~E~~-~~~~~~i~~~~~~~-----~~l~eLLP~~-----F~~~~l~~~ 173 (294)
T 1ctt_A 124 VNY---------TPCGHCRQFMNELN-SGLDLRIHLPGREA-----HALRDYLPDA-----FGPKDLEIK 173 (294)
T ss_dssp ESS---------CCCHHHHHHHTTBT-TGGGCEEECTTSCC-----EEHHHHSTTC-----CCGGGGTCC
T ss_pred EEc---------CCCHHHHHHHHHhC-CCCCeEEEEECCCC-----CcHHHhCCCC-----CChhhcCcc
Confidence 865 89999999999996 12789999876543 6999999997 677776544
No 13
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=100.00 E-value=3.7e-34 Score=242.95 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCC--CceeEEEEE
Q psy2494 12 LDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQ--TKFKRIAVS 89 (166)
Q Consensus 12 l~~~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~--~~i~~i~vv 89 (166)
|+.++++|+++|+++++++|+|||+|+|||||+++||+||+|+|+||++|++|+||||+||++|+++|. ++|++++++
T Consensus 184 ~~~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv 263 (294)
T 1ctt_A 184 YALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLA 263 (294)
T ss_dssp CCCCSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred cccChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEE
Confidence 333457899999999999999999999999999999999999999999999999999999999999986 689999999
Q ss_pred eeeCCCCCccCCCHHHHHHHHHhcCCCCCcEEEE
Q psy2494 90 AILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLI 123 (166)
Q Consensus 90 ~~~~~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~ 123 (166)
+ +.+.+++|||+|||+|.||+. ++++|+.
T Consensus 264 ~---~~~~~~sPCG~CRq~L~ef~~--~~~~v~~ 292 (294)
T 1ctt_A 264 E---KADAPLIQWDATSATLKALGC--HSIDRVL 292 (294)
T ss_dssp E---CTTCSSCCHHHHHHHHHHHTC--CCEEEEE
T ss_pred e---cCCCCcCccHHHHHHHHHHCC--CCeEEEE
Confidence 9 777899999999999999986 7888775
No 14
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=100.00 E-value=9.7e-34 Score=240.46 Aligned_cols=102 Identities=19% Similarity=0.320 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCC--ceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQT--KFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~--~i~~i~vv~~~~ 93 (166)
+++|+++|+++++++|+|||+|+|||||+++||+||+|+|+||++|++|+||||+||++|+++|.+ +|+++++++
T Consensus 192 ~~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~--- 268 (298)
T 4eg2_A 192 DEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVE--- 268 (298)
T ss_dssp CCHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEE---
T ss_pred HHHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEe---
Confidence 468999999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred CCCCccCCCHHHHHHHHHhcCCCCCcEEEE
Q psy2494 94 DSNKFVSPCGSCRQVIAEFSSPACDIQVLI 123 (166)
Q Consensus 94 ~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~ 123 (166)
+.+.+++|||+|||+|.||+ |++++-.
T Consensus 269 ~~~~~~sPCG~CRqvL~e~~---pdv~l~y 295 (298)
T 4eg2_A 269 SATGKISHLADTQATLEVIN---PDIPLSY 295 (298)
T ss_dssp CTTCSSCCHHHHHHHHHHHC---TTCCEEE
T ss_pred CCCCCcCCcHHHHHHHHHhC---CCCceEE
Confidence 77789999999999999998 7877754
No 15
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.75 E-value=4.1e-18 Score=132.47 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHc-CCCceeEEEEEeee
Q psy2494 15 IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISE-GQTKFKRIAVSAIL 92 (166)
Q Consensus 15 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~-G~~~i~~i~vv~~~ 92 (166)
.++.++++|++++++++.+ ++++|||+|+. ||+|+ +|.|.++.+++++.|||+.||.+|... |...++...++.
T Consensus 6 ~d~~~m~~A~~~A~~a~~~-~~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv-- 81 (159)
T 2b3j_A 6 NDIYFMTLAIEEAKKAAQL-GEVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV-- 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE--
T ss_pred HHHHHHHHHHHHHHHhhcC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE--
Confidence 4678999999999999998 89999999998 99998 999999999999999999999999886 666666555554
Q ss_pred CCCCCccCCCHHHHHHHHHhc
Q psy2494 93 PDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 93 ~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
...||++|+|+|.++.
T Consensus 82 -----T~EPC~mC~~ai~~ag 97 (159)
T 2b3j_A 82 -----TLEPCVMCAGTIVMSR 97 (159)
T ss_dssp -----EECCCHHHHHHHHHTT
T ss_pred -----CCCCcHHHHHHHHHhC
Confidence 3589999999999997
No 16
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.73 E-value=7.1e-18 Score=128.93 Aligned_cols=89 Identities=20% Similarity=0.292 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHc-CCCceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISE-GQTKFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~-G~~~i~~i~vv~~~~ 93 (166)
++.++++|++++++++.| ++++|||+++. ||+|+ +|.|.++.+++++.|||+.||.+|... |...++...++.
T Consensus 4 d~~~m~~A~~~A~~a~~~-~~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~--- 78 (144)
T 2a8n_A 4 RTHFMELALVEARSAGER-DEVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV--- 78 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE---
T ss_pred HHHHHHHHHHHHHHhhcC-CCCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE---
Confidence 567999999999999998 89999999998 99999 999999999999999999999999886 655565544444
Q ss_pred CCCCccCCCHHHHHHHHHhc
Q psy2494 94 DSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 94 ~~~~~~~PCG~CRQ~L~E~~ 113 (166)
...||++|+|.|.++.
T Consensus 79 ----T~ePC~mC~~ai~~~~ 94 (144)
T 2a8n_A 79 ----TLEPCTMCAAAISFAR 94 (144)
T ss_dssp ----EECCBHHHHHHHHHTT
T ss_pred ----CCCChHHHHHHHHHHC
Confidence 3489999999999997
No 17
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.71 E-value=1e-17 Score=130.68 Aligned_cols=91 Identities=16% Similarity=0.304 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceEEEEE-eCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeee
Q psy2494 15 IEQNLANLSIQARDNAYCPYSKLQVGAALL-CQDDTIF-TGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAIL 92 (166)
Q Consensus 15 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~-~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~ 92 (166)
.++.++++|++++++++.|+ +++|||+|+ ++||+|+ +|.|.++.+++++.|||+.||.+|...|...++...++.
T Consensus 13 ~d~~~M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~~~~~~~~tlYv-- 89 (161)
T 1p6o_A 13 WDQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYT-- 89 (161)
T ss_dssp THHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTTEEEEE--
T ss_pred HHHHHHHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhCCcccccccccc--
Confidence 47789999999999999974 999999999 5899999 999999999999999999999999876544454444443
Q ss_pred CCCCCccCCCHHHHHHHHHhc
Q psy2494 93 PDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 93 ~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
...||++|+|.|.++.
T Consensus 90 -----T~EPC~mC~~ai~~ag 105 (161)
T 1p6o_A 90 -----TLSPCDMCTGAIIMYG 105 (161)
T ss_dssp -----EECCCHHHHHHHHHHT
T ss_pred -----CCCCCHHHHHHHHHhC
Confidence 2479999999999997
No 18
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.71 E-value=2.7e-17 Score=129.60 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHc-CCCceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISE-GQTKFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~-G~~~i~~i~vv~~~~ 93 (166)
++.++++|++++++++.+ ++++|||+|+. ||+|+ +|.|.++.+++++.|||+.||.+|... |...++...++.
T Consensus 23 ~~~~M~~A~~~A~~a~~~-~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv--- 97 (171)
T 1wwr_A 23 KEYFLKVALREAKRAFEK-GEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV--- 97 (171)
T ss_dssp HHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE---
T ss_pred HHHHHHHHHHHHHhcccC-CCCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE---
Confidence 567999999999999998 89999999998 99999 899999999999999999999999886 666666666655
Q ss_pred CCCCccCCCHHHHHHHHHhc
Q psy2494 94 DSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 94 ~~~~~~~PCG~CRQ~L~E~~ 113 (166)
...||++|+|+|.++.
T Consensus 98 ----T~EPC~mC~~ai~~ag 113 (171)
T 1wwr_A 98 ----TLEPCIMCSYALVLSR 113 (171)
T ss_dssp ----SSCCBHHHHHHHHHTT
T ss_pred ----CCCChHHHHHHHHHHC
Confidence 4589999999999997
No 19
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.68 E-value=6e-17 Score=127.12 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHc-CCCceeEEEEEeee
Q psy2494 15 IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISE-GQTKFKRIAVSAIL 92 (166)
Q Consensus 15 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~-G~~~i~~i~vv~~~ 92 (166)
.++.++++|++++++++.+ ++++|||+|+ .||+|+ +|.|.++..++++.|||+.||.+|... |...++...++.
T Consensus 8 ~d~~~M~~A~~~A~~a~~~-~~~pVGAviV-~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv-- 83 (168)
T 1z3a_A 8 SHEYWMRHALTLAKRAWDE-REVPVGAVLV-HNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV-- 83 (168)
T ss_dssp SHHHHHHHHHHHHHHHHHT-TSCCCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE--
T ss_pred HHHHHHHHHHHHHHHhhhc-CCCcEEEEEE-ECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE--
Confidence 3678999999999999987 7999999999 599999 899999999999999999999999876 444554444433
Q ss_pred CCCCCccCCCHHHHHHHHHhc
Q psy2494 93 PDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 93 ~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
...||++|++.|.++.
T Consensus 84 -----TlEPC~mC~~ai~~ag 99 (168)
T 1z3a_A 84 -----TLEPCVMCAGAMIHSR 99 (168)
T ss_dssp -----EECCCHHHHHHHHHHT
T ss_pred -----cCCCcHHHHHHHHHHC
Confidence 3479999999999997
No 20
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=118.42 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecc-------------------cCCCCCCCHHHHHHH
Q psy2494 14 PIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVEN-------------------ASYGMTICAEKTAIS 73 (166)
Q Consensus 14 ~~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEn-------------------as~~~s~CAEr~Ai~ 73 (166)
+.|+.++++|+++++++++| +++|||+|+++||+|+ +|.|.++ ..|+.+.|||++||.
T Consensus 11 ~~d~~~M~~A~~~A~~s~~p--~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~ 88 (178)
T 2w4l_A 11 EWPEYFMAVAFLSAQRSKDP--NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIM 88 (178)
T ss_dssp CHHHHHHHHHHHHHTTCCCS--SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC--CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHH
Confidence 34678999999999999998 9999999999999999 9999875 456778999999999
Q ss_pred HHHHcCCCceeEEEEEeeeCCCCCccCCCHHHHHHHHHhc
Q psy2494 74 KAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 74 ~a~~~G~~~i~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
+|. | ..++...++. ...||++|++.|.+++
T Consensus 89 ~a~--g-~~~~g~tlYv-------TlePC~~Ca~aIi~ag 118 (178)
T 2w4l_A 89 NKN--L-TDVKGCSMYV-------ALFPCNECAKLIIQAG 118 (178)
T ss_dssp C-------CCTTCEEEE-------EECCCHHHHHHHHHTT
T ss_pred Hhc--C-CCccccEEEE-------eCCcHHHHHHHHHHHC
Confidence 874 2 2233322322 2479999999999997
No 21
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.59 E-value=3.9e-15 Score=118.52 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeec---------------ccCCCCCCCHHHHHHHHHHHc
Q psy2494 15 IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVE---------------NASYGMTICAEKTAISKAISE 78 (166)
Q Consensus 15 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvE---------------nas~~~s~CAEr~Ai~~a~~~ 78 (166)
.++.++++|+++++++++| +++|||+|+. ||+|+ +|.|.. |..|+++.|||+.||.+|...
T Consensus 41 ~de~~M~~A~~~A~~s~~~--~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~ 117 (184)
T 2hvw_A 41 WQDYFMANAELISKRSTCN--RAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE 117 (184)
T ss_dssp HHHHHHHHHHHHGGGCCCT--TCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC--CCCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc
Confidence 3677999999999999987 9999999996 89998 899984 456788999999999999887
Q ss_pred CCCceeEEEEEeeeCCCCCccCCCHHHHHHHHHhc
Q psy2494 79 GQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 79 G~~~i~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
|. .++...++. ...||++|++.|.+++
T Consensus 118 g~-~l~g~tlYv-------TlEPC~mCa~aIi~ag 144 (184)
T 2hvw_A 118 GI-SANNTEIYV-------THFPCINCTKALLQAG 144 (184)
T ss_dssp TC-CCTTEEEEE-------EECCCHHHHHHHHHHT
T ss_pred CC-CceeEEEEE-------CCCCHHHHHHHHHHHC
Confidence 64 344444444 3479999999999998
No 22
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.55 E-value=1.3e-14 Score=114.90 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=78.8
Q ss_pred CCH-HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHc-CCCceeEEEE
Q psy2494 12 LDP-IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISE-GQTKFKRIAV 88 (166)
Q Consensus 12 l~~-~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~-G~~~i~~i~v 88 (166)
|++ .++.++++|++++++++.+ ++++|||+|+. ||+|+ +|.|.++..++++.|||..||.+|... |...++...+
T Consensus 11 ~~~~~d~~~M~~Al~~A~~a~~~-g~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tl 88 (179)
T 2nx8_A 11 YSLEEQTYFMQEALKESEKSLQK-AEIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTL 88 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT-TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEE
Confidence 444 4778999999999999986 79999999996 89988 899999999999999999999999875 5555555555
Q ss_pred EeeeCCCCCccCCCHHHHHHHHHhc
Q psy2494 89 SAILPDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 89 v~~~~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
+. ...||++|.+.|.+..
T Consensus 89 Yv-------TlEPC~mCa~ai~~ag 106 (179)
T 2nx8_A 89 FV-------TIEPCVMCSGAIGLAR 106 (179)
T ss_dssp EE-------EECCBHHHHHHHHHTT
T ss_pred EE-------CCCCcHHHHHHHHHhC
Confidence 44 3589999999999987
No 23
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.54 E-value=1e-14 Score=114.11 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHc-CCCceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISE-GQTKFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~-G~~~i~~i~vv~~~~ 93 (166)
++..+++|++.+++++.++++++|||+|+ +||+|+ +|.|..+..++++.|||..||.+|... |...++...++.
T Consensus 11 ~~~~M~~Al~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv--- 86 (164)
T 1wkq_A 11 HETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT--- 86 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE---
Confidence 55688999999999999888999999999 589988 999999988899999999999999875 555666555554
Q ss_pred CCCCccCCCHHHHHHHHHhcC
Q psy2494 94 DSNKFVSPCGSCRQVIAEFSS 114 (166)
Q Consensus 94 ~~~~~~~PCG~CRQ~L~E~~~ 114 (166)
...||+||.+.|.+..-
T Consensus 87 ----T~EPC~mCa~ai~~agI 103 (164)
T 1wkq_A 87 ----SCEPCPMCLGAIYWARP 103 (164)
T ss_dssp ----EECCCHHHHHHHHHHCC
T ss_pred ----eCCChHHHHHHHHHHCC
Confidence 35899999999999973
No 24
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.37 E-value=1.6e-12 Score=103.42 Aligned_cols=87 Identities=25% Similarity=0.373 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccC----------------------------------
Q psy2494 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENAS---------------------------------- 60 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas---------------------------------- 60 (166)
++.+++.|++++++|+.| +++|||+|+ +||+|+ +|.|-.+..
T Consensus 3 d~~fM~~A~~~A~rs~~~--~~~VGAVIV-~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (193)
T 1vq2_A 3 ASTVLQIAYLVSQESKCC--SWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFG 79 (193)
T ss_dssp HHHHHHHHHHHHTTCCCS--SBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-----------------
T ss_pred HHHHHHHHHHHHHhcCCC--CCCEEEEEE-ECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccc
Confidence 567899999999999987 899999988 799998 999988753
Q ss_pred -------------------CCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCCCCCccCCCHHHHHHHHHhc
Q psy2494 61 -------------------YGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 61 -------------------~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
|+.++|||++||.+|...|. .++...++. ...||.+|.+.|.+.+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g~-~~~g~tLYv-------T~ePC~~Ca~aIi~aG 143 (193)
T 1vq2_A 80 STDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGS-SIEGATMYV-------TLSPCPDCAKAIAQSG 143 (193)
T ss_dssp ---CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTC-CCTTCEEEE-------EECCCHHHHHHHHHHT
T ss_pred cccccccchhhccccccccCCCCCCHHHHHHHHHHhcCC-CcCCeEEEE-------eCCCcHHHHHHHHHhC
Confidence 23589999999999988773 233222222 2389999999999997
No 25
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.02 E-value=2e-09 Score=86.09 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCC-CcEE-EEeeecccCCCCCCCHHHHHHHHHHHc-CCCce----
Q psy2494 11 ALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQD-DTIF-TGCNVENASYGMTICAEKTAISKAISE-GQTKF---- 83 (166)
Q Consensus 11 ~l~~~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~d-G~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~-G~~~i---- 83 (166)
++.+.++..+++|+++++++. ..+..||||+|+..| |+|+ +|.|-.+....++.|||..||.+|... |...+
T Consensus 23 ~~~~~d~~~M~~Al~~A~~a~-~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~ 101 (197)
T 2g84_A 23 RVLAAPEARMGYVLELVRANI-AADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADG 101 (197)
T ss_dssp CBCCSHHHHHHHHHHHHHHHH-HTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTT
T ss_pred cCCHHHHHHHHHHHHHHHhhh-hcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccC
Confidence 344457788999999999888 346789999999977 9987 999988878889999999999998764 43332
Q ss_pred -eEEEEEeeeCCCCCccCCCHHHHHHHHHhc
Q psy2494 84 -KRIAVSAILPDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 84 -~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
+...++. ...||-||...|....
T Consensus 102 ~~g~tlYv-------TlEPC~mCa~Aii~ag 125 (197)
T 2g84_A 102 LPACELVT-------SAEPCVMCFGAVIWSG 125 (197)
T ss_dssp SCCEEEEE-------EECCCHHHHHHHHHHC
T ss_pred cCCEEEEE-------eCCCCHHHHHHHHHhC
Confidence 2223322 2489999999999887
No 26
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=98.94 E-value=1.6e-09 Score=86.27 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=70.6
Q ss_pred CccccccCCCC--H-HHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHc
Q psy2494 3 GHDIMEFSALD--P-IEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISE 78 (166)
Q Consensus 3 ~~~~~~~~~l~--~-~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~ 78 (166)
|-|+=++.++. . +++..++.|++.++++.. ..+.+|||+|+. ||+|+ +|.|-.+....++.|||..||.+|...
T Consensus 10 ~~~~~~~n~~~~~~~~d~~~M~~Al~lA~~a~~-~~~~pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~ 87 (189)
T 3dh1_A 10 GVDLGTENLYFQSMEETEKWMEEAMHMAKEALE-NTEVPVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDW 87 (189)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHHHHHHH-TTSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred cccccccccCCCChHHHHHHHHHHHHHHHHhhh-CCCCCEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHH
Confidence 44444544443 2 367789999998888753 247899999986 89987 899986666788999999999998653
Q ss_pred ----CC---CceeEEEEEeeeCCCCCccCCCHHHHHHHHHhc
Q psy2494 79 ----GQ---TKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFS 113 (166)
Q Consensus 79 ----G~---~~i~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~ 113 (166)
|. ..+....++. ...||.||.+.|...+
T Consensus 88 ~~~~~~~~~~~l~g~tLYv-------TlEPC~mCa~Aii~ag 122 (189)
T 3dh1_A 88 CRQSGKSPSEVFEHTVLYV-------TVEPCIMCAAALRLMK 122 (189)
T ss_dssp HHHHCCCHHHHHTTEEEEE-------EECCBHHHHHHHHHHT
T ss_pred HhhcCcccccccCCeEEEE-------eCCChHHHHHHHHHhC
Confidence 21 1233223322 2489999999999987
No 27
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=98.22 E-value=7.2e-06 Score=70.55 Aligned_cols=85 Identities=21% Similarity=0.299 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYC-PYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~aya-PyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~ 93 (166)
.+..+++|++.++++.. ...+.+|||+++. ||+|+ +|.|-. ..+.|||..||.+|...|. .++...++.
T Consensus 14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~~~~-~~~g~tlYv--- 84 (360)
T 2hxv_A 14 YETFMKRAIELAKKGLGRVNPNPPVGAVVVK-DGRIIAEGFHPY----FGGPHAERMAIESARKKGE-DLRGATLIV--- 84 (360)
T ss_dssp HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEE-TTEEEEEEECCS----TTSCCHHHHHHHHHHHTTC-CCTTCEEEE---
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEEEE-CCEEEEEEeCCC----CCCcCHHHHHHHHHHhcCC-CcCCcEEEE---
Confidence 46678999999888653 1237899999986 89977 899875 3589999999999976553 222222222
Q ss_pred CCCCccCCC------HHHHHHHHHhc
Q psy2494 94 DSNKFVSPC------GSCRQVIAEFS 113 (166)
Q Consensus 94 ~~~~~~~PC------G~CRQ~L~E~~ 113 (166)
...|| .+|-+.|.+.+
T Consensus 85 ----TlEPC~h~g~t~~C~~ai~~ag 106 (360)
T 2hxv_A 85 ----TLEPCDHHGKTPPCTDLIIESG 106 (360)
T ss_dssp ----EECCCCSCSSSCCHHHHHHHHT
T ss_pred ----ecCcccccCCCHHHHHHHHHhC
Confidence 24799 79999999987
No 28
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=98.11 E-value=3.9e-06 Score=73.30 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEee
Q psy2494 14 PIEQNLANLSIQARDNAYC-PYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAI 91 (166)
Q Consensus 14 ~~~~~L~~~A~~a~~~aya-PyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~ 91 (166)
+.++..+++|+++++++.. ...+.+|||+++. ||+|+ +|.|-. ..+.|||..||.+|... ++...++.
T Consensus 28 ~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~-~g~ii~~g~n~~----~g~~HAE~~Ai~~a~~~----~~g~tlyv- 97 (402)
T 2g6v_A 28 GQDEYYMARALKLAQRGRFTTHPNPNVGCVIVK-DGEIVGEGYHQR----AGEPHAEVHALRMAGEK----AKGATAYV- 97 (402)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEE-TTEEEEEEECCC----TTSCCHHHHHHHHHGGG----GGSSCEEE-
T ss_pred HHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEE-CCEEEEEEeCCC----CCccHHHHHHHHHhhHh----cCCeEEEE-
Confidence 4577889999999998753 2347899999996 89976 899975 35899999999988432 22222222
Q ss_pred eCCCCCccCCC------HHHHHHHHHhc
Q psy2494 92 LPDSNKFVSPC------GSCRQVIAEFS 113 (166)
Q Consensus 92 ~~~~~~~~~PC------G~CRQ~L~E~~ 113 (166)
...|| .+|-+.|.+.+
T Consensus 98 ------t~ePC~h~G~tp~C~~ai~~ag 119 (402)
T 2g6v_A 98 ------TLEPCSHHGRTPPCCDALIAAG 119 (402)
T ss_dssp ------SSCCC-------CCHHHHHHTT
T ss_pred ------eCCCcCCCCCchHHHHHHHHhC
Confidence 34799 69999999887
No 29
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=98.09 E-value=8.4e-06 Score=70.43 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeC
Q psy2494 16 EQNLANLSIQARDNAYC-PYSKLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILP 93 (166)
Q Consensus 16 ~~~L~~~A~~a~~~aya-PyS~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~ 93 (166)
++..++.|+++++++.. ...+.+|||+++ +||+|+ +|.|-. ..+.|||..||.+|.. .++...++.
T Consensus 14 ~~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~----~~~g~tlyv--- 81 (373)
T 2b3z_A 14 EEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLK----YGEAHAEVHAIHMAGA----HAEGADIYV--- 81 (373)
T ss_dssp HHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCS----TTSCCHHHHHHHHHGG----GGTTCEEEE---
T ss_pred HHHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCC----CCCcCHHHHHHHHhhH----hcCCeEEEE---
Confidence 56789999999998753 124789999988 589977 899875 3589999999999843 222222322
Q ss_pred CCCCccCCC------HHHHHHHHHhc
Q psy2494 94 DSNKFVSPC------GSCRQVIAEFS 113 (166)
Q Consensus 94 ~~~~~~~PC------G~CRQ~L~E~~ 113 (166)
...|| .+|-+.|.+.+
T Consensus 82 ----TlePC~~~G~t~~C~~ai~~ag 103 (373)
T 2b3z_A 82 ----TLEPCSHYGKTPPCAELIINSG 103 (373)
T ss_dssp ----SSCCCCCCSSSCCHHHHHHHHT
T ss_pred ----eCCCccCcCCChHHHHHHHHhC
Confidence 34799 79999999887
No 30
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=97.81 E-value=0.00011 Score=60.80 Aligned_cols=101 Identities=23% Similarity=0.209 Sum_probs=64.6
Q ss_pred CCceEEEEEeCCCcEE-EEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCCCCCccCCCHHHHHHHHHhcC
Q psy2494 36 KLQVGAALLCQDDTIF-TGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSS 114 (166)
Q Consensus 36 ~f~VGAAv~~~dG~i~-~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~~ 114 (166)
|-+|||+++. ||+|+ .| ++ .+.|||..||. | ..++...++. ...||-||-..|...+-
T Consensus 21 NPpVGAVIVk-DGeIIA~G---e~----gTaHAEInAIr-----g-~~L~GaTLYV-------TLEPC~MCAgAII~AGI 79 (278)
T 3g8q_A 21 KRTVTAALLE-GGEIVAVE---EA----DDEHAERKLVR-----R-HDVEGKVVFV-------TARPCLYCARELAEAGV 79 (278)
T ss_dssp CSSCEEEEEE-TTEEEEEE---EC----SSSCHHHHHHH-----H-SCCTTCEEEE-------SSCCCHHHHHHHHTTTC
T ss_pred CCCEEEEEEE-CCEEEEec---CC----CCCCHHHHHhC-----C-CCCCCcEEEE-------eCCchHHHHHHHHHhCC
Confidence 6689999986 89877 56 32 79999999996 1 2222223333 35899999999998773
Q ss_pred CCCCcEEEEEcCCCc--------eEEEeecccccCCcccCCCCCCCCCCCCcceeccCC
Q psy2494 115 PACDIQVLIVKSDRS--------QVGLITIDGMYLTLHCCWERGNLVLPDPKLTISGNE 165 (166)
Q Consensus 115 ~~~~~~Vi~~~~~g~--------~~~~~~l~eLLP~~~~~~~~~~~~~~~~~~~~~~~~ 165 (166)
..+ |+-...+|. .++...+ .|.. .++-+|-++++--++.++|+
T Consensus 80 --kRV-VYGa~~~G~G~e~LreAGIEV~~L---~~eE--~~~~~~~dr~~~l~~~~~~~ 130 (278)
T 3g8q_A 80 --AGV-VYLGRGRGLGPYYLARSGVEVVEV---HPDE--PLGYDPVDRLDVLLTFGGNP 130 (278)
T ss_dssp --CEE-EEEECSSCCHHHHHHTTTCEEEEE---EECS--CCCCCCCSSCSEEEECCSCS
T ss_pred --CEE-EEEecCCChhHHHHHHCCCEEEEe---cChh--hcCCCcchHHHHHHHhcCcc
Confidence 222 333333321 1333333 3333 33467888888888888885
No 31
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=96.66 E-value=0.0046 Score=48.98 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=41.0
Q ss_pred CcE-EEEeeecccCCCCCCCHHHHHHHHHHHcCCCcee-EEEEEeeeCCCCCccCCCHHHHHHHHHhcCCCCCcE
Q psy2494 48 DTI-FTGCNVENASYGMTICAEKTAISKAISEGQTKFK-RIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQ 120 (166)
Q Consensus 48 G~i-~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~-~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~~~~~~~~ 120 (166)
+.+ -+|.|.+. ..+.|||..||.+|......... .+.+.. ...||-+|-+.|.++...++.+.
T Consensus 48 ~~ii~~G~~~~~---~~~~HAE~~Ai~~a~~~l~~~~~~g~TlYv-------TlePC~~Ca~aIi~al~~~~gI~ 112 (190)
T 2nyt_A 48 QVQASRGYLEDE---HAAAHAEEAFFNTILPAFDPALRYNVTWYV-------SSSPCAACADRIIKTLSKTKNLR 112 (190)
T ss_pred CCeEEEEECCCC---CCCcCHHHHHHHHHHHhcCccccCCeEEEE-------EcChHHHHHHHHHHhhhhcCCcc
Confidence 444 48988773 35899999999998653222333 333333 34899999999999943233343
No 32
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=86.60 E-value=0.73 Score=40.89 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=49.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHc
Q psy2494 6 IMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISE 78 (166)
Q Consensus 6 ~~~~~~l~~~~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~ 78 (166)
+|..-.++++|+..+..|++.++..-+| ++|+...||+|+||-+-+ -+.|--++|.+|+..
T Consensus 335 lM~~~~i~~~dR~vv~~A~~~ae~t~~p------a~AieL~DG~IvTGKtS~------LlgasaA~lLNAlK~ 395 (507)
T 3bh1_A 335 VMAKAGIKASQRVVVEPARQVEERTSLP------GCAIELVDGSIITGATSD------LLGCSSSMLLNALKH 395 (507)
T ss_dssp HHHHHTCCGGGSTTHHHHHHHHHHHSSC------EEEEECTTSCEEEEECCS------SBCHHHHHHHHHHHH
T ss_pred HHHHcCCChHhhHHHHHHHHHHHHhCCC------eEEEEeCCCCEEeCCCcc------ccchHHHHHHHHHHH
Confidence 4556667888888999999999988776 899999999999999754 356667788888764
No 33
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=72.12 E-value=13 Score=29.47 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHcC---CCceeEEEEEeeeCCCCCccCCCHHHHHHHHHhcCCCCCcEEEE
Q psy2494 63 MTICAEKTAISKAISEG---QTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLI 123 (166)
Q Consensus 63 ~s~CAEr~Ai~~a~~~G---~~~i~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~ 123 (166)
.+.|||..-|....+.. .....-..-++ - +||..|-+-|.+|...++++..-+
T Consensus 77 ~~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~S---W-----SPC~~CA~~v~~FL~~~~~v~L~I 132 (203)
T 3v4k_A 77 EGRHAELCFLDVIPFWKLDLDQDYRVTCFTS---W-----SPCFSCAQEMAKFISKNKHVSLCI 132 (203)
T ss_pred CCCcHHHHHHHHhhhccCCCCCeEEEEEEEe---C-----CChHHHHHHHHHHHhhCCCeEEEE
Confidence 46899999998776542 23333333333 2 899999999999986556555443
No 34
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=41.99 E-value=13 Score=29.10 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHcC---CCceeEEEEEeeeCCCCCccCCCHHHHHHHHHhcCCCCCcEEEE
Q psy2494 62 GMTICAEKTAISKAISEG---QTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLI 123 (166)
Q Consensus 62 ~~s~CAEr~Ai~~a~~~G---~~~i~~i~vv~~~~~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~ 123 (166)
..+.|||..=|....... .....--.-++ =+||..|-+-|++|-..++++..-+
T Consensus 62 ~~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~S--------wSPC~~CA~~va~FL~~~~~v~L~I 118 (190)
T 3vow_A 62 ETHCHAERCFLSWFCDDILSPNTKYQVTWYTS--------WSPCPDCAGEVAEFLARHSNVNLTI 118 (190)
T ss_dssp CGGGSHHHHHHHHHSSTTSCTTSEEEEEEEEE--------ECCCHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccccHHHHHHHHHhhcCCCCCceEEEEEEEe--------CCchHHHHHHHHHHHHhCCCeEEEE
Confidence 467899999887654432 23333222233 2899999999999975445554443
No 35
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=41.86 E-value=39 Score=25.18 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHHHhcCC------CCCcEEEEEcC
Q psy2494 99 VSPCGSCRQVIAEFSSP------ACDIQVLIVKS 126 (166)
Q Consensus 99 ~~PCG~CRQ~L~E~~~~------~~~~~Vi~~~~ 126 (166)
.+.||.|++++-+|..- .+.+.+.-.|.
T Consensus 34 ~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~ 67 (229)
T 2ywm_A 34 CESCQTAEELLKETVEVIGEAVGQDKIKLDIYSP 67 (229)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECT
T ss_pred CcccHHHHHHHHHHHHHHhccCCCCceEEEEecC
Confidence 57899999999887632 35676665554
No 36
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=32.05 E-value=27 Score=23.85 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHhcC--------CCCCcEEEEEcCCCc
Q psy2494 100 SPCGSCRQVIAEFSS--------PACDIQVLIVKSDRS 129 (166)
Q Consensus 100 ~PCG~CRQ~L~E~~~--------~~~~~~Vi~~~~~g~ 129 (166)
+=|+.|++.+-++.. ...+++|+..+.+..
T Consensus 41 ~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~ 78 (142)
T 3eur_A 41 PGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEE 78 (142)
T ss_dssp SSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSC
T ss_pred CCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCC
Confidence 458999887554432 125677777766543
No 37
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=31.59 E-value=91 Score=22.76 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=42.7
Q ss_pred cccCCCCHH-HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHH
Q psy2494 7 MEFSALDPI-EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAIS 77 (166)
Q Consensus 7 ~~~~~l~~~-~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~ 77 (166)
+.++.|+.+ -.+|+++|++.++.- +++|..+|++..|+...=.-.+.+. +..-..|..+|.+
T Consensus 7 ~~~~~lt~~~A~~l~~aa~~~A~~~-----g~~v~IaVvD~~G~ll~~~rmdga~----~~s~~ia~~KA~T 69 (145)
T 2a2l_A 7 QQVQTITLAAAQQMAAAVEKKATEI-----NVAVVFSVVDRGGNTLLIQRMDEAF----VSSCDISLNKAWS 69 (145)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHT-----TCCCEEEEEETTSCEEEEEECTTSC----TTHHHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHc-----CCCEEEEEEECCCCEEEEEECCCCC----cchHHHHHHHHHH
Confidence 445567765 566888888776652 5579999999999987766777655 4444556666544
No 38
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=26.99 E-value=76 Score=23.33 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=14.3
Q ss_pred CHHHHHHH---HHhcCCCCCcEEEEEcCC
Q psy2494 102 CGSCRQVI---AEFSSPACDIQVLIVKSD 127 (166)
Q Consensus 102 CG~CRQ~L---~E~~~~~~~~~Vi~~~~~ 127 (166)
||.|+++. .+++...+++.+...|-+
T Consensus 35 C~~C~~~~~~~~~la~~~~~v~~~~vd~~ 63 (226)
T 1a8l_A 35 CQYCDQLKQLVQELSELTDKLSYEIVDFD 63 (226)
T ss_dssp CTTHHHHHHHHHHHHTTCTTEEEEEEETT
T ss_pred CchhHHHHHHHHHHHhhCCceEEEEEeCC
Confidence 88887654 333433345666655543
No 39
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=26.75 E-value=1.4e+02 Score=21.55 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcCCC------CCCCceEEEEEeCCCcEEEEeeecccCCC
Q psy2494 16 EQNLANLSIQARDNAYCP------YSKLQVGAALLCQDDTIFTGCNVENASYG 62 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaP------yS~f~VGAAv~~~dG~i~~G~NvEnas~~ 62 (166)
.++|.++..+.+++.|+= ..-..|||.|.+.+|++..++++-.....
T Consensus 96 ~~~l~~~l~~iR~~Gya~~~~e~~~g~~~vAaPv~~~~g~~~~alsv~~p~~r 148 (181)
T 1ysp_A 96 TEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLR 148 (181)
T ss_dssp HHHHHHHHHHHHHHTCEEEESSSSTTBEEEEEEEECTTSCEEEEEEECCBSSS
T ss_pred HHHHHHHHHHHHHhCCeEEccccccCCEEEEEEEECCCCCEEEEEEEEeehHh
Confidence 456777778888888871 12236888899999999999998655443
No 40
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=23.43 E-value=59 Score=21.81 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=6.6
Q ss_pred CCCHHHHHH
Q psy2494 100 SPCGSCRQV 108 (166)
Q Consensus 100 ~PCG~CRQ~ 108 (166)
+=|+.|++.
T Consensus 37 ~~C~~C~~~ 45 (142)
T 3ewl_A 37 PDCSNCRKF 45 (142)
T ss_dssp SSCHHHHHH
T ss_pred CCCccHHHH
Confidence 458888886
No 41
>4a0t_A Tail fiber protein; viral protein, caudovirales, podoviridae, beta-helix, beta-S; HET: 1PE; 1.90A {Enterobacteria phage T7} PDB: 4a0u_A
Probab=22.85 E-value=18 Score=28.18 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.4
Q ss_pred CCCceEEEEEeCCCcEE
Q psy2494 35 SKLQVGAALLCQDDTIF 51 (166)
Q Consensus 35 S~f~VGAAv~~~dG~i~ 51 (166)
..|+||+|++..||+|+
T Consensus 104 k~fh~G~A~vA~DGNI~ 120 (227)
T 4a0t_A 104 KHFHVGQAVVATDGNIQ 120 (227)
T ss_dssp SCEEETTEEECTTSCEE
T ss_pred hhcccceEEEeccCCEe
Confidence 47899999999999887
No 42
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=22.28 E-value=87 Score=20.88 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHhcC------CCCCcEEEEEcC
Q psy2494 100 SPCGSCRQVIAEFSS------PACDIQVLIVKS 126 (166)
Q Consensus 100 ~PCG~CRQ~L~E~~~------~~~~~~Vi~~~~ 126 (166)
+=|+.|+++...|.. .++++.++..+.
T Consensus 39 ~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~ 71 (133)
T 3fk8_A 39 NWCTDCRALDKSLRNQKNTALIAKHFEVVKIDV 71 (133)
T ss_dssp TTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEEC
T ss_pred CCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeC
Confidence 449999988776651 013566666655
No 43
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=21.85 E-value=1.9e+02 Score=20.67 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHhcCCCCCcEEE
Q psy2494 100 SPCGSCRQVIAEFSSPACDIQVL 122 (166)
Q Consensus 100 ~PCG~CRQ~L~E~~~~~~~~~Vi 122 (166)
.-|+.||++-.++.. -++++|.
T Consensus 24 ~~Cp~C~~~~~~l~~-l~~v~v~ 45 (147)
T 3gv1_A 24 PDCPFCKRLEHEFEK-MTDVTVY 45 (147)
T ss_dssp TTCHHHHHHHHHHTT-CCSEEEE
T ss_pred CCChhHHHHHHHHhh-cCceEEE
Confidence 679999999988863 2344443
No 44
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=21.59 E-value=51 Score=22.44 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=16.6
Q ss_pred CCCHHHHHHHH------HhcCCCCCcEEEEEcC
Q psy2494 100 SPCGSCRQVIA------EFSSPACDIQVLIVKS 126 (166)
Q Consensus 100 ~PCG~CRQ~L~------E~~~~~~~~~Vi~~~~ 126 (166)
+=|+.|+++.. ++....+++.++..+.
T Consensus 41 ~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~ 73 (134)
T 2fwh_A 41 DWCVACKEFEKYTFSDPQVQKALADTVLLQANV 73 (134)
T ss_dssp TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEEC
T ss_pred CCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeC
Confidence 34999998764 3332224577776665
No 45
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=21.53 E-value=1.2e+02 Score=21.88 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCCC-------CCceEEEEEeCCCcEEEEeeecccC
Q psy2494 16 EQNLANLSIQARDNAYCPYS-------KLQVGAALLCQDDTIFTGCNVENAS 60 (166)
Q Consensus 16 ~~~L~~~A~~a~~~ayaPyS-------~f~VGAAv~~~dG~i~~G~NvEnas 60 (166)
.++|.+ ..+.+++.|+ .+ -..|++-|.+.+|++..++++-...
T Consensus 96 ~~~l~~-l~~iR~~Gya-~~~~e~~~g~~~iAaPI~~~~g~~~aalsv~~p~ 145 (176)
T 3obf_A 96 EAYLLR-LKESMERGWA-VNFGETSIEEVGVASPVYDHRGNMVASVLIPAPK 145 (176)
T ss_dssp HHHHHH-HHHHHHHTSE-EEESSSSTTEEEEEEEEECTTSCEEEEEEEEEEG
T ss_pred HHHHHH-HHHHHHcCCE-eeccccccCcEEEEEEEECCCCCEEEEEEeEeeh
Confidence 345555 6777888887 22 2378888999999999888886544
No 46
>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding, hydrolase; 2.60A {Lupinus luteus}
Probab=21.05 E-value=1.3e+02 Score=21.86 Aligned_cols=34 Identities=15% Similarity=-0.030 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecc
Q psy2494 22 LSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVEN 58 (166)
Q Consensus 22 ~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEn 58 (166)
++.++.++... ++..|.++++++|++..++|-+.
T Consensus 80 A~~~~i~~~~~---~g~~GvIavd~~G~~~~~~nt~~ 113 (133)
T 2gez_B 80 AADFVIHERTP---KGTVGLIAVSAAGEIAMPFNTTG 113 (133)
T ss_dssp HHHHHHHTSSC---TTSEEEEEEETTSCEECCBSSSE
T ss_pred HHHHHHHHHhc---CCcEEEEEEeCCCcEEEEeCCCC
Confidence 34455554333 78899999999999988888653
No 47
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=20.78 E-value=45 Score=21.96 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHh
Q psy2494 100 SPCGSCRQVIAEF 112 (166)
Q Consensus 100 ~PCG~CRQ~L~E~ 112 (166)
+=||.||++.-.+
T Consensus 39 ~wC~~C~~~~p~l 51 (118)
T 1zma_A 39 KTCPYCRKFAGTL 51 (118)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCccHHHHHHHH
Confidence 4599999986544
No 48
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=20.14 E-value=48 Score=22.92 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=13.5
Q ss_pred cCCCHHHHHHHHHhcC
Q psy2494 99 VSPCGSCRQVIAEFSS 114 (166)
Q Consensus 99 ~~PCG~CRQ~L~E~~~ 114 (166)
+-||+.||+=..++..
T Consensus 44 ~lPC~~C~~hf~~~l~ 59 (106)
T 4e0h_A 44 IYPCNWCAKDFEKYIR 59 (106)
T ss_dssp HCSSHHHHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHH
Confidence 4699999999888863
Done!