RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2494
(166 letters)
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus
anthracis [TaxId: 1392]}
Length = 124
Score = 115 bits (289), Expect = 2e-34
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 5/112 (4%)
Query: 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
+ L +I+AR AY PYSK QVGAALL QD ++ GCNVENASYG+ CAE+TA+ KA
Sbjct: 3 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKA 62
Query: 76 ISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
+SEG +F IA+ D+ + V PCG+CRQV+ E D +V +
Sbjct: 63 VSEGDKEFVAIAIV---ADTKRPVPPCGACRQVMVELCKQ--DTKVYLSNLH 109
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 110 bits (277), Expect = 2e-32
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
L+ +I A + ++ PYSK G AL C+D IF+G ENA++ T+ + A+
Sbjct: 38 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILL 97
Query: 76 ISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVL 122
+G + I + + ++ + + + + D +L
Sbjct: 98 NLKGY-DYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLL 143
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus
subtilis [TaxId: 1423]}
Length = 130
Score = 106 bits (266), Expect = 6e-31
Identities = 56/112 (50%), Positives = 77/112 (68%), Gaps = 5/112 (4%)
Query: 16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
Q L +++ARD AY PYSK QVGAALL +D ++ GCN+ENA+Y M CAE TA+ KA
Sbjct: 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKA 62
Query: 76 ISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
+SEG T+F+ +AV+A D+ VSPCG+CRQVI+E + D+ V++
Sbjct: 63 VSEGDTEFQMLAVAA---DTPGPVSPCGACRQVISELCTK--DVIVVLTNLQ 109
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 141
Score = 106 bits (266), Expect = 7e-31
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 17 QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
+ L +++A + +Y PYS +VG ++L +D IFTG NVENASY ICAE++A+ + +
Sbjct: 11 EALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVL 70
Query: 77 SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITI 136
G + V + ++ VSPCG CRQ I EF D ++++ S S+ ++T+
Sbjct: 71 MAGHRSGWKCMVICGDSE-DQCVSPCGVCRQFINEFVVK--DFPIVMLNSTGSRSKVMTM 127
Query: 137 D 137
Sbjct: 128 G 128
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 136
Score = 105 bits (263), Expect = 2e-30
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Query: 13 DPIE-QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTA 71
+P Q L S +A+ +AYCPYS+ VGAALL D IF+GCN+ENA Y + +CAE+TA
Sbjct: 1 EPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTA 60
Query: 72 ISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQV 131
I KAISEG F+ IA+S+ +F+SPCG+CRQV+ EF D V + K D + V
Sbjct: 61 IQKAISEGYKDFRAIAISS--DLQEEFISPCGACRQVMREF---GTDWAVYMTKPDGTFV 115
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 104 bits (260), Expect = 8e-30
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 4 HDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVE--NASY 61
+ + LD L A A P S VGA T + G N+E A+
Sbjct: 39 SSLKSATGLDEDAL-AFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATM 97
Query: 62 GMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQV 121
T+ AE++AIS A G+ I V+ +PCG CRQ + E +S D+++
Sbjct: 98 QQTVHAEQSAISHAWLSGEKALAAITVN---------YTPCGHCRQFMNELNS-GLDLRI 147
Query: 122 LI 123
+
Sbjct: 148 HL 149
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus
terreus [TaxId: 33178]}
Length = 123
Score = 99.6 bits (248), Expect = 3e-28
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 12 LDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTA 71
L E L + N+ V +A L D IFTG NV + + G CAE
Sbjct: 2 LSQEESTLIERATATI-NSIPISEDYSVASAALSSDGRIFTGVNVYHFTGG--PCAELVV 58
Query: 72 ISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
+ A + I ++ +SPCG CRQV+ + I+ ++ SD
Sbjct: 59 LGTAAAAAAGNLTCIVAIG--NENRGILSPCGRCRQVLLDLHP---GIKAIVKDSD 109
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.1 bits (54), Expect = 5.6
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 48 DTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQ 107
D ++ C+ NA I AE + + + V + + K+
Sbjct: 383 DLLYAMCDRSNAQ---QIVAE---MLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVD 436
Query: 108 VIAEF 112
I
Sbjct: 437 TILNL 441
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,309
Number of extensions: 22716
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 8
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)