Query psy2495
Match_columns 391
No_of_seqs 191 out of 1479
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:40:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819|consensus 100.0 6.6E-89 1.4E-93 646.6 29.9 314 24-371 6-320 (321)
2 KOG0819|consensus 100.0 3.6E-57 7.9E-62 429.8 20.4 241 106-382 16-266 (321)
3 PF00191 Annexin: Annexin; In 99.7 1.2E-16 2.6E-21 120.9 7.4 66 38-103 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.6 3.4E-16 7.4E-21 118.4 7.3 66 110-175 1-66 (66)
5 smart00335 ANX Annexin repeats 99.4 9.1E-13 2E-17 95.3 6.1 53 51-103 1-53 (53)
6 smart00335 ANX Annexin repeats 99.3 1.5E-12 3.2E-17 94.2 5.5 53 123-175 1-53 (53)
7 PF14003 YlbE: YlbE-like prote 40.3 35 0.00075 25.7 3.0 48 320-368 13-61 (65)
8 PF00249 Myb_DNA-binding: Myb- 31.4 1.6E+02 0.0036 19.9 5.3 35 37-71 6-42 (48)
9 COG5118 BDP1 Transcription ini 27.9 1.5E+02 0.0033 30.0 6.1 42 34-78 367-408 (507)
10 PF14003 YlbE: YlbE-like prote 25.8 90 0.0019 23.5 3.1 32 216-247 16-47 (65)
11 PHA01794 hypothetical protein 25.2 4.4E+02 0.0095 22.6 8.7 24 82-105 74-99 (134)
12 PHA02148 hypothetical protein 25.1 83 0.0018 25.3 3.0 43 25-67 20-63 (110)
13 smart00717 SANT SANT SWI3, AD 24.6 1.9E+02 0.0041 18.6 4.6 38 34-72 4-42 (49)
14 COG5173 SEC6 Exocyst complex s 24.1 8.7E+02 0.019 26.2 10.9 189 128-367 295-495 (742)
15 cd00171 Sec7 Sec7 domain; Doma 23.6 2.5E+02 0.0054 25.3 6.4 54 33-90 31-87 (185)
16 COG5173 SEC6 Exocyst complex s 23.2 6.5E+02 0.014 27.1 9.8 49 198-250 430-478 (742)
17 COG5118 BDP1 Transcription ini 21.0 1.7E+02 0.0037 29.7 4.9 58 193-251 371-428 (507)
18 PF13766 ECH_C: 2-enoyl-CoA Hy 20.3 2.3E+02 0.005 23.6 5.1 66 39-105 17-92 (118)
19 PF11264 ThylakoidFormat: Thyl 20.2 4.3E+02 0.0094 24.7 7.3 50 234-287 99-150 (216)
No 1
>KOG0819|consensus
Probab=100.00 E-value=6.6e-89 Score=646.64 Aligned_cols=314 Identities=51% Similarity=0.757 Sum_probs=310.6
Q ss_pred CCCeecCCCCCChHHHHHHHHHHHhcCCCChHHHHHHhhCCCHHHHHHHHHHHHHhhcccHHHHHhhhhCCCHHHHHHHh
Q psy2495 24 CLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103 (391)
Q Consensus 24 ~~~ti~~~~~fd~~~Da~~L~~A~~g~gtde~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~l~~e~sG~f~~~l~~l 103 (391)
..||++|.++|||..||+.|++||+||||||++||+||++||+.|||.|+.+|+..||+||.++|++|+||+|++++++|
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhhcCCCCChhhHHHHhcCCCHHHHHHHHHHHHHhcCcchHHhhhhhccchhHHHHHHHhhcCCCCC
Q psy2495 104 MTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDED 183 (391)
Q Consensus 104 ~~~p~~~dA~~L~~A~kg~gtde~~LieIL~~rs~~q~~~Ik~aY~~~yg~~L~~dI~~e~sG~~~~lll~ll~~~R~e~ 183 (391)
+.||+++||..|++||||+|||+++||||+|+|||.|+++|+++|+..|+++|++||.+++||+|+++|+.|++|.|+|+
T Consensus 86 ~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~ 165 (321)
T KOG0819|consen 86 MKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEG 165 (321)
T ss_pred cCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHhhhhcCCCChhHHHHHHhhCCHHHHHHHHHHHHHHhcccHHHHHhhcCCchHHHHHHHHhhc-
Q psy2495 184 DEVDADAARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKM- 262 (391)
Q Consensus 184 ~~vd~~~~~~DA~~L~~A~~~~~gtde~~lieIl~~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~~Ll~ll~~- 262 (391)
+.||...|..||+.|++|+++++|||+..|+.||++||..||++++++|++.+|+++++.|+.+++|+++++|+++++|
T Consensus 166 ~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~ 245 (321)
T KOG0819|consen 166 DRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCI 245 (321)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccchhhhhhhccchhhhccCCCCCCcccCHHHHHHHHHHHHHhccccCCCCccchhhhhhccCHHHHHHHHHHHHH
Q psy2495 263 KMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEK 342 (391)
Q Consensus 263 ~~~~~~~~~~A~~l~~~~~~~~~~~R~~~~~vd~~~v~~da~~l~~~a~~~~gtde~~liril~~rs~~~l~~I~~~Y~~ 342 (391)
+|||. |||++| +.||+|.|||+.+||||+|+||++||..|+.+|++
T Consensus 246 ~n~~~---yFA~~L-------------------------------~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~ 291 (321)
T KOG0819|consen 246 RNPPA---YFAERL-------------------------------RKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQR 291 (321)
T ss_pred cCHHH---HHHHHH-------------------------------HHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHH
Confidence 99999 999999 99999999999999999999999999999999999
Q ss_pred HhCccHHHHHHhcCcHHHHHHHHHHhhcC
Q psy2495 343 LAGHDIEEAIKSETSGSLEDGYLSIDWNN 371 (391)
Q Consensus 343 ~yg~~L~~~I~~e~sGd~~~~Ll~l~~~~ 371 (391)
+||+||.++|+++|||||+++|++||+..
T Consensus 292 ~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~ 320 (321)
T KOG0819|consen 292 KYGKSLYSAIKGDTSGDYKKALLALLGGD 320 (321)
T ss_pred HhCccHHHHHhhhccchHHHHHHHHhCCC
Confidence 99999999999999999999999999864
No 2
>KOG0819|consensus
Probab=100.00 E-value=3.6e-57 Score=429.82 Aligned_cols=241 Identities=42% Similarity=0.590 Sum_probs=231.3
Q ss_pred CChHHHHHHHHHhhcCCCCChhhHHHHhcCCCHHHHHHHHHHHHHhcCcchHHhhhhhccchhHHHHHHHhhcCCCCCcc
Q psy2495 106 PLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDE 185 (391)
Q Consensus 106 ~p~~~dA~~L~~A~kg~gtde~~LieIL~~rs~~q~~~Ik~aY~~~yg~~L~~dI~~e~sG~~~~lll~ll~~~R~e~~~ 185 (391)
+.|..||+.|++||+|+||||++||+||+.|||.|++.|+++|+.+||+||.+++++++||+|++++++|+.+
T Consensus 16 f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~------- 88 (321)
T KOG0819|consen 16 FDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKP------- 88 (321)
T ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCC-------
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cchhhhHHHHHHHHHhhhhcCCCChhHHHHHHhhCCHHHHHHHHHHHHHHhcccHHHHHhhcCCchHHHHHHHHhhccCC
Q psy2495 186 VDADAARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMP 265 (391)
Q Consensus 186 vd~~~~~~DA~~L~~A~~~~~gtde~~lieIl~~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~~Ll~ll~~~~~ 265 (391)
|+++||+.|++|++ ++|||++++|||+|+|||.||++|+++|+..|+++|+++|.+++||+|+++|+.++
T Consensus 89 ----p~~~DA~~l~~amk-g~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~----- 158 (321)
T KOG0819|consen 89 ----PAEYDAKELKKAMK-GLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLV----- 158 (321)
T ss_pred ----HHHhHHHHHHHHHh-ccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHH-----
Confidence 58999999999985 58999999999999999999999999999999999999999999999999999998
Q ss_pred cccchhhhhhhccchhhhccCCCCCCcccCHHHHHHHHHHHHHhccccCCCCccchhhhhhccCHHHHHHHHHHHHHHhC
Q psy2495 266 EKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAG 345 (391)
Q Consensus 266 ~~~~~~~A~~l~~~~~~~~~~~R~~~~~vd~~~v~~da~~l~~~a~~~~gtde~~liril~~rs~~~l~~I~~~Y~~~yg 345 (391)
+|.|+|+..||..+|+.||+.|+.+..+.+|||+..|++||++||.+||+.++++|++.+|
T Consensus 159 -------------------~~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g 219 (321)
T KOG0819|consen 159 -------------------QGNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISG 219 (321)
T ss_pred -------------------hcCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 5789998899999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhcCcHHHHHHHHHHhhcCC----------CCCCCChhhh
Q psy2495 346 HDIEEAIKSETSGSLEDGYLSIDWNNG----------GDATEGTGAV 382 (391)
Q Consensus 346 ~~L~~~I~~e~sGd~~~~Ll~l~~~~~----------~~~~~g~~~~ 382 (391)
++++++|++|++|||+++|++++.|.. +++|+|+||.
T Consensus 220 ~diek~I~~e~~gd~~~~llaiv~c~~n~~~yFA~~L~~amkg~GTd 266 (321)
T KOG0819|consen 220 KDIEKSIKEEFSGDFEKLLLAIVKCIRNPPAYFAERLRKAMKGLGTD 266 (321)
T ss_pred hhHHHHHhhccCchHHHHHHHHHHHHcCHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999988 5668999975
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.67 E-value=1.2e-16 Score=120.92 Aligned_cols=66 Identities=48% Similarity=0.786 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHhhCCCHHHHHHHHHHHHHhhcccHHHHHhhhhCCCHHHHHHHh
Q psy2495 38 GDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103 (391)
Q Consensus 38 ~Da~~L~~A~~g~gtde~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~l~~e~sG~f~~~l~~l 103 (391)
.||+.|++|++|||+||..||+||++||+.|+++|.++|+..||++|++.|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.65 E-value=3.4e-16 Score=118.43 Aligned_cols=66 Identities=47% Similarity=0.739 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHhcCCCHHHHHHHHHHHHHhcCcchHHhhhhhccchhHHHHHHH
Q psy2495 110 LYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSL 175 (391)
Q Consensus 110 ~dA~~L~~A~kg~gtde~~LieIL~~rs~~q~~~Ik~aY~~~yg~~L~~dI~~e~sG~~~~lll~l 175 (391)
+||+.|++|++|+|+|+..+++||++||+.|+++|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999876
No 5
>smart00335 ANX Annexin repeats.
Probab=99.38 E-value=9.1e-13 Score=95.31 Aligned_cols=53 Identities=55% Similarity=0.854 Sum_probs=51.3
Q ss_pred CCChHHHHHHhhCCCHHHHHHHHHHHHHhhcccHHHHHhhhhCCCHHHHHHHh
Q psy2495 51 GTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103 (391)
Q Consensus 51 gtde~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~l~~e~sG~f~~~l~~l 103 (391)
||||+.|++|+++||+.||+.|+.+|++.||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999998864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.34 E-value=1.5e-12 Score=94.24 Aligned_cols=53 Identities=51% Similarity=0.840 Sum_probs=51.2
Q ss_pred CCChhhHHHHhcCCCHHHHHHHHHHHHHhcCcchHHhhhhhccchhHHHHHHH
Q psy2495 123 GTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSL 175 (391)
Q Consensus 123 gtde~~LieIL~~rs~~q~~~Ik~aY~~~yg~~L~~dI~~e~sG~~~~lll~l 175 (391)
|||+..|++|+++||+.|++.|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998865
No 7
>PF14003 YlbE: YlbE-like protein
Probab=40.33 E-value=35 Score=25.71 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=35.7
Q ss_pred chhhhhhccCHHHHHHHHHHHHHHhCccHHHHHHhcCcH-HHHHHHHHHh
Q psy2495 320 TFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSG-SLEDGYLSID 368 (391)
Q Consensus 320 ~liril~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG-d~~~~Ll~l~ 368 (391)
.+-|+|+ |.+.++...-.++...|++++.+.|++-..+ .....++.++
T Consensus 13 ~WYR~Ls-R~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 13 IWYRILS-RNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 4456665 8899999999999999999999999864433 3444444444
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=31.44 E-value=1.6e+02 Score=19.91 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCCC-hHHHHHHhh-CCCHHHHHH
Q psy2495 37 NGDAEVLRAAMKGFGTD-EQPIIDVLA-KRSNQQRQE 71 (391)
Q Consensus 37 ~~Da~~L~~A~~g~gtd-e~~li~IL~-~rs~~qr~~ 71 (391)
.++-+.|.+|++..|.+ =..|-.-+. +||..|...
T Consensus 6 ~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 6 EEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 34567889999999998 678888888 899988653
No 9
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=27.89 E-value=1.5e+02 Score=30.01 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHhhCCCHHHHHHHHHHHHH
Q psy2495 34 FDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKT 78 (391)
Q Consensus 34 fd~~~Da~~L~~A~~g~gtde~~li~IL~~rs~~qr~~I~~~Y~~ 78 (391)
-....|.+..|+|+.-||||-..|-.+..+|+..|. ...|..
T Consensus 367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqI---KaKfi~ 408 (507)
T COG5118 367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQI---KAKFIK 408 (507)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHH---HHHHHH
Confidence 466789999999999999999999999888876554 444443
No 10
>PF14003 YlbE: YlbE-like protein
Probab=25.78 E-value=90 Score=23.51 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHhhCCHHHHHHHHHHHHHHhcccHHHHHhhc
Q psy2495 216 ILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSE 247 (391)
Q Consensus 216 Il~~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e 247 (391)
...+|.|+++.+.-.++...|++++-+.|++-
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~ 47 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKF 47 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44569999999999999999999999998873
No 11
>PHA01794 hypothetical protein
Probab=25.24 E-value=4.4e+02 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=17.8
Q ss_pred ccHHHHHhhhh--CCCHHHHHHHhcC
Q psy2495 82 KDLIDDLKSEL--GGNFEDAIVALMT 105 (391)
Q Consensus 82 ~~L~~~l~~e~--sG~f~~~l~~l~~ 105 (391)
..|.+.|+.|. ||-|+..+.-|+.
T Consensus 74 e~lF~eleqEm~~SGFF~~ki~kyie 99 (134)
T PHA01794 74 EGLFAELEKEMVDSGFFRAKIKKYIE 99 (134)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45778888876 7888888776654
No 12
>PHA02148 hypothetical protein
Probab=25.06 E-value=83 Score=25.28 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=35.8
Q ss_pred CCeecCCCCCChHHHHHHHHHHHh-cCCCChHHHHHHhhCCCHH
Q psy2495 25 LPTVVPADPFDPNGDAEVLRAAMK-GFGTDEQPIIDVLAKRSNQ 67 (391)
Q Consensus 25 ~~ti~~~~~fd~~~Da~~L~~A~~-g~gtde~~li~IL~~rs~~ 67 (391)
.|||+|.+.-|....|-.|.+-++ .+.+|...+=+|-.+|.|+
T Consensus 20 ~P~v~~~~i~~~k~~A~E~FK~iE~RIA~D~~~L~~~A~~R~NE 63 (110)
T PHA02148 20 EPTVTPLPISDLKVEAFELFKKIEERIAHDQTRLEELAKSRENE 63 (110)
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 599998888888888877877775 6789999999999988765
No 13
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=24.57 E-value=1.9e+02 Score=18.60 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHhcCC-CChHHHHHHhhCCCHHHHHHH
Q psy2495 34 FDPNGDAEVLRAAMKGFG-TDEQPIIDVLAKRSNQQRQEI 72 (391)
Q Consensus 34 fd~~~Da~~L~~A~~g~g-tde~~li~IL~~rs~~qr~~I 72 (391)
+.++ +-+.|..++...| .+=..|.+.+.+||+.|...-
T Consensus 4 Wt~~-E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 4 WTEE-EDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred CCHH-HHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 4444 4457888888888 788888899988999877543
No 14
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=24.11 E-value=8.7e+02 Score=26.25 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=93.2
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHhcCcchHHhhhhhccchhHH-HHHHHhhcCCCCCcccchhhhHHHHHHHHHhhhhcC
Q psy2495 128 ALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKR-LLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESF 206 (391)
Q Consensus 128 ~LieIL~~rs~~q~~~Ik~aY~~~yg~~L~~dI~~e~sG~~~~-lll~ll~~~R~e~~~vd~~~~~~DA~~L~~A~~~~~ 206 (391)
.+-+.+....|..+ .|...|...|.+-|...+.++.+-.... .+++++.-.|.- .+..+.++-....+.++++
T Consensus 295 ~i~e~i~~~~pp~~-NI~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y-----~~t~e~~f~f~~dev~~~l 368 (742)
T COG5173 295 FIRENISLSFPPFD-NILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNY-----YNTIESKFNFIADEVGGRL 368 (742)
T ss_pred HHHHHccccCCchH-HHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH-----HHHHHHhCCccHHHhcccc
Confidence 45566666666665 4667888888888888888876544332 334555432210 0123444444445555555
Q ss_pred CCChhHHHHHHhhCCHHHHHHHHHHHHHHhcccHHHHHhhcCCchHHHHHHHHhhc-cCCcccchhhhhhhccchhhhcc
Q psy2495 207 GTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKM-KMPEKLKTPFCNRLGVASFRILD 285 (391)
Q Consensus 207 gtde~~lieIl~~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~~~~~Ll~ll~~-~~~~~~~~~~A~~l~~~~~~~~~ 285 (391)
+.+++. .+.+.|-+....-|. |++|++.++=+-.... ..||.
T Consensus 369 ~d~e~g--------------~L~~~Yt~l~~~Kl~-----EWv~nl~~~evd~F~~R~~ep~------------------ 411 (742)
T COG5173 369 LDNETG--------------ELLEKYTKLAQEKLK-----EWVMNLTRIEVDKFYARNEEPS------------------ 411 (742)
T ss_pred cCCcch--------------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCCC------------------
Confidence 544431 122334443333222 3444444433332222 22222
Q ss_pred CCCCCCc-ccCHHHHHHHHHHHHHhccc-cCCCCccchhhhhhccCHHHHHHHHHHHHHHhCccHHHHHHhcCc------
Q psy2495 286 GNRDEDD-EVDADAARADAQKLLDAGVE-SFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETS------ 357 (391)
Q Consensus 286 ~~R~~~~-~vd~~~v~~da~~l~~~a~~-~~gtde~~liril~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~s------ 357 (391)
|++++ .+-++.+.. -+++ .+-+. -.+|+.+.++-+++. ++..+...|++.....+.+.+++.++
T Consensus 412 --~Dsdg~l~l~Gt~~~-fQmi-tqQ~e~ia~tn~sdvvgiV~~----~i~~~~tk~q~~wks~l~ee~~kq~~~npEs~ 483 (742)
T COG5173 412 --RDSDGKLVLPGTVSL-FQMI-TQQLEPIAFTNRSDVVGIVFA----HITRTITKYQEIWKSNLVEEMDKQFKSNPESS 483 (742)
T ss_pred --cCCCcCccCccHHHH-HHHH-HHHhhhhhcCCccchhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 33222 121121111 1111 11122 126887777766664 56667777777777777777776554
Q ss_pred --HHHHHHHHHH
Q psy2495 358 --GSLEDGYLSI 367 (391)
Q Consensus 358 --Gd~~~~Ll~l 367 (391)
|-+...|+++
T Consensus 484 ~p~Gl~eyliav 495 (742)
T COG5173 484 SPAGLEEYLIAV 495 (742)
T ss_pred CcchHHHHHHHH
Confidence 4456666644
No 15
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=23.55 E-value=2.5e+02 Score=25.32 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHhhCCCHHHHHHHHHHHHHhh---cccHHHHHhh
Q psy2495 33 PFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLF---GKDLIDDLKS 90 (391)
Q Consensus 33 ~fd~~~Da~~L~~A~~g~gtde~~li~IL~~rs~~qr~~I~~~Y~~~~---g~~L~~~l~~ 90 (391)
.-||..-|+-|+.. -|.|...|-+.|++..+ -...|..+|-..+ |.++.+.|+.
T Consensus 31 ~~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~~-~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 31 DDSPKEIAKFLYET---EGLNKKAIGEYLGENNE-FNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred CCCHHHHHHHHHhC---CCCCHHHHHHHHcCCch-HHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 34777778888876 56899999999999874 4578888899886 7777777755
No 16
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=23.17 E-value=6.5e+02 Score=27.14 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHhhhhcCCCChhHHHHHHhhCCHHHHHHHHHHHHHHhcccHHHHHhhcCCc
Q psy2495 198 LLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSG 250 (391)
Q Consensus 198 L~~A~~~~~gtde~~lieIl~~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG 250 (391)
+...++--.+|+.+.++-|+. +|+-.+-..|++.....|.+.|++.++|
T Consensus 430 itqQ~e~ia~tn~sdvvgiV~----~~i~~~~tk~q~~wks~l~ee~~kq~~~ 478 (742)
T COG5173 430 ITQQLEPIAFTNRSDVVGIVF----AHITRTITKYQEIWKSNLVEEMDKQFKS 478 (742)
T ss_pred HHHHhhhhhcCCccchhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333566655544443 5677777888888877777777765543
No 17
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=21.02 E-value=1.7e+02 Score=29.71 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhhcCCCChhHHHHHHhhCCHHHHHHHHHHHHHHhcccHHHHHhhcCCch
Q psy2495 193 ADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGS 251 (391)
Q Consensus 193 ~DA~~L~~A~~~~~gtde~~lieIl~~rs~~~l~~I~~~Y~~~yg~sL~~~I~~e~sG~ 251 (391)
.|....|+|+. -||||...+-.++-+|+..|+.+=+..=++..-.-+.++++....-+
T Consensus 371 ~e~ekFYKALs-~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d 428 (507)
T COG5118 371 KEIEKFYKALS-IWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFD 428 (507)
T ss_pred HHHHHHHHHHH-HhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCC
Confidence 46777899985 59999999999999999988876555545555566666666554433
No 18
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=20.27 E-value=2.3e+02 Score=23.59 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCCh--HHHHHHhhCCCHHHHHHHHHHHHHhhcccHHHHHhhhh--------CCCHHHHHHHhcC
Q psy2495 39 DAEVLRAAMKGFGTDE--QPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSEL--------GGNFEDAIVALMT 105 (391)
Q Consensus 39 Da~~L~~A~~g~gtde--~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~l~~e~--------sG~f~~~l~~l~~ 105 (391)
+.+.+.++++.-| ++ ...++.|.++||--+....+.++.-.+.+|.+.+..|+ .|+|...+.+.+.
T Consensus 17 s~~eI~~~L~~~~-~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI 92 (118)
T PF13766_consen 17 SVEEIIEALEADG-DEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI 92 (118)
T ss_dssp SHHHHHHHHHHHS--HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred CHHHHHHHHHccC-cHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 4455555555422 22 56689999999999999999999999999999999886 4888888877765
No 19
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=20.20 E-value=4.3e+02 Score=24.72 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHhcccHHHHHhhcCCchHHHHHHHHhhc--cCCcccchhhhhhhccchhhhccCC
Q psy2495 234 KLAGHDIEEAIKSETSGSLEDGYLSIGKM--KMPEKLKTPFCNRLGVASFRILDGN 287 (391)
Q Consensus 234 ~~yg~sL~~~I~~e~sG~~~~~Ll~ll~~--~~~~~~~~~~A~~l~~~~~~~~~~~ 287 (391)
.....++.+.+... .+.-...|..++.. .|+.- +|...+.+-++++|+-.
T Consensus 99 ~~s~~~l~~~l~~~-~~~~~~~l~~~~~~ia~~~~f---~YSRl~AIGL~~LLe~a 150 (216)
T PF11264_consen 99 GKSIEDLLSWLSQK-GGEGDNPLAAILQAIASNPKF---KYSRLFAIGLFRLLELA 150 (216)
T ss_pred cCCHHHHHHHHhcc-ccccchHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHhc
Confidence 33445555555443 33333444444443 23222 45555545557777554
Done!