RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2495
(391 letters)
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 326 bits (837), Expect = e-111
Identities = 137/342 (40%), Positives = 186/342 (54%), Gaps = 33/342 (9%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLI 85
TV P F+ DAE LR AMKG GTDE+ I +LA RSN QRQ+I + TLFGK L
Sbjct: 4 GTVKPHASFNSREDAETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLE 63
Query: 86 DDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
D+LKSEL GN+E A +AL+ E A++LH AM G+GTD+ AL++IL T SN I I
Sbjct: 64 DELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIK 123
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVES 205
++ +Y+ LE ++ SE SG F+RLLVS++QG R ED+ V+A A DA + AG
Sbjct: 124 AAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQ 183
Query: 206 FGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMP 265
GTDES FNA+L RSY QL Q+F Y K++ I +AI++E SG +++G L+I K
Sbjct: 184 IGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIENEFSGDIKNGLLAIVKSVEN 243
Query: 266 EKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAIL 325
A++L A GT + T IL
Sbjct: 244 --------------------------------RFAYFAERLHHAMKG-LGTSDKTLIRIL 270
Query: 326 VERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
V RS L + + ++ + G + E I + SG +D L I
Sbjct: 271 VSRSEIDLANIKETFQAMYGKSLYEFIADDCSGDYKDLLLQI 312
Score = 121 bits (304), Expect = 1e-31
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDL 88
P + DA + A +G GTDE VLA RS Q +I + + K ++ +
Sbjct: 163 PVNAAHAAEDAAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAI 222
Query: 89 KSELGGNFEDAIVAL---MTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
++E G+ ++ ++A+ + +A+ LH AM G+GT ++ L+ IL + S + I
Sbjct: 223 ENEFSGDIKNGLLAIVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIK 282
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLV 176
E ++ MY SL + + + SG +K LL+ +
Sbjct: 283 ETFQAMYGKSLYEFIADDCSGDYKDLLLQIT 313
Score = 62.6 bits (152), Expect = 3e-11
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 299 ARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSG 358
+R DA+ L A ++ GTDE + IL RS Q +Q+ Y L G +E+ +KSE SG
Sbjct: 14 SREDAETLRKA-MKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSG 72
Query: 359 SLEDGYLSIDWNNGG-DATEGTGA 381
+ E L++ A + A
Sbjct: 73 NYEAAALALLRKPDEFLAEQLHAA 96
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Length = 327
Score = 325 bits (835), Expect = e-110
Identities = 142/349 (40%), Positives = 192/349 (55%), Gaps = 34/349 (9%)
Query: 20 LFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTL 79
+Q TV + F+P+ DAE L AMKG GT+EQ IIDVL KRSN QRQ+IA +FK
Sbjct: 7 WIEQEGVTVKSSSHFNPDPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQ 66
Query: 80 FGKDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNY 139
FGKDL + LKSEL G FE IVALM P AKELHDAM G+GT E ++EIL++ +
Sbjct: 67 FGKDLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKN 126
Query: 140 GIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDE-VDADAARADAQKL 198
+R I + YE+ Y SSLE+D++++ SG +R+LV L+QG+RD+ VD A DAQ L
Sbjct: 127 QLREIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQDL 186
Query: 199 LDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLS 258
AG + GTDE F IL RS L +VF+ YEK+A IE++IKSET GSLE+ L+
Sbjct: 187 YAAGEKIRGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSETHGSLEEAMLT 246
Query: 259 IGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDE 318
+ K A + L ++ GT +
Sbjct: 247 VVKCTQN--------------------------------LHSYFA-ERLYYAMKGAGTRD 273
Query: 319 STFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
T +V RS L + ++K+ G + I +TSG ++ LS+
Sbjct: 274 GTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSMIMEDTSGDYKNALLSL 322
Score = 124 bits (313), Expect = 6e-33
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 11 SSLGSTYRCLFQQCL-----PTVVPADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKR 64
+ + L DP DA+ L AA + GTDE I +L R
Sbjct: 149 ADTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEKIRGTDEMKFITILCTR 208
Query: 65 SNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDA---IVALMTPLPELYAKELHDAMSG 121
S + + ++ + K + D +KSE G+ E+A +V L +A+ L+ AM G
Sbjct: 209 SATHLLRVFEEYEKIANKSIEDSIKSETHGSLEEAMLTVVKCTQNLHSYFAERLYYAMKG 268
Query: 122 VGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGN 179
GT + L+ + + S + I ++KMY +L + + SG +K L+SLV +
Sbjct: 269 AGTRDGTLIRNIVSRSEIDLNLIKCHFKKMYGKTLSSMIMEDTSGDYKNALLSLVGSD 326
Score = 71.5 bits (175), Expect = 5e-14
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 1 MGEQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIID 59
E+ + + S+ S ++ + TVV + AE L AMKG GT + +I
Sbjct: 219 EYEKIANKSIEDSIKSETHGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGAGTRDGTLIR 278
Query: 60 VLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103
+ RS I FK ++GK L + + G++++A+++L
Sbjct: 279 NIVSRSEIDLNLIKCHFKKMYGKTLSSMIMEDTSGDYKNALLSL 322
Score = 63.4 bits (154), Expect = 2e-11
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 299 ARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSG 358
DA+ L A ++ GT+E +L +RS Q +Q+ K+++ G D+ E +KSE SG
Sbjct: 23 PDPDAETLYKA-MKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSG 81
Query: 359 SLEDGYLSIDWN 370
E +++ +
Sbjct: 82 KFERLIVALMYP 93
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 321 bits (824), Expect = e-109
Identities = 129/342 (37%), Positives = 187/342 (54%), Gaps = 33/342 (9%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLI 85
TV F P+ DAE ++ A++G GTDE+ +I +L +RSN QRQ I ++ +GK+L
Sbjct: 10 GTVRDYPDFSPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELK 69
Query: 86 DDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
DDLK +L G+FE +VAL+TP AK+L +M G GT+E+AL+EIL+T ++ ++ I+
Sbjct: 70 DDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDIS 129
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVES 205
+ Y +Y+ SL DD+ SE SG F++ L++L G RDE +VD A+ DAQ L AG
Sbjct: 130 QAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKAGENR 189
Query: 206 FGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMP 265
+GTDE F IL RS+ QL+ F Y ++ DI ++IK E SG ED L+I
Sbjct: 190 WGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVR- 248
Query: 266 EKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAIL 325
+ A++L A ++ GTDE T N I+
Sbjct: 249 -------------------------------NTPAFLAERLHRA-LKGIGTDEFTLNRIM 276
Query: 326 VERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
V RS L + ++K G+ + AIKS+TSG E L I
Sbjct: 277 VSRSEIDLLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKI 318
Score = 125 bits (314), Expect = 4e-33
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 19 CLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADAFK 77
L + D DA++L A + +GTDE ++L RS Q + D ++
Sbjct: 158 TLADGRRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYR 217
Query: 78 TLFGKDLIDDLKSELGGNFED---AIVALMTPLPELYAKELHDAMSGVGTDEEALVEILS 134
+ KD++D +K EL G+FED AIV + P A+ LH A+ G+GTDE L I+
Sbjct: 218 NISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMV 277
Query: 135 TLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGN 179
+ S + I ++K Y SL +KS+ SG ++ L+ + G+
Sbjct: 278 SRSEIDLLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKICGGD 322
Score = 68.8 bits (168), Expect = 3e-13
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 3 EQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVL 61
+ S+ F+ L +V P AE L A+KG GTDE + ++
Sbjct: 217 RNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIM 276
Query: 62 AKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103
RS +I FK +G L +KS+ G++E ++ +
Sbjct: 277 VSRSEIDLLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKI 318
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 321 bits (824), Expect = e-109
Identities = 132/342 (38%), Positives = 186/342 (54%), Gaps = 33/342 (9%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLI 85
TV A F+ DA+VLR AMKG GTDE II VLA R+ QRQEI A+K+ G+DL+
Sbjct: 9 GTVKAASGFNATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLL 68
Query: 86 DDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
+DLKSEL NFE I+ +MTP +EL AM G GTDE L+EIL++ + IR I
Sbjct: 69 EDLKSELSSNFEQVILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRIN 128
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVES 205
+ Y++ Y SLE+D+ S+ S F+R+LVSL G RDE + +D + DAQ L +AG +
Sbjct: 129 QTYQQQYGRSLEEDICSDTSFMFQRVLVSLTAGGRDEGNYLDDALVKQDAQDLYEAGEKR 188
Query: 206 FGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMP 265
+GTDE F +IL R+ L VF Y++++ DIE++IKSETSGS ED L+I K
Sbjct: 189 WGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIVKCMR- 247
Query: 266 EKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAIL 325
+ A++L + GTD+ST ++
Sbjct: 248 -------------------------------NKPAYFAERLYKSMKG-LGTDDSTLIRVM 275
Query: 326 VERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
V R+ + + +++L G + IK +TSG L +
Sbjct: 276 VSRAEIDMLDIRANFKRLYGKSLYSFIKGDTSGDYRKVLLIL 317
Score = 120 bits (303), Expect = 2e-31
Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 17 YRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADA 75
L D DA+ L A + +GTDE + +L R+ + D
Sbjct: 155 LVSLTAGGRDEGNYLDDALVKQDAQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDE 214
Query: 76 FKTLFGKDLIDDLKSELGGNFEDAIVALMTPL---PELYAKELHDAMSGVGTDEEALVEI 132
+K + KD+ +KSE G+FEDA++A++ + P +A+ L+ +M G+GTD+ L+ +
Sbjct: 215 YKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKPAYFAERLYKSMKGLGTDDSTLIRV 274
Query: 133 LSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGN 179
+ + + + I ++++Y SL +K + SG ++++L+ L G+
Sbjct: 275 MVSRAEIDMLDIRANFKRLYGKSLYSFIKGDTSGDYRKVLLILCGGD 321
Score = 93.1 bits (231), Expect = 2e-21
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 191 ARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSG 250
A DAQ L A ++ GTDE +L R+ Q +++ AY+ G D+ E +KSE S
Sbjct: 19 ATEDAQVLRKA-MKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSS 77
Query: 251 SLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAG 310
+ E L + D Q+L A
Sbjct: 78 NFEQVILGMMT-----------------------------------PTVLYDVQELRRA- 101
Query: 311 VESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIDWN 370
++ GTDE IL R+ +++R++ + Y++ G +EE I S+TS + +S+
Sbjct: 102 MKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSLTAG 161
Query: 371 N 371
Sbjct: 162 G 162
Score = 66.5 bits (162), Expect = 2e-12
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 1 MGEQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIID 59
++ + + S+ S F+ L +V P AE L +MKG GTD+ +I
Sbjct: 214 EYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKPAYFAERLYKSMKGLGTDDSTLIR 273
Query: 60 VLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103
V+ R+ +I FK L+GK L +K + G++ ++ L
Sbjct: 274 VMVSRAEIDMLDIRANFKRLYGKSLYSFIKGDTSGDYRKVLLIL 317
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 322 bits (826), Expect = e-109
Identities = 111/359 (30%), Positives = 170/359 (47%), Gaps = 33/359 (9%)
Query: 9 FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQ 68
+ T + V P F+P+ D E L A+ G DE II++L KR+N Q
Sbjct: 17 EEQEYIKTVKGSKGGPGSAVSPYPTFNPSSDVEALHKAITVKGVDEATIIEILTKRTNAQ 76
Query: 69 RQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEA 128
RQ+I A+ GK L + LK L G+ E+ +AL+ + A EL AM G+GTDE+
Sbjct: 77 RQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAMKGLGTDEDT 136
Query: 129 LVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDA 188
L EIL++ +N IR I VY++ + L D+ S+ SG +++ L+SL +G+R ED ++
Sbjct: 137 LNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAIND 196
Query: 189 DAARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSET 248
D A DA+ L +AG GTD + F IL RSY LR+VF+ Y K + HD+ + + E
Sbjct: 197 DLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLEL 256
Query: 249 SGSLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLD 308
G +E+ + K + + L
Sbjct: 257 KGDIENCLTVVVKC-----ATSKPMFF----------------------------AEKLH 283
Query: 309 AGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
++ GT T I+V RS + + Y+KL G + +AI ET G E +++
Sbjct: 284 QAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQKLYGISLCQAILDETKGDYEKILVAL 342
Score = 195 bits (497), Expect = 2e-59
Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 37/295 (12%)
Query: 73 ADAFKTLFGKDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEI 132
F ++ I +K GG A+ T P + LH A++ G DE ++EI
Sbjct: 10 QAWFIDNEEQEYIKTVKGSKGGP-GSAVSPYPTFNPSSDVEALHKAITVKGVDEATIIEI 68
Query: 133 LSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAAR 192
L+ +N + I Y + L++ LK +G + + ++L++ A+
Sbjct: 69 LTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLK-----------TPAQ 117
Query: 193 ADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSL 252
DA +L A ++ GTDE T N IL R+ +++R++ + Y++ D+ + I S+TSG
Sbjct: 118 FDADELRAA-MKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDY 176
Query: 253 EDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVE 312
+ LS+ G+R ED ++ D A DA+ L +AG
Sbjct: 177 QKALLSL------------------------AKGDRSEDLAINDDLADTDARALYEAGER 212
Query: 313 SFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
GTD + F IL RSY LR+VF+ Y K + HD+ + + E G +E+ +
Sbjct: 213 RKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLELKGDIENCLTVV 267
Score = 123 bits (309), Expect = 5e-32
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDL 88
+ + DA L A + GTD I +L RS + + + D+ L
Sbjct: 193 AINDDLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVL 252
Query: 89 KSELGGNFEDAIVAL---MTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
EL G+ E+ + + T P +A++LH AM G+GT + L+ I+ + S + I
Sbjct: 253 DLELKGDIENCLTVVVKCATSKPMFFAEKLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIK 312
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGN 179
Y+K+Y SL + E G ++++LV+L G+
Sbjct: 313 ACYQKLYGISLCQAILDETKGDYEKILVALCGGD 346
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 316 bits (812), Expect = e-107
Identities = 136/343 (39%), Positives = 177/343 (51%), Gaps = 33/343 (9%)
Query: 25 LPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDL 84
TV PFD DAE LR AMKG GTDE+ I+ +L R+N QRQEIA AFKTLFG+DL
Sbjct: 5 RGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDL 64
Query: 85 IDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTI 144
+DDLKSEL G FE +V+LM P A L A+ G GT+E+ L EIL++ + ++ I
Sbjct: 65 VDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNI 124
Query: 145 AEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVE 204
+VY + YE++LED + E SG F+RLLV L+Q NRD D VD DAQ L AG
Sbjct: 125 KQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGEL 184
Query: 205 SFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKM 264
+GTDE TF IL RS LR+VF Y ++G IEE I ETSG LE L++ K
Sbjct: 185 KWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIR 244
Query: 265 PEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAI 324
A+ L + GTD+ T +
Sbjct: 245 S--------------------------------VPAYFAETLYYSMKG-AGTDDDTLIRV 271
Query: 325 LVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
+V RS L + + K + + I+ +TSG L +
Sbjct: 272 MVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLL 314
Score = 126 bits (317), Expect = 2e-33
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 4/167 (2%)
Query: 19 CLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADAFK 77
L Q D DA+VL A + +GTDE+ I +L RS + + D +
Sbjct: 154 VLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYM 213
Query: 78 TLFGKDLIDDLKSELGGNFED---AIVALMTPLPELYAKELHDAMSGVGTDEEALVEILS 134
T+ G + + + E G+ E A+V + +P +A+ L+ +M G GTD++ L+ ++
Sbjct: 214 TISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMV 273
Query: 135 TLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRD 181
+ S + I + K + SL ++ + SG +++ L+ L G+ +
Sbjct: 274 SRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGGDDE 320
Score = 68.5 bits (167), Expect = 5e-13
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 1 MGEQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIID 59
+ ++ ++ L VV P AE L +MKG GTD+ +I
Sbjct: 211 KYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIR 270
Query: 60 VLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103
V+ RS +I F+ F K L ++ + G++ A++ L
Sbjct: 271 VMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLL 314
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 312 bits (800), Expect = e-105
Identities = 102/335 (30%), Positives = 173/335 (51%), Gaps = 34/335 (10%)
Query: 34 FDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELG 93
FD DA + A+K G DE I+++L RSN QRQ+IA A++ K+L LKS L
Sbjct: 2 FDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALS 61
Query: 94 GNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYE 153
G+ E I+ L+ + A EL +M G+GTDE++L+EI+ + +N ++ I VY++MY+
Sbjct: 62 GHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYK 121
Query: 154 SSLEDDLKSEASGGFKRLLVSLVQGNRDED-DEVDADAARADAQKLLDAGVESFGTDEST 212
+ LE D+ S+ SG F++L+V+L +G R ED +D + DA+ L DAGV+ GTD
Sbjct: 122 TDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPK 181
Query: 213 FNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEKLKTPF 272
+ +I+ +RS L++VF Y+ + +D+ E+I+ E G LE+ +L++ +
Sbjct: 182 WISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQ-------- 233
Query: 273 CNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVERSYQQ 332
+ A +L D+ GT + I+V RS
Sbjct: 234 ------------------------NKPLYFADRLYDSMKGK-GTRDKVLIRIMVSRSEVD 268
Query: 333 LRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
+ ++ +++ G + I+ +T G + L +
Sbjct: 269 MLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYL 303
Score = 122 bits (308), Expect = 2e-32
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDL 88
D + DA L A GTD I ++ +RS Q++ D +K+ D+++ +
Sbjct: 154 VIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESI 213
Query: 89 KSELGGNFED---AIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
+ E+ G+ E+ +V + P +A L+D+M G GT ++ L+ I+ + S + I
Sbjct: 214 RKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIR 273
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGN 179
+++ Y SL ++ + G +++ L+ L G+
Sbjct: 274 SEFKRKYGKSLYYYIQQDTKGDYQKALLYLCGGD 307
Score = 66.5 bits (162), Expect = 2e-12
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 299 ARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSG 358
A DA + A +++ G DE T IL RS Q + + AY++ ++ A+KS SG
Sbjct: 4 AERDALNIETA-IKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSG 62
Query: 359 SLEDGYLSIDWN 370
LE L +
Sbjct: 63 HLETVILGLLKT 74
Score = 65.7 bits (160), Expect = 4e-12
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 3 EQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVL 61
+ S+ + + +V P A+ L +MKG GT ++ +I ++
Sbjct: 202 KSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIM 261
Query: 62 AKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVAL 103
RS +I FK +GK L ++ + G+++ A++ L
Sbjct: 262 VSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYL 303
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 322 bits (826), Expect = e-104
Identities = 126/342 (36%), Positives = 181/342 (52%), Gaps = 33/342 (9%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLI 85
++ FDPN DAE L AMKGFG+D++ I+D++ RSN+QRQE+ ++K+L+GKDLI
Sbjct: 11 GSIHDFPGFDPNQDAEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSYKSLYGKDLI 70
Query: 86 DDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
DLK EL G FE IV LM P AKE+ DA+SG+GTDE+ L+EIL++ +N + +
Sbjct: 71 ADLKYELTGKFERLIVGLMRPPAYCDAKEIKDAISGIGTDEKCLIEILASRTNEQMHQLV 130
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVES 205
Y+ YE LE D+ + SG F+++LV L+QG R+EDD V D + D Q L +AG
Sbjct: 131 AAYKDAYERDLEADIIGDTSGHFQKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELK 190
Query: 206 FGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMP 265
+GTDE+ F IL RS Q LR VF Y K G IE +I+ E SG E L++ K
Sbjct: 191 WGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLMLAVVKCIR- 249
Query: 266 EKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAIL 325
A + L ++ GT ++T I+
Sbjct: 250 -------------------------------STPEYFA-ERLFKAMKGLGTRDNTLIRIM 277
Query: 326 VERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
V RS + + + + + IK++TSG + L +
Sbjct: 278 VSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKKTLLKL 319
Score = 315 bits (809), Expect = e-102
Identities = 123/351 (35%), Positives = 182/351 (51%), Gaps = 38/351 (10%)
Query: 22 QQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFG 81
+ V PA+ F+P+ DA+ LR AMKG GTDE IID++ RSN QRQ+I FK+ FG
Sbjct: 350 VELKGDVRPANDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFG 409
Query: 82 KDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGI 141
+DL+ DLKSE+ G+ I+ LM P AK+L AM G GTDE+AL+EIL+T +N I
Sbjct: 410 RDLMTDLKSEISGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEI 469
Query: 142 RTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDE-----VDADAARADAQ 196
R I E Y++ Y SLED L S+ SG F+R+L+SL G+R+E E + A+
Sbjct: 470 RAINEAYKEDYHKSLEDALSSDTSGHFRRILISLATGHREEGGENLDQAREDAQVAAEIL 529
Query: 197 KLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGY 256
++ D + E+ F IL RSY LR+VF+ + K+ +D+E IK E SG + D +
Sbjct: 530 EIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGDVRDAF 589
Query: 257 LSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGT 316
++I + + A KL + + T
Sbjct: 590 VAIVQSVK--------------------------------NKPLFFADKLYKSMKGAG-T 616
Query: 317 DESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
D+ T I+V RS L + + + + + +AI+ +TSG L++
Sbjct: 617 DDKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGDFLKALLAL 667
Score = 223 bits (569), Expect = 7e-67
Identities = 95/369 (25%), Positives = 159/369 (43%), Gaps = 71/369 (19%)
Query: 39 DAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFED 98
AE L AMKG GT + +I ++ RS +I + F+T + K L +K++ G ++
Sbjct: 255 FAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKK 314
Query: 99 AIVALMT----------------------------------------PLPELYAKELHDA 118
++ L P+ AK L A
Sbjct: 315 TLLKLSGGDDDAAGQFFPEAAQVAYQMWELSAVARVELKGDVRPANDFNPDADAKALRKA 374
Query: 119 MSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQG 178
M G+GTDE+ +++I++ SN + I + ++ + L DLKSE SG RL++ L+
Sbjct: 375 MKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGLMM- 433
Query: 179 NRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGH 238
A DA++L A +E GTDE IL R+ ++R + +AY++
Sbjct: 434 ----------PPAHYDAKQLKKA-MEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHK 482
Query: 239 DIEEAIKSETSGSLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADA 298
+E+A+ S+TSG +S+ E G + D +
Sbjct: 483 SLEDALSSDTSGHFRRILISLATGHREE-------------------GGENLDQAREDAQ 523
Query: 299 ARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSG 358
A+ ++ D + E+ F IL RSY LR+VF+ + K+ +D+E IK E SG
Sbjct: 524 VAAEILEIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSG 583
Query: 359 SLEDGYLSI 367
+ D +++I
Sbjct: 584 DVRDAFVAI 592
Score = 199 bits (508), Expect = 4e-58
Identities = 96/371 (25%), Positives = 158/371 (42%), Gaps = 70/371 (18%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDL 88
D + L A + +GTDE I +L RS Q + + D + GK + +
Sbjct: 170 VVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASI 229
Query: 89 KSELGGNFEDAIVAL---MTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
+ EL G+FE ++A+ + PE +A+ L AM G+GT + L+ I+ + S + I
Sbjct: 230 RGELSGDFEKLMLAVVKCIRSTPEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIR 289
Query: 146 EVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAA-------------- 191
E++ YE SL +K++ SG +K+ L+ L G+ D + +AA
Sbjct: 290 EIFRTKYEKSLYSMIKNDTSGEYKKTLLKLSGGDDDAAGQFFPEAAQVAYQMWELSAVAR 349
Query: 192 ---------------RADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLA 236
ADA+ L A ++ GTDE T I+ RS Q +Q+ + ++
Sbjct: 350 VELKGDVRPANDFNPDADAKALRKA-MKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHF 408
Query: 237 GHDIEEAIKSETSGSLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDA 296
G D+ +KSE SG L L +
Sbjct: 409 GRDLMTDLKSEISGDLARLILGLMM----------------------------------- 433
Query: 297 DAARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSET 356
A DA++L A +E GTDE IL R+ ++R + +AY++ +E+A+ S+T
Sbjct: 434 PPAHYDAKQLKKA-MEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDALSSDT 492
Query: 357 SGSLEDGYLSI 367
SG +S+
Sbjct: 493 SGHFRRILISL 503
Score = 193 bits (491), Expect = 1e-55
Identities = 89/277 (32%), Positives = 132/277 (47%), Gaps = 36/277 (12%)
Query: 89 KSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVY 148
K G + +I P A+ L+ AM G G+D+EA+++I+++ SN + + + Y
Sbjct: 2 KPAQGAKYRGSIHDFPGFDPNQDAEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSY 61
Query: 149 EKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFGT 208
+ +Y L DLK E +G F+RL+V L++ A DA+++ DA + GT
Sbjct: 62 KSLYGKDLIADLKYELTGKFERLIVGLMR-----------PPAYCDAKEIKDA-ISGIGT 109
Query: 209 DESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEKL 268
DE IL R+ +Q+ Q+ AY+ D+E I +TSG + + +
Sbjct: 110 DEKCLIEILASRTNEQMHQLVAAYKDAYERDLEADIIGDTSGHFQKMLVVL--------- 160
Query: 269 KTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVER 328
L G R+EDD V D + D Q L +AG +GTDE+ F IL R
Sbjct: 161 ---------------LQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNR 205
Query: 329 SYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYL 365
S Q LR VF Y K G IE +I+ E SG E L
Sbjct: 206 SKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLML 242
Score = 120 bits (302), Expect = 8e-30
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 39 DAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSELGGNFE 97
+ + G + E + +L RS + + F + D+ +K E+ G+
Sbjct: 527 EILEIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGDVR 586
Query: 98 DAIVALMTPL---PELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYES 154
DA VA++ + P +A +L+ +M G GTD++ L I+ + S + I + + Y+
Sbjct: 587 DAFVAIVQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEIDLLNIRREFIEKYDK 646
Query: 155 SLEDDLKSEASGGFKRLLVSLVQG 178
SL ++ + SG F + L++L G
Sbjct: 647 SLHQAIEGDTSGDFLKALLALCGG 670
Score = 67.7 bits (165), Expect = 2e-12
Identities = 21/96 (21%), Positives = 41/96 (42%)
Query: 9 FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQ 68
+ ++ + +V + P A+ L +MKG GTD++ + ++ RS
Sbjct: 573 VEHTIKKEMSGDVRDAFVAIVQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEID 632
Query: 69 RQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVALM 104
I F + K L ++ + G+F A++AL
Sbjct: 633 LLNIRREFIEKYDKSLHQAIEGDTSGDFLKALLALC 668
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 309 bits (794), Expect = e-104
Identities = 80/340 (23%), Positives = 137/340 (40%), Gaps = 34/340 (10%)
Query: 28 VVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDD 87
VP + D E LR A G+GT+E IID+L R+ +QR I + +G+DL+
Sbjct: 10 TVPTTVPSVSEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKA 69
Query: 88 LKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEV 147
L EL +FE ++ E A ++A + + L+EI T S + +
Sbjct: 70 LDKELSNDFERLVLLWALDPAERDALLANEATKRWTSSNQVLMEIACTRSANQLLHARQA 129
Query: 148 YEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFG 207
Y Y+ SLE+D+ +G F +LL+ LV R E +EV+ A+ +A+ L +
Sbjct: 130 YHARYKKSLEEDVAHHTTGDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAY 189
Query: 208 TDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEK 267
+D+ +L RS Q+ Y+ G+DI + +K++ S K +
Sbjct: 190 SDDDVIR-VLATRSKAQINATLNHYKNEYGNDINKDLKADPKDEFLALLRSTVKCLV--- 245
Query: 268 LKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVE 327
+ + +L + GTDE ++
Sbjct: 246 -----------------------------YPEKYFEK-VLRLAINRRGTDEGALTRVVCT 275
Query: 328 RSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
R+ L+ + Y++ + AI +T G E L +
Sbjct: 276 RAEVDLKVIADEYQRRNSVPLTRAIVKDTHGDYEKLLLVL 315
Score = 198 bits (505), Expect = 6e-61
Identities = 56/274 (20%), Positives = 95/274 (34%), Gaps = 37/274 (13%)
Query: 94 GNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYE 153
+ V P ++L A SG GT+E +++IL + I + Y + Y
Sbjct: 4 HHHATLTVPTTVPSVSEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYG 63
Query: 154 SSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTF 213
L L E S F+RL++ D A DA +A + + +
Sbjct: 64 EDLLKALDKELSNDFERLVLLWAL-----------DPAERDALLANEA-TKRWTSSNQVL 111
Query: 214 NAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEKLKTPFC 273
I RS QL +AY +EE + T+G L
Sbjct: 112 MEIACTRSANQLLHARQAYHARYKKSLEEDVAHHTTGDFHKLLLP--------------- 156
Query: 274 NRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVERSYQQL 333
++ R E +EV+ A+ +A+ L + +D+ +L RS Q+
Sbjct: 157 ---------LVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAYSDDDVIR-VLATRSKAQI 206
Query: 334 RQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
Y+ G+DI + +K++ S
Sbjct: 207 NATLNHYKNEYGNDINKDLKADPKDEFLALLRST 240
Score = 126 bits (318), Expect = 1e-33
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 3/155 (1%)
Query: 30 PADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLK 89
+ +A++L + + +I VLA RS Q + +K +G D+ DLK
Sbjct: 167 EVNMTLAKTEAKLLHEKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEYGNDINKDLK 226
Query: 90 SELGGNFEDAIVALMTPL---PELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAE 146
++ F + + + L + + K L A++ GTDE AL ++ T + ++ IA+
Sbjct: 227 ADPKDEFLALLRSTVKCLVYPEKYFEKVLRLAINRRGTDEGALTRVVCTRAEVDLKVIAD 286
Query: 147 VYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRD 181
Y++ L + + G +++LL+ L +
Sbjct: 287 EYQRRNSVPLTRAIVKDTHGDYEKLLLVLAGHVEN 321
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 267 bits (683), Expect = 1e-87
Identities = 52/337 (15%), Positives = 115/337 (34%), Gaps = 44/337 (13%)
Query: 33 PFDPNGD-AEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSE 91
P GD ++A ++ +E+ ++ ++ S ++R+E+ F+ G + I LK
Sbjct: 2 PLGSYGDAIPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKC 59
Query: 92 L-GGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEK 150
+ G +ED + + AM D A+ +++ + +A+ Y++
Sbjct: 60 IKNGPYEDVMALGWDCNISARVNVIKKAMKN-VNDFRAIHDVVLIATPDERLKLAQAYKE 118
Query: 151 MYESSLEDDLKSE--ASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFGT 208
+ L D + + L ++ NR V +DA+ L +++
Sbjct: 119 KTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVA-----SDAEVLKHNLIDADEP 173
Query: 209 DESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEKL 268
D +++ + + +++ +E L G ++EAI++ + L I
Sbjct: 174 DHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAHY------ 227
Query: 269 KTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVER 328
N ARA A + VE+ D + A +
Sbjct: 228 ----YNL---------------------APARAVA-YAFHSAVETQNDDMAYEQAARITG 261
Query: 329 SYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYL 365
+ L + + G ++ + S
Sbjct: 262 LFHDLHKFAWVHYACWGVMRDDILSRFQSKEANKVNF 298
Score = 169 bits (429), Expect = 9e-50
Identities = 31/257 (12%), Positives = 83/257 (32%), Gaps = 43/257 (16%)
Query: 112 AKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSE-ASGGFKR 170
E+ + +EE LV S S + + ++ LK +G ++
Sbjct: 10 IPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYED 67
Query: 171 LLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFK 230
++ N V A + D + +++ + + ++ +
Sbjct: 68 VMALGWDCNISARVNVIKKAMKN-------------VNDFRAIHDVVLIATPDERLKLAQ 114
Query: 231 AYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDE 290
AY++ G+D+ + + + + L
Sbjct: 115 AYKEKTGNDLLQDFVDQIPLTS---------------------------AASYLCHLAIR 147
Query: 291 DDEVDADAARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEE 350
++ + +DA+ L +++ D +++ + + +++ +E L G ++E
Sbjct: 148 ENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQE 207
Query: 351 AIKSETSGSLEDGYLSI 367
AI++ + L I
Sbjct: 208 AIETRYADKENARGLCI 224
Score = 107 bits (268), Expect = 1e-26
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 5/164 (3%)
Query: 14 GSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQPIIDVLAKRSNQQRQEI 72
++ DAEVL+ + D + ++ ++ + + +EI
Sbjct: 134 LTSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEI 193
Query: 73 ADAFKTLFGKDLIDDLKSELGGNFED----AIVALMTPLPELYAKELHDAMSGVGTDEEA 128
F+ L GK + + +++ A H A+ D
Sbjct: 194 NHRFEVLTGKSVQEAIETRYADKENARGLCIAHYYNLAPARAVAYAFHSAVETQNDDMAY 253
Query: 129 LVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLL 172
T + + A V+ + +D L S ++
Sbjct: 254 EQAARITGLFHDLHKFAWVHYACWGVMRDDILSRFQSKEANKVN 297
Score = 71.0 bits (174), Expect = 5e-14
Identities = 21/190 (11%), Positives = 55/190 (28%), Gaps = 40/190 (21%)
Query: 191 ARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSE-TS 249
+ DA + A +E +E + S ++ +++ ++ G + +K +
Sbjct: 5 SYGDAIPEVKAILE--AKNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKN 62
Query: 250 GSLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDA 309
G ED + V A +
Sbjct: 63 GPYED--VMALGWDCNI----------------------SARVNVIKKAMKN-------- 90
Query: 310 GVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIDW 369
D + +++ + + ++ +AY++ G+D+ + + + YL
Sbjct: 91 -----VNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLA 145
Query: 370 NNGGDATEGT 379
G+
Sbjct: 146 IRENRTPRGS 155
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 266 bits (682), Expect = 3e-87
Identities = 64/347 (18%), Positives = 125/347 (36%), Gaps = 45/347 (12%)
Query: 29 VPADPFDPNGDAE-VLRAAMKGFGTDEQ--PIIDVLAKRSNQQRQEIADAFKTLFGKDLI 85
+ + + V++ ++ + + +I++ Q + + F+ + G L
Sbjct: 1 MANKNYQMSTGVTAVVQKVVEACQDESKRLDLIEIARSYPPNQLRNMQRTFQAITGTFLD 60
Query: 86 DDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIA 145
LK L +FE ++ L P +L + + A G GTDE+ LV++L T+ + +R I
Sbjct: 61 AFLKKHLSKDFESLVLMLYKPRAQLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIR 120
Query: 146 EVYEKMYESSLEDDLKSEASGGF--KRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGV 203
++Y ++Y SL D ++ + + +L+ ++ G+R D D + A
Sbjct: 121 QLYYQLYNDSLGDVVRKDCGDKYMWAKLINAVATGDR---IPRDTHELEEDLVLVRKAIE 177
Query: 204 ESF--GTDESTFNAILVQRSYQQLRQVFKAYE-KLAGHDIEEAIKSETSGSLEDGYLSIG 260
+ ST+ I + RQ+ K Y K G + ++ E G E +
Sbjct: 178 TKGVKKDEVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGVEDEFQGLDEYAFKLAH 237
Query: 261 KMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDEST 320
D A A + A G+D +
Sbjct: 238 DFLY--------------------------------DPCCAAAFSMNVA-FAGSGSDSNR 264
Query: 321 FNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSI 367
N I ++ + Y+K+ G +E +E G D +
Sbjct: 265 LNRITAMHF-RECKGCKYYYKKVYGQAFDERCATELKGVYGDAIKLL 310
Score = 116 bits (291), Expect = 1e-29
Identities = 27/189 (14%), Positives = 64/189 (33%), Gaps = 8/189 (4%)
Query: 18 RCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGF---GTDEQPIIDVLAKRSNQQRQEIAD 74
+ + +P D + D ++R A++ + I + A + +++
Sbjct: 147 KLINAVATGDRIPRDTHELEEDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHK 206
Query: 75 AFKTLF-GKDLIDDLKSELGGNFEDA---IVALMTPLPELYAKELHDAMSGVGTDEEALV 130
+ + G L ++ E G E A + A ++ A +G G+D L
Sbjct: 207 MYSAKYNGDSLRAGVEDEFQGLDEYAFKLAHDFLYDPCCAAAFSMNVAFAGSGSDSNRLN 266
Query: 131 EILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADA 190
I + + Y+K+Y + ++ +E G + + L + +D
Sbjct: 267 RITAMHFRE-CKGCKYYYKKVYGQAFDERCATELKGVYGDAIKLLWEPVTVPLLSMDDYQ 325
Query: 191 ARADAQKLL 199
+ +
Sbjct: 326 GSEQHRPMT 334
Score = 81.6 bits (201), Expect = 2e-17
Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 38/184 (20%)
Query: 191 ARADAQKLLDAGVESFGTDESTFN--AILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSET 248
++ VE+ + + I QLR + + ++ + G ++ +K
Sbjct: 8 MSTGVTAVVQKVVEACQDESKRLDLIEIARSYPPNQLRNMQRTFQAITGTFLDAFLKKHL 67
Query: 249 SGSLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLD 308
S E L + K + + +
Sbjct: 68 SKDFES--LVLMLYKPRAQ---------------------------------LLCELIRG 92
Query: 309 AGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSID 368
A + GTDE +L+ ++R++ + Y +L + + ++ + L
Sbjct: 93 A-TKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVVRKDCGDKYMWAKLINA 151
Query: 369 WNNG 372
G
Sbjct: 152 VATG 155
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 256 bits (655), Expect = 1e-83
Identities = 57/337 (16%), Positives = 114/337 (33%), Gaps = 47/337 (13%)
Query: 35 DPNGDAEVLRAAMKGFGTDEQPIIDVLAKRSNQQRQEIADAFKTLFGKDLIDDLKSEL-G 93
A L+ A+ DE I + ++ S + R++IA A+ +GK+L DD+K L G
Sbjct: 3 KVTDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKG 60
Query: 94 GNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYE 153
G+ E ++ L + E+ A+ + DA+SG D A + + + Y +M++
Sbjct: 61 GSEESLLMDLFSDRHEVRAQHIRDALSG-RNDHMAFFDTVILCTPEDWHETVAAYTRMFK 119
Query: 154 SSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTF 213
L +D + L L++ + + +AQ+L A + +
Sbjct: 120 KPLVEDFMKDVGRKEDWCL--LMEKWMAHERVSRPGSPEDEAQRLDQAFD---QKNTAYL 174
Query: 214 NAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEKLKTPFC 273
+ R + +A++ G IE+AI + + + + +
Sbjct: 175 IDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIATIYTKTDYYTFYCAHFALL--------- 225
Query: 274 NRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVERSYQQL 333
R A + A G ++ +
Sbjct: 226 -----------------------GMHRLAAYLINCA-CNDKGDEKRM---RRITGMMVDK 258
Query: 334 RQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIDWN 370
K K+ G D+ I+ + ++ W
Sbjct: 259 CLGAKHAYKIYG-DMGTDIERCFDKRMAPILRTL-WR 293
Score = 177 bits (450), Expect = 5e-53
Identities = 41/262 (15%), Positives = 78/262 (29%), Gaps = 43/262 (16%)
Query: 106 PLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSLEDDLKSEAS 165
P A EL A+ DE + I S S IA+ Y Y L DD+K
Sbjct: 2 PKVTDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALK 59
Query: 166 GGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVQRSYQQL 225
GG + L+ + +R E A + D F ++ + +
Sbjct: 60 GGSEESLLMDLFSDRHEVRAQHIRDALSG------------RNDHMAFFDTVILCTPEDW 107
Query: 226 RQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILD 285
+ AY ++ + E + + L ++
Sbjct: 108 HETVAAYTRMFKKPLVEDFMKDVGRKEDWCLL--------------------------ME 141
Query: 286 GNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVERSYQQLRQVFKAYEKLAG 345
+ + +AQ+L A + + + R + +A++ G
Sbjct: 142 KWMAHERVSRPGSPEDEAQRLDQAFD---QKNTAYLIDFFGTVPSAEYRPIAEAFKAQNG 198
Query: 346 HDIEEAIKSETSGSLEDGYLSI 367
IE+AI + + + +
Sbjct: 199 KSIEQAIATIYTKTDYYTFYCA 220
Score = 82.2 bits (203), Expect = 7e-18
Identities = 29/184 (15%), Positives = 50/184 (27%), Gaps = 39/184 (21%)
Query: 191 ARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAYEKLAGHDIEEAIKSETSG 250
A +L A DE I + S + ++ KAY G ++ + IK G
Sbjct: 4 VTDIANELKQAI---DAKDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKG 60
Query: 251 SLEDGYLSIGKMKMPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAG 310
E+ +L + EV A R DA
Sbjct: 61 GSEE---------------------------SLLMDLFSDRHEVRAQHIR-DALSG---- 88
Query: 311 VESFGTDESTFNAILVERSYQQLRQVFKAYEKLAGHDIEEAIKSETSGSLEDGYLSIDWN 370
D F ++ + + + AY ++ + E + + L W
Sbjct: 89 ----RNDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVEDFMKDVGRKEDWCLLMEKWM 144
Query: 371 NGGD 374
Sbjct: 145 AHER 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 2e-11
Identities = 63/488 (12%), Positives = 129/488 (26%), Gaps = 147/488 (30%)
Query: 2 GEQQYCRF-DSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDV 60
E+ +F + L Y+ L + + P+ + D Q
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSP-----IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 61 LAKRSNQQRQEIADAFKTL-------------FGK-----DLIDDLKSELGGNFE----- 97
R Q ++ A L GK D+ K + +F+
Sbjct: 130 NVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 98 ----DAIVALMTPLPELYAK------ELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEV 147
++ ++ L +L + D S + ++ L L +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----------L 238
Query: 148 YEKMYESSLE--DDLKS----EASGGFK---RLLVSLVQGNRDEDDEVDADAARADAQKL 198
K YE+ L ++++ A F ++L++ R + D +A
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLT----TRFKQV-TDFLSAATTTHIS 290
Query: 199 LDAGVESFGTDEST--FNAILVQRS----------------------------YQQLRQV 228
LD + DE L R + + V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 229 FKAYEKLAGHDIEEAIKSETSGSLEDGY--LSIGKMKMPEKLKTPFCNRLGVASFRILDG 286
+KL IE ++ + LS+ P P ++
Sbjct: 351 N--CDKLT-TIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIP------TILLSLIWF 397
Query: 287 NRDEDDE---VDADAARADAQK------------LLDAGVESFGTDESTFNAILVERSYQ 331
+ + D V+ + +K L+ V+ +E + +V+ Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL--ENEYALHRSIVDH-YN 454
Query: 332 QLRQVFKA-----------YEKLAGHDIEEAIKSETSGSLEDGYLSIDW-----NNGGDA 375
+ Y + H ++ E +L + + A
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 376 TEGTGAVL 383
+G++L
Sbjct: 514 WNASGSIL 521
Score = 47.9 bits (113), Expect = 4e-06
Identities = 58/338 (17%), Positives = 107/338 (31%), Gaps = 98/338 (28%)
Query: 82 KDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEE------------AL 129
KD++ FEDA V K++ D + + EE
Sbjct: 19 KDILSV--------FEDAFVD------NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 130 VEILSTLSNYGIRTIAEVYEKMYESSLEDD-------LKSEASGGFKRLLVSLVQGNRDE 182
+ + TL + E+ +K E L + +K+E + + Q +R
Sbjct: 65 LRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 183 DD-----------EVDADAARADAQKLLDA------GVESFGTDESTFNAILVQRSYQ-Q 224
+D R +L A GV G ++ A+ V SY+ Q
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWV-ALDVCLSYKVQ 177
Query: 225 LRQVFKAY-----------------EKLAGHDIEEAIKSETSGSLEDGYLSIGKMKMPEK 267
+ FK + +KL + I+ S + S + L I ++ +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHS-SNIKLRIHSIQ--AE 233
Query: 268 LKTPFCNRLGVASFRILDGNRDEDDEV-DADAARA-DAQ-KLL----DAGVESFGTDEST 320
L+ ++ +L V +A A A + K+L V F + +T
Sbjct: 234 LRRLLKSKPYENCLLVL-------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 321 FNAILVERSY----QQLRQVFKAYEKLAGHDI-EEAIK 353
+ L S +++ + Y D+ E +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 4e-09
Identities = 75/452 (16%), Positives = 134/452 (29%), Gaps = 151/452 (33%)
Query: 12 SLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLR--------AAMKGFGTDEQPIIDV-LA 62
S GS + L VP F A L+ +GF D++P L
Sbjct: 12 SHGS-----LEHVLL--VPTASF---FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 63 KR-----SNQQRQEIADAFKTLFGKDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHD 117
+ S+ F + L L FE+ L ++H
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQV--------LNLCLT-EFENCY---------LEGNDIHA 103
Query: 118 -AMSGVGTDEEALVEILSTLSNY--GIRTIAEVYEKMYESSLEDDLKSEASGGFKRLLVS 174
A + ++ LV+ + NY ++K S+L ++ G + LV+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL---FRAVGEGNAQ--LVA 158
Query: 175 LV--QGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVQRSYQQLRQVFKAY 232
+ QGN D+ F +E LR +++ Y
Sbjct: 159 IFGGQGNTDD----------------------YF--EE--------------LRDLYQTY 180
Query: 233 EKLAGHDIEEAIK-----SETSGSLEDGY---LSIGK-MKMPEK------LKT-PF-CNR 275
L G I+ + + T+ E + L+I + ++ P L + P C
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 276 LGVASF-------RILDGNRDEDDEVDADAARADAQKLLDAGVESFGTDESTFNAILVE- 327
+GV ++L E A +Q L+ A + +F + +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 328 ---------RSYQQ----------LRQVFKAYEKLAGH----------DIEEAIKSETSG 358
R Y+ L + E + +++ + +T+
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNS 358
Query: 359 SL-EDGYLSIDWNNGGDA---TEGTGAVLLGL 386
L + I NG + G L GL
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVS-GPPQSLYGL 389
Score = 47.7 bits (113), Expect = 5e-06
Identities = 42/255 (16%), Positives = 71/255 (27%), Gaps = 94/255 (36%)
Query: 205 SFGTDESTFNAILVQRS----YQQLRQVFKA-----YEKLAGHDIEEAIKSETSGSLE-- 253
S G+ E LV + QL++ F E A D E + E
Sbjct: 12 SHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADD-------EPTTPAELV 61
Query: 254 ---DGYLSIGKMKMPEKLKTPFCN--RLGVASF--RILDGN----------RDEDDEVDA 296
GY+S + F L + F L+GN ++ D +
Sbjct: 62 GKFLGYVS---SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 297 D--------AARADAQKLLDAGVES----------------F---GTDESTFNAILVERS 329
AR A++ D S F G + F
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-------- 170
Query: 330 YQQLRQVFKAYEKLAGHDIEEAIK---------SETSGSLEDGYLSIDWNNGGDATEGTG 380
++LR +++ Y L G I+ + + + G ++W T
Sbjct: 171 -EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 381 -----AV---LLGLT 387
+ L+G+
Sbjct: 230 YLLSIPISCPLIGVI 244
Score = 46.2 bits (109), Expect = 1e-05
Identities = 54/310 (17%), Positives = 104/310 (33%), Gaps = 109/310 (35%)
Query: 109 ELY-----AKELHDAMSGVGTDEE--ALVEILS------TLSNYGI--RTIAEVYEKM-Y 152
+LY A+++ + D ++++I+ T+ G + I E Y M +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 153 ESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVESFGTDEST 212
E+ ++ LK+E FK + + LL A T
Sbjct: 1694 ETIVDGKLKTEKI--FKEINEHSTSYTFRSEKG------------LLSA----------T 1729
Query: 213 FN---AIL-VQRS-YQQLRQ--VFKAYEKLAGHDIEE--AIKSETSG--SLEDGYLSI-- 259
A+ ++++ ++ L+ + A AGH + E A+ S + S+E + +
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS-LADVMSIESL-VEVVF 1787
Query: 260 --GKMK---MPEKLKTPFCNRLGVASFRILDGNRDEDDEVDADAARADAQKLLDAGVESF 314
G +P + LG +++ ++ N V A ++ Q + VE
Sbjct: 1788 YRGMTMQVAVPR-------DELGRSNYGMIAIN---PGRVAASFSQEALQYV----VERV 1833
Query: 315 GTDEST------FNAILVERSYQQLRQVFKAYEKLAGH--DIEEA--------------I 352
G +N QQ V AG ++ I
Sbjct: 1834 GKRTGWLVEIVNYNV-----ENQQY--V------AAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 353 KSETSGSLED 362
+ + S SLE+
Sbjct: 1881 ELQKSLSLEE 1890
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Length = 437
Score = 39.9 bits (92), Expect = 0.001
Identities = 19/80 (23%), Positives = 30/80 (37%)
Query: 6 YCRFDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQPIIDVLAKRS 65
+ LG T L ++ + PF G L+A +G + V A
Sbjct: 232 FILAQPFLGETTGALERRGAKRIAAPFPFGEEGTTLWLKAVADAYGVSAEKFEAVTAAPR 291
Query: 66 NQQRQEIADAFKTLFGKDLI 85
+ ++ IA +TL GK L
Sbjct: 292 ARAKKAIAAHLETLTGKSLF 311
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop,
transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces
cerevisiae} PDB: 3bjy_A* 3osp_A*
Length = 434
Score = 28.1 bits (63), Expect = 6.0
Identities = 6/64 (9%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 97 EDAIVALMTPLPELYAKELHDAMSGVGTDEEALVEILSTLSNYGIRTIAEVYEKMYESSL 156
+ + +L GVG + + L + + ++ ++ ++ +L
Sbjct: 231 SNLSEEFWSSFK---LDDLP----GVG---HSTLSRLESTFD-SPHSLNDLRKRYTLDAL 279
Query: 157 EDDL 160
+ +
Sbjct: 280 KASV 283
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 27.6 bits (62), Expect = 7.3
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 17/83 (20%)
Query: 193 ADAQKLLDAGVE-SFGTDESTFN--------AILVQRSYQQLRQVFKAYEKLAGHDIEEA 243
+A + AG + G+D + QR Y + R V A E G
Sbjct: 312 FNATEFAAAGGKFGIGSDSNVLIGIGDELRQLEYSQRLYHRARNVLAANEGSTG---RAL 368
Query: 244 IKSETSGS-----LEDGYLSIGK 261
G + L G
Sbjct: 369 FDGAVLGGNIAMGRPEDGLKKGA 391
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics; HET: MSE; 1.75A {Neisseria meningitidis
serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Length = 275
Score = 27.5 bits (62), Expect = 7.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 11/38 (28%)
Query: 166 GGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGV 203
GG+K VQG R A A DA+ DAG
Sbjct: 149 GGYK------VQG-RGGK----AQALLNDAKAHDDAGA 175
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente
eukaryotic structural genomics, CESG, structural
genomics, function; HET: MSE; 1.92A {Danio rerio}
Length = 224
Score = 27.3 bits (60), Expect = 7.7
Identities = 11/99 (11%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 145 AEVYEKMYESSLEDDLKSEASGGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGVE 204
+ ++ + ++ + K F+R L++ +Q +E + + +
Sbjct: 54 SREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRSTQEWVCLVSFIC-N 112
Query: 205 SFGTDEST--FNAILVQRSYQQLRQVFKAYEKLAGHDIE 241
F + LV Y L ++ ++ +++
Sbjct: 113 IFDYLKVNNMPMVALVHPVYDCLFRLAQSDALKNEEEVD 151
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 27.2 bits (61), Expect = 8.8
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 36/107 (33%)
Query: 117 DAMSGVGTDEEA------LVEILSTLSNYGIRTIAEVYE-KMYESSLEDDLKSEASGGFK 169
D+ V D+E L+ I S L N I + YE K Y G FK
Sbjct: 257 DSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGY-------------GEFK 303
Query: 170 RLLVSLV-------QGNRDE---DDEVD------ADAARADAQKLLD 200
L +V Q E +E+D A+ A A K+L
Sbjct: 304 GDLAEVVVNALKPIQDRYYELIESEELDRILDEGAERANRTANKMLK 350
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics, seattle structural genomics center for
infectious disease; 1.80A {Burkholderia thailandensis}
PDB: 3ez4_A
Length = 275
Score = 27.1 bits (61), Expect = 9.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 166 GGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGV 203
GGFK VQG + E A DA+ + +AG
Sbjct: 160 GGFK------VQG-KTEAG---AAQLLRDARAVEEAGA 187
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase;
beta-alpha-barrel, TIM-barrel, ketopantoate,
selenomethionin decamer; HET: KPL; 1.80A {Escherichia
coli} SCOP: c.1.12.8
Length = 264
Score = 27.1 bits (61), Expect = 9.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 166 GGFKRLLVSLVQGNRDEDDEVDADAARADAQKLLDAGV 203
GG+K VQG R ++ D +DA L AG
Sbjct: 148 GGYK------VQG-RGDEA---GDQLLSDALALEAAGA 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.368
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,166,178
Number of extensions: 399293
Number of successful extensions: 1386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1238
Number of HSP's successfully gapped: 113
Length of query: 391
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 296
Effective length of database: 4,049,298
Effective search space: 1198592208
Effective search space used: 1198592208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)