BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2496
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YCD|A Chain A, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
           Serine Hydrolase Family
 pdb|1YCD|B Chain B, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
           Serine Hydrolase Family
          Length = 243

 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 1   MRKRLKSL-AELTYIDAPYVIENPNI------SSLEDLAPTGEQRSWFHPLDDRYSENIV 53
           +RK LK    +  YIDAP ++E  ++         +        R+WF+  +  +  +I 
Sbjct: 28  IRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHSEISHELDIS 87

Query: 54  TGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLIC 90
            G       + + I++ GP+DGI+G SQGA L  +I 
Sbjct: 88  EGLKS----VVDHIKANGPYDGIVGLSQGAALSSIIT 120


>pdb|3AES|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AES|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 39  SWFHPLDDRYSENIVTGFNESFPF 62
           +W HPL     E+++T F E F F
Sbjct: 401 TWVHPLVXGLEEHLLTXFREDFEF 424


>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 39  SWFHPLDDRYSENIVTGFNESFPF 62
           +W HPL     E+++T F E F F
Sbjct: 401 TWVHPLVMGLEEHLLTMFREDFEF 424


>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 39  SWFHPLDDRYSENIVTGFNESFPF 62
           +W HPL     E+++T F E F F
Sbjct: 401 TWVHPLVMGLEEHLLTMFREDFEF 424


>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 39  SWFHPLDDRYSENIVTGFNESFPF 62
           +W HPL     E+++T F E F F
Sbjct: 401 TWVHPLVMGLEEHLLTMFREDFEF 424


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.140    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,168,672
Number of Sequences: 62578
Number of extensions: 126245
Number of successful extensions: 333
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)