Query psy2496
Match_columns 102
No_of_seqs 141 out of 1094
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:41:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2551|consensus 99.9 4.2E-24 9.1E-29 149.7 6.7 97 1-99 28-131 (230)
2 PF03959 FSH1: Serine hydrolas 99.9 1.3E-24 2.8E-29 151.8 3.9 94 1-97 27-127 (212)
3 PF02230 Abhydrolase_2: Phosph 99.2 3.3E-11 7.2E-16 83.8 6.7 81 7-95 41-128 (216)
4 COG0400 Predicted esterase [Ge 98.7 1.7E-07 3.7E-12 65.8 8.2 73 6-94 42-121 (207)
5 PRK11460 putative hydrolase; P 98.6 2.1E-07 4.6E-12 65.6 8.3 74 8-94 45-125 (232)
6 KOG2112|consensus 98.4 1.1E-06 2.4E-11 61.5 6.8 78 8-93 30-114 (206)
7 TIGR01840 esterase_phb esteras 97.6 0.00031 6.8E-09 48.5 7.0 42 53-94 76-117 (212)
8 PF11288 DUF3089: Protein of u 97.3 0.00035 7.6E-09 49.2 4.4 40 53-93 77-116 (207)
9 PF08237 PE-PPE: PE-PPE domain 97.2 0.0011 2.4E-08 47.1 5.6 42 54-95 27-71 (225)
10 PF00326 Peptidase_S9: Prolyl 97.2 0.00048 1E-08 47.3 3.4 21 72-92 64-84 (213)
11 PF00561 Abhydrolase_1: alpha/ 96.9 0.0037 8E-08 42.0 5.7 41 53-95 27-67 (230)
12 PF01764 Lipase_3: Lipase (cla 96.8 0.0047 1E-07 39.5 5.8 38 58-95 49-87 (140)
13 PF01083 Cutinase: Cutinase; 96.7 0.0052 1.1E-07 42.0 5.6 40 53-92 61-101 (179)
14 cd00741 Lipase Lipase. Lipase 96.7 0.0057 1.2E-07 40.1 5.6 23 73-95 29-51 (153)
15 PF10503 Esterase_phd: Esteras 96.7 0.0079 1.7E-07 42.6 6.5 21 73-93 98-118 (220)
16 PRK10566 esterase; Provisional 96.6 0.0034 7.3E-08 43.7 3.9 22 73-94 108-129 (249)
17 PF12697 Abhydrolase_6: Alpha/ 96.5 0.011 2.3E-07 39.0 6.0 42 53-94 46-88 (228)
18 TIGR03611 RutD pyrimidine util 96.4 0.01 2.3E-07 40.3 5.4 41 54-94 61-102 (257)
19 TIGR01250 pro_imino_pep_2 prol 96.1 0.019 4E-07 39.6 5.6 40 55-94 78-118 (288)
20 TIGR02427 protocat_pcaD 3-oxoa 96.0 0.02 4.4E-07 38.4 5.2 39 55-93 61-100 (251)
21 PF07859 Abhydrolase_3: alpha/ 96.0 0.02 4.4E-07 38.8 5.2 46 51-96 47-95 (211)
22 PRK10673 acyl-CoA esterase; Pr 95.8 0.028 6.1E-07 38.8 5.3 40 55-94 63-103 (255)
23 TIGR03056 bchO_mg_che_rel puta 95.8 0.024 5.2E-07 39.3 5.0 41 54-94 76-117 (278)
24 PRK11126 2-succinyl-6-hydroxy- 95.7 0.037 7.9E-07 38.0 5.7 40 55-94 48-88 (242)
25 PRK13604 luxD acyl transferase 95.7 0.021 4.6E-07 42.4 4.6 36 53-91 92-127 (307)
26 PRK11071 esterase YqiA; Provis 95.7 0.035 7.6E-07 38.0 5.4 38 57-94 45-83 (190)
27 PRK08775 homoserine O-acetyltr 95.6 0.033 7.2E-07 41.0 5.4 40 55-94 119-160 (343)
28 TIGR01849 PHB_depoly_PhaZ poly 95.6 0.028 6.2E-07 43.3 5.0 42 53-94 149-190 (406)
29 PF12695 Abhydrolase_5: Alpha/ 95.5 0.041 8.9E-07 34.7 5.1 22 72-93 61-82 (145)
30 TIGR03695 menH_SHCHC 2-succiny 95.5 0.043 9.3E-07 36.6 5.4 41 54-94 50-92 (251)
31 PF01738 DLH: Dienelactone hyd 95.5 0.032 6.9E-07 38.4 4.6 30 64-93 86-119 (218)
32 PLN02824 hydrolase, alpha/beta 95.4 0.043 9.4E-07 39.1 5.3 41 54-94 83-124 (294)
33 PRK10162 acetyl esterase; Prov 95.4 0.04 8.6E-07 40.5 5.2 41 53-93 132-175 (318)
34 cd00312 Esterase_lipase Estera 95.3 0.029 6.3E-07 43.2 4.4 41 53-93 154-197 (493)
35 COG0412 Dienelactone hydrolase 95.3 0.023 4.9E-07 40.5 3.4 22 72-93 112-133 (236)
36 PLN02965 Probable pheophorbida 95.2 0.044 9.6E-07 38.4 4.8 39 55-93 53-93 (255)
37 PF01674 Lipase_2: Lipase (cla 95.2 0.061 1.3E-06 38.1 5.3 36 58-93 57-96 (219)
38 PF08840 BAAT_C: BAAT / Acyl-C 95.1 0.026 5.7E-07 39.4 3.3 41 54-94 4-44 (213)
39 PLN02606 palmitoyl-protein thi 95.1 0.034 7.5E-07 41.3 4.0 40 53-93 77-116 (306)
40 PF09752 DUF2048: Uncharacteri 95.0 0.042 9E-07 41.6 4.3 34 63-96 165-199 (348)
41 PF11187 DUF2974: Protein of u 95.0 0.079 1.7E-06 37.6 5.4 41 53-93 65-105 (224)
42 COG3319 Thioesterase domains o 94.9 0.047 1E-06 39.6 4.2 43 53-96 44-89 (257)
43 PF07819 PGAP1: PGAP1-like pro 94.9 0.074 1.6E-06 37.6 5.1 42 53-94 63-107 (225)
44 cd00519 Lipase_3 Lipase (class 94.9 0.085 1.8E-06 36.8 5.4 23 73-95 129-151 (229)
45 PLN02633 palmitoyl protein thi 94.8 0.046 9.9E-07 40.8 4.1 40 53-93 76-115 (314)
46 TIGR03101 hydr2_PEP hydrolase, 94.8 0.11 2.3E-06 37.8 5.8 31 63-93 89-120 (266)
47 PRK06489 hypothetical protein; 94.8 0.078 1.7E-06 39.4 5.2 40 55-94 134-176 (360)
48 PF05448 AXE1: Acetyl xylan es 94.8 0.024 5.2E-07 42.2 2.5 24 72-95 175-198 (320)
49 PLN02211 methyl indole-3-aceta 94.7 0.083 1.8E-06 37.9 5.2 40 54-93 67-108 (273)
50 PRK06765 homoserine O-acetyltr 94.7 0.088 1.9E-06 40.1 5.5 40 55-94 142-183 (389)
51 PRK03592 haloalkane dehalogena 94.7 0.095 2.1E-06 37.4 5.4 40 55-94 75-115 (295)
52 TIGR02821 fghA_ester_D S-formy 94.6 0.098 2.1E-06 37.5 5.3 34 60-93 122-159 (275)
53 PRK00870 haloalkane dehalogena 94.6 0.1 2.2E-06 37.5 5.3 39 55-93 97-136 (302)
54 PF00975 Thioesterase: Thioest 94.5 0.12 2.6E-06 35.3 5.5 43 53-96 45-90 (229)
55 PRK14875 acetoin dehydrogenase 94.5 0.095 2.1E-06 38.3 5.1 40 54-93 178-218 (371)
56 TIGR02240 PHA_depoly_arom poly 94.5 0.12 2.6E-06 36.6 5.5 39 55-93 73-112 (276)
57 PLN02442 S-formylglutathione h 94.5 0.11 2.3E-06 37.6 5.2 23 72-94 143-165 (283)
58 TIGR03343 biphenyl_bphD 2-hydr 94.4 0.076 1.7E-06 37.2 4.2 35 60-94 88-123 (282)
59 PLN02872 triacylglycerol lipas 94.3 0.081 1.8E-06 40.5 4.5 20 71-90 159-178 (395)
60 PRK10749 lysophospholipase L2; 94.2 0.15 3.3E-06 37.4 5.7 40 55-94 109-153 (330)
61 PLN02578 hydrolase 94.1 0.13 2.8E-06 38.2 5.2 39 56-94 135-174 (354)
62 TIGR01392 homoserO_Ac_trn homo 94.1 0.15 3.3E-06 37.6 5.5 40 55-94 108-149 (351)
63 cd00707 Pancreat_lipase_like P 94.0 0.1 2.2E-06 37.8 4.3 22 73-94 113-134 (275)
64 COG0657 Aes Esterase/lipase [L 93.9 0.14 3E-06 37.2 4.9 45 52-96 129-176 (312)
65 PRK00175 metX homoserine O-ace 93.9 0.17 3.7E-06 38.0 5.5 40 55-94 128-169 (379)
66 TIGR01836 PHA_synth_III_C poly 93.8 0.11 2.4E-06 38.4 4.3 23 72-94 136-158 (350)
67 PLN02847 triacylglycerol lipas 93.8 0.19 4.1E-06 40.7 5.7 27 74-100 253-279 (633)
68 TIGR01738 bioH putative pimelo 93.6 0.16 3.6E-06 33.8 4.6 35 56-93 52-86 (245)
69 PRK10985 putative hydrolase; P 93.6 0.15 3.2E-06 37.4 4.6 22 73-94 132-153 (324)
70 PLN02408 phospholipase A1 93.3 0.19 4.1E-06 38.3 4.9 36 59-94 184-222 (365)
71 COG3208 GrsT Predicted thioest 93.3 0.17 3.6E-06 36.6 4.3 44 54-98 54-100 (244)
72 PRK05077 frsA fermentation/res 93.3 0.23 4.9E-06 38.1 5.3 34 61-94 250-287 (414)
73 PF00756 Esterase: Putative es 93.2 0.19 4.2E-06 35.0 4.5 34 61-94 100-137 (251)
74 COG1647 Esterase/lipase [Gener 93.2 0.25 5.4E-06 35.5 5.0 24 72-95 85-108 (243)
75 PLN02894 hydrolase, alpha/beta 93.2 0.19 4.1E-06 38.2 4.8 34 61-94 164-198 (402)
76 PLN02298 hydrolase, alpha/beta 93.1 0.18 3.9E-06 36.7 4.4 20 74-93 136-155 (330)
77 PF12715 Abhydrolase_7: Abhydr 93.1 0.1 2.3E-06 40.0 3.1 24 73-96 227-250 (390)
78 PLN02385 hydrolase; alpha/beta 93.0 0.21 4.6E-06 36.8 4.7 40 55-94 138-184 (349)
79 PF02089 Palm_thioest: Palmito 93.0 0.16 3.4E-06 37.4 3.9 38 55-92 60-100 (279)
80 KOG2541|consensus 93.0 0.15 3.3E-06 37.6 3.8 40 52-92 73-112 (296)
81 TIGR01249 pro_imino_pep_1 prol 93.0 0.31 6.8E-06 35.2 5.5 39 56-94 78-117 (306)
82 PLN00021 chlorophyllase 92.9 0.24 5.2E-06 36.7 4.8 22 73-94 127-148 (313)
83 PLN02454 triacylglycerol lipas 92.7 0.28 6E-06 38.0 5.1 36 58-93 211-249 (414)
84 PF05728 UPF0227: Uncharacteri 92.6 0.43 9.2E-06 33.0 5.5 44 53-96 39-83 (187)
85 PLN02679 hydrolase, alpha/beta 92.5 0.35 7.6E-06 36.0 5.3 38 55-92 137-175 (360)
86 cd07227 Pat_Fungal_NTE1 Fungal 92.5 0.28 6.2E-06 35.7 4.7 30 63-92 28-58 (269)
87 PHA02857 monoglyceride lipase; 92.4 0.38 8.3E-06 33.8 5.2 21 74-94 99-119 (276)
88 PLN02511 hydrolase 92.3 0.26 5.7E-06 37.3 4.5 23 73-95 174-196 (388)
89 TIGR01838 PHA_synth_I poly(R)- 91.8 0.34 7.4E-06 38.6 4.7 32 55-88 247-278 (532)
90 PLN02733 phosphatidylcholine-s 91.8 0.5 1.1E-05 36.8 5.5 22 72-93 162-183 (440)
91 PRK07581 hypothetical protein; 91.6 0.52 1.1E-05 34.5 5.2 29 66-94 116-146 (339)
92 PLN02571 triacylglycerol lipas 91.5 0.33 7.2E-06 37.6 4.2 37 57-93 208-247 (413)
93 PLN02802 triacylglycerol lipas 91.4 0.4 8.6E-06 38.1 4.6 36 59-94 314-352 (509)
94 KOG1552|consensus 91.4 0.23 4.9E-06 36.2 3.0 43 51-94 110-152 (258)
95 PF00135 COesterase: Carboxyle 91.2 0.58 1.3E-05 35.9 5.4 47 53-99 186-235 (535)
96 PRK10439 enterobactin/ferric e 91.2 0.39 8.4E-06 37.0 4.4 22 73-94 289-310 (411)
97 PLN02310 triacylglycerol lipas 91.2 0.48 1E-05 36.7 4.8 22 73-94 210-231 (405)
98 COG2267 PldB Lysophospholipase 91.1 0.68 1.5E-05 34.0 5.4 41 54-94 87-129 (298)
99 PLN02980 2-oxoglutarate decarb 91.1 0.47 1E-05 42.4 5.3 40 55-94 1427-1467(1655)
100 TIGR01607 PST-A Plasmodium sub 91.0 0.45 9.8E-06 35.2 4.5 20 74-93 144-163 (332)
101 cd07225 Pat_PNPLA6_PNPLA7 Pata 91.0 0.37 8.1E-06 35.7 4.0 31 62-92 32-63 (306)
102 PLN02934 triacylglycerol lipas 90.9 0.54 1.2E-05 37.4 4.9 34 59-92 307-341 (515)
103 PRK03204 haloalkane dehalogena 90.8 0.62 1.4E-05 33.4 4.9 39 56-94 84-123 (286)
104 TIGR01839 PHA_synth_II poly(R) 90.8 0.37 8.1E-06 38.7 4.0 17 72-88 288-304 (560)
105 COG3243 PhaC Poly(3-hydroxyalk 90.8 0.35 7.6E-06 37.7 3.7 41 54-96 165-205 (445)
106 KOG2564|consensus 90.6 0.32 6.9E-06 36.3 3.3 30 64-93 138-167 (343)
107 TIGR00976 /NonD putative hydro 90.5 0.4 8.6E-06 37.9 4.0 21 73-93 98-118 (550)
108 TIGR03100 hydr1_PEP hydrolase, 90.5 0.98 2.1E-05 32.3 5.7 21 72-92 100-120 (274)
109 COG1506 DAP2 Dipeptidyl aminop 90.3 0.26 5.6E-06 39.7 2.8 39 55-94 453-495 (620)
110 PLN02324 triacylglycerol lipas 90.3 0.47 1E-05 36.8 4.0 35 59-93 199-236 (415)
111 PF10230 DUF2305: Uncharacteri 90.3 0.9 2E-05 32.8 5.4 42 53-94 62-106 (266)
112 PRK05855 short chain dehydroge 90.2 0.67 1.5E-05 35.8 5.0 38 55-92 75-114 (582)
113 PRK10349 carboxylesterase BioH 90.2 0.61 1.3E-05 32.4 4.3 21 73-93 75-95 (256)
114 cd07228 Pat_NTE_like_bacteria 90.1 0.57 1.2E-05 31.4 4.0 29 65-93 20-49 (175)
115 PLN00413 triacylglycerol lipas 90.0 0.74 1.6E-05 36.3 5.0 34 59-92 270-304 (479)
116 TIGR03230 lipo_lipase lipoprot 89.8 0.83 1.8E-05 35.7 5.1 21 73-93 120-140 (442)
117 PF06500 DUF1100: Alpha/beta h 89.7 1 2.3E-05 34.9 5.5 38 57-94 242-283 (411)
118 COG2945 Predicted hydrolase of 89.7 0.41 8.8E-06 33.8 3.0 44 52-96 84-127 (210)
119 PLN03087 BODYGUARD 1 domain co 89.7 0.99 2.1E-05 35.6 5.5 40 55-94 255-296 (481)
120 PF12740 Chlorophyllase2: Chlo 89.6 0.53 1.1E-05 34.3 3.7 44 52-95 63-114 (259)
121 PLN03037 lipase class 3 family 89.5 0.65 1.4E-05 37.0 4.3 20 74-93 320-339 (525)
122 COG3458 Acetyl esterase (deace 89.5 0.17 3.7E-06 37.5 1.1 25 72-96 176-200 (321)
123 PLN02162 triacylglycerol lipas 89.4 0.99 2.1E-05 35.6 5.3 31 61-91 266-297 (475)
124 PLN02753 triacylglycerol lipas 89.4 0.78 1.7E-05 36.6 4.7 37 57-93 291-333 (531)
125 PLN02719 triacylglycerol lipas 89.4 0.79 1.7E-05 36.5 4.7 35 59-93 279-319 (518)
126 PLN02652 hydrolase; alpha/beta 89.3 1.4 3E-05 33.7 5.9 19 73-91 209-227 (395)
127 PF12048 DUF3530: Protein of u 89.0 1.6 3.5E-05 32.3 6.0 44 53-96 173-217 (310)
128 PF02450 LCAT: Lecithin:choles 88.9 0.73 1.6E-05 35.1 4.2 38 57-94 100-141 (389)
129 KOG1838|consensus 88.8 0.75 1.6E-05 35.6 4.1 45 51-97 179-223 (409)
130 COG0596 MhpC Predicted hydrola 88.7 1 2.2E-05 29.5 4.3 36 60-95 75-111 (282)
131 PF03583 LIP: Secretory lipase 88.6 0.73 1.6E-05 33.7 3.9 21 72-92 71-91 (290)
132 KOG2624|consensus 88.5 0.28 6.2E-06 37.8 1.7 39 53-93 144-182 (403)
133 PRK10279 hypothetical protein; 88.5 0.77 1.7E-05 34.0 4.0 30 63-92 23-53 (300)
134 KOG1454|consensus 88.4 1.1 2.4E-05 33.4 4.8 41 53-94 108-150 (326)
135 PF10340 DUF2424: Protein of u 88.2 1.3 2.9E-05 33.9 5.2 43 53-95 175-218 (374)
136 PRK07868 acyl-CoA synthetase; 87.8 1.5 3.2E-05 37.3 5.6 39 55-93 120-162 (994)
137 KOG3724|consensus 87.6 1.2 2.5E-05 37.6 4.7 42 52-93 155-203 (973)
138 cd07213 Pat17_PNPLA8_PNPLA9_li 87.4 0.92 2E-05 33.0 3.8 20 73-92 35-54 (288)
139 cd07198 Patatin Patatin-like p 87.4 1.1 2.5E-05 29.8 4.0 31 63-93 16-47 (172)
140 PF06057 VirJ: Bacterial virul 86.7 1.5 3.3E-05 30.6 4.4 38 53-90 47-86 (192)
141 PLN03084 alpha/beta hydrolase 86.4 2 4.2E-05 32.8 5.2 40 54-93 178-218 (383)
142 PF09994 DUF2235: Uncharacteri 86.3 1.3 2.7E-05 32.3 3.9 40 53-93 74-113 (277)
143 COG3509 LpqC Poly(3-hydroxybut 85.5 3 6.6E-05 31.2 5.6 21 73-93 145-165 (312)
144 KOG3043|consensus 84.4 0.26 5.6E-06 35.5 -0.4 36 58-93 104-141 (242)
145 PF00151 Lipase: Lipase; Inte 84.1 3.6 7.8E-05 30.8 5.6 23 73-95 151-173 (331)
146 COG3946 VirJ Type IV secretory 83.7 1.6 3.4E-05 34.1 3.6 35 51-85 303-339 (456)
147 PLN02761 lipase class 3 family 83.4 2.1 4.6E-05 34.2 4.3 20 74-93 296-315 (527)
148 KOG1455|consensus 82.9 2.8 6.1E-05 31.4 4.5 19 74-92 131-149 (313)
149 cd07210 Pat_hypo_W_succinogene 82.6 2.5 5.4E-05 29.7 4.1 30 63-92 18-48 (221)
150 PRK04940 hypothetical protein; 82.4 5 0.00011 27.7 5.3 41 56-96 39-84 (180)
151 PF06821 Ser_hydrolase: Serine 82.4 2.8 6.2E-05 28.3 4.2 37 55-91 38-74 (171)
152 KOG1516|consensus 82.3 2.9 6.4E-05 32.7 4.7 40 53-92 173-215 (545)
153 cd07207 Pat_ExoU_VipD_like Exo 82.2 3.2 7E-05 27.9 4.4 30 64-93 18-48 (194)
154 COG1752 RssA Predicted esteras 81.9 2.3 4.9E-05 31.2 3.8 32 61-92 27-59 (306)
155 cd07208 Pat_hypo_Ecoli_yjju_li 80.7 3.9 8.5E-05 29.1 4.6 23 72-94 27-49 (266)
156 PF05057 DUF676: Putative seri 80.3 5.1 0.00011 27.9 4.9 42 53-94 52-100 (217)
157 cd07209 Pat_hypo_Ecoli_Z1214_l 79.7 4.5 9.7E-05 28.1 4.5 29 65-93 18-47 (215)
158 COG3150 Predicted esterase [Ge 79.6 6 0.00013 27.5 4.9 42 53-94 39-81 (191)
159 cd07212 Pat_PNPLA9 Patatin-lik 79.0 4.4 9.4E-05 30.1 4.5 19 73-91 33-51 (312)
160 cd07221 Pat_PNPLA3 Patatin-lik 78.7 4 8.7E-05 29.4 4.1 31 63-93 18-53 (252)
161 COG4667 Predicted esterase of 78.5 3.8 8.2E-05 30.3 3.9 34 61-94 28-62 (292)
162 KOG4569|consensus 78.2 3.8 8.2E-05 30.7 4.0 23 73-95 172-194 (336)
163 PF06028 DUF915: Alpha/beta hy 78.1 8.9 0.00019 27.8 5.7 42 55-96 81-127 (255)
164 cd07205 Pat_PNPLA6_PNPLA7_NTE1 77.8 5.9 0.00013 26.3 4.5 29 65-93 20-49 (175)
165 COG0429 Predicted hydrolase of 77.0 6.9 0.00015 29.8 5.0 36 60-95 134-171 (345)
166 PF05990 DUF900: Alpha/beta hy 76.5 9.5 0.00021 27.0 5.5 42 54-95 70-116 (233)
167 cd07222 Pat_PNPLA4 Patatin-lik 76.3 4.8 0.0001 28.7 3.9 29 63-91 17-50 (246)
168 smart00824 PKS_TE Thioesterase 76.1 9.4 0.0002 24.8 5.1 23 71-94 64-86 (212)
169 KOG2369|consensus 75.9 4.8 0.0001 31.8 4.0 45 52-96 157-206 (473)
170 KOG2382|consensus 75.8 4.4 9.6E-05 30.4 3.7 40 51-90 100-142 (315)
171 COG1075 LipA Predicted acetylt 75.6 4.3 9.4E-05 30.3 3.7 41 53-93 107-148 (336)
172 KOG4627|consensus 75.5 4.9 0.00011 29.0 3.7 26 72-97 136-161 (270)
173 COG2272 PnbA Carboxylesterase 75.2 4 8.6E-05 32.4 3.5 44 53-96 158-204 (491)
174 cd07214 Pat17_isozyme_like Pat 75.0 6.5 0.00014 29.6 4.5 21 73-93 44-64 (349)
175 PRK10252 entF enterobactin syn 75.0 7.2 0.00016 33.5 5.2 40 54-94 1113-1155(1296)
176 cd01819 Patatin_and_cPLA2 Pata 75.0 8.5 0.00018 25.3 4.6 19 72-90 28-46 (155)
177 PRK10115 protease 2; Provision 74.9 3.6 7.7E-05 33.8 3.3 22 72-93 524-545 (686)
178 PF02129 Peptidase_S15: X-Pro 74.8 4.7 0.0001 28.7 3.6 41 52-93 82-122 (272)
179 PRK01544 bifunctional N5-gluta 74.0 7.5 0.00016 30.8 4.8 77 8-91 206-283 (506)
180 PF03403 PAF-AH_p_II: Platelet 73.7 4.3 9.2E-05 31.0 3.2 20 74-93 230-249 (379)
181 cd07217 Pat17_PNPLA8_PNPLA9_li 73.3 6.5 0.00014 29.6 4.1 20 72-91 41-60 (344)
182 PF08538 DUF1749: Protein of u 72.9 9.6 0.00021 28.5 4.8 45 51-95 85-131 (303)
183 KOG1202|consensus 72.4 7.3 0.00016 35.0 4.5 42 54-96 2162-2206(2376)
184 PF05277 DUF726: Protein of un 72.0 14 0.0003 28.1 5.6 25 74-98 222-246 (345)
185 cd07219 Pat_PNPLA1 Patatin-lik 71.4 7.3 0.00016 30.1 4.0 30 63-92 30-64 (382)
186 cd07220 Pat_PNPLA2 Patatin-lik 71.4 7.4 0.00016 28.0 3.9 33 62-94 21-58 (249)
187 PRK09177 xanthine-guanine phos 70.4 7.9 0.00017 25.8 3.6 41 52-92 11-51 (156)
188 cd07211 Pat_PNPLA8 Patatin-lik 70.4 9.3 0.0002 27.9 4.3 19 73-91 42-60 (308)
189 KOG4409|consensus 70.0 11 0.00025 28.8 4.7 37 58-94 145-182 (365)
190 COG4099 Predicted peptidase [G 69.6 8.2 0.00018 29.3 3.8 38 55-92 248-289 (387)
191 cd07229 Pat_TGL3_like Triacylg 69.4 8.1 0.00018 29.8 3.9 30 63-92 101-131 (391)
192 COG2021 MET2 Homoserine acetyl 69.3 10 0.00022 29.1 4.4 40 55-94 128-169 (368)
193 cd07218 Pat_iPLA2 Calcium-inde 68.9 9.4 0.0002 27.4 4.0 32 63-94 18-52 (245)
194 PF05677 DUF818: Chlamydia CHL 67.6 16 0.00035 28.0 5.1 42 52-93 190-236 (365)
195 cd07232 Pat_PLPL Patain-like p 67.2 11 0.00024 29.1 4.3 31 62-92 85-115 (407)
196 PLN02517 phosphatidylcholine-s 66.9 17 0.00037 29.9 5.4 37 57-93 193-234 (642)
197 cd07206 Pat_TGL3-4-5_SDP1 Tria 66.6 14 0.0003 27.6 4.5 31 63-93 88-118 (298)
198 PF06342 DUF1057: Alpha/beta h 66.6 14 0.00031 27.6 4.5 38 56-93 86-125 (297)
199 COG4814 Uncharacterized protei 66.4 16 0.00035 27.0 4.7 46 54-99 116-163 (288)
200 PF12242 Eno-Rase_NADH_b: NAD( 65.0 18 0.00039 21.7 4.0 41 53-93 16-61 (78)
201 COG4782 Uncharacterized protei 64.9 24 0.00051 27.3 5.5 41 54-94 171-213 (377)
202 cd07199 Pat17_PNPLA8_PNPLA9_li 64.8 14 0.0003 26.2 4.2 20 73-92 35-54 (258)
203 cd07216 Pat17_PNPLA8_PNPLA9_li 64.3 11 0.00024 27.6 3.7 19 73-91 43-61 (309)
204 cd07230 Pat_TGL4-5_like Triacy 64.1 15 0.00032 28.5 4.5 30 63-92 91-121 (421)
205 PF10561 UPF0565: Uncharacteri 63.9 6.8 0.00015 29.3 2.5 22 73-94 194-215 (303)
206 TIGR03607 patatin-related prot 63.9 12 0.00026 31.3 4.1 24 68-91 62-85 (739)
207 cd07224 Pat_like Patatin-like 62.8 15 0.00032 25.9 4.0 32 63-94 17-51 (233)
208 KOG1515|consensus 62.5 19 0.0004 27.3 4.6 43 53-95 143-189 (336)
209 PRK05371 x-prolyl-dipeptidyl a 62.0 14 0.0003 30.9 4.2 42 51-93 303-359 (767)
210 PF00782 DSPc: Dual specificit 62.0 14 0.00031 23.0 3.5 44 51-94 54-99 (133)
211 cd07204 Pat_PNPLA_like Patatin 61.1 16 0.00036 25.9 4.0 32 63-94 17-53 (243)
212 COG0627 Predicted esterase [Ge 60.2 12 0.00025 28.1 3.2 22 73-94 153-174 (316)
213 PF12664 DUF3789: Protein of u 59.9 1.3 2.8E-05 22.4 -1.3 22 76-97 6-27 (34)
214 KOG3975|consensus 59.7 19 0.00041 26.7 4.1 41 52-92 87-130 (301)
215 cd07215 Pat17_PNPLA8_PNPLA9_li 59.4 19 0.0004 26.7 4.2 19 73-91 41-59 (329)
216 COG4188 Predicted dienelactone 59.2 11 0.00024 28.9 2.9 19 73-91 160-178 (365)
217 COG3673 Uncharacterized conser 58.4 20 0.00044 27.5 4.1 24 71-94 121-144 (423)
218 COG1770 PtrB Protease II [Amin 58.0 12 0.00027 30.9 3.2 61 33-93 488-548 (682)
219 TIGR00536 hemK_fam HemK family 57.6 34 0.00075 24.7 5.2 38 53-90 220-257 (284)
220 PF01734 Patatin: Patatin-like 57.4 15 0.00032 23.5 3.1 26 71-96 26-51 (204)
221 KOG2968|consensus 57.4 12 0.00026 32.3 3.1 31 62-92 856-887 (1158)
222 PTZ00472 serine carboxypeptida 56.1 50 0.0011 25.9 6.2 38 56-93 151-192 (462)
223 smart00827 PKS_AT Acyl transfe 56.0 19 0.00042 25.7 3.7 27 64-90 73-100 (298)
224 PRK14966 unknown domain/N5-glu 55.8 30 0.00066 27.1 4.9 39 53-91 357-395 (423)
225 KOG4231|consensus 55.7 8.4 0.00018 31.3 1.8 35 59-93 432-471 (763)
226 PF07224 Chlorophyllase: Chlor 54.7 31 0.00067 25.8 4.5 43 52-94 92-142 (307)
227 COG3545 Predicted esterase of 54.6 36 0.00078 23.7 4.6 41 54-95 41-82 (181)
228 cd07231 Pat_SDP1-like Sugar-De 54.6 27 0.0006 26.4 4.3 29 64-92 87-116 (323)
229 TIGR03704 PrmC_rel_meth putati 54.4 28 0.00061 24.8 4.3 37 53-89 192-228 (251)
230 PF11339 DUF3141: Protein of u 54.1 60 0.0013 26.5 6.3 52 40-94 108-162 (581)
231 KOG2385|consensus 52.9 37 0.00081 27.6 5.0 24 73-96 448-471 (633)
232 PF03575 Peptidase_S51: Peptid 51.6 15 0.00033 24.0 2.4 13 74-86 70-82 (154)
233 KOG2237|consensus 51.0 14 0.00031 30.5 2.5 58 35-92 512-569 (712)
234 TIGR03502 lipase_Pla1_cef extr 50.1 43 0.00094 28.4 5.2 20 74-93 557-576 (792)
235 COG2819 Predicted hydrolase of 49.2 22 0.00048 26.1 3.1 21 73-93 138-158 (264)
236 PF13407 Peripla_BP_4: Peripla 49.0 62 0.0014 22.1 5.3 39 54-93 165-203 (257)
237 KOG1551|consensus 47.8 15 0.00032 27.6 2.0 23 74-96 197-219 (371)
238 KOG4667|consensus 47.8 33 0.00071 25.0 3.7 37 58-94 90-127 (269)
239 TIGR03131 malonate_mdcH malona 47.1 33 0.00072 24.6 3.8 27 64-90 67-94 (295)
240 PF06792 UPF0261: Uncharacteri 46.7 48 0.001 25.8 4.7 25 69-93 90-116 (403)
241 cd06278 PBP1_LacI_like_2 Ligan 46.6 68 0.0015 21.7 5.2 37 57-93 159-195 (266)
242 smart00195 DSPc Dual specifici 45.7 34 0.00073 21.5 3.3 41 53-93 61-103 (138)
243 cd01541 PBP1_AraR Ligand-bindi 45.7 66 0.0014 22.1 5.0 37 57-93 168-204 (273)
244 KOG4178|consensus 45.5 56 0.0012 24.7 4.8 42 53-94 93-135 (322)
245 PF06259 Abhydrolase_8: Alpha/ 45.3 65 0.0014 22.0 4.8 37 56-92 87-129 (177)
246 COG3621 Patatin [General funct 45.2 34 0.00075 26.3 3.6 32 61-92 25-62 (394)
247 PF02540 NAD_synthase: NAD syn 45.1 67 0.0015 22.9 5.0 28 56-83 2-29 (242)
248 PF00698 Acyl_transf_1: Acyl t 44.9 32 0.00068 25.1 3.4 28 63-90 74-102 (318)
249 cd06290 PBP1_LacI_like_9 Ligan 44.6 69 0.0015 21.9 4.9 37 58-94 162-198 (265)
250 cd00127 DSPc Dual specificity 44.2 44 0.00096 20.7 3.7 42 53-94 64-107 (139)
251 cd06289 PBP1_MalI_like Ligand- 44.1 71 0.0015 21.7 4.9 37 57-93 163-199 (268)
252 COG1879 RbsB ABC-type sugar tr 43.4 75 0.0016 22.9 5.1 40 53-92 200-239 (322)
253 PF00450 Peptidase_S10: Serine 43.3 62 0.0013 24.0 4.8 40 53-92 113-156 (415)
254 COG0031 CysK Cysteine synthase 43.0 59 0.0013 24.3 4.5 38 55-95 243-280 (300)
255 KOG4540|consensus 42.5 47 0.001 25.3 3.9 21 73-93 277-297 (425)
256 COG5153 CVT17 Putative lipase 42.5 47 0.001 25.3 3.9 21 73-93 277-297 (425)
257 TIGR03573 WbuX N-acetyl sugar 41.7 34 0.00075 25.6 3.2 28 56-83 41-70 (343)
258 COG4451 RbcS Ribulose bisphosp 41.1 1E+02 0.0022 20.1 4.9 27 53-79 63-90 (127)
259 PRK02399 hypothetical protein; 41.0 74 0.0016 24.9 4.9 25 69-93 92-118 (406)
260 KOG2476|consensus 40.4 38 0.00082 27.1 3.3 29 53-81 15-43 (528)
261 PF04937 DUF659: Protein of un 40.3 23 0.0005 23.6 1.9 41 61-101 80-122 (153)
262 cd06306 PBP1_TorT-like TorT-li 39.4 1E+02 0.0022 21.3 5.2 37 55-91 167-203 (268)
263 cd06288 PBP1_sucrose_transcrip 38.6 1.2E+02 0.0027 20.6 5.5 37 57-93 162-198 (269)
264 TIGR00128 fabD malonyl CoA-acy 38.5 49 0.0011 23.4 3.5 26 65-90 74-101 (290)
265 PRK09328 N5-glutamine S-adenos 37.8 1.1E+02 0.0025 21.4 5.3 38 53-90 214-251 (275)
266 cd01575 PBP1_GntR Ligand-bindi 37.7 1.2E+02 0.0025 20.6 5.2 37 57-93 162-198 (268)
267 COG2236 Predicted phosphoribos 37.1 62 0.0014 22.5 3.7 41 52-92 8-49 (192)
268 COG3571 Predicted hydrolase of 36.8 48 0.001 23.1 3.0 25 71-96 89-113 (213)
269 PRK05282 (alpha)-aspartyl dipe 36.4 44 0.00096 23.9 2.9 24 63-89 106-129 (233)
270 cd01543 PBP1_XylR Ligand-bindi 36.2 1.3E+02 0.0028 20.6 5.3 37 57-93 156-192 (265)
271 cd06284 PBP1_LacI_like_6 Ligan 35.9 1.3E+02 0.0028 20.3 5.2 38 56-93 160-197 (267)
272 COG0740 ClpP Protease subunit 35.8 99 0.0022 21.8 4.5 39 61-99 75-113 (200)
273 COG2382 Fes Enterochelin ester 35.6 24 0.00053 26.4 1.5 20 74-93 179-198 (299)
274 COG0742 N6-adenine-specific me 35.3 24 0.00052 24.6 1.4 12 9-20 115-126 (187)
275 PF11524 SeleniumBinding: Sele 35.1 64 0.0014 19.3 3.0 26 54-80 31-56 (81)
276 KOG1283|consensus 34.1 96 0.0021 24.0 4.5 41 53-93 99-143 (414)
277 cd06314 PBP1_tmGBP Periplasmic 34.1 1.1E+02 0.0023 21.1 4.6 32 56-87 163-194 (271)
278 PF00156 Pribosyltran: Phospho 33.6 1.1E+02 0.0024 18.5 4.9 40 52-91 6-46 (125)
279 cd01545 PBP1_SalR Ligand-bindi 32.1 1.6E+02 0.0034 20.0 5.2 37 57-93 164-200 (270)
280 cd06324 PBP1_ABC_sugar_binding 31.8 1.7E+02 0.0037 20.7 5.5 37 56-92 186-222 (305)
281 PF05705 DUF829: Eukaryotic pr 31.5 1.6E+02 0.0035 20.3 5.1 38 54-91 45-86 (240)
282 TIGR03884 sel_bind_Methan sele 31.5 1E+02 0.0022 18.3 3.4 26 54-80 25-50 (74)
283 cd06285 PBP1_LacI_like_7 Ligan 31.2 1.6E+02 0.0034 20.1 5.1 38 56-93 159-196 (265)
284 PRK10703 DNA-binding transcrip 30.9 1.6E+02 0.0034 21.1 5.2 37 57-93 224-260 (341)
285 cd06298 PBP1_CcpA_like Ligand- 30.4 1.5E+02 0.0032 20.1 4.8 35 57-92 163-197 (268)
286 PRK05479 ketol-acid reductoiso 30.3 54 0.0012 24.7 2.7 20 71-90 17-37 (330)
287 cd03129 GAT1_Peptidase_E_like 30.3 84 0.0018 21.5 3.5 26 61-89 105-130 (210)
288 PRK10014 DNA-binding transcrip 30.0 1.5E+02 0.0032 21.2 4.9 36 58-93 229-264 (342)
289 KOG2281|consensus 29.6 62 0.0013 27.3 3.0 22 72-93 727-748 (867)
290 KOG4436|consensus 29.3 49 0.0011 28.3 2.5 39 55-93 255-293 (948)
291 cd06296 PBP1_CatR_like Ligand- 29.2 1.9E+02 0.0041 19.7 5.2 36 57-92 163-198 (270)
292 cd06274 PBP1_FruR Ligand bindi 29.2 1.9E+02 0.0041 19.7 5.3 38 56-93 161-199 (264)
293 PF14639 YqgF: Holliday-juncti 28.6 96 0.0021 20.6 3.4 35 54-88 46-81 (150)
294 PF02083 Urotensin_II: Urotens 27.8 21 0.00045 13.8 0.0 7 95-101 3-9 (12)
295 KOG2984|consensus 27.7 38 0.00082 24.5 1.4 41 53-93 94-135 (277)
296 cd03145 GAT1_cyanophycinase Ty 27.7 80 0.0017 22.0 3.0 26 62-90 109-134 (217)
297 cd06287 PBP1_LacI_like_8 Ligan 27.6 2.1E+02 0.0045 19.9 5.2 38 57-94 163-200 (269)
298 COG0371 GldA Glycerol dehydrog 27.4 74 0.0016 24.4 3.0 23 69-91 231-253 (360)
299 PRK12361 hypothetical protein; 27.3 89 0.0019 24.8 3.6 43 52-94 157-201 (547)
300 PF05577 Peptidase_S28: Serine 27.2 2.3E+02 0.0049 21.6 5.7 41 53-93 86-134 (434)
301 PRK10727 DNA-binding transcrip 27.2 2E+02 0.0043 20.7 5.2 36 58-93 223-258 (343)
302 PRK10440 iron-enterobactin tra 26.8 28 0.00061 26.2 0.6 18 75-92 92-109 (330)
303 PF08250 Sperm_act_pep: Sperm- 26.6 14 0.00031 13.5 -0.5 6 78-83 1-6 (10)
304 PF03602 Cons_hypoth95: Conser 26.5 37 0.0008 23.1 1.1 15 6-20 112-126 (183)
305 cd06286 PBP1_CcpB_like Ligand- 26.3 2.1E+02 0.0046 19.3 5.3 36 58-93 161-196 (260)
306 cd06275 PBP1_PurR Ligand-bindi 26.2 2.1E+02 0.0047 19.4 5.2 36 58-93 164-199 (269)
307 KOG2100|consensus 26.1 97 0.0021 26.0 3.7 40 55-94 588-630 (755)
308 KOG2183|consensus 26.0 1.1E+02 0.0023 24.5 3.6 39 53-91 141-186 (492)
309 PRK00455 pyrE orotate phosphor 26.0 1.7E+02 0.0037 20.0 4.4 40 53-92 44-84 (202)
310 PLN02213 sinapoylglucose-malat 25.6 2.8E+02 0.006 20.4 5.8 40 54-93 29-72 (319)
311 cd06267 PBP1_LacI_sugar_bindin 25.5 2.1E+02 0.0046 19.0 5.1 36 57-92 162-197 (264)
312 cd03144 GATase1_ScBLP_like Typ 25.4 43 0.00093 21.3 1.2 24 60-86 67-90 (114)
313 PRK09535 btuC corrinoid ABC tr 25.1 36 0.00077 26.1 0.9 18 75-92 128-145 (366)
314 PF04198 Sugar-bind: Putative 24.9 1.6E+02 0.0034 21.1 4.2 34 57-94 40-73 (255)
315 cd06291 PBP1_Qymf_like Ligand 24.7 2.3E+02 0.005 19.2 5.2 34 59-92 160-193 (265)
316 cd06271 PBP1_AglR_RafR_like Li 24.7 2.3E+02 0.0049 19.1 5.2 36 58-93 167-202 (268)
317 cd07380 MPP_CWF19_N Schizosacc 24.6 96 0.0021 20.5 2.8 29 54-82 8-38 (150)
318 PF04301 DUF452: Protein of un 24.4 85 0.0019 22.2 2.7 20 72-91 57-76 (213)
319 PF00101 RuBisCO_small: Ribulo 24.3 1.6E+02 0.0034 18.3 3.6 27 54-80 56-83 (99)
320 cd03527 RuBisCO_small Ribulose 24.3 1.9E+02 0.0041 18.0 5.0 42 36-80 42-84 (99)
321 TIGR02459 CbtB cobalt transpor 24.2 28 0.00062 19.8 0.2 11 74-84 33-43 (60)
322 PRK15408 autoinducer 2-binding 24.1 2E+02 0.0043 21.3 4.7 37 55-91 192-228 (336)
323 KOG3553|consensus 24.1 32 0.0007 21.9 0.5 19 67-85 27-45 (124)
324 COG3027 zapA Cell division pro 23.9 1.5E+02 0.0032 18.6 3.4 41 52-92 21-61 (105)
325 PF14784 ECIST_Cterm: C-termin 23.9 35 0.00076 22.2 0.6 13 9-21 14-26 (126)
326 PRK13710 plasmid maintenance p 23.6 1.1E+02 0.0024 17.9 2.7 20 54-73 46-65 (72)
327 PF07991 IlvN: Acetohydroxy ac 23.2 76 0.0017 21.7 2.2 18 72-89 5-23 (165)
328 cd06293 PBP1_LacI_like_11 Liga 23.2 2.5E+02 0.0054 19.1 5.0 36 57-92 162-197 (269)
329 PRK13794 hypothetical protein; 23.0 2E+02 0.0044 22.7 4.8 25 57-82 233-257 (479)
330 PRK11041 DNA-binding transcrip 22.9 2.6E+02 0.0056 19.5 5.0 37 57-93 198-234 (309)
331 PRK13795 hypothetical protein; 22.9 1.7E+02 0.0037 24.1 4.4 25 57-82 229-253 (636)
332 PRK11303 DNA-binding transcrip 22.7 2.6E+02 0.0056 19.8 5.0 36 57-92 223-258 (328)
333 cd06313 PBP1_ABC_sugar_binding 22.6 2.4E+02 0.0053 19.5 4.8 36 57-92 168-203 (272)
334 COG2111 MnhB Multisubunit Na+/ 22.5 57 0.0012 21.8 1.4 17 76-92 48-64 (162)
335 PLN02752 [acyl-carrier protein 22.4 1.3E+02 0.0029 22.2 3.5 17 74-90 126-142 (343)
336 PF01122 Cobalamin_bind: Eukar 22.2 62 0.0013 24.5 1.7 44 51-94 208-253 (326)
337 KOG0970|consensus 22.1 1.6E+02 0.0034 26.6 4.1 44 57-101 608-652 (1429)
338 cd01714 ETF_beta The electron 21.7 1.9E+02 0.0041 19.9 4.0 40 56-95 93-136 (202)
339 cd06323 PBP1_ribose_binding Pe 21.7 2.6E+02 0.0056 18.9 4.7 34 57-90 166-199 (268)
340 PTZ00242 protein tyrosine phos 21.6 2.6E+02 0.0056 18.6 4.6 43 52-94 76-124 (166)
341 cd01399 GlcN6P_deaminase GlcN6 21.5 1.1E+02 0.0023 21.0 2.7 35 57-93 5-39 (232)
342 cd06283 PBP1_RegR_EndR_KdgR_li 21.5 2.7E+02 0.0058 18.8 5.1 36 57-92 163-198 (267)
343 cd06322 PBP1_ABC_sugar_binding 21.4 2.6E+02 0.0056 19.0 4.7 36 57-92 164-199 (267)
344 cd06281 PBP1_LacI_like_5 Ligan 21.3 2.8E+02 0.0061 18.9 5.2 32 56-87 160-191 (269)
345 cd06295 PBP1_CelR Ligand bindi 21.2 2.8E+02 0.0061 18.9 5.1 35 57-91 171-205 (275)
346 PRK09526 lacI lac repressor; R 21.1 3.1E+02 0.0067 19.6 5.2 35 58-92 226-260 (342)
347 cd07223 Pat_PNPLA5-mammals Pat 21.0 1.6E+02 0.0034 23.1 3.7 20 74-93 43-62 (405)
348 cd00553 NAD_synthase NAD+ synt 20.9 3E+02 0.0065 19.3 5.0 30 54-83 5-34 (248)
349 PF07082 DUF1350: Protein of u 20.9 72 0.0016 23.3 1.8 18 77-94 95-112 (250)
350 PF11695 DUF3291: Domain of un 20.7 1.3E+02 0.0029 19.8 2.9 28 53-81 111-138 (140)
351 cd06300 PBP1_ABC_sugar_binding 20.6 2.1E+02 0.0045 19.5 4.1 35 57-92 170-204 (272)
352 PRK11761 cysM cysteine synthas 20.5 2.6E+02 0.0056 20.4 4.7 35 57-94 237-271 (296)
353 cd01454 vWA_norD_type norD typ 20.3 2.2E+02 0.0048 18.4 4.0 31 53-83 19-49 (174)
354 cd06303 PBP1_LuxPQ_Quorum_Sens 20.3 3.1E+02 0.0067 19.0 5.0 36 57-92 175-210 (280)
355 cd03146 GAT1_Peptidase_E Type 20.3 1.2E+02 0.0026 20.9 2.8 14 75-88 116-129 (212)
356 TIGR03534 RF_mod_PrmC protein- 20.3 3E+02 0.0064 18.8 4.8 36 54-89 194-229 (251)
357 cd05312 NAD_bind_1_malic_enz N 20.2 56 0.0012 24.1 1.1 29 62-91 96-125 (279)
No 1
>KOG2551|consensus
Probab=99.90 E-value=4.2e-24 Score=149.68 Aligned_cols=97 Identities=38% Similarity=0.649 Sum_probs=75.5
Q ss_pred CHhhccCCcEEEeccCCeeccCCCCCCCcCC-------CCCCCCccccCCCCCCCChhhHhhHHHHHHHHHHHHHhhCCc
Q psy2496 1 MRKRLKSLAELTYIDAPYVIENPNISSLEDL-------APTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRSKGPF 73 (102)
Q Consensus 1 lr~~L~~~~~f~f~daP~~~~~~~~~~~~~~-------~~~~~~~~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~~gp~ 73 (102)
+||.|++.++|+|||||++++....+...+. ..+..-|.||..++.. ...+.+.++++++|.++|.++|||
T Consensus 28 ~rK~l~k~~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~--~~~~~~~eesl~yl~~~i~enGPF 105 (230)
T KOG2551|consen 28 LRKLLKKLAELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEAS--FTEYFGFEESLEYLEDYIKENGPF 105 (230)
T ss_pred HHHHHHhhheEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccccc--cccccChHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999887665543220 0111124488776521 245889999999999999999999
Q ss_pred eEEEeechHHHHHHHHHhhhccCccC
Q psy2496 74 DGILGFSQGAELLGLICCLKSKNCKY 99 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~~~~~~~ 99 (102)
|||+||||||+|++.|+.+.+.+..+
T Consensus 106 DGllGFSQGA~laa~l~~~~~~~~~~ 131 (230)
T KOG2551|consen 106 DGLLGFSQGAALAALLAGLGQKGLPY 131 (230)
T ss_pred ccccccchhHHHHHHhhcccccCCcc
Confidence 99999999999999999977766544
No 2
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=99.90 E-value=1.3e-24 Score=151.78 Aligned_cols=94 Identities=34% Similarity=0.617 Sum_probs=59.2
Q ss_pred CHhhccC-CcEEEeccCCeeccCCCCCCCc-C-----CCCCCCCccccCCCCCCCChhhHhhHHHHHHHHHHHHHhhCCc
Q psy2496 1 MRKRLKS-LAELTYIDAPYVIENPNISSLE-D-----LAPTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRSKGPF 73 (102)
Q Consensus 1 lr~~L~~-~~~f~f~daP~~~~~~~~~~~~-~-----~~~~~~~~~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~~gp~ 73 (102)
||+.|++ .++|+|+|||+++.++++.... . .......|+||..... ...+.++++++++|.++++++|||
T Consensus 27 l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~~~~~~~sl~~l~~~i~~~GPf 103 (212)
T PF03959_consen 27 LRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD---DHEYEGLDESLDYLRDYIEENGPF 103 (212)
T ss_dssp HHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S----SGGG---HHHHHHHHHHHHHH---
T ss_pred HHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC---cccccCHHHHHHHHHHHHHhcCCe
Confidence 5889998 8999999999999554432210 0 1123345669998653 246899999999999999999999
Q ss_pred eEEEeechHHHHHHHHHhhhccCc
Q psy2496 74 DGILGFSQGAELLGLICCLKSKNC 97 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~~~~~ 97 (102)
|||+||||||+||+.|++++++.+
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~ 127 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGR 127 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHS
T ss_pred EEEEeecHHHHHHHHHHHHHHhhc
Confidence 999999999999999999887654
No 3
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.22 E-value=3.3e-11 Score=83.82 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCcEEEeccCCeeccCCCCCCCcCCCCCCCCccccCCCCCCCC-hhhHhhHHHHHHHHHHHHHhh---C---CceEEEee
Q psy2496 7 SLAELTYIDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYS-ENIVTGFNESFPFIEEVIRSK---G---PFDGILGF 79 (102)
Q Consensus 7 ~~~~f~f~daP~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~s~~~l~~~i~~~---g---p~dgilGF 79 (102)
+...+++++||....... .+...++||+....+.. ..+.++++++.+.|.++|++. + .-+.++||
T Consensus 41 ~~~~~i~p~ap~~~~~~~--------~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~~li~~~~~~~i~~~ri~l~GF 112 (216)
T PF02230_consen 41 PNTRFISPRAPSRPVTVP--------GGYRMPAWFDIYDFDPEGPEDEAGIEESAERLDELIDEEVAYGIDPSRIFLGGF 112 (216)
T ss_dssp TTEEEEEE---EEE-GGG--------TT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHHHHHHHHHHTT--GGGEEEEEE
T ss_pred CceEEEeccCCCCCcccc--------cccCCCceeeccCCCcchhhhHHHHHHHHHHHHHHHHHHHHcCCChhheehhhh
Confidence 458999999999643221 11233489987642211 135789999999999998753 2 25679999
Q ss_pred chHHHHHHHHHhhhcc
Q psy2496 80 SQGAELLGLICCLKSK 95 (102)
Q Consensus 80 SQGa~~a~~l~~~~~~ 95 (102)
||||+||+.+++....
T Consensus 113 SQGa~~al~~~l~~p~ 128 (216)
T PF02230_consen 113 SQGAAMALYLALRYPE 128 (216)
T ss_dssp THHHHHHHHHHHCTSS
T ss_pred hhHHHHHHHHHHHcCc
Confidence 9999999999987643
No 4
>COG0400 Predicted esterase [General function prediction only]
Probab=98.66 E-value=1.7e-07 Score=65.79 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=45.1
Q ss_pred cCCcEEEeccCCeeccCCCCCCCcCCCCCCCCccccCCCCCCCChhhHhhHHHHHHHHHHHHH----hhC---CceEEEe
Q psy2496 6 KSLAELTYIDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIR----SKG---PFDGILG 78 (102)
Q Consensus 6 ~~~~~f~f~daP~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~----~~g---p~dgilG 78 (102)
-+++.+++++||..... ....++|++... ++ .+++....+.+.++++ +.| .-..++|
T Consensus 42 ~P~~~~is~rG~v~~~g-----------~~~~f~~~~~~~--~d---~edl~~~~~~~~~~l~~~~~~~gi~~~~ii~~G 105 (207)
T COG0400 42 LPNATLVSPRGPVAENG-----------GPRFFRRYDEGS--FD---QEDLDLETEKLAEFLEELAEEYGIDSSRIILIG 105 (207)
T ss_pred CCCCeEEcCCCCccccC-----------cccceeecCCCc--cc---hhhHHHHHHHHHHHHHHHHHHhCCChhheEEEe
Confidence 34467777777765221 123444665543 33 4555555555555554 344 2566889
Q ss_pred echHHHHHHHHHhhhc
Q psy2496 79 FSQGAELLGLICCLKS 94 (102)
Q Consensus 79 FSQGa~~a~~l~~~~~ 94 (102)
|||||+|++.+++.++
T Consensus 106 fSqGA~ial~~~l~~~ 121 (207)
T COG0400 106 FSQGANIALSLGLTLP 121 (207)
T ss_pred cChHHHHHHHHHHhCc
Confidence 9999999999999876
No 5
>PRK11460 putative hydrolase; Provisional
Probab=98.64 E-value=2.1e-07 Score=65.65 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=46.3
Q ss_pred CcEEEeccCCeeccCCCCCCCcCCCCCCCCccccCCCCCCCChhhHhhHHHHHHHHHHHHHh----hC---CceEEEeec
Q psy2496 8 LAELTYIDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRS----KG---PFDGILGFS 80 (102)
Q Consensus 8 ~~~f~f~daP~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~----~g---p~dgilGFS 80 (102)
.+.+++++||.+... ...++||+....+.. ....++.++++.+.+.++. .+ ..++|+|||
T Consensus 45 ~~~~i~~~g~~~~~~------------~~g~~W~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS 111 (232)
T PRK11460 45 DALVVSVGGPEPSGN------------GAGRQWFSVQGITED-NRQARVAAIMPTFIETVRYWQQQSGVGASATALIGFS 111 (232)
T ss_pred CCEEECCCCCCCcCC------------CCCcccccCCCCCcc-chHHHHHHHHHHHHHHHHHHHHhcCCChhhEEEEEEC
Confidence 357888888864321 135679976432111 2344556666655555432 22 357899999
Q ss_pred hHHHHHHHHHhhhc
Q psy2496 81 QGAELLGLICCLKS 94 (102)
Q Consensus 81 QGa~~a~~l~~~~~ 94 (102)
|||+||+.+++.+.
T Consensus 112 ~Gg~~al~~a~~~~ 125 (232)
T PRK11460 112 QGAIMALEAVKAEP 125 (232)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887643
No 6
>KOG2112|consensus
Probab=98.41 E-value=1.1e-06 Score=61.53 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=56.0
Q ss_pred CcEEEeccCCeeccCCCCCCCcCCCCCCCCccccCCCCCCCC-hhhHhhHHHHHHHHHHHHHhh---C-C--ceEEEeec
Q psy2496 8 LAELTYIDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYS-ENIVTGFNESFPFIEEVIRSK---G-P--FDGILGFS 80 (102)
Q Consensus 8 ~~~f~f~daP~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~s~~~l~~~i~~~---g-p--~dgilGFS 80 (102)
.+.++||+||..-... ..+....+||+...-+.+ .++.+++..+.+.+.+.++++ | | -++|.|||
T Consensus 30 NiKwIcP~aP~rpvt~--------~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs 101 (206)
T KOG2112|consen 30 NIKWICPTAPSRPVTL--------NGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLIDNEPANGIPSNRIGIGGFS 101 (206)
T ss_pred CeeEEcCCCCCCcccc--------cCCCcccceecceeeCcccchhhhHHHHHHHHHHHHHHHHHHcCCCccceeEcccC
Confidence 4899999999862211 123456669998651111 146889999999999999875 3 2 35688999
Q ss_pred hHHHHHHHHHhhh
Q psy2496 81 QGAELLGLICCLK 93 (102)
Q Consensus 81 QGa~~a~~l~~~~ 93 (102)
|||++|+..++..
T Consensus 102 ~G~a~aL~~~~~~ 114 (206)
T KOG2112|consen 102 QGGALALYSALTY 114 (206)
T ss_pred chHHHHHHHHhcc
Confidence 9999999988865
No 7
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.62 E-value=0.00031 Score=48.47 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=26.1
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
...+.+.++++.+...-...-+.|+||||||.|++.+++.+.
T Consensus 76 ~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p 117 (212)
T TIGR01840 76 VESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYP 117 (212)
T ss_pred HHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCc
Confidence 344444444444321111124779999999999999988753
No 8
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.34 E-value=0.00035 Score=49.17 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=25.6
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.++.+|.++-.+..++..| ..|+|+|||+.|...|+...
T Consensus 77 y~DV~~AF~~yL~~~n~GRP-fILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 77 YSDVRAAFDYYLANYNNGRP-FILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred HHHHHHHHHHHHHhcCCCCC-EEEEEeChHHHHHHHHHHHH
Confidence 34455444444443322236 45999999999999997754
No 9
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=97.17 E-value=0.0011 Score=47.06 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHh---hCCceEEEeechHHHHHHHHHhhhcc
Q psy2496 54 TGFNESFPFIEEVIRS---KGPFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~---~gp~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
+++.+..+.|.+.|.+ .+.-+.|+|+||||.++...+.++..
T Consensus 27 ~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~ 71 (225)
T PF08237_consen 27 ESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAA 71 (225)
T ss_pred hHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHh
Confidence 5666667777777776 44457899999999999988877654
No 10
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=97.15 E-value=0.00048 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.273 Sum_probs=18.4
Q ss_pred CceEEEeechHHHHHHHHHhh
Q psy2496 72 PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~ 92 (102)
..++|+|+|.||.|++.++..
T Consensus 64 ~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 64 DRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp EEEEEEEETHHHHHHHHHHHH
T ss_pred eeEEEEcccccccccchhhcc
Confidence 367899999999999998883
No 11
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=96.86 E-value=0.0037 Score=42.04 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=30.0
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhcc
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
...+.+.++.+.+.+... -..++|+|+||.+++.++.+...
T Consensus 27 ~~~~~~~~~~~~~~l~~~--~~~~vG~S~Gg~~~~~~a~~~p~ 67 (230)
T PF00561_consen 27 TDDLAADLEALREALGIK--KINLVGHSMGGMLALEYAAQYPE 67 (230)
T ss_dssp HHHHHHHHHHHHHHHTTS--SEEEEEETHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhCCC--CeEEEEECCChHHHHHHHHHCch
Confidence 455665666666655433 38899999999999999987654
No 12
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=96.83 E-value=0.0047 Score=39.52 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhCC-ceEEEeechHHHHHHHHHhhhcc
Q psy2496 58 ESFPFIEEVIRSKGP-FDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp-~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
+..+.|.+.+++..+ -..|.|+|.||++|..+++....
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~~ 87 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASLAAADLAS 87 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhhh
Confidence 344556665555443 35678999999999999887543
No 13
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=96.72 E-value=0.0052 Score=42.05 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=28.6
Q ss_pred HhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 53 VTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
..+..+..+.|.++..+.. ....|+||||||.++..++..
T Consensus 61 ~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~ 101 (179)
T PF01083_consen 61 AAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSG 101 (179)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHh
Confidence 4555555566666555542 367799999999999988766
No 14
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.71 E-value=0.0057 Score=40.10 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=19.4
Q ss_pred ceEEEeechHHHHHHHHHhhhcc
Q psy2496 73 FDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
-..|.|||+||+||..++++...
T Consensus 29 ~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 29 KIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHh
Confidence 45688999999999999887754
No 15
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=96.70 E-value=0.0079 Score=42.65 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.0
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+-+.|||-||+|+..|++..
T Consensus 98 RVyv~G~S~Gg~ma~~la~~~ 118 (220)
T PF10503_consen 98 RVYVTGLSNGGMMANVLACAY 118 (220)
T ss_pred ceeeEEECHHHHHHHHHHHhC
Confidence 567999999999999888753
No 16
>PRK10566 esterase; Provisional
Probab=96.56 E-value=0.0034 Score=43.69 Aligned_cols=22 Identities=18% Similarity=-0.093 Sum_probs=18.8
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.++|+|+|+||.+++.++....
T Consensus 108 ~i~v~G~S~Gg~~al~~~~~~~ 129 (249)
T PRK10566 108 RLAVGGASMGGMTALGIMARHP 129 (249)
T ss_pred ceeEEeecccHHHHHHHHHhCC
Confidence 5789999999999998877543
No 17
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=96.52 E-value=0.011 Score=38.99 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=32.1
Q ss_pred HhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
...+++..+.+.++++..+ +-+.|+|+|.||.++..++....
T Consensus 46 ~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p 88 (228)
T PF12697_consen 46 PYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYP 88 (228)
T ss_dssp GGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSG
T ss_pred Ccchhhhhhhhhhcccccccccccccccccccccccccccccc
Confidence 3455666777778887765 45779999999999999987643
No 18
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.37 E-value=0.01 Score=40.32 Aligned_cols=41 Identities=5% Similarity=-0.077 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..+++..+.+.++++..+ .-..++|+|+||.+|..++....
T Consensus 61 ~~~~~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~ 102 (257)
T TIGR03611 61 YSIAHMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYP 102 (257)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHHCh
Confidence 345666677777776654 34679999999999999887643
No 19
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=96.11 E-value=0.019 Score=39.56 Aligned_cols=40 Identities=23% Similarity=0.061 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
++++..+.+.+++++.+ ....|+|+|+||.++..++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p 118 (288)
T TIGR01250 78 TIDYFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYG 118 (288)
T ss_pred cHHHHHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCc
Confidence 45556666666666543 34789999999999999987653
No 20
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=95.98 E-value=0.02 Score=38.37 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+++..+.+.++++..+ ..+.|+|+|+||.++..++...
T Consensus 61 ~~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~ 100 (251)
T TIGR02427 61 SIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARR 100 (251)
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHC
Confidence 44455556666666543 3467999999999999888764
No 21
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=95.96 E-value=0.02 Score=38.82 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=34.3
Q ss_pred hhHhhHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhhhccC
Q psy2496 51 NIVTGFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
...+++.+++++|.+..++.+ .-+.|+|+|-||.||+.+++.....
T Consensus 47 ~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~ 95 (211)
T PF07859_consen 47 AALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDR 95 (211)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHT
T ss_pred ccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhh
Confidence 346777778888877765433 3577999999999999999865443
No 22
>PRK10673 acyl-CoA esterase; Provisional
Probab=95.76 E-value=0.028 Score=38.81 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
++++-.+.+.++++..+ .-..|+|+|.||.+|..++...+
T Consensus 63 ~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~ 103 (255)
T PRK10673 63 NYPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAP 103 (255)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHhCH
Confidence 34444556666666543 23679999999999999987654
No 23
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=95.76 E-value=0.024 Score=39.35 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..++...+.+.++++..+ .-..|+|+|+||.+++.++....
T Consensus 76 ~~~~~~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p 117 (278)
T TIGR03056 76 FTLPSMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGP 117 (278)
T ss_pred CCHHHHHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCC
Confidence 355666667777776543 23579999999999999887654
No 24
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=95.73 E-value=0.037 Score=38.01 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++..+.+.+++++.+ .-..++|+|.||.+|..++....
T Consensus 48 ~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~ 88 (242)
T PRK11126 48 GFADVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGL 88 (242)
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCC
Confidence 56667778888887765 34669999999999999998763
No 25
>PRK13604 luxD acyl transferase; Provisional
Probab=95.69 E-value=0.021 Score=42.44 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
..++..+++++++. ...-++|+|+|+||++|...+.
T Consensus 92 ~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 92 KNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVIN 127 (307)
T ss_pred HHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhc
Confidence 34555566666552 2345899999999999865554
No 26
>PRK11071 esterase YqiA; Provisional
Probab=95.67 E-value=0.035 Score=37.99 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 57 NESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 57 ~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
++..+.+.+++++.+ .-..++|+|.||.+|+.++....
T Consensus 45 ~~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~ 83 (190)
T PRK11071 45 ADAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCFM 83 (190)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHcC
Confidence 345667777777654 35789999999999999988754
No 27
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=95.61 E-value=0.033 Score=41.04 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++-.+.+.+++++.+ +...|+|+|.||.+|..++..+.
T Consensus 119 ~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P 160 (343)
T PRK08775 119 DTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHP 160 (343)
T ss_pred CHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHCh
Confidence 34555677788887765 34579999999999999998753
No 28
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=95.57 E-value=0.028 Score=43.27 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=35.0
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.-++++-+++|.++|+..|+-+.|+|.||||.+++.++.++.
T Consensus 149 ~f~ldDYi~~l~~~i~~~G~~v~l~GvCqgG~~~laa~Al~a 190 (406)
T TIGR01849 149 KFDLEDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMA 190 (406)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEEEchhhHHHHHHHHHHH
Confidence 456788888999999888877889999999999988777663
No 29
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=95.55 E-value=0.041 Score=34.67 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.1
Q ss_pred CceEEEeechHHHHHHHHHhhh
Q psy2496 72 PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.-.+++|||+||.++..++...
T Consensus 61 ~~i~l~G~S~Gg~~a~~~~~~~ 82 (145)
T PF12695_consen 61 DRIILIGHSMGGAIAANLAARN 82 (145)
T ss_dssp CEEEEEEETHHHHHHHHHHHHS
T ss_pred CcEEEEEEccCcHHHHHHhhhc
Confidence 4678999999999999998865
No 30
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=95.53 E-value=0.043 Score=36.60 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=27.9
Q ss_pred hhHHHHHHH-HHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPF-IEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~-l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.++++.++. +..+++..+ .-..|+|+|.||.+|..++.+..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~~ 92 (251)
T TIGR03695 50 YDFEEAAQDILATLLDQLGIEPFFLVGYSMGGRIALYYALQYP 92 (251)
T ss_pred hhHHHHHHHHHHHHHHHcCCCeEEEEEeccHHHHHHHHHHhCc
Confidence 445555555 455554432 24668999999999999988653
No 31
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=95.46 E-value=0.032 Score=38.41 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=22.5
Q ss_pred HHHHHhhC----CceEEEeechHHHHHHHHHhhh
Q psy2496 64 EEVIRSKG----PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 64 ~~~i~~~g----p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++++++. ..+|++|||.||.+|..++...
T Consensus 86 ~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 86 VDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 44444443 3688999999999999887665
No 32
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=95.42 E-value=0.043 Score=39.14 Aligned_cols=41 Identities=7% Similarity=-0.178 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..+++-.+.+.++|++.+ .-+.++|+|.||.+|+.+++++.
T Consensus 83 ~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p 124 (294)
T PLN02824 83 YTFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAP 124 (294)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCh
Confidence 456666778888887653 34569999999999999988754
No 33
>PRK10162 acetyl esterase; Provisional
Probab=95.42 E-value=0.04 Score=40.54 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=30.4
Q ss_pred HhhHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+++.+++++|.+..++.| .-+.|+|+|.||.||+.++++.
T Consensus 132 ~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~ 175 (318)
T PRK10162 132 IEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWL 175 (318)
T ss_pred HHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHH
Confidence 3455566677776665543 3578999999999999998764
No 34
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=95.30 E-value=0.029 Score=43.21 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=33.5
Q ss_pred HhhHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~~ 93 (102)
..+...++++|++.|.+-| .-+.|+|+|.||.++..+++..
T Consensus 154 ~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~ 197 (493)
T cd00312 154 LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSP 197 (493)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCc
Confidence 4577788999999998753 3678999999999998887764
No 35
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.27 E-value=0.023 Score=40.46 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.1
Q ss_pred CceEEEeechHHHHHHHHHhhh
Q psy2496 72 PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~ 93 (102)
..+|++|||.||.++..++..-
T Consensus 112 ~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 112 KRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred ceEEEEEEcccHHHHHHhhccc
Confidence 4699999999999999888764
No 36
>PLN02965 Probable pheophorbidase
Probab=95.23 E-value=0.044 Score=38.41 Aligned_cols=39 Identities=10% Similarity=-0.020 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhh
Q psy2496 55 GFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+++..+.|.+++++.+ .-..++|+|.||.++..++..+
T Consensus 53 ~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~ 93 (255)
T PLN02965 53 SSDQYNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALCKF 93 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHhC
Confidence 46666677888888754 2467999999999999999865
No 37
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=95.18 E-value=0.061 Score=38.13 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHh----hCCceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRS----KGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~----~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++...|+++|+. .|-.+-|+|+|||+.|+-.++.-.
T Consensus 57 ~~~~~l~~fI~~Vl~~TGakVDIVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 57 ESAKQLRAFIDAVLAYTGAKVDIVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEEEEETCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhhCCEEEEEEcCCcCHHHHHHHHHc
Confidence 334556666643 455778999999999998877643
No 38
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=95.11 E-value=0.026 Score=39.40 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+-+++++++|.+.-.-.+..+||+|.|-||-+|+.++....
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~ 44 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP 44 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC
Confidence 45666777666654434567999999999999999998765
No 39
>PLN02606 palmitoyl-protein thioesterase
Probab=95.08 E-value=0.034 Score=41.33 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++++..++.|.+ +.+...=..++||||||-++=.++-+-
T Consensus 77 ~~Qv~~vce~l~~-~~~L~~G~naIGfSQGglflRa~ierc 116 (306)
T PLN02606 77 RQQASIACEKIKQ-MKELSEGYNIVAESQGNLVARGLIEFC 116 (306)
T ss_pred HHHHHHHHHHHhc-chhhcCceEEEEEcchhHHHHHHHHHC
Confidence 4677777777777 544322245899999999887766543
No 40
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=95.02 E-value=0.042 Score=41.58 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhhhccC
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
|...++++| .-.||.|+|.||.||+..+....++
T Consensus 165 Ll~Wl~~~G~~~~g~~G~SmGG~~A~laa~~~p~p 199 (348)
T PF09752_consen 165 LLHWLEREGYGPLGLTGISMGGHMAALAASNWPRP 199 (348)
T ss_pred HHHHHHhcCCCceEEEEechhHhhHHhhhhcCCCc
Confidence 444555555 3689999999999999988876654
No 41
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=94.96 E-value=0.079 Score=37.60 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
...-..|++++.+.+++.+.-.-|.|+|-||.+|...++..
T Consensus 65 ~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~ 105 (224)
T PF11187_consen 65 TPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANC 105 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHc
Confidence 34557889999999987654478999999999999888874
No 42
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.89 E-value=0.047 Score=39.63 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHHHHHHh---hCCceEEEeechHHHHHHHHHhhhccC
Q psy2496 53 VTGFNESFPFIEEVIRS---KGPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~---~gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
...+++..++..+.|.+ +||++ ++|+|-||.+|..++.+++..
T Consensus 44 ~~~l~~~a~~yv~~Ir~~QP~GPy~-L~G~S~GG~vA~evA~qL~~~ 89 (257)
T COG3319 44 FASLDDMAAAYVAAIRRVQPEGPYV-LLGWSLGGAVAFEVAAQLEAQ 89 (257)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEE-EEeeccccHHHHHHHHHHHhC
Confidence 45566555554444443 57755 999999999999999976543
No 43
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=94.87 E-value=0.074 Score=37.58 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=30.0
Q ss_pred HhhHHHHHHHHHHHHHhh---CCceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSK---GPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~---gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+-+.+++++|.+..... ..-+.|+|+|+||.+|-.++.+..
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~ 107 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPN 107 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccc
Confidence 455666777777766322 346779999999999988877654
No 44
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=94.87 E-value=0.085 Score=36.75 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=18.8
Q ss_pred ceEEEeechHHHHHHHHHhhhcc
Q psy2496 73 FDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
-..|.|+|.||+||..+++....
T Consensus 129 ~i~vtGHSLGGaiA~l~a~~l~~ 151 (229)
T cd00519 129 KIIVTGHSLGGALASLLALDLRL 151 (229)
T ss_pred eEEEEccCHHHHHHHHHHHHHHh
Confidence 35588999999999998887553
No 45
>PLN02633 palmitoyl protein thioesterase family protein
Probab=94.85 E-value=0.046 Score=40.82 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=27.7
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++++..++.|.+ +.+...=..++||||||-++=.++-.-
T Consensus 76 ~~Qve~vce~l~~-~~~l~~G~naIGfSQGGlflRa~ierc 115 (314)
T PLN02633 76 TQQAEIACEKVKQ-MKELSQGYNIVGRSQGNLVARGLIEFC 115 (314)
T ss_pred HHHHHHHHHHHhh-chhhhCcEEEEEEccchHHHHHHHHHC
Confidence 5677777777777 544322145999999999887766543
No 46
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=94.79 E-value=0.11 Score=37.83 Aligned_cols=31 Identities=19% Similarity=0.065 Sum_probs=22.5
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+++++.+ .-+.|+|+|.||.+++.++...
T Consensus 89 ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~ 120 (266)
T TIGR03101 89 AYRWLIEQGHPPVTLWGLRLGALLALDAANPL 120 (266)
T ss_pred HHHHHHhcCCCCEEEEEECHHHHHHHHHHHhC
Confidence 334454443 3478999999999999888665
No 47
>PRK06489 hypothetical protein; Provisional
Probab=94.76 E-value=0.078 Score=39.39 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHH-HhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVI-RSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i-~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++..+.+.+.+ +..+ ++..|+|+|.||.+|+.+++++.
T Consensus 134 ~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P 176 (360)
T PRK06489 134 DYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYP 176 (360)
T ss_pred cHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCc
Confidence 4555566666655 3333 44458999999999999998754
No 48
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=94.76 E-value=0.024 Score=42.16 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.4
Q ss_pred CceEEEeechHHHHHHHHHhhhcc
Q psy2496 72 PFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
..++|.|-||||++++.++.+..+
T Consensus 175 ~rI~v~G~SqGG~lal~~aaLd~r 198 (320)
T PF05448_consen 175 KRIGVTGGSQGGGLALAAAALDPR 198 (320)
T ss_dssp EEEEEEEETHHHHHHHHHHHHSST
T ss_pred ceEEEEeecCchHHHHHHHHhCcc
Confidence 356799999999999999988654
No 49
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=94.73 E-value=0.083 Score=37.91 Aligned_cols=40 Identities=18% Similarity=0.030 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhh
Q psy2496 54 TGFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++++..+.|.++|++.+ .-+.++|+|.||.++..++...
T Consensus 67 ~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~ 108 (273)
T PLN02211 67 TTFDEYNKPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRF 108 (273)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhC
Confidence 466666778888887642 3466999999999999888654
No 50
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=94.72 E-value=0.088 Score=40.14 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++-.+.+.+++++.| ++..|+|+|.||++|..++.++.
T Consensus 142 t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P 183 (389)
T PRK06765 142 TILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYP 183 (389)
T ss_pred cHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHCh
Confidence 56666677777776654 45669999999999999998764
No 51
>PRK03592 haloalkane dehalogenase; Provisional
Probab=94.71 E-value=0.095 Score=37.38 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++..+.+.++++..+ .-..|+|+|.||.+|..++..+.
T Consensus 75 ~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 115 (295)
T PRK03592 75 TFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHP 115 (295)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhCh
Confidence 45666677777777654 45779999999999999998764
No 52
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=94.61 E-value=0.098 Score=37.53 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=24.4
Q ss_pred HHHHHHHHHhh----CCceEEEeechHHHHHHHHHhhh
Q psy2496 60 FPFIEEVIRSK----GPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 60 ~~~l~~~i~~~----gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+.|...+++. ..-.+|+|+|+||.+|+.+++..
T Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~ 159 (275)
T TIGR02821 122 VQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKN 159 (275)
T ss_pred HHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhC
Confidence 34455555543 12468999999999999998875
No 53
>PRK00870 haloalkane dehalogenase; Provisional
Probab=94.59 E-value=0.1 Score=37.50 Aligned_cols=39 Identities=3% Similarity=-0.046 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+++..+.|.+++++.+ +-..|+|+|.||.+|..++...
T Consensus 97 ~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~ 136 (302)
T PRK00870 97 TYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEH 136 (302)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhC
Confidence 46667778888887654 4567999999999999999865
No 54
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=94.55 E-value=0.12 Score=35.34 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHHHHHHh---hCCceEEEeechHHHHHHHHHhhhccC
Q psy2496 53 VTGFNESFPFIEEVIRS---KGPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~---~gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
..++++-.+...+.|.. +|| ..++|+|-||.+|..++..++..
T Consensus 45 ~~si~~la~~y~~~I~~~~~~gp-~~L~G~S~Gg~lA~E~A~~Le~~ 90 (229)
T PF00975_consen 45 PDSIEELASRYAEAIRARQPEGP-YVLAGWSFGGILAFEMARQLEEA 90 (229)
T ss_dssp ESSHHHHHHHHHHHHHHHTSSSS-EEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhhhCCCCC-eeehccCccHHHHHHHHHHHHHh
Confidence 35566655555555544 345 55999999999999999877543
No 55
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=94.51 E-value=0.095 Score=38.34 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHhhCC-ceEEEeechHHHHHHHHHhhh
Q psy2496 54 TGFNESFPFIEEVIRSKGP-FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp-~dgilGFSQGa~~a~~l~~~~ 93 (102)
..+++..+.+.+++++.++ -..|+|+|+||.+|..++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~ 218 (371)
T PRK14875 178 GSLDELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARA 218 (371)
T ss_pred CCHHHHHHHHHHHHHhcCCccEEEEeechHHHHHHHHHHhC
Confidence 4566667777777877663 467999999999999888764
No 56
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=94.50 E-value=0.12 Score=36.59 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++.-.+.+.++++..+ .-..++|+|.||.+|+.++...
T Consensus 73 ~~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~ 112 (276)
T TIGR02240 73 RFPGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDY 112 (276)
T ss_pred cHHHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHC
Confidence 45555667777777654 2355999999999999999865
No 57
>PLN02442 S-formylglutathione hydrolase
Probab=94.46 E-value=0.11 Score=37.64 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=19.2
Q ss_pred CceEEEeechHHHHHHHHHhhhc
Q psy2496 72 PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.-.+|+|+|+||.+|+.+++.+.
T Consensus 143 ~~~~i~G~S~GG~~a~~~a~~~p 165 (283)
T PLN02442 143 SRASIFGHSMGGHGALTIYLKNP 165 (283)
T ss_pred CceEEEEEChhHHHHHHHHHhCc
Confidence 34689999999999999888653
No 58
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=94.37 E-value=0.076 Score=37.25 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 60 FPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 60 ~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+.+.++++..+ .-..++|+|.||.++..++.++.
T Consensus 88 ~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p 123 (282)
T TIGR03343 88 ARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYP 123 (282)
T ss_pred HHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhCh
Confidence 355666776654 34679999999999999988653
No 59
>PLN02872 triacylglycerol lipase
Probab=94.30 E-value=0.081 Score=40.47 Aligned_cols=20 Identities=25% Similarity=0.052 Sum_probs=16.3
Q ss_pred CCceEEEeechHHHHHHHHH
Q psy2496 71 GPFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 71 gp~dgilGFSQGa~~a~~l~ 90 (102)
+.-..++|+||||+++..++
T Consensus 159 ~~~v~~VGhS~Gg~~~~~~~ 178 (395)
T PLN02872 159 NSKIFIVGHSQGTIMSLAAL 178 (395)
T ss_pred CCceEEEEECHHHHHHHHHh
Confidence 45688999999999998554
No 60
>PRK10749 lysophospholipase L2; Provisional
Probab=94.23 E-value=0.15 Score=37.40 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHhh----C-CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSK----G-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~----g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
++++.++.+.++++.. + .-..++|+|.||.+|+.++....
T Consensus 109 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p 153 (330)
T PRK10749 109 RFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHP 153 (330)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCC
Confidence 4555556666665432 1 23568999999999998887643
No 61
>PLN02578 hydrolase
Probab=94.13 E-value=0.13 Score=38.16 Aligned_cols=39 Identities=8% Similarity=-0.172 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 56 FNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+.-.+.+.+++++.+ .-..|+|+|+||.+|..++....
T Consensus 135 ~~~~a~~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p 174 (354)
T PLN02578 135 AMVWRDQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYP 174 (354)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHHHhCh
Confidence 3333456666666543 23569999999999999998653
No 62
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=94.11 E-value=0.15 Score=37.64 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHhhC-C-ceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG-P-FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p-~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++-.+.+.+++++.| + ...|+|+|.||++|..++.++.
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p 149 (351)
T TIGR01392 108 TIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYP 149 (351)
T ss_pred cHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHCh
Confidence 45556667777776655 2 2679999999999999988753
No 63
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=93.96 E-value=0.1 Score=37.79 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.9
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-+.|+|||.||.+|..++....
T Consensus 113 ~i~lIGhSlGa~vAg~~a~~~~ 134 (275)
T cd00707 113 NVHLIGHSLGAHVAGFAGKRLN 134 (275)
T ss_pred HEEEEEecHHHHHHHHHHHHhc
Confidence 4679999999999999987654
No 64
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=93.95 E-value=0.14 Score=37.24 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=34.6
Q ss_pred hHhhHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhhhccC
Q psy2496 52 IVTGFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
..++..+++.++.+...+.| ..+.|+|.|-||.+|+.+++....+
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~ 176 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDR 176 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhc
Confidence 34566677788887776543 4688999999999999999876643
No 65
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=93.92 E-value=0.17 Score=38.02 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++-.+.+.++++..+ ++..|+|+|.||.+|..++.++.
T Consensus 128 ~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p 169 (379)
T PRK00175 128 TIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYP 169 (379)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhCh
Confidence 46666677778887654 33479999999999999988753
No 66
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=93.80 E-value=0.11 Score=38.41 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=18.8
Q ss_pred CceEEEeechHHHHHHHHHhhhc
Q psy2496 72 PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.-+.++|+|+||.+++.++..+.
T Consensus 136 ~~i~lvGhS~GG~i~~~~~~~~~ 158 (350)
T TIGR01836 136 DQISLLGICQGGTFSLCYAALYP 158 (350)
T ss_pred CcccEEEECHHHHHHHHHHHhCc
Confidence 34779999999999998877653
No 67
>PLN02847 triacylglycerol lipase
Probab=93.77 E-value=0.19 Score=40.67 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.3
Q ss_pred eEEEeechHHHHHHHHHhhhccCccCc
Q psy2496 74 DGILGFSQGAELLGLICCLKSKNCKYL 100 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~~~~~~~~ 100 (102)
..|.|+|-||++|+.++++......|.
T Consensus 253 LVITGHSLGGGVAALLAilLRe~~~fs 279 (633)
T PLN02847 253 IKIVGHSLGGGTAALLTYILREQKEFS 279 (633)
T ss_pred EEEeccChHHHHHHHHHHHHhcCCCCC
Confidence 447899999999999998876544444
No 68
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=93.61 E-value=0.16 Score=33.85 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++..+.+.+.+. .-..++|+|.||.++..++...
T Consensus 52 ~~~~~~~~~~~~~---~~~~lvG~S~Gg~~a~~~a~~~ 86 (245)
T TIGR01738 52 LADAAEAIAAQAP---DPAIWLGWSLGGLVALHIAATH 86 (245)
T ss_pred HHHHHHHHHHhCC---CCeEEEEEcHHHHHHHHHHHHC
Confidence 4444444444332 3467999999999999888764
No 69
>PRK10985 putative hydrolase; Provisional
Probab=93.56 E-value=0.15 Score=37.41 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=18.0
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-..++|+|.||.+++.++....
T Consensus 132 ~~~~vG~S~GG~i~~~~~~~~~ 153 (324)
T PRK10985 132 PTAAVGYSLGGNMLACLLAKEG 153 (324)
T ss_pred CEEEEEecchHHHHHHHHHhhC
Confidence 3689999999999888877653
No 70
>PLN02408 phospholipase A1
Probab=93.31 E-value=0.19 Score=38.30 Aligned_cols=36 Identities=31% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhC--C-ceEEEeechHHHHHHHHHhhhc
Q psy2496 59 SFPFIEEVIRSKG--P-FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 59 s~~~l~~~i~~~g--p-~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.++.|.+.+++.+ + -+.|.|+|.||+||+..+....
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl~ 222 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDIK 222 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHHH
Confidence 3455566665543 2 2678899999999999887653
No 71
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.28 E-value=0.17 Score=36.62 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHh---hCCceEEEeechHHHHHHHHHhhhccCcc
Q psy2496 54 TGFNESFPFIEEVIRS---KGPFDGILGFSQGAELLGLICCLKSKNCK 98 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~---~gp~dgilGFSQGa~~a~~l~~~~~~~~~ 98 (102)
.+++.-.+.|.+.|.. ..| -.++|+|.||++|..++.+.|+...
T Consensus 54 ~di~~Lad~la~el~~~~~d~P-~alfGHSmGa~lAfEvArrl~~~g~ 100 (244)
T COG3208 54 TDIESLADELANELLPPLLDAP-FALFGHSMGAMLAFEVARRLERAGL 100 (244)
T ss_pred ccHHHHHHHHHHHhccccCCCC-eeecccchhHHHHHHHHHHHHHcCC
Confidence 4454444555555541 123 5699999999999999998876543
No 72
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=93.26 E-value=0.23 Score=38.12 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=24.7
Q ss_pred HHHHHHHHhhC----CceEEEeechHHHHHHHHHhhhc
Q psy2496 61 PFIEEVIRSKG----PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 61 ~~l~~~i~~~g----p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..+.+++.... .-++|+|+|+||.+|..++....
T Consensus 250 ~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p 287 (414)
T PRK05077 250 QAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEP 287 (414)
T ss_pred HHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCC
Confidence 44555665432 34789999999999999887653
No 73
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=93.24 E-value=0.19 Score=34.95 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=24.8
Q ss_pred HHHHHHHHhhC---Cc-eEEEeechHHHHHHHHHhhhc
Q psy2496 61 PFIEEVIRSKG---PF-DGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 61 ~~l~~~i~~~g---p~-dgilGFSQGa~~a~~l~~~~~ 94 (102)
+.|..+|+++- +. .+|+|+|.||..|+.+++.+.
T Consensus 100 ~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~P 137 (251)
T PF00756_consen 100 EELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHP 137 (251)
T ss_dssp THHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHST
T ss_pred ccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCc
Confidence 45556665541 11 789999999999999998753
No 74
>COG1647 Esterase/lipase [General function prediction only]
Probab=93.23 E-value=0.25 Score=35.53 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.5
Q ss_pred CceEEEeechHHHHHHHHHhhhcc
Q psy2496 72 PFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
+-+.|+|+|.||.+|+.|+.....
T Consensus 85 ~eI~v~GlSmGGv~alkla~~~p~ 108 (243)
T COG1647 85 DEIAVVGLSMGGVFALKLAYHYPP 108 (243)
T ss_pred CeEEEEeecchhHHHHHHHhhCCc
Confidence 568899999999999999887653
No 75
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=93.21 E-value=0.19 Score=38.24 Aligned_cols=34 Identities=21% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 61 PFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 61 ~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+.+.+++++.+ +-..|+|+|+||.+|+.+++.+.
T Consensus 164 ~~i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~~p 198 (402)
T PLN02894 164 DSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHP 198 (402)
T ss_pred HHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCc
Confidence 34445554433 34669999999999999988753
No 76
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=93.08 E-value=0.18 Score=36.67 Aligned_cols=20 Identities=25% Similarity=0.168 Sum_probs=17.0
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
..|+|.|.||++|+.++...
T Consensus 136 i~l~GhSmGG~ia~~~a~~~ 155 (330)
T PLN02298 136 RFLYGESMGGAICLLIHLAN 155 (330)
T ss_pred EEEEEecchhHHHHHHHhcC
Confidence 68999999999998877643
No 77
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=93.06 E-value=0.1 Score=40.00 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=19.5
Q ss_pred ceEEEeechHHHHHHHHHhhhccC
Q psy2496 73 FDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
-+|++|||.||..+..|+.+-++=
T Consensus 227 RIG~~GfSmGg~~a~~LaALDdRI 250 (390)
T PF12715_consen 227 RIGCMGFSMGGYRAWWLAALDDRI 250 (390)
T ss_dssp EEEEEEEGGGHHHHHHHHHH-TT-
T ss_pred ceEEEeecccHHHHHHHHHcchhh
Confidence 578999999999999998886553
No 78
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=93.04 E-value=0.21 Score=36.82 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHhh-------CCceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSK-------GPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~-------gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+++.-++.+.++++.. +.-..|+|+|.||++|+.+++.+.
T Consensus 138 ~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p 184 (349)
T PLN02385 138 SFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQP 184 (349)
T ss_pred CHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCc
Confidence 4444455555555432 113679999999999998877643
No 79
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=93.03 E-value=0.16 Score=37.44 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhh
Q psy2496 55 GFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~ 92 (102)
.+.+-++.+-+.+++.. .=..++||||||-++=.++-+
T Consensus 60 ~v~~Qv~~vc~~l~~~p~L~~G~~~IGfSQGgl~lRa~vq~ 100 (279)
T PF02089_consen 60 NVNDQVEQVCEQLANDPELANGFNAIGFSQGGLFLRAYVQR 100 (279)
T ss_dssp HHHHHHHHHHHHHHH-GGGTT-EEEEEETCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhChhhhcceeeeeeccccHHHHHHHHH
Confidence 34555555666665421 113489999999988766654
No 80
>KOG2541|consensus
Probab=93.03 E-value=0.15 Score=37.55 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=28.2
Q ss_pred hHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 52 IVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
..+.++.+++.|. .+.+...=..|+|+|||+.++=.++-.
T Consensus 73 l~~Qv~~~ce~v~-~m~~lsqGynivg~SQGglv~Raliq~ 112 (296)
T KOG2541|consen 73 LWEQVDVACEKVK-QMPELSQGYNIVGYSQGGLVARALIQF 112 (296)
T ss_pred HHHHHHHHHHHHh-cchhccCceEEEEEccccHHHHHHHHh
Confidence 3577777888887 555542224599999999998776643
No 81
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=92.99 E-value=0.31 Score=35.19 Aligned_cols=39 Identities=18% Similarity=-0.010 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 56 FNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+++..+.+..+++..+ .-..++|+|.||.++..++.+..
T Consensus 78 ~~~~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p 117 (306)
T TIGR01249 78 TWDLVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHP 117 (306)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHCh
Confidence 3444555555555433 33679999999999999987653
No 82
>PLN00021 chlorophyllase
Probab=92.89 E-value=0.24 Score=36.72 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.2
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-.+|+|+|.||.+|..+++...
T Consensus 127 ~v~l~GHS~GG~iA~~lA~~~~ 148 (313)
T PLN00021 127 KLALAGHSRGGKTAFALALGKA 148 (313)
T ss_pred heEEEEECcchHHHHHHHhhcc
Confidence 4789999999999999998654
No 83
>PLN02454 triacylglycerol lipase
Probab=92.75 E-value=0.28 Score=38.04 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhCC---ceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRSKGP---FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp---~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+..|.+++++... -+.|.|+|.||+||+..+...
T Consensus 211 qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di 249 (414)
T PLN02454 211 QLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDI 249 (414)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHH
Confidence 344455555554422 266899999999999988754
No 84
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=92.62 E-value=0.43 Score=32.96 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=34.9
Q ss_pred HhhHHHHHHHHHHHHHhhCC-ceEEEeechHHHHHHHHHhhhccC
Q psy2496 53 VTGFNESFPFIEEVIRSKGP-FDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp-~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
....+++++.+.+.|++..+ .+.|+|=|.||-.|..++.+...+
T Consensus 39 ~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~ 83 (187)
T PF05728_consen 39 PPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLP 83 (187)
T ss_pred CcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCC
Confidence 34567788888999988653 489999999999999998766543
No 85
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=92.53 E-value=0.35 Score=36.04 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
.+++-.+.+.+++++.+ .-..|+|+|.||.++..++..
T Consensus 137 ~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~ 175 (360)
T PLN02679 137 TMETWAELILDFLEEVVQKPTVLIGNSVGSLACVIAASE 175 (360)
T ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHh
Confidence 45556667777777654 346799999999998877764
No 86
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=92.47 E-value=0.28 Score=35.73 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=24.6
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
|.+.++|+| |+|.|.|=|.||.+++.++..
T Consensus 28 VL~aLeE~gi~~d~v~GtSaGAiiga~ya~g 58 (269)
T cd07227 28 ILQALEEAGIPIDAIGGTSIGSFVGGLYARE 58 (269)
T ss_pred HHHHHHHcCCCccEEEEECHHHHHHHHHHcC
Confidence 445555554 999999999999999999875
No 87
>PHA02857 monoglyceride lipase; Provisional
Probab=92.40 E-value=0.38 Score=33.78 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=17.7
Q ss_pred eEEEeechHHHHHHHHHhhhc
Q psy2496 74 DGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~~ 94 (102)
..|+|+|.||.+|..++.+..
T Consensus 99 ~~lvG~S~GG~ia~~~a~~~p 119 (276)
T PHA02857 99 VFLLGHSMGATISILAAYKNP 119 (276)
T ss_pred EEEEEcCchHHHHHHHHHhCc
Confidence 569999999999998887643
No 88
>PLN02511 hydrolase
Probab=92.31 E-value=0.26 Score=37.27 Aligned_cols=23 Identities=22% Similarity=0.059 Sum_probs=19.2
Q ss_pred ceEEEeechHHHHHHHHHhhhcc
Q psy2496 73 FDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
-..++|||.||.+++.++..+..
T Consensus 174 ~~~lvG~SlGg~i~~~yl~~~~~ 196 (388)
T PLN02511 174 NLYAAGWSLGANILVNYLGEEGE 196 (388)
T ss_pred CEEEEEechhHHHHHHHHHhcCC
Confidence 36789999999999999887653
No 89
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=91.83 E-value=0.34 Score=38.61 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEeechHHHHHHH
Q psy2496 55 GFNESFPFIEEVIRSKGPFDGILGFSQGAELLGL 88 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~ 88 (102)
++.++++.|.+.. ..+-+.++|||+||++++.
T Consensus 247 ~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ 278 (532)
T TIGR01838 247 GVIAALEVVEAIT--GEKQVNCVGYCIGGTLLST 278 (532)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHH
Confidence 3444444444332 1245889999999999755
No 90
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=91.79 E-value=0.5 Score=36.81 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=18.5
Q ss_pred CceEEEeechHHHHHHHHHhhh
Q psy2496 72 PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.-+.|+|+|+||.++..++.++
T Consensus 162 ~kV~LVGHSMGGlva~~fl~~~ 183 (440)
T PLN02733 162 KKVNIISHSMGGLLVKCFMSLH 183 (440)
T ss_pred CCEEEEEECHhHHHHHHHHHHC
Confidence 3577999999999999888764
No 91
>PRK07581 hypothetical protein; Validated
Probab=91.58 E-value=0.52 Score=34.47 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=21.8
Q ss_pred HHHhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 66 VIRSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 66 ~i~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+++..| ++..|+|.|.||.+|..++.++.
T Consensus 116 l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P 146 (339)
T PRK07581 116 LTEKFGIERLALVVGWSMGAQQTYHWAVRYP 146 (339)
T ss_pred HHHHhCCCceEEEEEeCHHHHHHHHHHHHCH
Confidence 334344 33568999999999999998764
No 92
>PLN02571 triacylglycerol lipase
Probab=91.48 E-value=0.33 Score=37.58 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhCC---ceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGP---FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp---~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.++.|.++++.... -+.|.|+|.||+||+..+...
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~dl 247 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVDI 247 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHHH
Confidence 3444556666654321 357999999999999988754
No 93
>PLN02802 triacylglycerol lipase
Probab=91.39 E-value=0.4 Score=38.07 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhC-C--ceEEEeechHHHHHHHHHhhhc
Q psy2496 59 SFPFIEEVIRSKG-P--FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 59 s~~~l~~~i~~~g-p--~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.++.|.+++++.. + -+.|.|+|.||+||+..+....
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL~ 352 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADELA 352 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHHH
Confidence 3445555555432 2 3568899999999998887654
No 94
>KOG1552|consensus
Probab=91.36 E-value=0.23 Score=36.21 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=33.0
Q ss_pred hhHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 51 NIVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+.+++++.+.++|++--. ...-+++.|+|.|+..+..|+.+.+
T Consensus 110 n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~ 152 (258)
T KOG1552|consen 110 NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP 152 (258)
T ss_pred cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC
Confidence 457788777777776653 2235889999999999999988876
No 95
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=91.22 E-value=0.58 Score=35.94 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=35.6
Q ss_pred HhhHHHHHHHHHHHHHhhC--C-ceEEEeechHHHHHHHHHhhhccCccC
Q psy2496 53 VTGFNESFPFIEEVIRSKG--P-FDGILGFSQGAELLGLICCLKSKNCKY 99 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g--p-~dgilGFSQGa~~a~~l~~~~~~~~~~ 99 (102)
..+...|+++|++.|..-| | -+-|+|.|-||+.+..+++....+..|
T Consensus 186 l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF 235 (535)
T PF00135_consen 186 LLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLF 235 (535)
T ss_dssp HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSB
T ss_pred hhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccc
Confidence 3466679999999998865 2 567999999999988888774433333
No 96
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=91.22 E-value=0.39 Score=36.96 Aligned_cols=22 Identities=14% Similarity=-0.191 Sum_probs=18.8
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-.+|+|+|+||.+|+.+++.+.
T Consensus 289 ~~~IaG~S~GGl~AL~~al~~P 310 (411)
T PRK10439 289 RTVVAGQSFGGLAALYAGLHWP 310 (411)
T ss_pred ceEEEEEChHHHHHHHHHHhCc
Confidence 4579999999999999988753
No 97
>PLN02310 triacylglycerol lipase
Probab=91.15 E-value=0.48 Score=36.66 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=18.1
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-+.|.|+|.||+||+..+....
T Consensus 210 sI~vTGHSLGGALAtLaA~dl~ 231 (405)
T PLN02310 210 SLTVTGHSLGGALALLNAYEAA 231 (405)
T ss_pred eEEEEcccHHHHHHHHHHHHHH
Confidence 3568899999999998887653
No 98
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=91.12 E-value=0.68 Score=34.00 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHhh--CCceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPFIEEVIRSK--GPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~--gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
......++.+.+.+.+. +.-..|+|+|.||.+|+.++....
T Consensus 87 ~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~ 129 (298)
T COG2267 87 ADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYP 129 (298)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCC
Confidence 33333444444444432 345779999999999999988765
No 99
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=91.08 E-value=0.47 Score=42.40 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.++...+.+.++++..+ .-..|+|+|+||.+|..++..+.
T Consensus 1427 si~~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P 1467 (1655)
T PLN02980 1427 SVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFS 1467 (1655)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhCh
Confidence 35555566666666543 34669999999999999987654
No 100
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=91.05 E-value=0.45 Score=35.18 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.0
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
..|+|+|.||.+++.++...
T Consensus 144 ~~l~GhSmGg~i~~~~~~~~ 163 (332)
T TIGR01607 144 MYIIGLSMGGNIALRLLELL 163 (332)
T ss_pred eeEeeccCccHHHHHHHHHh
Confidence 67999999999999887654
No 101
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=91.04 E-value=0.37 Score=35.68 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 62 FIEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 62 ~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
-+.+.++|+| ++|.|.|=|.||.+++.++.-
T Consensus 32 GvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g 63 (306)
T cd07225 32 GVIKALEEAGIPVDMVGGTSIGAFIGALYAEE 63 (306)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcC
Confidence 3455555554 899999999999999999875
No 102
>PLN02934 triacylglycerol lipase
Probab=90.85 E-value=0.54 Score=37.37 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhCC-ceEEEeechHHHHHHHHHhh
Q psy2496 59 SFPFIEEVIRSKGP-FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 59 s~~~l~~~i~~~gp-~dgilGFSQGa~~a~~l~~~ 92 (102)
....|++++++... -..|.|+|.||+||+..+..
T Consensus 307 v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~~ 341 (515)
T PLN02934 307 VRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPTV 341 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHHH
Confidence 34456666665533 35588999999999988753
No 103
>PRK03204 haloalkane dehalogenase; Provisional
Probab=90.83 E-value=0.62 Score=33.40 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 56 FNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
++...+.+.++++..+ .-..++|+|.||.+|..++..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p 123 (286)
T PRK03204 84 IDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERA 123 (286)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhCh
Confidence 4445555666665543 34679999999999999887643
No 104
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=90.78 E-value=0.37 Score=38.70 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=15.2
Q ss_pred CceEEEeechHHHHHHH
Q psy2496 72 PFDGILGFSQGAELLGL 88 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~ 88 (102)
+-+.++|+|+||+|++.
T Consensus 288 ~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 288 RDLNLLGACAGGLTCAA 304 (560)
T ss_pred CCeeEEEECcchHHHHH
Confidence 46789999999999997
No 105
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=90.76 E-value=0.35 Score=37.67 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhccC
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
+++.++++.|++...+ .-+.++|+||||++++.++.+....
T Consensus 165 e~l~~aid~v~~itg~--~~InliGyCvGGtl~~~ala~~~~k 205 (445)
T COG3243 165 EGLSEAIDTVKDITGQ--KDINLIGYCVGGTLLAAALALMAAK 205 (445)
T ss_pred HHHHHHHHHHHHHhCc--cccceeeEecchHHHHHHHHhhhhc
Confidence 4444455544444432 3467999999999998888776543
No 106
>KOG2564|consensus
Probab=90.64 E-value=0.32 Score=36.32 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 64 EEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 64 ~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+...+..|-+.++|+|.||++|+..+...
T Consensus 138 ~~~fge~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 138 KELFGELPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred HHHhccCCCceEEEeccccchhhhhhhhhh
Confidence 333334567788999999999998776643
No 107
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=90.54 E-value=0.4 Score=37.91 Aligned_cols=21 Identities=33% Similarity=0.197 Sum_probs=18.3
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
-++++|+|.||.++..++...
T Consensus 98 ~v~~~G~S~GG~~a~~~a~~~ 118 (550)
T TIGR00976 98 NVGMLGVSYLAVTQLLAAVLQ 118 (550)
T ss_pred cEEEEEeChHHHHHHHHhccC
Confidence 589999999999998888764
No 108
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=90.46 E-value=0.98 Score=32.30 Aligned_cols=21 Identities=14% Similarity=-0.113 Sum_probs=17.2
Q ss_pred CceEEEeechHHHHHHHHHhh
Q psy2496 72 PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~ 92 (102)
+-+.++|+|.||.+++.++..
T Consensus 100 ~~i~l~G~S~Gg~~a~~~a~~ 120 (274)
T TIGR03100 100 RRIVAWGLCDAASAALLYAPA 120 (274)
T ss_pred CcEEEEEECHHHHHHHHHhhh
Confidence 447899999999998888654
No 109
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=90.34 E-value=0.26 Score=39.70 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHhhCC----ceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKGP----FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp----~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++.++.+. ++.+.+- .++|+|+|-||-|++.++.+..
T Consensus 453 ~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~ 495 (620)
T COG1506 453 DLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP 495 (620)
T ss_pred cHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc
Confidence 3444444555 5555543 4589999999999998887654
No 110
>PLN02324 triacylglycerol lipase
Probab=90.27 E-value=0.47 Score=36.81 Aligned_cols=35 Identities=14% Similarity=-0.047 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCC---ceEEEeechHHHHHHHHHhhh
Q psy2496 59 SFPFIEEVIRSKGP---FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 59 s~~~l~~~i~~~gp---~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++.|.++++.... -+.|.|+|.||+||+..+...
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~dl 236 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAADL 236 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHHH
Confidence 34455666654321 366889999999999988754
No 111
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=90.26 E-value=0.9 Score=32.78 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=32.8
Q ss_pred HhhHHHHHHHHHHHHHh---hCCceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRS---KGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~---~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.++++.-++.|++++.+ ..+-..++|.|-||-|+..++.+..
T Consensus 62 ~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~ 106 (266)
T PF10230_consen 62 QDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLP 106 (266)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhcc
Confidence 46677777777777765 3356779999999999999998766
No 112
>PRK05855 short chain dehydrogenase; Validated
Probab=90.24 E-value=0.67 Score=35.84 Aligned_cols=38 Identities=13% Similarity=-0.063 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhhCC--ceEEEeechHHHHHHHHHhh
Q psy2496 55 GFNESFPFIEEVIRSKGP--FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp--~dgilGFSQGa~~a~~l~~~ 92 (102)
++++..+.+.++++..++ ...|+|+|.||.++..++..
T Consensus 75 ~~~~~a~dl~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 75 TLARLADDFAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEecChHHHHHHHHHhC
Confidence 456666777777766542 26799999999888776655
No 113
>PRK10349 carboxylesterase BioH; Provisional
Probab=90.23 E-value=0.61 Score=32.39 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.6
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
-..++|+|.||.+|..++...
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~ 95 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTH 95 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhC
Confidence 356899999999999988754
No 114
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=90.11 E-value=0.57 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=22.8
Q ss_pred HHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 65 EVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 65 ~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.++|+| +||.|.|=|-||.+|+.+++..
T Consensus 20 ~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~ 49 (175)
T cd07228 20 RALEEEGIEIDIIAGSSIGALVGALYAAGH 49 (175)
T ss_pred HHHHHCCCCeeEEEEeCHHHHHHHHHHcCC
Confidence 3334444 7999999999999999988753
No 115
>PLN00413 triacylglycerol lipase
Probab=90.00 E-value=0.74 Score=36.34 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCC-ceEEEeechHHHHHHHHHhh
Q psy2496 59 SFPFIEEVIRSKGP-FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 59 s~~~l~~~i~~~gp-~dgilGFSQGa~~a~~l~~~ 92 (102)
..+.|.+++++... -..|.|+|.||+||+..+..
T Consensus 270 i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~~ 304 (479)
T PLN00413 270 ILRHLKEIFDQNPTSKFILSGHSLGGALAILFTAV 304 (479)
T ss_pred HHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHHH
Confidence 34566666666532 35688999999999987753
No 116
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=89.81 E-value=0.83 Score=35.71 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.2
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
-+.|+|||.||.+|..++...
T Consensus 120 ~VhLIGHSLGAhIAg~ag~~~ 140 (442)
T TIGR03230 120 NVHLLGYSLGAHVAGIAGSLT 140 (442)
T ss_pred cEEEEEECHHHHHHHHHHHhC
Confidence 467999999999999988764
No 117
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=89.72 E-value=1 Score=34.90 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhCC----ceEEEeechHHHHHHHHHhhhc
Q psy2496 57 NESFPFIEEVIRSKGP----FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp----~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+...+.|.+++.+..- .++++|||.||-+|..++.++.
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~ 283 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALED 283 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcc
Confidence 3455677777766532 4679999999999999997654
No 118
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=89.68 E-value=0.41 Score=33.77 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=28.8
Q ss_pred hHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhccC
Q psy2496 52 IVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
+.++...+++++.+.-.+ -+.-.++|||=|+.++..++...+..
T Consensus 84 E~~Da~aaldW~~~~hp~-s~~~~l~GfSFGa~Ia~~la~r~~e~ 127 (210)
T COG2945 84 ELEDAAAALDWLQARHPD-SASCWLAGFSFGAYIAMQLAMRRPEI 127 (210)
T ss_pred hHHHHHHHHHHHHhhCCC-chhhhhcccchHHHHHHHHHHhcccc
Confidence 455555555555443221 13345799999999999999887543
No 119
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=89.68 E-value=0.99 Score=35.57 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=28.2
Q ss_pred hHHHHHHHHH-HHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIE-EVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~-~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++..+.+. .+++..+ .-..++|.|+||.+|..++.++.
T Consensus 255 tl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~P 296 (481)
T PLN03087 255 TLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHP 296 (481)
T ss_pred CHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhCh
Confidence 4555556663 5565543 34669999999999999988754
No 120
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=89.57 E-value=0.53 Score=34.33 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.7
Q ss_pred hHhhHHHHHHHHHHHHHhhC--------CceEEEeechHHHHHHHHHhhhcc
Q psy2496 52 IVTGFNESFPFIEEVIRSKG--------PFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~g--------p~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
+.+...+.++++.+-++..- ...+|+|+|+||-+|..+++.+..
T Consensus 63 ~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~ 114 (259)
T PF12740_consen 63 EVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNAS 114 (259)
T ss_pred hHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcc
Confidence 45566666666666444331 146799999999999998887743
No 121
>PLN03037 lipase class 3 family protein; Provisional
Probab=89.49 E-value=0.65 Score=37.03 Aligned_cols=20 Identities=30% Similarity=0.139 Sum_probs=17.1
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
+-|.|+|.||+||+..+...
T Consensus 320 ItVTGHSLGGALAtLaA~DI 339 (525)
T PLN03037 320 LTITGHSLGGALALLNAYEA 339 (525)
T ss_pred EEEeccCHHHHHHHHHHHHH
Confidence 56889999999999888654
No 122
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.46 E-value=0.17 Score=37.48 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=20.9
Q ss_pred CceEEEeechHHHHHHHHHhhhccC
Q psy2496 72 PFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
..+++-|-||||++|+..+.+..+-
T Consensus 176 ~Ri~v~G~SqGGglalaaaal~~ri 200 (321)
T COG3458 176 ERIGVTGGSQGGGLALAAAALDPRI 200 (321)
T ss_pred hheEEeccccCchhhhhhhhcChhh
Confidence 3689999999999999988876544
No 123
>PLN02162 triacylglycerol lipase
Probab=89.43 E-value=0.99 Score=35.62 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHhhCC-ceEEEeechHHHHHHHHHh
Q psy2496 61 PFIEEVIRSKGP-FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 61 ~~l~~~i~~~gp-~dgilGFSQGa~~a~~l~~ 91 (102)
+.|++.+.+... -..|.|+|.||+||+..+.
T Consensus 266 ~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 266 QMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 344555555433 4568899999999988755
No 124
>PLN02753 triacylglycerol lipase
Probab=89.43 E-value=0.78 Score=36.63 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhh----CC--ceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSK----GP--FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~----gp--~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.++.|.+.+++. +| -+.|.|+|.||+||+..+...
T Consensus 291 eQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~Dl 333 (531)
T PLN02753 291 EQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYDI 333 (531)
T ss_pred HHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHHH
Confidence 33445556665542 12 455889999999999988643
No 125
>PLN02719 triacylglycerol lipase
Probab=89.38 E-value=0.79 Score=36.49 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhh----CC--ceEEEeechHHHHHHHHHhhh
Q psy2496 59 SFPFIEEVIRSK----GP--FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 59 s~~~l~~~i~~~----gp--~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++.|.+.++.. |+ -+.|.|+|.||+||+..+...
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~Dl 319 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYDV 319 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHHH
Confidence 444555555432 22 356889999999999988754
No 126
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=89.27 E-value=1.4 Score=33.69 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.9
Q ss_pred ceEEEeechHHHHHHHHHh
Q psy2496 73 FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~ 91 (102)
-..|+|+|.||.+++.++.
T Consensus 209 ~i~lvGhSmGG~ial~~a~ 227 (395)
T PLN02652 209 PCFLFGHSTGGAVVLKAAS 227 (395)
T ss_pred CEEEEEECHHHHHHHHHHh
Confidence 3679999999999987654
No 127
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=88.96 E-value=1.6 Score=32.30 Aligned_cols=44 Identities=11% Similarity=0.019 Sum_probs=35.2
Q ss_pred HhhHHHHHHHHHHHHHhhCCc-eEEEeechHHHHHHHHHhhhccC
Q psy2496 53 VTGFNESFPFIEEVIRSKGPF-DGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~-dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
.+.+.+.++.+.++.++.|.+ ..|+|++.||.+++.++...+..
T Consensus 173 ~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~ 217 (310)
T PF12048_consen 173 EERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPP 217 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCc
Confidence 456666677777777787766 89999999999999999876643
No 128
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=88.89 E-value=0.73 Score=35.09 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHH----hhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 57 NESFPFIEEVIR----SKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 57 ~~s~~~l~~~i~----~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
++....|++.|+ .++.-+.|+|+|+||.++..++....
T Consensus 100 ~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~ 141 (389)
T PF02450_consen 100 DEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMP 141 (389)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhcc
Confidence 344445555554 34667889999999999998887764
No 129
>KOG1838|consensus
Probab=88.76 E-value=0.75 Score=35.65 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=32.4
Q ss_pred hhHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhccCc
Q psy2496 51 NIVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSKNC 97 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~~~~ 97 (102)
...+++++++++|+...-+. --..+|||.||+|.+-++...+.+.
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYLGE~g~~~ 223 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYLGEEGDNT 223 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHhhhccCCC
Confidence 34567777666666555333 3568999999999999998876654
No 130
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=88.73 E-value=1 Score=29.47 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhcc
Q psy2496 60 FPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 60 ~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
.+.+..+++..+ .-..++|+|+||.++..++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~ 111 (282)
T COG0596 75 ADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPD 111 (282)
T ss_pred HHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhcch
Confidence 566666666544 236799999999999988887653
No 131
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=88.61 E-value=0.73 Score=33.72 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=15.8
Q ss_pred CceEEEeechHHHHHHHHHhh
Q psy2496 72 PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~ 92 (102)
.-+++.|+||||.-+...+.+
T Consensus 71 ~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 71 SRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred CCEEEEeeCccHHHHHHHHHH
Confidence 358899999998877665544
No 132
>KOG2624|consensus
Probab=88.53 E-value=0.28 Score=37.82 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=28.4
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
..++.+.+++|.+.-. .+....+|||||++....++...
T Consensus 144 ~yDLPA~IdyIL~~T~--~~kl~yvGHSQGtt~~fv~lS~~ 182 (403)
T KOG2624|consen 144 TYDLPAMIDYILEKTG--QEKLHYVGHSQGTTTFFVMLSER 182 (403)
T ss_pred hcCHHHHHHHHHHhcc--ccceEEEEEEccchhheehhccc
Confidence 4566666777666552 24678999999999888777765
No 133
>PRK10279 hypothetical protein; Provisional
Probab=88.52 E-value=0.77 Score=33.98 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.++|+| ++|.|.|=|.||.+++.++.-
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g 53 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACD 53 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcC
Confidence 445555555 899999999999999999864
No 134
>KOG1454|consensus
Probab=88.35 E-value=1.1 Score=33.39 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=32.2
Q ss_pred HhhHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.-...+-++.+.+++.+.+ | .-++|+|-||.+|..++....
T Consensus 108 ~y~~~~~v~~i~~~~~~~~~~~-~~lvghS~Gg~va~~~Aa~~P 150 (326)
T KOG1454|consen 108 LYTLRELVELIRRFVKEVFVEP-VSLVGHSLGGIVALKAAAYYP 150 (326)
T ss_pred ceehhHHHHHHHHHHHhhcCcc-eEEEEeCcHHHHHHHHHHhCc
Confidence 3566667777888887753 4 679999999999999998754
No 135
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=88.23 E-value=1.3 Score=33.88 Aligned_cols=43 Identities=19% Similarity=0.116 Sum_probs=35.0
Q ss_pred HhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhcc
Q psy2496 53 VTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
..++.++++.....++++| .-+.+||=|-||.+++.++....+
T Consensus 175 PtQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~ 218 (374)
T PF10340_consen 175 PTQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKK 218 (374)
T ss_pred chHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhh
Confidence 5678888888888886665 357799999999999999987665
No 136
>PRK07868 acyl-CoA synthetase; Validated
Probab=87.75 E-value=1.5 Score=37.25 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHh----hCCceEEEeechHHHHHHHHHhhh
Q psy2496 55 GFNESFPFIEEVIRS----KGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~----~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.+.+..+.+.++. .+.-..++|+|+||++++.++.++
T Consensus 120 ~l~~~i~~l~~~l~~v~~~~~~~v~lvG~s~GG~~a~~~aa~~ 162 (994)
T PRK07868 120 NLADHVVALSEAIDTVKDVTGRDVHLVGYSQGGMFCYQAAAYR 162 (994)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCceEEEEEChhHHHHHHHHHhc
Confidence 444444455555432 234578999999999999888754
No 137
>KOG3724|consensus
Probab=87.59 E-value=1.2 Score=37.56 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=29.3
Q ss_pred hHhhHHHHHHHHHHHHHh--hC----C-ceEEEeechHHHHHHHHHhhh
Q psy2496 52 IVTGFNESFPFIEEVIRS--KG----P-FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~--~g----p-~dgilGFSQGa~~a~~l~~~~ 93 (102)
..+-+.+|+.+|.+..++ ++ | -+.++|+|+||.+|-.++.+.
T Consensus 155 QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlk 203 (973)
T KOG3724|consen 155 QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLK 203 (973)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhh
Confidence 345566677777777766 22 2 255889999999997776654
No 138
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=87.43 E-value=0.92 Score=33.02 Aligned_cols=20 Identities=20% Similarity=0.046 Sum_probs=18.4
Q ss_pred ceEEEeechHHHHHHHHHhh
Q psy2496 73 FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~ 92 (102)
||.|.|-|-||.+|+.++.-
T Consensus 35 fD~i~GTSaGaiia~~la~g 54 (288)
T cd07213 35 IDLFAGTSAGSLIALGLALG 54 (288)
T ss_pred eeEEEEeCHHHHHHHHHHcC
Confidence 89999999999999999864
No 139
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=87.41 E-value=1.1 Score=29.84 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=23.8
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+.+.|+| .+|.|.|=|.||.+|+.++...
T Consensus 16 vl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~ 47 (172)
T cd07198 16 VAKALRERGPLIDIIAGTSAGAIVAALLASGR 47 (172)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 334444444 6999999999999999998854
No 140
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=86.67 E-value=1.5 Score=30.60 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHhh--CCceEEEeechHHHHHHHHH
Q psy2496 53 VTGFNESFPFIEEVIRSK--GPFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~--gp~dgilGFSQGa~~a~~l~ 90 (102)
.++...-++.+.+...+. ..-+.++|||+||-+.-.+.
T Consensus 47 P~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~ 86 (192)
T PF06057_consen 47 PEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIY 86 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHH
Confidence 455544444444444332 35678999999996554443
No 141
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=86.44 E-value=2 Score=32.79 Aligned_cols=40 Identities=8% Similarity=-0.086 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 54 TGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
..+++-.+.|.+++++.+ .-..|+|+|.||.++..++..+
T Consensus 178 ys~~~~a~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~ 218 (383)
T PLN03084 178 YTLDEYVSSLESLIDELKSDKVSLVVQGYFSPPVVKYASAH 218 (383)
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEECHHHHHHHHHHHhC
Confidence 356677778888887765 3466999999999988888764
No 142
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=86.26 E-value=1.3 Score=32.30 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=26.4
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
...+..+..+|.+.. +.|.-+.|+|||-||..|=.++-+.
T Consensus 74 ~~~I~~ay~~l~~~~-~~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 74 EARIRDAYRFLSKNY-EPGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred HHHHHHHHHHHHhcc-CCcceEEEEecCccHHHHHHHHHHH
Confidence 445555555554444 2344466999999999997777654
No 143
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.53 E-value=3 Score=31.19 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.4
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
-+-|-|.|-||.|+..|++..
T Consensus 145 RVyvtGlS~GG~Ma~~lac~~ 165 (312)
T COG3509 145 RVYVTGLSNGGRMANRLACEY 165 (312)
T ss_pred eEEEEeeCcHHHHHHHHHhcC
Confidence 577999999999999998764
No 144
>KOG3043|consensus
Probab=84.39 E-value=0.26 Score=35.47 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~ 93 (102)
+-+..+.+.|+.+| -.+|++||.-||.++..+....
T Consensus 104 ~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~ 141 (242)
T KOG3043|consen 104 KDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKD 141 (242)
T ss_pred hHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccc
Confidence 33444455555666 3899999999999887665543
No 145
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=84.08 E-value=3.6 Score=30.84 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.0
Q ss_pred ceEEEeechHHHHHHHHHhhhcc
Q psy2496 73 FDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
-+.|+|||-||-+|..++...+.
T Consensus 151 ~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 151 NIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp GEEEEEETCHHHHHHHHHHHTTT
T ss_pred HEEEEeeccchhhhhhhhhhccC
Confidence 56799999999999999887665
No 146
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=83.72 E-value=1.6 Score=34.11 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=23.8
Q ss_pred hhHhhHHHHHHHHHHHHHhh-C-CceEEEeechHHHH
Q psy2496 51 NIVTGFNESFPFIEEVIRSK-G-PFDGILGFSQGAEL 85 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~~-g-p~dgilGFSQGa~~ 85 (102)
.+.+++..-+..|.++.... + ..+.++||||||=+
T Consensus 303 rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADv 339 (456)
T COG3946 303 RTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGADV 339 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccchh
Confidence 34666666666666666653 3 35779999999854
No 147
>PLN02761 lipase class 3 family protein
Probab=83.42 E-value=2.1 Score=34.22 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=17.1
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
+.|.|+|.||+||+..+...
T Consensus 296 ItVTGHSLGGALAtLaA~DI 315 (527)
T PLN02761 296 ITVTGHSLGASLALVSAYDI 315 (527)
T ss_pred EEEeccchHHHHHHHHHHHH
Confidence 66889999999999888654
No 148
>KOG1455|consensus
Probab=82.90 E-value=2.8 Score=31.38 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.5
Q ss_pred eEEEeechHHHHHHHHHhh
Q psy2496 74 DGILGFSQGAELLGLICCL 92 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~ 92 (102)
--++|.|+||++++.+.+.
T Consensus 131 ~FL~GeSMGGAV~Ll~~~k 149 (313)
T KOG1455|consen 131 RFLFGESMGGAVALLIALK 149 (313)
T ss_pred eeeeecCcchHHHHHHHhh
Confidence 4589999999999988876
No 149
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=82.62 E-value=2.5 Score=29.71 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=23.0
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.++|+| +++.|.|=|-||.+|+.++..
T Consensus 18 vL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g 48 (221)
T cd07210 18 FLAALLEMGLEPSAISGTSAGALVGGLFASG 48 (221)
T ss_pred HHHHHHHcCCCceEEEEeCHHHHHHHHHHcC
Confidence 334444444 789999999999999999873
No 150
>PRK04940 hypothetical protein; Provisional
Probab=82.42 E-value=5 Score=27.74 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHh--h-C--CceEEEeechHHHHHHHHHhhhccC
Q psy2496 56 FNESFPFIEEVIRS--K-G--PFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 56 ~~~s~~~l~~~i~~--~-g--p~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
-+++++.+.+.|.+ . + .-++|+|=|-||-.|..|+.+...+
T Consensus 39 P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~~g~~ 84 (180)
T PRK04940 39 PKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFLCGIR 84 (180)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHHHCCC
Confidence 34556666666653 1 1 2378999999999999999887643
No 151
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=82.41 E-value=2.8 Score=28.30 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHh
Q psy2496 55 GFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
.+++=++.|.+.|....+-+.++|+|-||..++.++.
T Consensus 38 ~~~~W~~~l~~~i~~~~~~~ilVaHSLGc~~~l~~l~ 74 (171)
T PF06821_consen 38 DLDEWVQALDQAIDAIDEPTILVAHSLGCLTALRWLA 74 (171)
T ss_dssp -HHHHHHHHHHCCHC-TTTEEEEEETHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEeCHHHHHHHHHHh
Confidence 3444445555555543333789999999999999995
No 152
>KOG1516|consensus
Probab=82.31 E-value=2.9 Score=32.70 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=32.4
Q ss_pred HhhHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhh
Q psy2496 53 VTGFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~ 92 (102)
..+...|+++|++.|..-| .-+-|+|.|.||+.+..+++-
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~S 215 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLS 215 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcC
Confidence 3467789999999998754 257799999999999877764
No 153
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=82.25 E-value=3.2 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 64 EEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 64 ~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+.++|++ ++|.|.|=|-||.+|+.+++..
T Consensus 18 l~~L~e~~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 18 LKALEEAGILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHHHcCCCcceEEEECHHHHHHHHHHcCC
Confidence 33444444 6799999999999999998753
No 154
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=81.95 E-value=2.3 Score=31.20 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 61 PFIEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 61 ~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
--|.+.+.|.| +++.|.|=|.||.+++.++..
T Consensus 27 iGVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g 59 (306)
T COG1752 27 IGVLKALEEAGIPIDVIAGTSAGAIVAALYAAG 59 (306)
T ss_pred HHHHHHHHHcCCCccEEEecCHHHHHHHHHHcC
Confidence 34566666777 899999999999999999985
No 155
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=80.73 E-value=3.9 Score=29.15 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred CceEEEeechHHHHHHHHHhhhc
Q psy2496 72 PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+||.|.|=|-||.+|+.+++.+.
T Consensus 27 ~fd~i~GtSaGAi~a~~~~~g~~ 49 (266)
T cd07208 27 PFDLVIGVSAGALNAASYLSGQR 49 (266)
T ss_pred CCCEEEEECHHHHhHHHHHhCCc
Confidence 39999999999999999988643
No 156
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=80.26 E-value=5.1 Score=27.88 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=25.7
Q ss_pred HhhHHHHHHHHHHHHHh----hC---CceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRS----KG---PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~----~g---p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..+++...+.+.+.|.+ .. ...-++|+|.||.++-.++....
T Consensus 52 ~~gI~~~g~rL~~eI~~~~~~~~~~~~~IsfIgHSLGGli~r~al~~~~ 100 (217)
T PF05057_consen 52 FDGIDVCGERLAEEILEHIKDYESKIRKISFIGHSLGGLIARYALGLLH 100 (217)
T ss_pred chhhHHHHHHHHHHHHHhccccccccccceEEEecccHHHHHHHHHHhh
Confidence 45555555555444433 22 13569999999999976666433
No 157
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=79.68 E-value=4.5 Score=28.13 Aligned_cols=29 Identities=31% Similarity=0.168 Sum_probs=23.3
Q ss_pred HHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 65 EVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 65 ~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+.|.| ++|.|.|=|-||.+|+.+++..
T Consensus 18 ~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~ 47 (215)
T cd07209 18 KALAEAGIEPDIISGTSIGAINGALIAGGD 47 (215)
T ss_pred HHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 3344444 7999999999999999999865
No 158
>COG3150 Predicted esterase [General function prediction only]
Probab=79.63 E-value=6 Score=27.49 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=36.1
Q ss_pred HhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
....+.+++.|.+.|.+.| +.-+|+|=|-||-.|..|+.+.-
T Consensus 39 ~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~G 81 (191)
T COG3150 39 PHDPQQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCG 81 (191)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhC
Confidence 4567788999999999986 66899999999999999987754
No 159
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=79.03 E-value=4.4 Score=30.06 Aligned_cols=19 Identities=37% Similarity=0.329 Sum_probs=18.1
Q ss_pred ceEEEeechHHHHHHHHHh
Q psy2496 73 FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~ 91 (102)
||-|.|=|-||.+|+.++.
T Consensus 33 fD~i~GTStGgiIA~~la~ 51 (312)
T cd07212 33 FDWIAGTSTGGILALALLH 51 (312)
T ss_pred ccEEEeeChHHHHHHHHHc
Confidence 8999999999999999986
No 160
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=78.65 E-value=4 Score=29.41 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHHhhCC-----ceEEEeechHHHHHHHHHhhh
Q psy2496 63 IEEVIRSKGP-----FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 63 l~~~i~~~gp-----~dgilGFSQGa~~a~~l~~~~ 93 (102)
|.+.+.++++ ++.|.|=|-||.+++.++...
T Consensus 18 Vl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~asg~ 53 (252)
T cd07221 18 VTRCLSERAPHLLRDARMFFGASAGALHCVTFLSGL 53 (252)
T ss_pred HHHHHHHhCcchhccCCEEEEEcHHHHHHHHHHhCC
Confidence 4445555564 889999999999999998754
No 161
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=78.51 E-value=3.8 Score=30.32 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHH-HhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 61 PFIEEVI-RSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 61 ~~l~~~i-~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..|.+++ .++-||++|+|=|.||.-.+.+++.|.
T Consensus 28 GVLD~fl~a~~~~f~~~~GvSAGA~n~~aYls~Q~ 62 (292)
T COG4667 28 GVLDEFLRANFNPFDLVVGVSAGALNLVAYLSKQR 62 (292)
T ss_pred HHHHHHHHhccCCcCeeeeecHhHHhHHHHhhcCC
Confidence 4456667 456799999999999999988888764
No 162
>KOG4569|consensus
Probab=78.23 E-value=3.8 Score=30.70 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=18.1
Q ss_pred ceEEEeechHHHHHHHHHhhhcc
Q psy2496 73 FDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
-+-|-|+|-||+||...+...-+
T Consensus 172 ~i~vTGHSLGgAlA~laa~~i~~ 194 (336)
T KOG4569|consen 172 SIWVTGHSLGGALASLAALDLVK 194 (336)
T ss_pred EEEEecCChHHHHHHHHHHHHHH
Confidence 35577999999999988876543
No 163
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=78.08 E-value=8.9 Score=27.77 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHH---hh--CCceEEEeechHHHHHHHHHhhhccC
Q psy2496 55 GFNESFPFIEEVIR---SK--GPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 55 ~~~~s~~~l~~~i~---~~--gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
....-..+|..+|. +. -.-.-++|+|.||..++.++......
T Consensus 81 ~~~~qa~wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~ 127 (255)
T PF06028_consen 81 NYKKQAKWLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGND 127 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccC
Confidence 44444455555543 32 24567999999999999888875443
No 164
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=77.76 E-value=5.9 Score=26.28 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=22.3
Q ss_pred HHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 65 EVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 65 ~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+++++ ++|.|.|=|-||.+|+.++...
T Consensus 20 ~~L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 20 KALEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 3334443 6899999999999999998643
No 165
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=77.01 E-value=6.9 Score=29.77 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCC--ceEEEeechHHHHHHHHHhhhcc
Q psy2496 60 FPFIEEVIRSKGP--FDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 60 ~~~l~~~i~~~gp--~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
+.++.+.++..+| -...+|||-||.|.+-++.....
T Consensus 134 ~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ylgeeg~ 171 (345)
T COG0429 134 IRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLGEEGD 171 (345)
T ss_pred HHHHHHHHHHhCCCCceEEEEecccHHHHHHHHHhhcc
Confidence 3444444444321 35689999999887777765543
No 166
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=76.49 E-value=9.5 Score=26.98 Aligned_cols=42 Identities=19% Similarity=0.018 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHh---h--CCceEEEeechHHHHHHHHHhhhcc
Q psy2496 54 TGFNESFPFIEEVIRS---K--GPFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~---~--gp~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
+....+...+.++|.. . +.-+.|+++|+|+-+....+.....
T Consensus 70 ~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~ 116 (233)
T PF05990_consen 70 ESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLAS 116 (233)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHh
Confidence 4455556666666654 2 3567899999999999887776443
No 167
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=76.32 E-value=4.8 Score=28.72 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHhhCC-----ceEEEeechHHHHHHHHHh
Q psy2496 63 IEEVIRSKGP-----FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 63 l~~~i~~~gp-----~dgilGFSQGa~~a~~l~~ 91 (102)
+.+.+.|+|. ++.|.|=|-||.+|+.++.
T Consensus 17 Vl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 17 AAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 4455556664 7899999999999999974
No 168
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=76.08 E-value=9.4 Score=24.85 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=18.4
Q ss_pred CCceEEEeechHHHHHHHHHhhhc
Q psy2496 71 GPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 71 gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+| ..++|.|.||.++..++...+
T Consensus 64 ~~-~~l~g~s~Gg~~a~~~a~~l~ 86 (212)
T smart00824 64 RP-FVLVGHSSGGLLAHAVAARLE 86 (212)
T ss_pred CC-eEEEEECHHHHHHHHHHHHHH
Confidence 45 468999999999988887643
No 169
>KOG2369|consensus
Probab=75.89 E-value=4.8 Score=31.84 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=35.3
Q ss_pred hHhhHHHHHHHHHHHHHh----hC-CceEEEeechHHHHHHHHHhhhccC
Q psy2496 52 IVTGFNESFPFIEEVIRS----KG-PFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~----~g-p~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
+.+..++.+..++..|+. +| ..+.|+++|+|+.+....+-.++..
T Consensus 157 ~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~~~~ 206 (473)
T KOG2369|consen 157 NSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWVEAE 206 (473)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhccccc
Confidence 356777788888888764 45 6788999999999998888777653
No 170
>KOG2382|consensus
Probab=75.83 E-value=4.4 Score=30.42 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=21.6
Q ss_pred hhHhhHHHHHHHHHHHHHhh--CCceEEEeechHH-HHHHHHH
Q psy2496 51 NIVTGFNESFPFIEEVIRSK--GPFDGILGFSQGA-ELLGLIC 90 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~~--gp~dgilGFSQGa-~~a~~l~ 90 (102)
.++....+.+..+.+..... -.-+.|+|+|.|| .+++...
T Consensus 100 h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t 142 (315)
T KOG2382|consen 100 HNYEAMAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAET 142 (315)
T ss_pred cCHHHHHHHHHHHHHHcccccccCCceecccCcchHHHHHHHH
Confidence 34555555444444444321 1236699999999 4443333
No 171
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=75.63 E-value=4.3 Score=30.31 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=28.6
Q ss_pred HhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~ 93 (102)
....++-..+|.+.+...| +.+.++|+||||.++-.++...
T Consensus 107 ~~~~~ql~~~V~~~l~~~ga~~v~LigHS~GG~~~ry~~~~~ 148 (336)
T COG1075 107 AVRGEQLFAYVDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVL 148 (336)
T ss_pred cccHHHHHHHHHHHHhhcCCCceEEEeecccchhhHHHHhhc
Confidence 3444555666777776664 5788999999999988555443
No 172
>KOG4627|consensus
Probab=75.50 E-value=4.9 Score=29.00 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=21.2
Q ss_pred CceEEEeechHHHHHHHHHhhhccCc
Q psy2496 72 PFDGILGFSQGAELLGLICCLKSKNC 97 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~~~~~ 97 (102)
....+.|.|-||-+|+..++++..++
T Consensus 136 k~l~~gGHSaGAHLa~qav~R~r~pr 161 (270)
T KOG4627|consen 136 KVLTFGGHSAGAHLAAQAVMRQRSPR 161 (270)
T ss_pred eeEEEcccchHHHHHHHHHHHhcCch
Confidence 45778899999999999988865554
No 173
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=75.22 E-value=4 Score=32.43 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhhhccC
Q psy2496 53 VTGFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
..+.--++++|++.|+.-| .-+-|+|-|-||+-++.|+..-..+
T Consensus 158 l~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~Ak 204 (491)
T COG2272 158 LLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAK 204 (491)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccch
Confidence 3455668999999998865 3677999999999998888764433
No 174
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=75.03 E-value=6.5 Score=29.57 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.2
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
||-|.|=|-||.+|+.|+.-.
T Consensus 44 FDliaGTStGgiiA~~la~~~ 64 (349)
T cd07214 44 FDVIAGTSTGGLITAMLTAPN 64 (349)
T ss_pred CCEEeeCCHHHHHHHHHhcCC
Confidence 899999999999999999753
No 175
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=74.97 E-value=7.2 Score=33.49 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHh---hCCceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPFIEEVIRS---KGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~---~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..+++..+.+.+.+++ .+| ..++|+|.||.+|..++...+
T Consensus 1113 ~~l~~la~~~~~~i~~~~~~~p-~~l~G~S~Gg~vA~e~A~~l~ 1155 (1296)
T PRK10252 1113 TSLDEVCEAHLATLLEQQPHGP-YHLLGYSLGGTLAQGIAARLR 1155 (1296)
T ss_pred CCHHHHHHHHHHHHHhhCCCCC-EEEEEechhhHHHHHHHHHHH
Confidence 4566666666666654 245 459999999999999988653
No 176
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=74.96 E-value=8.5 Score=25.33 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=17.4
Q ss_pred CceEEEeechHHHHHHHHH
Q psy2496 72 PFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~ 90 (102)
.++.|.|-|-||.+++.++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 6899999999999999887
No 177
>PRK10115 protease 2; Provisional
Probab=74.85 E-value=3.6 Score=33.77 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=18.2
Q ss_pred CceEEEeechHHHHHHHHHhhh
Q psy2496 72 PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~ 93 (102)
...+|+|-|-||.|++.++.+.
T Consensus 524 ~rl~i~G~S~GG~l~~~~~~~~ 545 (686)
T PRK10115 524 SLCYGMGGSAGGMLMGVAINQR 545 (686)
T ss_pred HHeEEEEECHHHHHHHHHHhcC
Confidence 3579999999999998877654
No 178
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=74.75 E-value=4.7 Score=28.71 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=27.8
Q ss_pred hHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 52 IVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+..+..+++++|.+.=-.+| .+|++|.|.+|..+..++...
T Consensus 82 e~~D~~d~I~W~~~Qpws~G-~VGm~G~SY~G~~q~~~A~~~ 122 (272)
T PF02129_consen 82 EAQDGYDTIEWIAAQPWSNG-KVGMYGISYGGFTQWAAAARR 122 (272)
T ss_dssp HHHHHHHHHHHHHHCTTEEE-EEEEEEETHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCCC-eEEeeccCHHHHHHHHHHhcC
Confidence 45555566666655311123 589999999999998888744
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=73.99 E-value=7.5 Score=30.78 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=43.9
Q ss_pred CcEEEeccCCeeccCCCCCCCcCCCCCCCCc-cccCCCCCCCChhhHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHH
Q psy2496 8 LAELTYIDAPYVIENPNISSLEDLAPTGEQR-SWFHPLDDRYSENIVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELL 86 (102)
Q Consensus 8 ~~~f~f~daP~~~~~~~~~~~~~~~~~~~~~-~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a 86 (102)
.+++++.|.||....... ..........|. +++... +..+.+..-++.+.++++..|-+.--+|++|+..+.
T Consensus 206 ~fDlIvsNPPYi~~~~~~-~l~~~v~~~EP~~AL~gg~------dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~ 278 (506)
T PRK01544 206 KFDFIVSNPPYISHSEKS-EMAIETINYEPSIALFAEE------DGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVT 278 (506)
T ss_pred CccEEEECCCCCCchhhh-hcCchhhccCcHHHhcCCc------cHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHH
Confidence 478888888886432110 000000112232 354332 124455556667777787788777778999999887
Q ss_pred HHHHh
Q psy2496 87 GLICC 91 (102)
Q Consensus 87 ~~l~~ 91 (102)
..+.-
T Consensus 279 ~~~~~ 283 (506)
T PRK01544 279 QIFLD 283 (506)
T ss_pred HHHHh
Confidence 76643
No 180
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=73.67 E-value=4.3 Score=30.97 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=16.4
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
++++|+|-||+.++..+...
T Consensus 230 i~~~GHSFGGATa~~~l~~d 249 (379)
T PF03403_consen 230 IGLAGHSFGGATALQALRQD 249 (379)
T ss_dssp EEEEEETHHHHHHHHHHHH-
T ss_pred eeeeecCchHHHHHHHHhhc
Confidence 67999999999998777654
No 181
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=73.35 E-value=6.5 Score=29.64 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=18.4
Q ss_pred CceEEEeechHHHHHHHHHh
Q psy2496 72 PFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~ 91 (102)
.||-|.|=|-||.+|+.+++
T Consensus 41 ~FDlIaGTStGgIIAa~la~ 60 (344)
T cd07217 41 YFDFVGGTSTGSIIAACIAL 60 (344)
T ss_pred cccEEEEecHHHHHHHHHHc
Confidence 38999999999999999986
No 182
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=72.88 E-value=9.6 Score=28.48 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=31.5
Q ss_pred hhHhhHHHHHHHHHHHHHh--hCCceEEEeechHHHHHHHHHhhhcc
Q psy2496 51 NIVTGFNESFPFIEEVIRS--KGPFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~--~gp~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
.+.+++.+.++||+..-.. ...-+.+||+|-||=-+..++.....
T Consensus 85 ~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~ 131 (303)
T PF08538_consen 85 RDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNP 131 (303)
T ss_dssp HHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT
T ss_pred hHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCc
Confidence 5678888888888777311 12358899999999999988886543
No 183
>KOG1202|consensus
Probab=72.36 E-value=7.3 Score=34.96 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHh---hCCceEEEeechHHHHHHHHHhhhccC
Q psy2496 54 TGFNESFPFIEEVIRS---KGPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~---~gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
..++....+-.+.|+. .||+- +.|+|-||+++..++.++|..
T Consensus 2162 dSies~A~~yirqirkvQP~GPYr-l~GYSyG~~l~f~ma~~Lqe~ 2206 (2376)
T KOG1202|consen 2162 DSIESLAAYYIRQIRKVQPEGPYR-LAGYSYGACLAFEMASQLQEQ 2206 (2376)
T ss_pred chHHHHHHHHHHHHHhcCCCCCee-eeccchhHHHHHHHHHHHHhh
Confidence 4555555555555554 47754 999999999999998876654
No 184
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=71.98 E-value=14 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=20.7
Q ss_pred eEEEeechHHHHHHHHHhhhccCcc
Q psy2496 74 DGILGFSQGAELLGLICCLKSKNCK 98 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~~~~~~ 98 (102)
+-++|||-||.+....+..+.+.+.
T Consensus 222 VtLvG~SLGarvI~~cL~~L~~~~~ 246 (345)
T PF05277_consen 222 VTLVGHSLGARVIYYCLLELAERKA 246 (345)
T ss_pred eEEEeecccHHHHHHHHHHHHhccc
Confidence 7799999999999888887665543
No 185
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=71.42 E-value=7.3 Score=30.05 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=22.7
Q ss_pred HHHHHHhhCC-----ceEEEeechHHHHHHHHHhh
Q psy2496 63 IEEVIRSKGP-----FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 63 l~~~i~~~gp-----~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.+.|++| ++.|.|=|-||.+|+.++.-
T Consensus 30 Vl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG 64 (382)
T cd07219 30 VVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCG 64 (382)
T ss_pred HHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhC
Confidence 3444445664 68899999999999988764
No 186
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=71.41 E-value=7.4 Score=28.02 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=25.0
Q ss_pred HHHHHHHhhCC-----ceEEEeechHHHHHHHHHhhhc
Q psy2496 62 FIEEVIRSKGP-----FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 62 ~l~~~i~~~gp-----~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-|.+.+.|+++ ++.|.|=|-||.+|+.++.-+.
T Consensus 21 GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 21 GVASCLLEHAPFLVANARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred HHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCC
Confidence 34555556664 5889999999999999887543
No 187
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=70.39 E-value=7.9 Score=25.80 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.8
Q ss_pred hHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 52 IVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.+.+.++.+.+.|.+.+.++.|+|---||.+.+..+++
T Consensus 11 s~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~ 51 (156)
T PRK09177 11 SWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILAR 51 (156)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHH
Confidence 46788888999999998776679999999999966655554
No 188
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=70.35 E-value=9.3 Score=27.92 Aligned_cols=19 Identities=47% Similarity=0.462 Sum_probs=17.8
Q ss_pred ceEEEeechHHHHHHHHHh
Q psy2496 73 FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~ 91 (102)
||-|.|=|-||.+|+.+++
T Consensus 42 fDli~GTStGgiiA~~la~ 60 (308)
T cd07211 42 FDYICGVSTGAILAFLLGL 60 (308)
T ss_pred cCEEEecChhHHHHHHHhc
Confidence 8999999999999999876
No 189
>KOG4409|consensus
Probab=70.04 E-value=11 Score=28.80 Aligned_cols=37 Identities=22% Similarity=0.087 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 58 ESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 58 ~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.-++.|++.-.+.+ .--.|+|+|-||-+|+.+++...
T Consensus 145 ~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyP 182 (365)
T KOG4409|consen 145 EFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYP 182 (365)
T ss_pred HHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhCh
Confidence 44455555555544 45669999999999999999764
No 190
>COG4099 Predicted peptidase [General function prediction only]
Probab=69.55 E-value=8.2 Score=29.34 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHhhC----CceEEEeechHHHHHHHHHhh
Q psy2496 55 GFNESFPFIEEVIRSKG----PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g----p~dgilGFSQGa~~a~~l~~~ 92 (102)
-..+.++.+.+.+.++- ..+-|+|+|.||.++..++..
T Consensus 248 ~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~k 289 (387)
T COG4099 248 YLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEK 289 (387)
T ss_pred hHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHh
Confidence 34445555565665542 356799999999988776654
No 191
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=69.37 E-value=8.1 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.+.+.| ..+.|.|-|-||.+|+.++..
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~ 131 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVH 131 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcC
Confidence 344444555 567899999999999999883
No 192
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=69.33 E-value=10 Score=29.09 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++.++.-+..++..| ..-+|+|=|.||+.|+..++...
T Consensus 128 ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yP 169 (368)
T COG2021 128 TIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYP 169 (368)
T ss_pred cHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhCh
Confidence 34444444455555555 46779999999999999988653
No 193
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=68.89 E-value=9.4 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHhhC---CceEEEeechHHHHHHHHHhhhc
Q psy2496 63 IEEVIRSKG---PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 63 l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
|.+.+.|+| .++-|.|=|.||.+|+.+++-..
T Consensus 18 Vl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 18 VAVCLKKYAPHLLLNKISGASAGALAACCLLCDLP 52 (245)
T ss_pred HHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCc
Confidence 455556665 36789999999999999987543
No 194
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=67.59 E-value=16 Score=27.97 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=30.2
Q ss_pred hHhhHHHHHHHHHHHHHh--hCC---ceEEEeechHHHHHHHHHhhh
Q psy2496 52 IVTGFNESFPFIEEVIRS--KGP---FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~--~gp---~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+++-++.+.+.+++.+ +|| -+.+-|.|-||++++..+..+
T Consensus 190 s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 190 SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 357777777777888865 353 455669999999999765544
No 195
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=67.22 E-value=11 Score=29.09 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=22.9
Q ss_pred HHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 62 FIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 62 ~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
.++.+.++.-.++.|.|=|-||.+|+.++..
T Consensus 85 VlkaL~e~gllp~iI~GtSAGAivaalla~~ 115 (407)
T cd07232 85 VVKALLDADLLPNVISGTSGGSLVAALLCTR 115 (407)
T ss_pred HHHHHHhCCCCCCEEEEECHHHHHHHHHHcC
Confidence 3344443333678999999999999999884
No 196
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=66.90 E-value=17 Score=29.91 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHH----hh-CCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIR----SK-GPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~----~~-gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++-...|++.|+ .+ |..+.|+|+|.|+.++...+...
T Consensus 193 d~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv 234 (642)
T PLN02517 193 DQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWV 234 (642)
T ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhc
Confidence 344444555554 24 56789999999999998877643
No 197
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=66.60 E-value=14 Score=27.57 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=22.5
Q ss_pred HHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 63 IEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 63 l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.+.+..-.++.|.|-|-||.+|+.++...
T Consensus 88 l~aL~e~~l~~~~i~GtSaGAi~aa~~~~~~ 118 (298)
T cd07206 88 VKALWEQDLLPRVISGSSAGAIVAALLGTHT 118 (298)
T ss_pred HHHHHHcCCCCCEEEEEcHHHHHHHHHHcCC
Confidence 3333333335688999999999999998753
No 198
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=66.56 E-value=14 Score=27.56 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhh
Q psy2496 56 FNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~ 93 (102)
-.+-..++.+++++.+ ..+.++|.|-||.-|+.++..+
T Consensus 86 n~er~~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~ 125 (297)
T PF06342_consen 86 NEERQNFVNALLDELGIKGKLIFLGHSRGCENALQLAVTH 125 (297)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcC
Confidence 3445678888887753 4677999999999999998866
No 199
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=66.36 E-value=16 Score=27.03 Aligned_cols=46 Identities=11% Similarity=-0.047 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHhh--CCceEEEeechHHHHHHHHHhhhccCccC
Q psy2496 54 TGFNESFPFIEEVIRSK--GPFDGILGFSQGAELLGLICCLKSKNCKY 99 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~--gp~dgilGFSQGa~~a~~l~~~~~~~~~~ 99 (102)
......+..+..+++++ -|....+|+|.||.-.+.++..-...+.+
T Consensus 116 ~~~s~wlk~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~ 163 (288)
T COG4814 116 LDQSKWLKKAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSL 163 (288)
T ss_pred hhHHHHHHHHHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCC
Confidence 33445555566666654 47778999999999999998876655543
No 200
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=64.96 E-value=18 Score=21.69 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=27.0
Q ss_pred HhhHHHHHHHHHHHHHh----hCC-ceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRS----KGP-FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~----~gp-~dgilGFSQGa~~a~~l~~~~ 93 (102)
..+.++.++.-.++++. +|| .+-|+|=|-|=.+|+.+++.-
T Consensus 16 P~GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 16 PVGCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 45555555555566655 454 455889999999998888763
No 201
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.86 E-value=24 Score=27.26 Aligned_cols=41 Identities=12% Similarity=-0.082 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHhhC--CceEEEeechHHHHHHHHHhhhc
Q psy2496 54 TGFNESFPFIEEVIRSKG--PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..-..+++.+..+|.++. +-+.|+++|+|.=++...+.++.
T Consensus 171 ~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLa 213 (377)
T COG4782 171 NYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLA 213 (377)
T ss_pred hhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHh
Confidence 344455666666666665 45779999999999888776653
No 202
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=64.78 E-value=14 Score=26.19 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=18.8
Q ss_pred ceEEEeechHHHHHHHHHhh
Q psy2496 73 FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~ 92 (102)
||.|.|=|-||.+|+.++..
T Consensus 35 fd~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 35 FDLIAGTSTGGIIALGLALG 54 (258)
T ss_pred cceeeeccHHHHHHHHHhcC
Confidence 89999999999999999876
No 203
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=64.28 E-value=11 Score=27.64 Aligned_cols=19 Identities=32% Similarity=0.287 Sum_probs=17.4
Q ss_pred ceEEEeechHHHHHHHHHh
Q psy2496 73 FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~ 91 (102)
||-|.|=|-||.+|+.|+.
T Consensus 43 fDli~GTStGgiiA~~l~~ 61 (309)
T cd07216 43 FDLIGGTSTGGLIAIMLGR 61 (309)
T ss_pred cCeeeeccHHHHHHHHhcc
Confidence 8999999999999998864
No 204
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=64.06 E-value=15 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
|.+.+.|+| .++.|.|=|-||.+|+.++..
T Consensus 91 VLkaL~E~gl~p~vIsGTSaGAivAal~as~ 121 (421)
T cd07230 91 VLKALFEANLLPRIISGSSAGSIVAAILCTH 121 (421)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcC
Confidence 334444443 568999999999999998874
No 205
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=63.95 E-value=6.8 Score=29.28 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.9
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-..++|||-||++.-.++....
T Consensus 194 ~~~LiGFSKGcvVLNqll~El~ 215 (303)
T PF10561_consen 194 PLTLIGFSKGCVVLNQLLYELH 215 (303)
T ss_pred ceEEEEecCcchHHHHHHHHHH
Confidence 3559999999999988887654
No 206
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=63.87 E-value=12 Score=31.29 Aligned_cols=24 Identities=29% Similarity=0.160 Sum_probs=20.8
Q ss_pred HhhCCceEEEeechHHHHHHHHHh
Q psy2496 68 RSKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 68 ~~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
+..-||+.|.|=|-||++++.++.
T Consensus 62 ~~~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 62 RLRVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred ccCCCCceEEeeCHHHHHHHHHHc
Confidence 334599999999999999999987
No 207
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=62.81 E-value=15 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=24.5
Q ss_pred HHHHHHhhC--C-ceEEEeechHHHHHHHHHhhhc
Q psy2496 63 IEEVIRSKG--P-FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 63 l~~~i~~~g--p-~dgilGFSQGa~~a~~l~~~~~ 94 (102)
|.+.+.|+| | ++.|.|=|-||.+|+.++..+.
T Consensus 17 Vl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 17 VLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 444555554 2 7899999999999999998654
No 208
>KOG1515|consensus
Probab=62.52 E-value=19 Score=27.26 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHHHH--HHhh--CCceEEEeechHHHHHHHHHhhhcc
Q psy2496 53 VTGFNESFPFIEEV--IRSK--GPFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 53 ~~~~~~s~~~l~~~--i~~~--gp~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
+++.-+|+.++.+. ++.. -..+.|+|=|-||.+|..++++...
T Consensus 143 y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~ 189 (336)
T KOG1515|consen 143 YDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAAD 189 (336)
T ss_pred chHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhh
Confidence 45555666677663 3332 1368899999999999999987654
No 209
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=62.03 E-value=14 Score=30.89 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=28.9
Q ss_pred hhHhhHHHHHHHHHHH----HH--------h---hCCceEEEeechHHHHHHHHHhhh
Q psy2496 51 NIVTGFNESFPFIEEV----IR--------S---KGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~----i~--------~---~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+.++..++++++... .+ . +| -+|++|.|-||.++..++...
T Consensus 303 ~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnG-kVGm~G~SY~G~~~~~aAa~~ 359 (767)
T PRK05371 303 QEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNG-KVAMTGKSYLGTLPNAVATTG 359 (767)
T ss_pred HHHHHHHHHHHHHhhCCccccccccccccccCCCCC-eeEEEEEcHHHHHHHHHHhhC
Confidence 3455666677777642 11 0 23 699999999999999887754
No 210
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=62.01 E-value=14 Score=22.99 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.2
Q ss_pred hhHhhHHHHHHHHHHHHHhhCC--ceEEEeechHHHHHHHHHhhhc
Q psy2496 51 NIVTGFNESFPFIEEVIRSKGP--FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~~gp--~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.....++.+.+.|.+.+++.++ +....|-|-.+++++.+++...
T Consensus 54 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 99 (133)
T PF00782_consen 54 PILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN 99 (133)
T ss_dssp HGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence 4567788888888888776665 3345699999999999887643
No 211
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=61.10 E-value=16 Score=25.93 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=23.8
Q ss_pred HHHHHHhhCC-----ceEEEeechHHHHHHHHHhhhc
Q psy2496 63 IEEVIRSKGP-----FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 63 l~~~i~~~gp-----~dgilGFSQGa~~a~~l~~~~~ 94 (102)
|.+.+.|+|+ .+.|.|=|-||.+|+.++.-..
T Consensus 17 Vl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 17 VASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred HHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCC
Confidence 4455556653 3589999999999999988543
No 212
>COG0627 Predicted esterase [General function prediction only]
Probab=60.25 E-value=12 Score=28.09 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=18.9
Q ss_pred ceEEEeechHHHHHHHHHhhhc
Q psy2496 73 FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~ 94 (102)
-.+|.|+|+||.=|+.+++.+.
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~p 174 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKHP 174 (316)
T ss_pred CceeEEEeccchhhhhhhhhCc
Confidence 3569999999999999998874
No 213
>PF12664 DUF3789: Protein of unknown function (DUF3789); InterPro: IPR024522 This family of functionally uncharacterised bacterial proteins are approximately 40 amino acids in length. They contain two completely conserved residues (V and C) that may be functionally important.
Probab=59.92 E-value=1.3 Score=22.43 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=17.3
Q ss_pred EEeechHHHHHHHHHhhhccCc
Q psy2496 76 ILGFSQGAELLGLICCLKSKNC 97 (102)
Q Consensus 76 ilGFSQGa~~a~~l~~~~~~~~ 97 (102)
++|||-|+.+...+.++.|.++
T Consensus 6 ~l~~~~G~~~GVvlMCllq~gk 27 (34)
T PF12664_consen 6 ILGFSLGGMIGVVLMCLLQIGK 27 (34)
T ss_pred HHHHHccchHhHHHHHHHHhhH
Confidence 5789999999888877776553
No 214
>KOG3975|consensus
Probab=59.67 E-value=19 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=31.9
Q ss_pred hHhhHHHHHHHHHHHHHhhCC---ceEEEeechHHHHHHHHHhh
Q psy2496 52 IVTGFNESFPFIEEVIRSKGP---FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp---~dgilGFSQGa~~a~~l~~~ 92 (102)
+.-++++-+++=.++|++.-| ...++|.|=||-|.+.++..
T Consensus 87 eifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 87 EIFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred cccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhh
Confidence 455677777777888887644 46699999999999988874
No 215
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=59.35 E-value=19 Score=26.72 Aligned_cols=19 Identities=42% Similarity=0.600 Sum_probs=17.2
Q ss_pred ceEEEeechHHHHHHHHHh
Q psy2496 73 FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~ 91 (102)
||-|.|=|-||.+|+.++.
T Consensus 41 fDli~GTStGgiia~~l~~ 59 (329)
T cd07215 41 FDLVAGTSTGGILTCLYLC 59 (329)
T ss_pred cCeeeccCHHHHHHHHHhC
Confidence 8999999999999998764
No 216
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=59.22 E-value=11 Score=28.93 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.6
Q ss_pred ceEEEeechHHHHHHHHHh
Q psy2496 73 FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~ 91 (102)
-+||+|||-||--+..++-
T Consensus 160 ~Vgv~GhS~GG~T~m~laG 178 (365)
T COG4188 160 RVGVLGHSFGGYTAMELAG 178 (365)
T ss_pred ceEEEecccccHHHHHhcc
Confidence 5889999999987776653
No 217
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=58.42 E-value=20 Score=27.55 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=17.7
Q ss_pred CCceEEEeechHHHHHHHHHhhhc
Q psy2496 71 GPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 71 gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
|.-+-..|||-||-.|=-++.+.+
T Consensus 121 GD~Iy~FGFSRGAf~aRVlagmir 144 (423)
T COG3673 121 GDEIYAFGFSRGAFSARVLAGMIR 144 (423)
T ss_pred CCeEEEeeccchhHHHHHHHHHHH
Confidence 556778899999988766665543
No 218
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=58.04 E-value=12 Score=30.88 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=34.3
Q ss_pred CCCCCccccCCCCCCCChhhHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 33 PTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 33 ~~~~~~~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.-.+.||......-..++..++-++.++|.+.=-....-.+++|=|-||++...++-+.
T Consensus 488 GgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~ 548 (682)
T COG1770 488 GGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMA 548 (682)
T ss_pred ccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhC
Confidence 4456677887654210113345555444444332111123577999999999887776553
No 219
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=57.55 E-value=34 Score=24.68 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=26.5
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHH
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~ 90 (102)
...++.-++...++++..|-+..-+|.+|+..+...+.
T Consensus 220 l~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 220 LNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR 257 (284)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence 34455556666667766676766789999998877554
No 220
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=57.36 E-value=15 Score=23.52 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=19.9
Q ss_pred CCceEEEeechHHHHHHHHHhhhccC
Q psy2496 71 GPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 71 gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
-.+|.|.|=|-||.+|+.+++.....
T Consensus 26 ~~~d~i~GtS~Gal~a~~~~~~~~~~ 51 (204)
T PF01734_consen 26 ERFDVISGTSAGALNAALLALGYDPD 51 (204)
T ss_dssp CT-SEEEEECCHHHHHHHHHTC-TCC
T ss_pred CCccEEEEcChhhhhHHHHHhCCCHH
Confidence 36899999999999998888874433
No 221
>KOG2968|consensus
Probab=57.36 E-value=12 Score=32.27 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 62 FIEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 62 ~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
-+...++|+| |+|.|.|=|-||-+.+.++-.
T Consensus 856 Gvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e 887 (1158)
T KOG2968|consen 856 GVLQALEEAGIPVDMVGGTSIGAFIGALYAEE 887 (1158)
T ss_pred HHHHHHHHcCCCeeeeccccHHHhhhhhhhcc
Confidence 3455666666 999999999999999988754
No 222
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=56.08 E-value=50 Score=25.88 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhC----CceEEEeechHHHHHHHHHhhh
Q psy2496 56 FNESFPFIEEVIRSKG----PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~g----p~dgilGFSQGa~~a~~l~~~~ 93 (102)
.++..+.|..++++.. .-..|+|.|-||..+..++...
T Consensus 151 a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i 192 (462)
T PTZ00472 151 SEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRI 192 (462)
T ss_pred HHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHH
Confidence 3444444555544321 2255999999999887777653
No 223
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=55.99 E-value=19 Score=25.68 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHhhC-CceEEEeechHHHHHHHHH
Q psy2496 64 EEVIRSKG-PFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 64 ~~~i~~~g-p~dgilGFSQGa~~a~~l~ 90 (102)
.+.+++.| ..+.++|+|+|-..|+.++
T Consensus 73 ~~~l~~~Gi~p~~~~GhSlGE~aA~~~a 100 (298)
T smart00827 73 ARLWRSWGVRPDAVVGHSLGEIAAAYVA 100 (298)
T ss_pred HHHHHHcCCcccEEEecCHHHHHHHHHh
Confidence 34445555 4589999999987776654
No 224
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=55.84 E-value=30 Score=27.08 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=27.3
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
.+-+++-++.+.++++..|-+.-.+|++|+..+...+..
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 344555566666777777766667899999988776643
No 225
>KOG4231|consensus
Probab=55.65 E-value=8.4 Score=31.29 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhC-C----ceEEEeechHHHHHHHHHhhh
Q psy2496 59 SFPFIEEVIRSKG-P----FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 59 s~~~l~~~i~~~g-p----~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.|+++.+-.| | ||-|+|-|-||++|..|.+.+
T Consensus 432 ~lqiL~kieklsgKpIheLFD~ICGvSTG~ilA~~Lg~k~ 471 (763)
T KOG4231|consen 432 TLQILKKIEKLSGKPIHELFDLICGVSTGGILAIALGVKL 471 (763)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHhccCchHHHHHHHHhcC
Confidence 4555666555444 3 899999999999999998743
No 226
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=54.69 E-value=31 Score=25.76 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=29.7
Q ss_pred hHhhHHHHHHHHHHHHHhh--------CCceEEEeechHHHHHHHHHhhhc
Q psy2496 52 IVTGFNESFPFIEEVIRSK--------GPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~--------gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+.+...+..+++.+-++.. ....+++|+|-||..|..+++...
T Consensus 92 Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a 142 (307)
T PF07224_consen 92 EIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYA 142 (307)
T ss_pred HHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhccc
Confidence 3455555666666665542 235679999999999999988553
No 227
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=54.65 E-value=36 Score=23.65 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHhh-CCceEEEeechHHHHHHHHHhhhcc
Q psy2496 54 TGFNESFPFIEEVIRSK-GPFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~-gp~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
..+++=++.|.+.+... +| ..+++.|-||..++.++-+.++
T Consensus 41 P~~~dWi~~l~~~v~a~~~~-~vlVAHSLGc~~v~h~~~~~~~ 82 (181)
T COG3545 41 PVLDDWIARLEKEVNAAEGP-VVLVAHSLGCATVAHWAEHIQR 82 (181)
T ss_pred CCHHHHHHHHHHHHhccCCC-eEEEEecccHHHHHHHHHhhhh
Confidence 44444445555555443 44 7799999999999999887654
No 228
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=54.58 E-value=27 Score=26.35 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=21.5
Q ss_pred HHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 64 EEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 64 ~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
.+.+.++| .++.|.|-|-||.+|+.++..
T Consensus 87 lkaL~e~gl~p~~i~GsSaGAivaa~~~~~ 116 (323)
T cd07231 87 VRTLVEHQLLPRVIAGSSVGSIVCAIIATR 116 (323)
T ss_pred HHHHHHcCCCCCEEEEECHHHHHHHHHHcC
Confidence 33344444 567899999999999999874
No 229
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=54.42 E-value=28 Score=24.83 Aligned_cols=37 Identities=5% Similarity=-0.122 Sum_probs=25.4
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHH
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLI 89 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l 89 (102)
.+-+++-++....+++..|-+.-+.|-+|+..+...+
T Consensus 192 l~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 192 LDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 3445555566667777778777788999988755544
No 230
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=54.13 E-value=60 Score=26.47 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=32.7
Q ss_pred ccCCCCCCCChhhHhhHHHHHHHHHHHHHhhC---CceEEEeechHHHHHHHHHhhhc
Q psy2496 40 WFHPLDDRYSENIVTGFNESFPFIEEVIRSKG---PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 40 W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~~g---p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
|+..+.+ ..+.+++..+.....+.|.+.. +...|+|=+|||=++++++++..
T Consensus 108 F~p~P~p---gQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~P 162 (581)
T PF11339_consen 108 FFPEPEP---GQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRP 162 (581)
T ss_pred ecCCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCc
Confidence 5655442 1345555555544444443322 35689999999999999998754
No 231
>KOG2385|consensus
Probab=52.90 E-value=37 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=19.5
Q ss_pred ceEEEeechHHHHHHHHHhhhccC
Q psy2496 73 FDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
.+-++|||-||.+....++.+.+.
T Consensus 448 PVTLVGFSLGARvIf~CL~~Lakk 471 (633)
T KOG2385|consen 448 PVTLVGFSLGARVIFECLLELAKK 471 (633)
T ss_pred ceeEeeeccchHHHHHHHHHHhhc
Confidence 377999999999998888766553
No 232
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=51.64 E-value=15 Score=23.98 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=10.8
Q ss_pred eEEEeechHHHHH
Q psy2496 74 DGILGFSQGAELL 86 (102)
Q Consensus 74 dgilGFSQGa~~a 86 (102)
..|+|+|-||++.
T Consensus 70 ~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 70 GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEEETHHHHCT
T ss_pred CEEEEEChHHhhc
Confidence 4588999999874
No 233
>KOG2237|consensus
Probab=50.97 E-value=14 Score=30.53 Aligned_cols=58 Identities=17% Similarity=0.087 Sum_probs=31.5
Q ss_pred CCCccccCCCCCCCChhhHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 35 GEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 35 ~~~~~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
.....|.....-.-..+...++..+.++|.+.==-+..--.+-|+|-||.+++++.-+
T Consensus 512 e~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~ 569 (712)
T KOG2237|consen 512 EYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQ 569 (712)
T ss_pred ccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhcc
Confidence 3445577653211111335556555555543211112357799999999988876543
No 234
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=50.12 E-value=43 Score=28.36 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.3
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
+.++|+|.||.++..++...
T Consensus 557 V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 557 VSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred EEEEecCHHHHHHHHHHHhc
Confidence 56999999999999998753
No 235
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=49.21 E-value=22 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.5
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
-.+|+|.|-||.+++..++..
T Consensus 138 ~~~i~GhSlGGLfvl~aLL~~ 158 (264)
T COG2819 138 RTAIIGHSLGGLFVLFALLTY 158 (264)
T ss_pred cceeeeecchhHHHHHHHhcC
Confidence 488999999999999888765
No 236
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=49.00 E-value=62 Score=22.07 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
...+.+.+.+.++++.+ |.++|++.+.+.++++.=++..
T Consensus 165 ~~~~~a~~~~~~~l~~~-~~~~i~~~~~~~~~g~~~al~~ 203 (257)
T PF13407_consen 165 WDPEDARQAIENLLQAN-PVDAIIACNDGMALGAAQALQQ 203 (257)
T ss_dssp TSHHHHHHHHHHHHHHT-TEEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhcC-CceEEEeCCChHHHHHHHHHHH
Confidence 45566777888888877 6999999999998865555443
No 237
>KOG1551|consensus
Probab=47.78 E-value=15 Score=27.62 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.3
Q ss_pred eEEEeechHHHHHHHHHhhhccC
Q psy2496 74 DGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
-+|+|-|.||-||.....++|++
T Consensus 197 ~~~~g~Smgg~~a~~vgS~~q~P 219 (371)
T KOG1551|consen 197 LNLVGRSMGGDIANQVGSLHQKP 219 (371)
T ss_pred ceeeeeecccHHHHhhcccCCCC
Confidence 46999999999999999999987
No 238
>KOG4667|consensus
Probab=47.75 E-value=33 Score=25.00 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHh-hCCceEEEeechHHHHHHHHHhhhc
Q psy2496 58 ESFPFIEEVIRS-KGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 58 ~s~~~l~~~i~~-~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+-+..|.+++.. +.-.+.|+|.|-|+-++..++....
T Consensus 90 dDL~sV~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~ 127 (269)
T KOG4667|consen 90 DDLHSVIQYFSNSNRVVPVILGHSKGGDVVLLYASKYH 127 (269)
T ss_pred HHHHHHHHHhccCceEEEEEEeecCccHHHHHHHHhhc
Confidence 444445555543 3446789999999999998887654
No 239
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=47.13 E-value=33 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=18.7
Q ss_pred HHHHHhhC-CceEEEeechHHHHHHHHH
Q psy2496 64 EEVIRSKG-PFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 64 ~~~i~~~g-p~dgilGFSQGa~~a~~l~ 90 (102)
.+.+++.| ..+.++|+|+|=..|+.++
T Consensus 67 ~~~l~~~g~~P~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 67 WRALLALLPRPSAVAGYSVGEYAAAVVA 94 (295)
T ss_pred HHHHHhcCCCCcEEeecCHHHHHHHHHh
Confidence 34444444 4689999999987776654
No 240
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=46.73 E-value=48 Score=25.85 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=19.2
Q ss_pred hhCCceEEE--eechHHHHHHHHHhhh
Q psy2496 69 SKGPFDGIL--GFSQGAELLGLICCLK 93 (102)
Q Consensus 69 ~~gp~dgil--GFSQGa~~a~~l~~~~ 93 (102)
++|.++||+ |=|+|..+++.....+
T Consensus 90 ~~g~i~Gvi~~GGs~GT~lat~aMr~L 116 (403)
T PF06792_consen 90 DEGKIDGVIGIGGSGGTALATAAMRAL 116 (403)
T ss_pred hcCCccEEEEecCCccHHHHHHHHHhC
Confidence 457899988 6689999888776543
No 241
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.63 E-value=68 Score=21.75 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.+.+.++++++.+.++|+..|...++.+.-++..
T Consensus 159 ~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~l~~ 195 (266)
T cd06278 159 EGGYEAARRLLASRPRPDAIFCANDLLAIGVMDAARQ 195 (266)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 3445566777766656899999998877665555543
No 242
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=45.71 E-value=34 Score=21.49 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHHhhCCc--eEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPF--DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~--dgilGFSQGa~~a~~l~~~~ 93 (102)
...++++.+.+...+++.+++ .+-.|.|--+++++.+++..
T Consensus 61 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 61 SPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 456667777777776655552 33459999999888777654
No 243
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=45.69 E-value=66 Score=22.11 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.+.+.++++++..+++|++.|-..++.+.-++..
T Consensus 168 ~~~~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~ 204 (273)
T cd01541 168 EKLFEKIKEILKRPERPTAIVCYNDEIALRVIDLLKE 204 (273)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 3455667777766666899999998888766555543
No 244
>KOG4178|consensus
Probab=45.54 E-value=56 Score=24.71 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=31.2
Q ss_pred HhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~~~ 94 (102)
...+..-++.+..+++..| .-..++|++-||.+|-.+++...
T Consensus 93 ~Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~P 135 (322)
T KOG4178|consen 93 EYTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYP 135 (322)
T ss_pred eeeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhCh
Confidence 3455555666667776655 45679999999999999998764
No 245
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=45.27 E-value=65 Score=22.04 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHh----h--CCceEEEeechHHHHHHHHHhh
Q psy2496 56 FNESFPFIEEVIRS----K--GPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 56 ~~~s~~~l~~~i~~----~--gp~dgilGFSQGa~~a~~l~~~ 92 (102)
.++.-..|.++++. + .+-..++|+|-|..++...+..
T Consensus 87 A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~ 129 (177)
T PF06259_consen 87 ARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQ 129 (177)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhh
Confidence 34444555555543 2 2467799999999999887665
No 246
>COG3621 Patatin [General function prediction only]
Probab=45.24 E-value=34 Score=26.28 Aligned_cols=32 Identities=28% Similarity=0.126 Sum_probs=23.8
Q ss_pred HHHHHHHHh-hCC-----ceEEEeechHHHHHHHHHhh
Q psy2496 61 PFIEEVIRS-KGP-----FDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 61 ~~l~~~i~~-~gp-----~dgilGFSQGa~~a~~l~~~ 92 (102)
..+.+.|++ +|+ ||-+-|=|-|+.+++.|++-
T Consensus 25 lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~ 62 (394)
T COG3621 25 LEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALG 62 (394)
T ss_pred HHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcC
Confidence 344555555 553 78899999999999998874
No 247
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=45.10 E-value=67 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeechHH
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQGA 83 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQGa 83 (102)
++.-...|++++++.|---.|+|+|=|-
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGi 29 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGI 29 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence 4556788999998888767799999874
No 248
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=44.89 E-value=32 Score=25.14 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHHHHHhhC-CceEEEeechHHHHHHHHH
Q psy2496 63 IEEVIRSKG-PFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 63 l~~~i~~~g-p~dgilGFSQGa~~a~~l~ 90 (102)
+.+.+++.| ..+.++|+|.|=.-|+..+
T Consensus 74 l~~~l~~~Gi~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 74 LARLLRSWGIKPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHHHHHTTHCESEEEESTTHHHHHHHHT
T ss_pred hhhhhcccccccceeeccchhhHHHHHHC
Confidence 445556666 4689999999977666543
No 249
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.59 E-value=69 Score=21.87 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 58 ESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+.+.+.++++++.+.++|+..|...++.+.-++...
T Consensus 162 ~~~~~~~~~l~~~~~~~aii~~~~~~a~~~~~~l~~~ 198 (265)
T cd06290 162 SGLEAVEELLQRGPDFTAIFAANDQTAYGARLALYRR 198 (265)
T ss_pred HHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHc
Confidence 3455666777655567999999988777665555443
No 250
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=44.19 E-value=44 Score=20.73 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHHhhCCc--eEEEeechHHHHHHHHHhhhc
Q psy2496 53 VTGFNESFPFIEEVIRSKGPF--DGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~--dgilGFSQGa~~a~~l~~~~~ 94 (102)
...++.+++.+.....+.+|+ ....|.|-.++|++.+++...
T Consensus 64 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 64 SKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 345566667776666655562 224599999999887776544
No 251
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.07 E-value=71 Score=21.71 Aligned_cols=37 Identities=5% Similarity=0.004 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+.+.+.++++++..+++|++.|...++++.-++..
T Consensus 163 ~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~ 199 (268)
T cd06289 163 QGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRR 199 (268)
T ss_pred hhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 3445566677766556899999988777665544443
No 252
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=43.42 E-value=75 Score=22.86 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=31.8
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
..+.+++.+.+.+++..++..++|++.+=+.++.+..++.
T Consensus 200 ~~~~~~a~~~~~~~L~~~pdi~~i~~~~d~~a~ga~~A~~ 239 (322)
T COG1879 200 DWDRDKALEVMEDLLAANPDIDGIYAANDGMALGAIQALK 239 (322)
T ss_pred cccHHHHHHHHHHHHHhCCCceEEEECCchhHHHHHHHHH
Confidence 3556778889999999998899999888887777765555
No 253
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=43.29 E-value=62 Score=24.04 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=25.5
Q ss_pred HhhHHHHHHHHHHHHHhh----CCceEEEeechHHHHHHHHHhh
Q psy2496 53 VTGFNESFPFIEEVIRSK----GPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~----gp~dgilGFSQGa~~a~~l~~~ 92 (102)
.+..++-.+.|..++... ..-..|.|=|-||..+-.++..
T Consensus 113 ~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~ 156 (415)
T PF00450_consen 113 DQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASY 156 (415)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHh
Confidence 334444455556666553 2135699999999988777664
No 254
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=42.99 E-value=59 Score=24.33 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhcc
Q psy2496 55 GFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSK 95 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~~ 95 (102)
.-++|++..+++.+++|- ++|=|-||++++.+=+..+.
T Consensus 243 ~d~~A~~~~r~La~~eGi---lvG~SsGA~~~aa~~~a~~~ 280 (300)
T COG0031 243 SDEEAIATARRLAREEGL---LVGISSGAALAAALKLAKEL 280 (300)
T ss_pred CHHHHHHHHHHHHHHhCe---eecccHHHHHHHHHHHHHhc
Confidence 446788999999998874 66889999999887766554
No 255
>KOG4540|consensus
Probab=42.49 E-value=47 Score=25.29 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=17.0
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
-..+-|.|-||++|+.|.+.-
T Consensus 277 ~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 277 RIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred eEEEeccccchHHHHHhcccc
Confidence 355779999999999987754
No 256
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=42.49 E-value=47 Score=25.29 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=17.0
Q ss_pred ceEEEeechHHHHHHHHHhhh
Q psy2496 73 FDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 73 ~dgilGFSQGa~~a~~l~~~~ 93 (102)
-..+-|.|-||++|+.|.+.-
T Consensus 277 ~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 277 RIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred eEEEeccccchHHHHHhcccc
Confidence 355779999999999987754
No 257
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=41.68 E-value=34 Score=25.61 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhCC--ceEEEeechHH
Q psy2496 56 FNESFPFIEEVIRSKGP--FDGILGFSQGA 83 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp--~dgilGFSQGa 83 (102)
-++-++.+.+.+++.+. +|.|+|+|=|-
T Consensus 41 ~~~~l~~l~~~~k~~~~~~yD~iV~lSGGk 70 (343)
T TIGR03573 41 REKELEELVDKIKKKGGGRYDCIIGVSGGK 70 (343)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECCCCH
Confidence 34445555555554433 99999999773
No 258
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=41.13 E-value=1e+02 Score=20.13 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=21.3
Q ss_pred HhhHHHHHHHHHHHHHhh-CCceEEEee
Q psy2496 53 VTGFNESFPFIEEVIRSK-GPFDGILGF 79 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~-gp~dgilGF 79 (102)
.....+++..|.+...++ |.++-|+||
T Consensus 63 ~~~~~evlaele~Cr~dhp~eYIRliGf 90 (127)
T COG4451 63 AKTAGEVLAELEACRADHPGEYIRLIGF 90 (127)
T ss_pred ccchHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 355667788888888876 679999998
No 259
>PRK02399 hypothetical protein; Provisional
Probab=40.97 E-value=74 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=18.8
Q ss_pred hhCCceEEE--eechHHHHHHHHHhhh
Q psy2496 69 SKGPFDGIL--GFSQGAELLGLICCLK 93 (102)
Q Consensus 69 ~~gp~dgil--GFSQGa~~a~~l~~~~ 93 (102)
++|.++||+ |=|+|..+++.....+
T Consensus 92 ~~g~i~gviglGGs~GT~lat~aMr~L 118 (406)
T PRK02399 92 ERGDVAGVIGLGGSGGTALATPAMRAL 118 (406)
T ss_pred hcCCccEEEEecCcchHHHHHHHHHhC
Confidence 467899988 5688888888776544
No 260
>KOG2476|consensus
Probab=40.37 E-value=38 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeech
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQ 81 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQ 81 (102)
...+.+.+++|.++=+.+||||-++.+++
T Consensus 15 ~Gr~~eli~rI~~v~Kk~GpFd~liCvGn 43 (528)
T KOG2476|consen 15 EGRFDELIKRIQKVNKKSGPFDLLICVGN 43 (528)
T ss_pred cccHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 35678889999999899999999887654
No 261
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=40.29 E-value=23 Score=23.59 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=31.2
Q ss_pred HHHHHHHHhhC--CceEEEeechHHHHHHHHHhhhccCccCcC
Q psy2496 61 PFIEEVIRSKG--PFDGILGFSQGAELLGLICCLKSKNCKYLK 101 (102)
Q Consensus 61 ~~l~~~i~~~g--p~dgilGFSQGa~~a~~l~~~~~~~~~~~~ 101 (102)
+.+.+.|++-| .++.|+.-+.....++.-+++..++..||.
T Consensus 80 ~ll~~vIeeVG~~nVvqVVTDn~~~~~~a~~~L~~k~p~ifw~ 122 (153)
T PF04937_consen 80 ELLDEVIEEVGEENVVQVVTDNASNMKKAGKLLMEKYPHIFWT 122 (153)
T ss_pred HHHHHHHHHhhhhhhhHHhccCchhHHHHHHHHHhcCCCEEEe
Confidence 44455555544 377789999999999988888888888885
No 262
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=39.40 E-value=1e+02 Score=21.30 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHh
Q psy2496 55 GFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
+.+.+.+.+.++++++.++++|++.++.+.-+...+.
T Consensus 167 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~a~~~~~~l~ 203 (268)
T cd06306 167 GKEVQRKLVEEALEAHPDIDYIVGSAVAAEAAVGILR 203 (268)
T ss_pred cHHHHHHHHHHHHHhCCCcCEEeecchhhhHHHHHHH
Confidence 3455667777888776668999886655554444333
No 263
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.62 E-value=1.2e+02 Score=20.55 Aligned_cols=37 Identities=5% Similarity=0.052 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.+.+.++++....+++|++.|-..++.+.-++..
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~ 198 (269)
T cd06288 162 DDGYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALLE 198 (269)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 4455666777766555899999998877766555543
No 264
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=38.54 E-value=49 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=17.7
Q ss_pred HHHHhhC--CceEEEeechHHHHHHHHH
Q psy2496 65 EVIRSKG--PFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 65 ~~i~~~g--p~dgilGFSQGa~~a~~l~ 90 (102)
+.+++.| ..+.|+|+|+|=..|+.++
T Consensus 74 ~~l~~~g~i~p~~v~GhS~GE~aAa~~a 101 (290)
T TIGR00128 74 LKLKEQGGLKPDFAAGHSLGEYSALVAA 101 (290)
T ss_pred HHHHHcCCCCCCEEeecCHHHHHHHHHh
Confidence 3344444 3588999999987666554
No 265
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=37.81 E-value=1.1e+02 Score=21.36 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=26.5
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHH
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~ 90 (102)
.+.++..++.+.++++..|-+..-+|++|+..+...+.
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~ 251 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLA 251 (275)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHH
Confidence 44556666666777777777666779999987665443
No 266
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=37.65 E-value=1.2e+02 Score=20.61 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+.+.+.++++.+...++|++.|-..++.+.-++..
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~ 198 (268)
T cd01575 162 ALGRELLAELLARWPDLDAVFCSNDDLALGALFECQR 198 (268)
T ss_pred HHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHH
Confidence 4455667777766655799999998887766555543
No 267
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=37.11 E-value=62 Score=22.55 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=33.4
Q ss_pred hHhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 52 IVTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
+++.+.+.+..|.+.|.+.| ..|.|++=.=||.+.+.++..
T Consensus 8 Sw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd 49 (192)
T COG2236 8 SWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSD 49 (192)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHH
Confidence 36778888889999998654 569999999999998888764
No 268
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=36.84 E-value=48 Score=23.15 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=19.9
Q ss_pred CCceEEEeechHHHHHHHHHhhhccC
Q psy2496 71 GPFDGILGFSQGAELLGLICCLKSKN 96 (102)
Q Consensus 71 gp~dgilGFSQGa~~a~~l~~~~~~~ 96 (102)
|| -.|.|-|.||-|+++++-..+.+
T Consensus 89 gp-Li~GGkSmGGR~aSmvade~~A~ 113 (213)
T COG3571 89 GP-LIIGGKSMGGRVASMVADELQAP 113 (213)
T ss_pred Cc-eeeccccccchHHHHHHHhhcCC
Confidence 45 45889999999999998776543
No 269
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=36.39 E-value=44 Score=23.86 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=15.8
Q ss_pred HHHHHHhhCCceEEEeechHHHHHHHH
Q psy2496 63 IEEVIRSKGPFDGILGFSQGAELLGLI 89 (102)
Q Consensus 63 l~~~i~~~gp~dgilGFSQGa~~a~~l 89 (102)
|++.+++ | ..++|.|-||+++..-
T Consensus 106 l~~~~~~-G--~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 106 IREAVKN-G--TPYIGWSAGANVAGPT 129 (233)
T ss_pred HHHHHHC-C--CEEEEECHHHHhhhcc
Confidence 4444433 3 3489999999886543
No 270
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.19 E-value=1.3e+02 Score=20.62 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.+.+.++++.+.+.++|++.|--.++.+.-++..
T Consensus 156 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 192 (265)
T cd01543 156 EEEQEELAQWLQSLPKPVGIFACTDARARQLLEACRR 192 (265)
T ss_pred HHHHHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHH
Confidence 3455667777776667899999987777665555543
No 271
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=35.94 E-value=1.3e+02 Score=20.34 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+++.+.+.++++++.+.++|++.|-..++.+.-++..
T Consensus 160 ~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~ 197 (267)
T cd06284 160 LESGYAAARRLLALPDRPTAIFCFSDEMAIGAISALKE 197 (267)
T ss_pred hHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH
Confidence 44556667777766656799999887666555544443
No 272
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=35.75 E-value=99 Score=21.77 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCceEEEeechHHHHHHHHHhhhccCccC
Q psy2496 61 PFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSKNCKY 99 (102)
Q Consensus 61 ~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~~~~~~ 99 (102)
-.|-+.++-..|-+.+++--|+|.|++.|++--.+++||
T Consensus 75 ~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~ 113 (200)
T COG0740 75 LAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRF 113 (200)
T ss_pred HHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCce
Confidence 346666767777788899999999999999887777665
No 273
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=35.64 E-value=24 Score=26.36 Aligned_cols=20 Identities=15% Similarity=-0.090 Sum_probs=17.1
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
-++.|-|+||.+|+..++++
T Consensus 179 r~L~G~SlGG~vsL~agl~~ 198 (299)
T COG2382 179 RVLAGDSLGGLVSLYAGLRH 198 (299)
T ss_pred cEEeccccccHHHHHHHhcC
Confidence 45889999999999888865
No 274
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=35.31 E-value=24 Score=24.55 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=11.0
Q ss_pred cEEEeccCCeec
Q psy2496 9 AELTYIDAPYVI 20 (102)
Q Consensus 9 ~~f~f~daP~~~ 20 (102)
+++||+|.||.-
T Consensus 115 FDlVflDPPy~~ 126 (187)
T COG0742 115 FDLVFLDPPYAK 126 (187)
T ss_pred ccEEEeCCCCcc
Confidence 999999999983
No 275
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=35.08 E-value=64 Score=19.33 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEEeec
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGILGFS 80 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgilGFS 80 (102)
+.+++-++.+++.+++-+ -+||+||-
T Consensus 31 envd~li~~lee~vk~k~-~~giigFk 56 (81)
T PF11524_consen 31 ENVDELIKKLEEKVKAKG-GMGIIGFK 56 (81)
T ss_dssp SSHHHHHHHHHHHHHHTT---EEES--
T ss_pred hhHHHHHHHHHHHHHhCC-CceEEEEE
Confidence 467777788888887654 37899983
No 276
>KOG1283|consensus
Probab=34.09 E-value=96 Score=23.98 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=28.1
Q ss_pred HhhHHHHHHHHHHHHHhhCCc----eEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSKGPF----DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~----dgilGFSQGa~~a~~l~~~~ 93 (102)
.+...+-++.++.+...+..| -.|+.=|-||.||.-+++..
T Consensus 99 ~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l 143 (414)
T KOG1283|consen 99 KQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALEL 143 (414)
T ss_pred HHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhH
Confidence 344445566677777655322 34889999999999888754
No 277
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=34.06 E-value=1.1e+02 Score=21.09 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeechHHHHHH
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQGAELLG 87 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~ 87 (102)
.+++.+.+.++++.+..+++|++.|--.++.+
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~ 194 (271)
T cd06314 163 FAKAKSNAEDALNAHPDLKCMFGLYAYNGPAI 194 (271)
T ss_pred HHHHHHHHHHHHHhCCCccEEEecCCccHHHH
Confidence 34556677777776666789887765444433
No 278
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=33.58 E-value=1.1e+02 Score=18.47 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=28.9
Q ss_pred hHhhHHHHHHHHHHHHHhhCC-ceEEEeechHHHHHHHHHh
Q psy2496 52 IVTGFNESFPFIEEVIRSKGP-FDGILGFSQGAELLGLICC 91 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp-~dgilGFSQGa~~a~~l~~ 91 (102)
+++.+.+..+.+.+.+.+.++ ++.|+|---||...+..++
T Consensus 6 ~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la 46 (125)
T PF00156_consen 6 SPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALA 46 (125)
T ss_dssp BHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHH
Confidence 367788888999999988753 6668887777765554444
No 279
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=32.07 E-value=1.6e+02 Score=20.00 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.+.+.++++++...++|+..+-..++.+.-++..
T Consensus 164 ~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~~~~~ 200 (270)
T cd01545 164 ESGLEAAEALLALPDRPTAIFASNDDMAAGVLAVAHR 200 (270)
T ss_pred hhHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 3344555666655445789998887666555444443
No 280
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.83 E-value=1.7e+02 Score=20.71 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
.+++.+.+.++++.+.++++|++++-..++.+.-++.
T Consensus 186 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 222 (305)
T cd06324 186 EDEAYEQAENLLKRYPDVRLIWAANDQMAFGALRAAK 222 (305)
T ss_pred HHHHHHHHHHHHHHCCCccEEEECCchHHHHHHHHHH
Confidence 3445566677776655689998877555555544444
No 281
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=31.50 E-value=1.6e+02 Score=20.30 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHhhC----CceEEEeechHHHHHHHHHh
Q psy2496 54 TGFNESFPFIEEVIRSKG----PFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~g----p~dgilGFSQGa~~a~~l~~ 91 (102)
..+..+++.|.+.+.+.. +-..+-.||-||.+.+.-++
T Consensus 45 ~~~~~~~~~l~~~l~~~~~~~~~~il~H~FSnGG~~~~~~l~ 86 (240)
T PF05705_consen 45 KRLAPAADKLLELLSDSQSASPPPILFHSFSNGGSFLYSQLL 86 (240)
T ss_pred cchHHHHHHHHHHhhhhccCCCCCEEEEEEECchHHHHHHHH
Confidence 456666777777776532 24667799997776655554
No 282
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=31.45 E-value=1e+02 Score=18.27 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEEeec
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGILGFS 80 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgilGFS 80 (102)
++.+++++.+.+.-++.|- ++|+|+.
T Consensus 25 ~d~d~Al~eM~e~A~~lGA-nAVVGvr 50 (74)
T TIGR03884 25 DNVDEIVENLREKVKAKGG-MGLIAFR 50 (74)
T ss_pred CCHHHHHHHHHHHHHHcCC-CEEEEEE
Confidence 4678888888888888764 7788764
No 283
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.21 E-value=1.6e+02 Score=20.08 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+++.+.+.++++.....++|++.|-..++.+.-++..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 196 (265)
T cd06285 159 IEGGEAAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARD 196 (265)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 34445566666655545799999998877765555543
No 284
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=30.88 E-value=1.6e+02 Score=21.13 Aligned_cols=37 Identities=3% Similarity=0.056 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.+.+.++++.+...++|+..|-..++++.-++..
T Consensus 224 ~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~ 260 (341)
T PRK10703 224 ESGYEAMQQILSQKHRPTAVFCGGDIMAMGAICAADE 260 (341)
T ss_pred HHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHH
Confidence 4456667777766656899999988777665555543
No 285
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=30.45 E-value=1.5e+02 Score=20.12 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.+.+.+++... |.++|++.|...++.+.-++.
T Consensus 163 ~~~~~~~~~~l~~~-~~~ai~~~~d~~a~~~~~~l~ 197 (268)
T cd06298 163 ESGYELAEELLEDG-KPTAAFVTDDELAIGILNAAQ 197 (268)
T ss_pred hHHHHHHHHHhcCC-CCCEEEEcCcHHHHHHHHHHH
Confidence 34445555665544 389999988877666544444
No 286
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=30.34 E-value=54 Score=24.74 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.5
Q ss_pred CCceEEEee-chHHHHHHHHH
Q psy2496 71 GPFDGILGF-SQGAELLGLIC 90 (102)
Q Consensus 71 gp~dgilGF-SQGa~~a~~l~ 90 (102)
+.-++|+|+ |||.++|..|.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~ 37 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLR 37 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHH
Confidence 346899988 99999998875
No 287
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=30.33 E-value=84 Score=21.50 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCceEEEeechHHHHHHHH
Q psy2496 61 PFIEEVIRSKGPFDGILGFSQGAELLGLI 89 (102)
Q Consensus 61 ~~l~~~i~~~gp~dgilGFSQGa~~a~~l 89 (102)
+.|.+.+. .| ..++|.|-||++....
T Consensus 105 ~~i~~~~~-~G--~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 105 DAILKRVA-RG--VVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHHH-cC--CeEEEcCHHHHHhhhc
Confidence 34444444 33 3589999999998864
No 288
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=29.99 E-value=1.5e+02 Score=21.24 Aligned_cols=36 Identities=8% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.+.+.++++.+..+++|++.|...++.+.-++..
T Consensus 229 ~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~~l~~ 264 (342)
T PRK10014 229 QAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLR 264 (342)
T ss_pred HHHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHH
Confidence 445566677766556899999998888876655543
No 289
>KOG2281|consensus
Probab=29.55 E-value=62 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=18.6
Q ss_pred CceEEEeechHHHHHHHHHhhh
Q psy2496 72 PFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~~~ 93 (102)
..+||-|.|-||-|+++.+.+.
T Consensus 727 drV~vhGWSYGGYLSlm~L~~~ 748 (867)
T KOG2281|consen 727 DRVGVHGWSYGGYLSLMGLAQY 748 (867)
T ss_pred hheeEeccccccHHHHHHhhcC
Confidence 3588999999999999888765
No 290
>KOG4436|consensus
Probab=29.34 E-value=49 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 55 GFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.-+++.+.+.+++.--.+-=.|||||++....++.++
T Consensus 255 ~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~ 293 (948)
T KOG4436|consen 255 DIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQ 293 (948)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhc
Confidence 344445555555555433345678999987777766653
No 291
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.21 E-value=1.9e+02 Score=19.67 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+++.+.+.+++++..+.++|++.|-..++++.-++.
T Consensus 163 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~ 198 (270)
T cd06296 163 ESGFRAAAELLALPERPTAIFAGNDLMALGVYEAAR 198 (270)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHH
Confidence 344555666666555579999998887766555554
No 292
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=29.16 E-value=1.9e+02 Score=19.67 Aligned_cols=38 Identities=8% Similarity=-0.083 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhh-CCceEEEeechHHHHHHHHHhhh
Q psy2496 56 FNESFPFIEEVIRSK-GPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~-gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+++.+.+.++++++ .+.++|++.|-..++.+.-++.+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~al~~ 199 (264)
T cd06274 161 PESGYQLMAELLARLGRLPRALFTTSYTLLEGVLRFLRE 199 (264)
T ss_pred hHHHHHHHHHHHccCCCCCcEEEEcChHHHHHHHHHHHH
Confidence 345667777888766 45899999987766665555443
No 293
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=28.61 E-value=96 Score=20.58 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHhhCCc-eEEEeechHHHHHHH
Q psy2496 54 TGFNESFPFIEEVIRSKGPF-DGILGFSQGAELLGL 88 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~-dgilGFSQGa~~a~~ 88 (102)
...++..+.|.++|.++.|- ++|-|+|..+.....
T Consensus 46 ~~~~~~~~~l~~~i~~~kP~vI~v~g~~~~s~~l~~ 81 (150)
T PF14639_consen 46 ERKEEDMERLKKFIEKHKPDVIAVGGNSRESRKLYD 81 (150)
T ss_dssp S-SHHHHHHHHHHHHHH--SEEEE--SSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCChhHHHHHH
Confidence 44567788999999998774 445599998876543
No 294
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=27.81 E-value=21 Score=13.80 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=5.0
Q ss_pred cCccCcC
Q psy2496 95 KNCKYLK 101 (102)
Q Consensus 95 ~~~~~~~ 101 (102)
..++|||
T Consensus 3 ~~~CFWK 9 (12)
T PF02083_consen 3 KSECFWK 9 (12)
T ss_pred ccchhhh
Confidence 3578887
No 295
>KOG2984|consensus
Probab=27.74 E-value=38 Score=24.54 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=26.3
Q ss_pred HhhHHHHHHHHHHHHHhh-CCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRSK-GPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~-gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+-+.+-.++-.+.++.. -+..-|+|.|-||+.|+.++...
T Consensus 94 ~~ff~~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~ 135 (277)
T KOG2984|consen 94 VQFFMKDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKG 135 (277)
T ss_pred HHHHHHhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccC
Confidence 344444445555555442 24466999999999888777654
No 296
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=27.69 E-value=80 Score=21.96 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=17.1
Q ss_pred HHHHHHHhhCCceEEEeechHHHHHHHHH
Q psy2496 62 FIEEVIRSKGPFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 62 ~l~~~i~~~gp~dgilGFSQGa~~a~~l~ 90 (102)
.|++.++ .| ..++|.|-||++.....
T Consensus 109 ~l~~~~~-~G--~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 109 ALRKVYR-GG--VVIGGTSAGAAVMSDTM 134 (217)
T ss_pred HHHHHHH-cC--CEEEEccHHHHhhhhcc
Confidence 3444444 33 24899999999976553
No 297
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.60 E-value=2.1e+02 Score=19.94 Aligned_cols=38 Identities=3% Similarity=0.030 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+++.+.+.+++++....++|++.|--.++.+.-++.+.
T Consensus 163 ~~~~~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~~~ 200 (269)
T cd06287 163 EAGYAACAQLLAQHPDLDALCVPVDAFAVGAVRAATEL 200 (269)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHc
Confidence 44556666666654447999999888777776666543
No 298
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=27.43 E-value=74 Score=24.43 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=17.9
Q ss_pred hhCCceEEEeechHHHHHHHHHh
Q psy2496 69 SKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 69 ~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
+.|-..+++|||.+|.-|..+..
T Consensus 231 ~sg~~m~g~G~s~p~sgaeH~~h 253 (360)
T COG0371 231 ESGTAMSGLGSSRPASGAEHAFH 253 (360)
T ss_pred HhcceEEeccCCCCccHHHHHHH
Confidence 34667889999999988876654
No 299
>PRK12361 hypothetical protein; Provisional
Probab=27.31 E-value=89 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=34.1
Q ss_pred hHhhHHHHHHHHHHHHHhhCC--ceEEEeechHHHHHHHHHhhhc
Q psy2496 52 IVTGFNESFPFIEEVIRSKGP--FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp--~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+.+.++++++.|.+.+++.++ +.+-.|.|=-+++++.+++...
T Consensus 157 ~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 157 TLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred cHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 467889999999998887776 3446699999999988887654
No 300
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=27.23 E-value=2.3e+02 Score=21.60 Aligned_cols=41 Identities=17% Similarity=0.023 Sum_probs=26.0
Q ss_pred HhhHHHHHHHHHHHHHh---h-----CCceEEEeechHHHHHHHHHhhh
Q psy2496 53 VTGFNESFPFIEEVIRS---K-----GPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~---~-----gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+-..++|++.+..+++. . .....++|=|=||+||+.+-+..
T Consensus 86 yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~ky 134 (434)
T PF05577_consen 86 YLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKY 134 (434)
T ss_dssp C-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-
T ss_pred hcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhC
Confidence 45667777766666642 1 12355888899999999876654
No 301
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=27.18 E-value=2e+02 Score=20.69 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+.+.+.++++...++++|++.|-..++.+.-++..
T Consensus 223 ~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~ 258 (343)
T PRK10727 223 GGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLND 258 (343)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 345566666765556799999988877766555543
No 302
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=26.82 E-value=28 Score=26.22 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=14.6
Q ss_pred EEEeechHHHHHHHHHhh
Q psy2496 75 GILGFSQGAELLGLICCL 92 (102)
Q Consensus 75 gilGFSQGa~~a~~l~~~ 92 (102)
+++|.|+||.++..++..
T Consensus 92 ~iLGissGA~lg~~~~~~ 109 (330)
T PRK10440 92 DVMGFNTGAWSGVLVAMV 109 (330)
T ss_pred cHhhHHHHHHHHHHHHHH
Confidence 599999999888766553
No 303
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=26.63 E-value=14 Score=13.53 Aligned_cols=6 Identities=67% Similarity=1.182 Sum_probs=3.4
Q ss_pred eechHH
Q psy2496 78 GFSQGA 83 (102)
Q Consensus 78 GFSQGa 83 (102)
|||.|+
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 566554
No 304
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=26.45 E-value=37 Score=23.15 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=9.7
Q ss_pred cCCcEEEeccCCeec
Q psy2496 6 KSLAELTYIDAPYVI 20 (102)
Q Consensus 6 ~~~~~f~f~daP~~~ 20 (102)
...+++||+|.||..
T Consensus 112 ~~~fDiIflDPPY~~ 126 (183)
T PF03602_consen 112 GEKFDIIFLDPPYAK 126 (183)
T ss_dssp TS-EEEEEE--STTS
T ss_pred CCCceEEEECCCccc
Confidence 356999999999964
No 305
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=26.25 E-value=2.1e+02 Score=19.31 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.+.+.++++.+.+.++|+..+-..++.+.-++..
T Consensus 161 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~ 196 (260)
T cd06286 161 DGERIGHQLLKMKDRPDAIFTGSDEVAAGIITEAKK 196 (260)
T ss_pred HHHHHHHHHHcCCCCCCEEEEcchHHHHHHHHHHHH
Confidence 334555556655446799999998887766555543
No 306
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=26.17 E-value=2.1e+02 Score=19.35 Aligned_cols=36 Identities=3% Similarity=0.019 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
++.+.+.+++++..+.++|++-|...++++.-++.+
T Consensus 164 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~ 199 (269)
T cd06275 164 GGYEAMQRLLAQPKRPTAVFCGNDLMAMGALCAAQE 199 (269)
T ss_pred HHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHH
Confidence 444556666665556799999987776665544443
No 307
>KOG2100|consensus
Probab=26.10 E-value=97 Score=26.03 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHhh---CCceEEEeechHHHHHHHHHhhhc
Q psy2496 55 GFNESFPFIEEVIRSK---GPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~---gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
.+++-+..++.+++.. ...++|+|.|-||=|++.++...+
T Consensus 588 ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~ 630 (755)
T KOG2100|consen 588 EVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDP 630 (755)
T ss_pred chHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCc
Confidence 3444444444444432 135789999999999999887653
No 308
>KOG2183|consensus
Probab=26.03 E-value=1.1e+02 Score=24.45 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=23.5
Q ss_pred HhhHHHHHHHHHHHHH---h----hCCceEEEeechHHHHHHHHHh
Q psy2496 53 VTGFNESFPFIEEVIR---S----KGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~---~----~gp~dgilGFSQGa~~a~~l~~ 91 (102)
+-..+++++.....|. + +.-.+.++|=|-||++|+..=+
T Consensus 141 yLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRl 186 (492)
T KOG2183|consen 141 YLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRL 186 (492)
T ss_pred cccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHh
Confidence 3344555554444443 2 1224668899999999987644
No 309
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=25.96 E-value=1.7e+02 Score=19.95 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=28.9
Q ss_pred HhhHHHHHHHHHHHHHhhC-CceEEEeechHHHHHHHHHhh
Q psy2496 53 VTGFNESFPFIEEVIRSKG-PFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~g-p~dgilGFSQGa~~a~~l~~~ 92 (102)
.+.++.....+.+.+.+.. .+|.|+|-.-||...+..++.
T Consensus 44 p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~ 84 (202)
T PRK00455 44 PEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVAR 84 (202)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHH
Confidence 5667777777777777653 688999998877776555543
No 310
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=25.62 E-value=2.8e+02 Score=20.42 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHhhCCc----eEEEeechHHHHHHHHHhhh
Q psy2496 54 TGFNESFPFIEEVIRSKGPF----DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~----dgilGFSQGa~~a~~l~~~~ 93 (102)
+..++....|..+++....+ --|.|-|=||..+-.++...
T Consensus 29 ~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I 72 (319)
T PLN02213 29 SEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEI 72 (319)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHH
Confidence 33467777888888664322 44999999998776666643
No 311
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=25.46 E-value=2.1e+02 Score=19.00 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+...+.++++++...++|++.+-+.++.+.-++.
T Consensus 162 ~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~ 197 (264)
T cd06267 162 ESGYEAARELLASGERPTAIFAANDLMAIGALRALR 197 (264)
T ss_pred hhHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 445566677776665689999887665554444443
No 312
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=25.42 E-value=43 Score=21.35 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhCCceEEEeechHHHHH
Q psy2496 60 FPFIEEVIRSKGPFDGILGFSQGAELL 86 (102)
Q Consensus 60 ~~~l~~~i~~~gp~dgilGFSQGa~~a 86 (102)
.+.|++++++.+| ++|..-||-+|
T Consensus 67 ~~~i~~~v~~g~p---~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGN---YLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCc---EEEEecCccce
Confidence 5677788866667 56666777665
No 313
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=25.13 E-value=36 Score=26.15 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.0
Q ss_pred EEEeechHHHHHHHHHhh
Q psy2496 75 GILGFSQGAELLGLICCL 92 (102)
Q Consensus 75 gilGFSQGa~~a~~l~~~ 92 (102)
+++|.|+||.+++.++..
T Consensus 128 ~iLGissGA~lga~~~i~ 145 (366)
T PRK09535 128 SIIGVSSGAAVGAVAAIV 145 (366)
T ss_pred chhhHHhHHHHHHHHHHH
Confidence 699999999988876654
No 314
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=24.87 E-value=1.6e+02 Score=21.09 Aligned_cols=34 Identities=15% Similarity=0.394 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+.+.++|.+.+++. .++|.|-|-+|....-.+.+
T Consensus 40 ~~aA~~L~~~l~~~----~~iGv~wG~Tl~~~~~~l~~ 73 (255)
T PF04198_consen 40 EAAAEYLSELLKDG----DVIGVGWGRTLYAVANHLPP 73 (255)
T ss_dssp HHHHHHHHHH--TT----EEEEE-TSHHHHHHHHTS--
T ss_pred HHHHHHHHHhCCCC----CEEEEcchHHHHHHHHhcCc
Confidence 34555666666533 49999999999987776655
No 315
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=24.73 E-value=2.3e+02 Score=19.20 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 59 SFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 59 s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.+.++++++.+.++|++.|.-.++.+.-++.
T Consensus 160 ~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~ 193 (265)
T cd06291 160 KKEEIKELLEEYPDIDGIFASNDLTAILVLKEAQ 193 (265)
T ss_pred HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHH
Confidence 4566777777766679999877665555444443
No 316
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.68 E-value=2.3e+02 Score=19.12 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 58 ESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
.+.+.+.++++.....++|++.|-..++.+.-++..
T Consensus 167 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 202 (268)
T cd06271 167 GGYAAAAELLALPDRPTAIVCSSELMALGVLAALAE 202 (268)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 344556666655555799999987766655444443
No 317
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=24.56 E-value=96 Score=20.52 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEE--eechH
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGIL--GFSQG 82 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgil--GFSQG 82 (102)
..+++..+.|..+.+++||||-++ |=-|+
T Consensus 8 G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~ 38 (150)
T cd07380 8 GRLKALFEKVNTINKKKGPFDALLCVGDFFG 38 (150)
T ss_pred ccHHHHHHHHHHHhcccCCeeEEEEecCccC
Confidence 456777788888877789998854 54444
No 318
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=24.37 E-value=85 Score=22.21 Aligned_cols=20 Identities=10% Similarity=-0.085 Sum_probs=16.5
Q ss_pred CceEEEeechHHHHHHHHHh
Q psy2496 72 PFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 72 p~dgilGFSQGa~~a~~l~~ 91 (102)
.-+-|+++|.|-.+|..++.
T Consensus 57 ~~i~lvAWSmGVw~A~~~l~ 76 (213)
T PF04301_consen 57 REIYLVAWSMGVWAANRVLQ 76 (213)
T ss_pred ceEEEEEEeHHHHHHHHHhc
Confidence 34679999999999988754
No 319
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=24.31 E-value=1.6e+02 Score=18.29 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHhh-CCceEEEeec
Q psy2496 54 TGFNESFPFIEEVIRSK-GPFDGILGFS 80 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~-gp~dgilGFS 80 (102)
.+..+.+..|.+-.+++ +.++-|+||-
T Consensus 56 ~~~~~Vl~el~~c~~~~p~~yVRlig~D 83 (99)
T PF00101_consen 56 TDPAQVLAELEACLAEHPGEYVRLIGFD 83 (99)
T ss_dssp SSHHHHHHHHHHHHHHSTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEEEc
Confidence 45666778888888886 5799999984
No 320
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=24.29 E-value=1.9e+02 Score=18.02 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCccccCCCCCCCChhhHhhHHHHHHHHHHHHHhh-CCceEEEeec
Q psy2496 36 EQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRSK-GPFDGILGFS 80 (102)
Q Consensus 36 ~~~~W~~~~~~~~~~~~~~~~~~s~~~l~~~i~~~-gp~dgilGFS 80 (102)
..++|--..-+.|+ -.+..+.+..|.+-.+++ +.++-|+||.
T Consensus 42 ~~~yW~mwklP~f~---~~d~~~Vl~ei~~C~~~~p~~YVRliG~D 84 (99)
T cd03527 42 DNRYWTMWKLPMFG---CTDPAQVLREIEACRKAYPDHYVRVVGFD 84 (99)
T ss_pred CCCEEeeccCCCCC---CCCHHHHHHHHHHHHHHCCCCeEEEEEEe
Confidence 45568654332233 234556677777777776 4689999995
No 321
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=24.17 E-value=28 Score=19.80 Aligned_cols=11 Identities=27% Similarity=0.247 Sum_probs=8.0
Q ss_pred eEEEeechHHH
Q psy2496 74 DGILGFSQGAE 84 (102)
Q Consensus 74 dgilGFSQGa~ 84 (102)
...+||+||..
T Consensus 33 ly~vG~~q~~~ 43 (60)
T TIGR02459 33 VYFVGFSHIDA 43 (60)
T ss_pred HHHHhhccHHH
Confidence 44779999754
No 322
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=24.06 E-value=2e+02 Score=21.28 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHh
Q psy2496 55 GFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 55 ~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
+.+++.+.+.++++.+...++|++++-.++.++.-++
T Consensus 192 d~~~a~~~~~~lL~~~pdi~aI~~~~~~~~~Ga~~Al 228 (336)
T PRK15408 192 DATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAA 228 (336)
T ss_pred cHHHHHHHHHHHHHHCCCCcEEEECCCccHHHHHHHH
Confidence 4566777888888888778999998665554433333
No 323
>KOG3553|consensus
Probab=24.06 E-value=32 Score=21.87 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=14.6
Q ss_pred HHhhCCceEEEeechHHHH
Q psy2496 67 IRSKGPFDGILGFSQGAEL 85 (102)
Q Consensus 67 i~~~gp~dgilGFSQGa~~ 85 (102)
++.+|...-++||+-||.+
T Consensus 27 ~d~~Gre~l~~GFkIGGGI 45 (124)
T KOG3553|consen 27 YDQQGRENLILGFKIGGGI 45 (124)
T ss_pred hhcCCcEEEEEEEEecccc
Confidence 3456777779999999874
No 324
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.88 E-value=1.5e+02 Score=18.62 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=33.9
Q ss_pred hHhhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 52 IVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
..+.+..+...|...+.+-+..-+++|++.=+.||+..++.
T Consensus 21 qee~L~~~A~~lD~kv~eik~~~~~~~~~rl~vmaAlNv~~ 61 (105)
T COG3027 21 QEEHLRQAARLLDDKVRELKESNGVLDTERLAVMAALNVMH 61 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHH
Confidence 46788888888999998877778899999999999877653
No 325
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=23.88 E-value=35 Score=22.24 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=10.2
Q ss_pred cEEEeccCCeecc
Q psy2496 9 AELTYIDAPYVIE 21 (102)
Q Consensus 9 ~~f~f~daP~~~~ 21 (102)
-+=+|++|||.+-
T Consensus 14 ~~PvfVEGPf~vw 26 (126)
T PF14784_consen 14 DEPVFVEGPFSVW 26 (126)
T ss_pred CCcEEEECCcEEE
Confidence 5779999998653
No 326
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=23.63 E-value=1.1e+02 Score=17.86 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHhhCCc
Q psy2496 54 TGFNESFPFIEEVIRSKGPF 73 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~ 73 (102)
+.-.++++.+.++++++|+|
T Consensus 46 ~eN~eai~~~n~~ve~~G~~ 65 (72)
T PRK13710 46 AENREGMAEVARFIEMNGSF 65 (72)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 34567788888899888864
No 327
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=23.25 E-value=76 Score=21.69 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=12.9
Q ss_pred CceEEEee-chHHHHHHHH
Q psy2496 72 PFDGILGF-SQGAELLGLI 89 (102)
Q Consensus 72 p~dgilGF-SQGa~~a~~l 89 (102)
..+.|+|| |||-+.|..|
T Consensus 5 k~IAViGyGsQG~a~AlNL 23 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNL 23 (165)
T ss_dssp SEEEEES-SHHHHHHHHHH
T ss_pred CEEEEECCChHHHHHHHHH
Confidence 45778887 8988877665
No 328
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.22 E-value=2.5e+02 Score=19.10 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.+.+.++++++...++|++.+...++.+.-++.
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 197 (269)
T cd06293 162 EFGRAAAAQLLARGDPPTAIFAASDEIAIGLLEVLR 197 (269)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 344556667776554579999888876665544444
No 329
>PRK13794 hypothetical protein; Provisional
Probab=23.02 E-value=2e+02 Score=22.74 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechH
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQG 82 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQG 82 (102)
.+|++.|+..++..+ -..+++||-|
T Consensus 233 ~~a~~~i~~~~~~~~-~~v~vs~SGG 257 (479)
T PRK13794 233 RNSIGFIRNTAEKIN-KPVTVAYSGG 257 (479)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEecch
Confidence 344455555553332 2468999944
No 330
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=22.88 E-value=2.6e+02 Score=19.53 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+++.+.+.++++.+..+++|+..|-+.++.+.-++..
T Consensus 198 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~ 234 (309)
T PRK11041 198 EAGAKALKQLLDLPQPPTAVFCHSDVMALGALSQAKR 234 (309)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 3445556666655445799998877766655555443
No 331
>PRK13795 hypothetical protein; Provisional
Probab=22.87 E-value=1.7e+02 Score=24.06 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechH
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQG 82 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQG 82 (102)
+++++.|++.++.. +-..+++||-|
T Consensus 229 ~~ai~~Ir~~~~~~-~~~v~Va~SGG 253 (636)
T PRK13795 229 KEAVNFIRGVAEKY-NLPVSVSFSGG 253 (636)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEecCc
Confidence 34455555555443 22468899955
No 332
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=22.68 E-value=2.6e+02 Score=19.82 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+++.+.+.++++.+.++++|+..|--.++.+.-++.
T Consensus 223 ~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 258 (328)
T PRK11303 223 EAGAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLL 258 (328)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 344555666666555678999888766555444443
No 333
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.60 E-value=2.4e+02 Score=19.47 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+.+.+.+.++++++..+++|++.|-..++.+.-++.
T Consensus 168 ~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~ 203 (272)
T cd06313 168 SKAARIWETWLTKYPQLDGAFCHNDSMALAAYQIMK 203 (272)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHH
Confidence 445667777777665589999998777766644444
No 334
>COG2111 MnhB Multisubunit Na+/H+ antiporter, MnhB subunit [Inorganic ion transport and metabolism]
Probab=22.53 E-value=57 Score=21.84 Aligned_cols=17 Identities=29% Similarity=0.114 Sum_probs=13.2
Q ss_pred EEeechHHHHHHHHHhh
Q psy2496 76 ILGFSQGAELLGLICCL 92 (102)
Q Consensus 76 ilGFSQGa~~a~~l~~~ 92 (102)
=.||+||...+..+.+.
T Consensus 48 gggft~g~v~a~a~iL~ 64 (162)
T COG2111 48 GGGFTGGVVEAIAIILL 64 (162)
T ss_pred CcchhhhhHHHHHHHHH
Confidence 46999999888776653
No 335
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=22.45 E-value=1.3e+02 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=12.9
Q ss_pred eEEEeechHHHHHHHHH
Q psy2496 74 DGILGFSQGAELLGLIC 90 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~ 90 (102)
+.++|+|+|=..|+.++
T Consensus 126 ~~~~GHSlGE~aA~~~A 142 (343)
T PLN02752 126 DVCAGLSLGEYTALVFA 142 (343)
T ss_pred CeeeeccHHHHHHHHHh
Confidence 57899999986665554
No 336
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=22.17 E-value=62 Score=24.51 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=29.8
Q ss_pred hhHhhHHHHHHHHHHHHHhhCCceEEEe--echHHHHHHHHHhhhc
Q psy2496 51 NIVTGFNESFPFIEEVIRSKGPFDGILG--FSQGAELLGLICCLKS 94 (102)
Q Consensus 51 ~~~~~~~~s~~~l~~~i~~~gp~dgilG--FSQGa~~a~~l~~~~~ 94 (102)
.....+..+++.+.+.|-++..-+|++| ||=|-+|=+....-.+
T Consensus 208 ~~~~~i~~~i~~~~~kIl~~q~~~G~~GNiySTglAmQAL~~~~~~ 253 (326)
T PF01122_consen 208 ELRRRIQQAIRSLVEKILSQQKPNGLFGNIYSTGLAMQALSVSPSP 253 (326)
T ss_dssp GGHHHHHHHHHHHHHHHHHTB-TTS-BSSTTTHHHHHHHHTT-SS-
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHhcCCCC
Confidence 3457888888888888876655588887 8888887766555443
No 337
>KOG0970|consensus
Probab=22.14 E-value=1.6e+02 Score=26.59 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCCceEEEeec-hHHHHHHHHHhhhccCccCcC
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFS-QGAELLGLICCLKSKNCKYLK 101 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFS-QGa~~a~~l~~~~~~~~~~~~ 101 (102)
+.-+.++.+.++..+| |.|+||- ||..+...+-.++...-+=|+
T Consensus 608 rALLs~fla~~~~~dp-D~iVgHn~~~~~l~VLl~R~~~~Kip~WS 652 (1429)
T KOG0970|consen 608 RALLSHFLAMLNKEDP-DVIVGHNIQGFYLDVLLSRLHALKIPNWS 652 (1429)
T ss_pred HHHHHHHHHHhhccCC-CEEEEeccccchHHHHHHHHHHhcCcchh
Confidence 3445667777777766 9999998 999999888777776666564
No 338
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=21.70 E-value=1.9e+02 Score=19.87 Aligned_cols=40 Identities=13% Similarity=-0.033 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeech----HHHHHHHHHhhhcc
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQ----GAELLGLICCLKSK 95 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQ----Ga~~a~~l~~~~~~ 95 (102)
.+...+.|.+.+++.+|-..++|.|- |.-++..++.++.-
T Consensus 93 ~e~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga 136 (202)
T cd01714 93 TLATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGW 136 (202)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCC
Confidence 34445566777777777666777666 77888888877653
No 339
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=21.69 E-value=2.6e+02 Score=18.85 Aligned_cols=34 Identities=9% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHH
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLIC 90 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~ 90 (102)
+++.+.+.+++++..++++|+..|...++.+.-+
T Consensus 166 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~ 199 (268)
T cd06323 166 AKGLNVMENILQAHPDIKGVFAQNDEMALGAIEA 199 (268)
T ss_pred HHHHHHHHHHHHHCCCcCEEEEcCCchHHHHHHH
Confidence 3445566676766555889988887777654333
No 340
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=21.55 E-value=2.6e+02 Score=18.62 Aligned_cols=43 Identities=7% Similarity=0.110 Sum_probs=29.6
Q ss_pred hHhhHHHHHHHHHHHHHh----hCC--ceEEEeechHHHHHHHHHhhhc
Q psy2496 52 IVTGFNESFPFIEEVIRS----KGP--FDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 52 ~~~~~~~s~~~l~~~i~~----~gp--~dgilGFSQGa~~a~~l~~~~~ 94 (102)
..+.+++.++.+.+++.. .++ +....|.|=-|++++.+++...
T Consensus 76 ~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 76 PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 456677778888887755 344 2335699999998888876543
No 341
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=21.55 E-value=1.1e+02 Score=21.03 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~ 93 (102)
+.+.+++.+.|++.+. .++|+|-|.++...+-.+.
T Consensus 5 ~~~a~~l~~~i~~~~~--~~i~lsgG~T~~~~~~~l~ 39 (232)
T cd01399 5 EAAAELIAELIREKPP--AVLGLATGSTPLGVYEELI 39 (232)
T ss_pred HHHHHHHHHHHHhCCC--cEEEEcCCCCHHHHHHHHH
Confidence 4566778888877643 4899999977666554443
No 342
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.47 E-value=2.7e+02 Score=18.76 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+++.+.+.++++++.++++|+..|-..++.+.-+++
T Consensus 163 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~ 198 (267)
T cd06283 163 DELDERLRQLLNKPKKKTAIFAANGLILLEVLKALK 198 (267)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 445566777776655689999887665555444443
No 343
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.36 E-value=2.6e+02 Score=18.97 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+++.+.+.++++.+...++|++-|...++.+.-++.
T Consensus 164 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~ 199 (267)
T cd06322 164 AEALTAAQNILQANPDLDGIFAFGDDAALGAVSAIK 199 (267)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHHH
Confidence 445566677776665678999888777666554444
No 344
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.26 E-value=2.8e+02 Score=18.91 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhCCceEEEeechHHHHHH
Q psy2496 56 FNESFPFIEEVIRSKGPFDGILGFSQGAELLG 87 (102)
Q Consensus 56 ~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~ 87 (102)
.+.+.+.+.++++++.++++|++.|--.++.+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~ 191 (269)
T cd06281 160 AASGFDATRALLALPDRPTAIIAGGTQVLVGV 191 (269)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEcCcHHHHHH
Confidence 34456667777766556899988765444433
No 345
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=21.22 E-value=2.8e+02 Score=18.92 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICC 91 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~ 91 (102)
+++...+.++++.+...++|++.+...++.+.-++
T Consensus 171 ~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l 205 (275)
T cd06295 171 ESGRAAMRALLERGPDFDAVFAASDLMALGALRAL 205 (275)
T ss_pred HHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHH
Confidence 44556677777666568999988876555444333
No 346
>PRK09526 lacI lac repressor; Reviewed
Probab=21.09 E-value=3.1e+02 Score=19.55 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 58 ESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 58 ~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
.+.+.+.++++.+.++++|+..|-..++.+.-++.
T Consensus 226 ~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 260 (342)
T PRK09526 226 SGYQQTLQMLREGPVPSAILVANDQMALGVLRALH 260 (342)
T ss_pred HHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHH
Confidence 34455666665555679999888777766555544
No 347
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=21.01 E-value=1.6e+02 Score=23.15 Aligned_cols=20 Identities=40% Similarity=0.331 Sum_probs=16.8
Q ss_pred eEEEeechHHHHHHHHHhhh
Q psy2496 74 DGILGFSQGAELLGLICCLK 93 (102)
Q Consensus 74 dgilGFSQGa~~a~~l~~~~ 93 (102)
..|.|=|-||.+|+.++.-.
T Consensus 43 ~~iaGaSAGAL~aa~~a~g~ 62 (405)
T cd07223 43 RRIYGSSSGALNAVSIVCGK 62 (405)
T ss_pred CeeeeeCHHHHHHHHHHhCC
Confidence 56999999999999888643
No 348
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=20.92 E-value=3e+02 Score=19.35 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEEeechHH
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGILGFSQGA 83 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgilGFSQGa 83 (102)
..++.-...|++++++.|--..++|+|=|-
T Consensus 5 ~~~~~l~~~l~~~~~~~~~~~vvv~lSGGi 34 (248)
T cd00553 5 EIINALVLFLRDYLRKSGFKGVVLGLSGGI 34 (248)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCCCcH
Confidence 344556678888888776556789999774
No 349
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=20.89 E-value=72 Score=23.27 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=15.0
Q ss_pred EeechHHHHHHHHHhhhc
Q psy2496 77 LGFSQGAELLGLICCLKS 94 (102)
Q Consensus 77 lGFSQGa~~a~~l~~~~~ 94 (102)
+|+|.||.+-+.+...-.
T Consensus 95 vGHSlGcklhlLi~s~~~ 112 (250)
T PF07082_consen 95 VGHSLGCKLHLLIGSLFD 112 (250)
T ss_pred eecccchHHHHHHhhhcc
Confidence 899999999888876643
No 350
>PF11695 DUF3291: Domain of unknown function (DUF3291); InterPro: IPR021708 This bacterial family of proteins has no known function.
Probab=20.70 E-value=1.3e+02 Score=19.82 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=19.7
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeech
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQ 81 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQ 81 (102)
..+++++.+.|.. ++++||-.--.+|+|
T Consensus 111 ~Pt~~EA~~RL~~-L~~hGps~~AFtf~~ 138 (140)
T PF11695_consen 111 RPTWQEAVERLEH-LRDHGPSPFAFTFKQ 138 (140)
T ss_pred CCCHHHHHHHHHH-HHHhCCCcccccCCC
Confidence 4688888888754 456888666666664
No 351
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=20.63 E-value=2.1e+02 Score=19.54 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+++.+.+.++++++...++|++.+-. ++.+.-++.
T Consensus 170 ~~~~~~~~~~l~~~~~~~~i~~~~d~-A~g~~~al~ 204 (272)
T cd06300 170 AVAQKAVADFLASNPDVDGIWTQGGD-AVGAVQAFE 204 (272)
T ss_pred HHHHHHHHHHHHhCCCcCEEEecCCC-cHHHHHHHH
Confidence 44566777777766557999999887 554444443
No 352
>PRK11761 cysM cysteine synthase B; Provisional
Probab=20.54 E-value=2.6e+02 Score=20.37 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhhhc
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKS 94 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~~~ 94 (102)
+++++.++.+.+.+|- ++|-|-|+++++.+-+..+
T Consensus 237 ~e~~~a~~~l~~~~gi---~ve~ssga~laaa~~~~~~ 271 (296)
T PRK11761 237 QEAENTMRRLAREEGI---FCGVSSGGAVAAALRIARE 271 (296)
T ss_pred HHHHHHHHHHHHHhCc---eEchhHHHHHHHHHHHHHH
Confidence 5667777778877653 5799999999988776544
No 353
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=20.29 E-value=2.2e+02 Score=18.45 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=21.7
Q ss_pred HhhHHHHHHHHHHHHHhhCCceEEEeechHH
Q psy2496 53 VTGFNESFPFIEEVIRSKGPFDGILGFSQGA 83 (102)
Q Consensus 53 ~~~~~~s~~~l~~~i~~~gp~dgilGFSQGa 83 (102)
.+...+++..+...+.+.+...+|++||-++
T Consensus 19 l~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~ 49 (174)
T cd01454 19 IDVAKKAAVLLAEALEACGVPHAILGFTTDA 49 (174)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecCCC
Confidence 4455666666777776656678999999873
No 354
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=20.28 E-value=3.1e+02 Score=19.00 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhCCceEEEeechHHHHHHHHHhh
Q psy2496 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCL 92 (102)
Q Consensus 57 ~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l~~~ 92 (102)
+++.+.+.++++.+.++++|++.+-..++.+.-++.
T Consensus 175 ~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~l~al~ 210 (280)
T cd06303 175 QKAYQATSDILSNNPDVDFIYACSTDIALGASDALK 210 (280)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCcHHHHHHHHHHH
Confidence 344556667776555578999877666655444443
No 355
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=20.27 E-value=1.2e+02 Score=20.92 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=12.1
Q ss_pred EEEeechHHHHHHH
Q psy2496 75 GILGFSQGAELLGL 88 (102)
Q Consensus 75 gilGFSQGa~~a~~ 88 (102)
.++|.|-|+.+...
T Consensus 116 ~i~G~SAGa~i~~~ 129 (212)
T cd03146 116 VYIGWSAGSNCWFP 129 (212)
T ss_pred EEEEECHhHHhhCC
Confidence 48999999998876
No 356
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=20.26 E-value=3e+02 Score=18.80 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHhhCCceEEEeechHHHHHHHH
Q psy2496 54 TGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLI 89 (102)
Q Consensus 54 ~~~~~s~~~l~~~i~~~gp~dgilGFSQGa~~a~~l 89 (102)
..+..-++.+.+.++..|-+....|++|+..+...+
T Consensus 194 ~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l 229 (251)
T TIGR03534 194 DFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALF 229 (251)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHH
Confidence 344455666677777777766677888987655443
No 357
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=20.21 E-value=56 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCceEEEeec-hHHHHHHHHHh
Q psy2496 62 FIEEVIRSKGPFDGILGFS-QGAELLGLICC 91 (102)
Q Consensus 62 ~l~~~i~~~gp~dgilGFS-QGa~~a~~l~~ 91 (102)
.|.+.|+.-+| +.++|-| ||+++.-.++-
T Consensus 96 ~L~e~i~~v~p-tvlIG~S~~~g~ft~evv~ 125 (279)
T cd05312 96 SLLEVVKAVKP-TVLIGLSGVGGAFTEEVVR 125 (279)
T ss_pred CHHHHHHhcCC-CEEEEeCCCCCCCCHHHHH
Confidence 46666666566 8899999 78876655544
Done!