RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2496
(102 letters)
>gnl|CDD|217816 pfam03959, FSH1, Serine hydrolase (FSH1). This is a family of
serine hydrolases.
Length = 209
Score = 84.3 bits (209), Expect = 1e-21
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 1 MRKRLKSLAELTYIDAPYVIENP-----NISSLEDLAPTGEQRSWFHPLDDRYSENIVTG 55
+RK LK EL Y+DAP+ + S E+ R+WF DD N G
Sbjct: 27 LRKLLKKGVELVYLDAPFPLAEKADLPFEESDAEEGEDDEPYRAWFFGDDD---TNEYRG 83
Query: 56 FNESFPFIEEVIRSKGPFDGILGFSQGAELLGLIC 90
+ES ++ + I+ GPFDGILGFSQGA L ++
Sbjct: 84 LDESLDYVRDYIKENGPFDGILGFSQGAALAAILA 118
>gnl|CDD|237620 PRK14136, recX, recombination regulator RecX; Provisional.
Length = 309
Score = 28.4 bits (63), Expect = 0.57
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 1 MRKRLKSLAELTYIDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYSENIV 53
+ +R S AEL APY E+ ++ L D E+ W D R++E++V
Sbjct: 172 LSRREYSRAELARKLAPYADESDSVEPLLDAL---EREGWLS--DARFAESLV 219
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase.
Length = 302
Score = 27.8 bits (63), Expect = 0.80
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 15 DAPYVIENPNISSLEDLAPTGEQRSWF---HPLDDRYSENIV 53
P+V+ + +SLE++A WF P D +E+++
Sbjct: 88 GIPFVLSTVSSTSLEEVAAAAGGPLWFQLYVPKDRELTEDLL 129
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 27.8 bits (62), Expect = 0.85
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 50 ENIVTGFNESFPFIEEVIRSKGPFDGILGFSQGAELLGLICC 91
E IVT + FP+ + K + G LLGL+
Sbjct: 368 ETIVTAVTDEFPY----LLRKYKTWFLGLICVGMYLLGLLLV 405
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 27.1 bits (61), Expect = 1.6
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 29 EDLAPTGEQR-SWFHPLDDRYSENIVTGFNES 59
E + P EQR +W P + + ++ N +
Sbjct: 492 ESIDPIEEQRPAWLTPAVNNLANQVMVRINNA 523
>gnl|CDD|132868 cd07230, Pat_TGL4-5_like, Triacylglycerol lipase 4 and 5. TGL4 and
TGL5 are triacylglycerol lipases that are involved in
triacylglycerol mobilization and degradation; they are
found in lipid particles. Tgl4 is a functional ortholog
of mammalian adipose TG lipase (ATGL) and is
phosphorylated and activated by cyclin-dependent kinase
1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas
TGL5 is 26% homologus to TGL3. This family includes TGL4
(STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Length = 421
Score = 27.2 bits (61), Expect = 1.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 8 LAELTYIDAPYVIENPNISSLEDLAPTGEQRSW 40
L EL Y D P +++NP + D GE+ +W
Sbjct: 363 LPELNYSDFPKILKNPTPEFMLDACLRGERATW 395
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 26.5 bits (59), Expect = 1.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKGP 72
P++D + NI E+ FI++ I+ G
Sbjct: 44 PVEDNHETNISKYLPEAVEFIDDAIQKGGK 73
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 26.5 bits (59), Expect = 2.0
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 35 GEQRSWFHPLDDRYSENIVT---GFNESFPFIEEVIR---SKG-PFDGIL--GFSQGAEL 85
+WF + S N G S IEE+I G P I+ GFSQGA
Sbjct: 58 MRMPAWF-DIVGL-SPNASEDEAGIKNSAETIEELIDAELKTGIPASRIIIGGFSQGA-A 114
Query: 86 LGLICCLKS 94
+ L L S
Sbjct: 115 VALYTALTS 123
>gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional.
Length = 854
Score = 26.5 bits (58), Expect = 2.5
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 19/73 (26%)
Query: 4 RLKSLAELTYIDAPY---VIENPNISSLEDLAPTGEQRSWFHPLDDRYSENIVTGFNESF 60
RL ++ +L +D+P V P G + P+D R+ + T +E+
Sbjct: 272 RLANIQDLPAVDSPADDGVAPRL-------AGPEGANGEFDTPIDPRFPTYLATNLSEAL 324
Query: 61 PFIEEVIRSKGPF 73
P GPF
Sbjct: 325 P---------GPF 328
>gnl|CDD|171510 PRK12452, PRK12452, cardiolipin synthetase; Reviewed.
Length = 509
Score = 26.8 bits (59), Expect = 2.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRS 69
P DR + ++T +++F I + I
Sbjct: 135 PAADRTTTKLLTNGDQTFSEILQAIEQ 161
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 26.1 bits (58), Expect = 3.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKGP 72
P+DD I F E+ FIE+ G
Sbjct: 51 PIDDNTETKISPYFPEAVEFIEDAESKGGK 80
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase. The
cytidylyltransferase family includes cholinephosphate
cytidylyltransferase (CCT), glycerol-3-phosphate
cytidylyltransferase, RafE and phosphoethanolamine
cytidylyltransferase (ECT). All enzymes catalyze the
transfer of a cytidylyl group from CTP to various
substrates.
Length = 136
Score = 25.7 bits (57), Expect = 3.5
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 1 MRKRLKSLAELTYIDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYSENIVTGFNESF 60
+R + + L Y+D + G S+F PL++ + IV G ++
Sbjct: 52 EEQRAEVVEALKYVDEVIL---------------GHPWSYFKPLEELKPDVIVLGDDQKN 96
Query: 61 PFIEEVIRS 69
EE +
Sbjct: 97 GVDEEEVYE 105
>gnl|CDD|217871 pfam04069, OpuAC, Substrate binding domain of ABC-type glycine
betaine transport system. Part of a high affinity
multicomponent binding-protein-dependent transport
system involved in bacterial osmoregulation. This domain
is often fused to the permease component of the
transporter complex. Family members are often integral
membrane proteins or predicted to be attached to the
membrane by a lipid anchor. Glycine betaine is involved
in protection from high osmolarity environments for
example in Bacillus subtilis. The family member OpuBC is
closely related, and involved in choline transport.
Choline is necessary for the biosynthesis of glycine
betaine. L-carnitine is important for osmoregulation in
Listeria monocytogenes. Family also contains proteins
binding l-proline (ProX), histidine (HisX) and taurine
(TauA).
Length = 256
Score = 25.7 bits (57), Expect = 4.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 18 YVIENPNISSLEDLA 32
YV E P I S+ DLA
Sbjct: 95 YVAEKPGIKSISDLA 109
>gnl|CDD|165245 PHA02934, PHA02934, Hypothetical protein; Provisional.
Length = 253
Score = 25.8 bits (56), Expect = 4.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 14 IDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYSENIVTGFNES 59
ID I+N + +ED A + ++ +PL EN+V F++S
Sbjct: 39 IDNVQDIDNGIVQDIEDEASNNDDHNYVYPL----PENMVYRFDKS 80
>gnl|CDD|225730 COG3189, COG3189, Uncharacterized conserved protein [Function
unknown].
Length = 117
Score = 25.4 bits (56), Expect = 4.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 28 LEDLAPTGEQRSWFH 42
L+D+AP+ E R WFH
Sbjct: 42 LKDIAPSTELRKWFH 56
>gnl|CDD|218034 pfam04343, DUF488, Protein of unknown function, DUF488. This
family includes several proteins of uncharacterized
function.
Length = 123
Score = 25.3 bits (56), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 28 LEDLAPTGEQRSWFHPLDDRYSE 50
L++L P+ E R WFH D + E
Sbjct: 50 LKELGPSRELRKWFHH-DPDWDE 71
>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.
Length = 320
Score = 25.7 bits (57), Expect = 5.3
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 73 FDGILGFSQGAELLGLICCLKSKNCKYLK 101
F GI GF G E G C ++ K
Sbjct: 7 FAGIGGFRLGLEQAGFECVAANEIDKSAA 35
>gnl|CDD|222651 pfam14286, DHHW, DHHW protein. This family of proteins is found
in bacteria. Proteins in this family are typically
between 366 and 404 amino acids in length. There is a
conserved DHHW motif.
Length = 378
Score = 25.4 bits (56), Expect = 6.0
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 39 SWFHPLDDRYSENIVTGFNESFPFIEEVIRSKGPFDGILGFSQG 82
SW LD Y E++ T ++++FPF + + G
Sbjct: 12 SWDALLDGSYFEDVSTWYSDTFPFRDAFKSLNAGLRSLYGIRLN 55
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 25.3 bits (56), Expect = 6.1
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 10 ELTYIDAPYVIENPNISSLEDLAPTGEQ--RSWFHPLDDRYSENIVTGFNESF---PFIE 64
EL + P +I PN + + P E +F D+ S + E+ F+E
Sbjct: 31 ELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEG-SFDQEDLDLETEKLAEFLE 88
Query: 65 EVIRSKGPFDG---ILGFSQGA 83
E+ G ++GFSQGA
Sbjct: 89 ELAEEYGIDSSRIILIGFSQGA 110
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 25.1 bits (55), Expect = 7.3
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 61 PFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSKNC 97
PFIE R+ I+G S G L L L +C
Sbjct: 126 PFIEARYRTNSERTAIIGHSLGG-LFVLFALLTYPDC 161
>gnl|CDD|223399 COG0322, UvrC, Nuclease subunit of the excinuclease complex [DNA
replication, recombination, and repair].
Length = 581
Score = 24.9 bits (55), Expect = 8.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 RKRLKSLAELTYIDAPYVIENPNISSL 28
++ L++LA L + APY IE +IS +
Sbjct: 364 KQALEALAALLGLPAPYRIECFDISHI 390
>gnl|CDD|226068 COG3538, COG3538, Uncharacterized conserved protein [Function
unknown].
Length = 434
Score = 25.1 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 9/41 (21%)
Query: 15 DAPYVIENPNISSLE---------DLAPTGEQRSWFHPLDD 46
D+PY E + APTG S F P DD
Sbjct: 181 DSPYRFERDTDRKSDTLGRAGKGAPTAPTGMTWSGFRPSDD 221
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.423
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,355,803
Number of extensions: 459439
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 29
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)