RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2496
(102 letters)
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region;
esterase, lipase, serine hydrolase, structural genomics;
HET: LI5; 1.70A {Saccharomyces cerevisiae}
Length = 243
Score = 56.8 bits (136), Expect = 3e-11
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 1 MRKRL-KSLAELTYIDAPYVI---ENPNISSLEDLAPTGEQRSWFHPLDDRYSENIVTGF 56
+RK L K+ + YIDAP ++ + P E T + +
Sbjct: 28 IRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHSEISH-ELDI 86
Query: 57 NESFPFIEEVIRSKGPFDGILGFSQGAELLGLICCLKSKN 96
+E + + I++ GP+DGI+G SQGA L +I S+
Sbjct: 87 SEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISEL 126
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A;
hydrolase; HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 33.7 bits (78), Expect = 0.004
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P+ D I F E FI + G
Sbjct: 57 PVADTPEVPIKKHFKECINFIHCCRLNGG 85
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
+ D NI++ F E F FIEE R G
Sbjct: 54 SILDLPETNILSYFPECFEFIEEAKRKDG 82
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein
structure initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 33.0 bits (76), Expect = 0.006
Identities = 4/29 (13%), Positives = 8/29 (27%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
+ + + FI I+ K
Sbjct: 60 DIVSEEGHQLYDSIPNAIKFIIRSIQRKE 88
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 32.7 bits (75), Expect = 0.008
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P+ D + + F+ I V +G
Sbjct: 70 PVADSPNSRLCDFFDPIADHIHSVEMKQG 98
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 32.5 bits (75), Expect = 0.008
Identities = 4/29 (13%), Positives = 15/29 (51%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
+ D + +++ +N+++ FI + +
Sbjct: 54 RVYDEEATDLLAYWNDTYKFISKAKKHGS 82
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 32.7 bits (75), Expect = 0.009
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
+D N+ F + FI++ + K
Sbjct: 87 KANDTQEFNLSAYFERAADFIDQALAQKN 115
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural
genomics, phosphatase, PSI-2, protein structure
initiative; 1.60A {Homo sapiens}
Length = 154
Score = 32.6 bits (75), Expect = 0.009
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
+ D ENI+ F + FI+ ++ G
Sbjct: 63 DIADNPVENIIRFFPMTKEFIDGSLQMGG 91
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 32.7 bits (75), Expect = 0.009
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
PL D I F+ I V R G
Sbjct: 76 PLADMPHAPIGLYFDTVADKIHSVSRKHG 104
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 32.8 bits (75), Expect = 0.009
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
PL D + +I F++ F+ + +
Sbjct: 98 PLVDDTTTDISKYFDDVTAFLSKCDQRNE 126
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 32.5 bits (75), Expect = 0.010
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P+ D +S+N+ F E+ FI+E +
Sbjct: 58 PISDHWSQNLSRFFPEAIEFIDEALSQNC 86
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 32.5 bits (75), Expect = 0.010
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P++D + +I + F E+ +I+ V +G
Sbjct: 54 PVEDNHKADISSWFMEAIEYIDAVKDCRG 82
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 32.4 bits (74), Expect = 0.011
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P++D ++ +I + F E+ FI+ V G
Sbjct: 56 PVEDSHTADISSHFQEAIDFIDCVREKGG 84
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 32.3 bits (74), Expect = 0.011
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P D +N+ F E+F FIEE +
Sbjct: 60 PATDSNKQNLRQYFEEAFEFIEEAHQCGK 88
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 32.4 bits (74), Expect = 0.011
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
PL D + +I F++ F+ + +
Sbjct: 81 PLVDDTTTDISKYFDDVTAFLSKCDQRNE 109
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 32.2 bits (74), Expect = 0.011
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P+ D +E+++T + +E +R G
Sbjct: 62 PVFDDPAEDLLTHLEPTCAAMEAAVRDGG 90
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase;
1.60A {Homo sapiens}
Length = 149
Score = 32.2 bits (74), Expect = 0.012
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P D +N+ F E+F FIEE +
Sbjct: 56 PATDSNKQNLRQYFEEAFEFIEEAHQCGK 84
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 32.2 bits (74), Expect = 0.013
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
P D S+N+ F ES FI E
Sbjct: 56 PAADSPSQNLTRHFKESIKFIHECRLRGE 84
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 32.0 bits (73), Expect = 0.014
Identities = 4/29 (13%), Positives = 8/29 (27%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
DD ++ F +I +
Sbjct: 103 EADDNPFFDLSVYFLPVARYIRAALSVPQ 131
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo
sapiens}
Length = 151
Score = 31.8 bits (73), Expect = 0.015
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
D + ++ F + FI + G
Sbjct: 57 EAHDSPAFDMSIHFQTAADFIHRALSQPG 85
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 31.6 bits (72), Expect = 0.023
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
DD + ++ F + FI+ +
Sbjct: 111 EADDLPTFDLSVFFYPAAAFIDRALSDDH 139
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 30.1 bits (68), Expect = 0.081
Identities = 4/48 (8%), Positives = 10/48 (20%)
Query: 24 NISSLEDLAPTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRSKG 71
N++ + +H + I I +
Sbjct: 71 NVAEEANDLRMQVPAVEYHHYRWEHDSQIALDLPSLTSIIHAATTKRE 118
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1;
phosphatidylglycerol phosphate (PGP) phosphatase,
hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Length = 157
Score = 29.7 bits (67), Expect = 0.088
Identities = 2/29 (6%), Positives = 6/29 (20%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
D + ++ F +
Sbjct: 62 STVDMTGVPTLANLHKGVQFALKYQALGQ 90
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 29.7 bits (67), Expect = 0.10
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 38 RSWF--HPLDDRYSENIVTGFNESFP----FIEEVIRSKGPFD--GILGFSQGA 83
SW+ + + N S I+E + + GFSQG
Sbjct: 75 PSWYDILAFSPARAIDE-DQLNASADQVIALIDEQRAKGIAAERIILAGFSQGG 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.12
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 32/125 (25%)
Query: 5 LKSLAELTY-IDAPYVIENPNISSLEDLAPTGEQR------SWFHP-----LDDRYSENI 52
L+ L +L Y ID + + + S+++ + + S + L + +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 53 VTGFNESFPFIEEVI-RSKGPFDGI--------------LGFSQGAELLGLICCLKSKNC 97
FN S + + R K D + + + E+ L LK +C
Sbjct: 259 WNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL--LLKYLDC 313
Query: 98 KYLKL 102
+ L
Sbjct: 314 RPQDL 318
Score = 26.7 bits (58), Expect = 1.6
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 1 MRKRLKSLAEL--TYIDAPYVIENPNISSLEDLAPTGEQRSWF-----HPLDDRYSENIV 53
++ +L++ L + +D Y I P +DL P + ++ H + + E +
Sbjct: 435 LKVKLENEYALHRSIVDH-YNI--PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-M 490
Query: 54 TGFNE---SFPFIEEVIRSKGP 72
T F F F+E+ IR
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDST 512
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 29.1 bits (65), Expect = 0.17
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 16 APYVIENPNISSLEDLAPTGEQRSWFHPLDDRYS--ENIVTGFNESFPFIEEVIRSKGPF 73
A + + + P + WF +D ++I+ F E + G
Sbjct: 50 ARRIAPTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLN 109
Query: 74 DG---ILGFSQGAEL 85
LG+S GA L
Sbjct: 110 LDHATFLGYSNGANL 124
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 28.7 bits (63), Expect = 0.32
Identities = 15/84 (17%), Positives = 21/84 (25%), Gaps = 7/84 (8%)
Query: 13 YIDAPYVIENPNISSLEDL----APTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIR 68
Y Y N S ED G + + +R
Sbjct: 486 YFLEAY---NAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLR 542
Query: 69 SKGPFDGILGFSQGAELLGLICCL 92
+ F G G S+G G+ L
Sbjct: 543 TLDVFSGCGGLSEGFHQAGISDTL 566
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 28.2 bits (63), Expect = 0.37
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 32 APTGEQ-RSWF--HPLDDRYSENIVTGFNESFPFIEEVIRSKGPFDG------ILGFSQG 82
G + SW+ + S ++ S + ++I ++ + GFSQG
Sbjct: 58 INGGYEMPSWYDIKAMSPARSISLE-ELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQG 116
Query: 83 A 83
Sbjct: 117 G 117
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 28.2 bits (62), Expect = 0.46
Identities = 2/29 (6%), Positives = 10/29 (34%)
Query: 43 PLDDRYSENIVTGFNESFPFIEEVIRSKG 71
+ D + ++ + + ++ G
Sbjct: 78 EIRDFDAFDLRMRLPAVVGTLYKAVKRNG 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.61
Identities = 11/117 (9%), Positives = 31/117 (26%), Gaps = 45/117 (38%)
Query: 1 MRKRLKSLAELTYIDAPYVIENPNISSLEDLAPTGEQRSWFHP---LDDRYSEN----IV 53
+R+ ++ T +D E +++ ++ L ++ +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKI----FKEINEHSTSYTFRSEKGLLSA--TQFTQPALT 1737
Query: 54 TGFNESFPFIE----EVIRSKGPFD--------------------GILGFSQGAELL 86
+E E ++SKG ++ E++
Sbjct: 1738 L--------MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Score = 25.4 bits (55), Expect = 4.2
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 29/105 (27%)
Query: 27 SLEDLAPTGEQRSWFH----PLDDRYSEN----------IVTGFN-ESFPFI-EEVIRSK 70
S+E L R P D+ N + F+ E+ ++ E V +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 71 GPF--------DG----ILGFSQGAELLGLIC-CLKSKNCKYLKL 102
G + G + + + + +K + ++L
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 24.2 bits (52), Expect = 9.9
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 19 VIENPNISSLEDLAPTGEQRSWFHPLDDRYSENIVTGFNESFPFIEEVIRSKGPFDGILG 78
VI NP ++ G++ + + YS I + E++ +
Sbjct: 1665 VINNPVNLTIHFGGEKGKR------IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 79 FSQGAELLGL 88
F LL
Sbjct: 1719 FRSEKGLLSA 1728
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 27.5 bits (62), Expect = 0.70
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 17 PYVIENPNISSLEDLAPTGEQRSWF--HPLDDRYSENIV 53
P+V+ + S+EDLA + WF + + ++ +V
Sbjct: 104 PFVLSTASNMSIEDLARQCDGDLWFQLYVIHREIAQGMV 142
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 26.9 bits (60), Expect = 0.96
Identities = 4/24 (16%), Positives = 7/24 (29%), Gaps = 4/24 (16%)
Query: 13 YIDAPYVI----ENPNISSLEDLA 32
Y+ VI + + L
Sbjct: 115 YVRNGMVIVTRQDPDAPVDADHLD 138
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus}
SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Length = 361
Score = 26.3 bits (58), Expect = 1.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 57 NESFPFIEEVIRSKGPFDGILG 78
N S P E+ S+ DGI G
Sbjct: 113 NVSGPTAEQSPDSELFLDGIFG 134
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 26.0 bits (58), Expect = 2.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 17 PYVIENPNISSLEDLAPTGEQRSWF 41
+ + SS+E++A TG +F
Sbjct: 103 IMTLSSWATSSVEEVASTGPGIRFF 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding
domain, TK1, UU-TK, transferase; HET: THM; 2.00A
{Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB:
2uz3_A*
Length = 223
Score = 24.9 bits (55), Expect = 4.8
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 44 LDDRYSENIVT 54
+D R NI +
Sbjct: 50 IDTRSIRNIQS 60
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 24.5 bits (52), Expect = 9.0
Identities = 13/84 (15%), Positives = 20/84 (23%), Gaps = 7/84 (8%)
Query: 13 YIDAPYVIENPNISSLEDLAPTGEQRSWFHPLDDRYS----ENIVTGFNESFPFIEEVIR 68
Y Y N + ED + + +R
Sbjct: 797 YFLEAY---NSKTKNFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPKLR 853
Query: 69 SKGPFDGILGFSQGAELLGLICCL 92
+ F G G S+G G+ L
Sbjct: 854 TLDVFSGCGGLSEGFHQAGISETL 877
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation,
transferase; HET: TTP; 1.83A {Homo sapiens} PDB:
1xbt_A* 2wvj_A* 2j87_A*
Length = 195
Score = 24.2 bits (53), Expect = 9.5
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 44 LDDRYSENIVT 54
D RYS + T
Sbjct: 58 KDTRYSSSFCT 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.423
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,616,936
Number of extensions: 85253
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 48
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)