RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2496
         (102 letters)



>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
          (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 226

 Score = 24.5 bits (53), Expect = 3.1
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 49 SENIVTGFNESFPFIEEVIRSKGPFDGILGF-SQG 82
           E IV G    FP + +  +      G++G+ SQ 
Sbjct: 23 DEYIVRGGRNLFPLLPDAFKGIKQI-GVIGWGSQA 56


>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
          haemolyticus [TaxId: 726]}
          Length = 327

 Score = 23.8 bits (50), Expect = 4.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 73 FDGILGFSQGAELLGLICCLKSKNCKY 99
          F G+ GF    E  G  C   ++  KY
Sbjct: 18 FAGLGGFRLALESCGAECVYSNEWDKY 44


>d1vr6a1 c.1.10.4 (A:1-338)
          3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
          (DAHP synthase, AroG) {Thermotoga maritima [TaxId:
          2336]}
          Length = 338

 Score = 23.5 bits (50), Expect = 5.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 58 ESFPFIEEVIRSKGPF 73
          ES   +E V+R   P+
Sbjct: 54 ESLDCVESVVRVLKPY 69


>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus
          aegyptius [TaxId: 197575]}
          Length = 324

 Score = 23.8 bits (50), Expect = 5.9
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 73 FDGILGFSQGAELLGLICCLKSKNCKY 99
          F G  G   G +  G      ++  K 
Sbjct: 7  FSGAGGLDLGFQKAGFRIICANEYDKS 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,630
Number of extensions: 16943
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 8
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)