BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2497
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human
Pyridoxine-5'-Phosphate Oxidase
Length = 261
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/233 (52%), Positives = 159/233 (68%), Gaps = 4/233 (1%)
Query: 5 STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
+ DL R Y+ E E + +P K F +WF EA P I EANAM +AT T++
Sbjct: 30 AAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRD 89
Query: 64 GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
G PS RM+LLK +GK+GF FFTN+ SRKG EL NP ASL FYWEPL R VR+EG V+K
Sbjct: 90 GKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149
Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
++E++ YF SRP +S+IGA+ S QS R+ + K EEL Q Y++ + VP+PK WGG
Sbjct: 150 PEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGG 208
Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
YV+ P+V+EFWQGQ++R+HDRIVF+R +P PLGP +H GE+ W YERL P
Sbjct: 209 YVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 249 NPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQ 308
NP ASL FYWEPL R VR+EG V+K ++E++ YF SRP +S+IGA+ S QS R+
Sbjct: 124 NPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREY 183
Query: 309 MSKITEELRQKYKEGDYVPRPK 330
+ K EEL Q Y++ + VP+PK
Sbjct: 184 LRKKNEELEQLYQDQE-VPKPK 204
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase
R229w Mutant
Length = 261
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/233 (51%), Positives = 158/233 (67%), Gaps = 4/233 (1%)
Query: 5 STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
+ DL R Y+ E E + +P K F +WF EA P I EANAM +AT T++
Sbjct: 30 AAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRD 89
Query: 64 GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
G PS RM+LLK +GK+GF FFTN+ SRKG EL NP ASL FYWEPL R VR+EG V+K
Sbjct: 90 GKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149
Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
++E++ YF SRP +S+IGA+ S QS R+ + K EEL Q Y++ + VP+PK WGG
Sbjct: 150 PEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGG 208
Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
YV+ P+V+EFWQGQ++R+HD IVF+R +P PLGP +H GE+ W YERL P
Sbjct: 209 YVLYPQVMEFWQGQTNRLHDWIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 249 NPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQ 308
NP ASL FYWEPL R VR+EG V+K ++E++ YF SRP +S+IGA+ S QS R+
Sbjct: 124 NPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREY 183
Query: 309 MSKITEELRQKYKEGDYVPRPK 330
+ K EEL Q Y++ + VP+PK
Sbjct: 184 LRKKNEELEQLYQDQE-VPKPK 204
>pdb|1CI0|A Chain A, Pnp Oxidase From Saccharomyces Cerevisiae
pdb|1CI0|B Chain B, Pnp Oxidase From Saccharomyces Cerevisiae
Length = 228
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 2/196 (1%)
Query: 22 VLLEKDIVKEPFKLFESWFHEANNTPGIIEANAM-FIATSTKNGIPSGRMVLLKSYGKNG 80
L EK + +P LF WF+EA P A+ F + +G S R++L K G
Sbjct: 25 TLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRG 84
Query: 81 FVFFTNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYAS 139
F ++N+ SRK +++A NP A++ F+W+ L+R VR+EG E + + S+ YF++RP S
Sbjct: 85 FTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGS 144
Query: 140 KIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSD 199
KIGA AS QS ++R+++ ++T++ +++K+ + +P P +WGG ++P IEFWQG+
Sbjct: 145 KIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPS 204
Query: 200 RVHDRIVFKRPVPGEP 215
R+HDR V++R +P
Sbjct: 205 RLHDRFVYRRKTENDP 220
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 60/88 (68%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
H A NP A++ F+W+ L+R VR+EG E + + S+ YF++RP SKIGA AS QS
Sbjct: 98 HDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVI 157
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRPKH 331
++R+++ ++T++ +++K+ + +P P +
Sbjct: 158 KNREELDELTQKNTERFKDAEDIPCPDY 185
>pdb|1G76|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1G79|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1WV4|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase In Tetragonal Crystal Form
pdb|1WV4|B Chain B, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase In Tetragonal Crystal Form
Length = 218
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 15/212 (7%)
Query: 23 LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
L +D+ +P LFE W +A + + AM +AT ++G P R+VLLK Y + G V
Sbjct: 22 LRRRDLPADPLTLFERWLSQACEAK-LADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV 80
Query: 83 FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
F+TN SRK +++ NP+ SL F W L+R V + G E+ S E YF SRP S+IG
Sbjct: 81 FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIG 140
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
A S QS +R + EL+QK+++G+ VP P WGG+ V + IEFWQG R+H
Sbjct: 141 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 199
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
DR +++R D W +RL P
Sbjct: 200 DRFLYQRE-------------NDAWKIDRLAP 218
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
H NP+ SL F W L+R V + G E+ S E YF SRP S+IGA S QS
Sbjct: 91 HQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRI 150
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRP 329
+R + EL+QK+++G+ VP P
Sbjct: 151 SARGILESKFLELKQKFQQGE-VPLP 175
>pdb|1G77|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5`-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1G78|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1JNW|A Chain A, Active Site Structure Of E. Coli Pyridoxine 5'-Phosphate
Oxidase
Length = 218
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 23 LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
L +D+ +P LFE W +A + + A +AT ++G P R+VLLK Y + G V
Sbjct: 22 LRRRDLPADPLTLFERWLSQACEAK-LADPTAXVVATVDEHGQPYQRIVLLKHYDEKGXV 80
Query: 83 FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
F+TN SRK +++ NP+ SL F W L+R V + G E+ S E YF SRP S+IG
Sbjct: 81 FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIG 140
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
A S QS +R + EL+QK+++G+ VP P WGG+ V + IEFWQG R+H
Sbjct: 141 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 199
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
DR +++R D W +RL P
Sbjct: 200 DRFLYQRE-------------NDAWKIDRLAP 218
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 239 GIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASD 298
G + H NP+ SL F W L+R V + G E+ S E YF SRP S+IGA S
Sbjct: 86 GSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIGAWVSK 145
Query: 299 QSRPCESRDQMSKITEELRQKYKEGDYVPRP 329
QS +R + EL+QK+++G+ VP P
Sbjct: 146 QSSRISARGILESKFLELKQKFQQGE-VPLP 175
>pdb|1DNL|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Fmn At 1.8 Angstrom
Resolution
Length = 199
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 23 LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
L +D+ +P LFE W +A + + A +AT ++G P R+VLLK Y + G V
Sbjct: 3 LRRRDLPADPLTLFERWLSQACEAK-LADPTAXVVATVDEHGQPYQRIVLLKHYDEKGXV 61
Query: 83 FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
F+TN SRK +++ NP+ SL F W L+R V + G E+ S E YF SRP S+IG
Sbjct: 62 FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIG 121
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
A S QS +R + EL+QK+++G+ VP P WGG+ V + IEFWQG R+H
Sbjct: 122 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 180
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
DR +++R D W +RL P
Sbjct: 181 DRFLYQRE-------------NDAWKIDRLAP 199
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
H NP+ SL F W L+R V + G E+ S E YF SRP S+IGA S QS
Sbjct: 72 HQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIGAWVSKQSSRI 131
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRP 329
+R + EL+QK+++G+ VP P
Sbjct: 132 SARGILESKFLELKQKFQQGE-VPLP 156
>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
pdb|2A2J|B Chain B, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
Length = 246
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 33 FKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKG 92
L W ++A G+ E NAM +AT +G P R VL K ++G FFT+Y S KG
Sbjct: 62 LTLLRRWLNDAQRA-GVSEPNAMVLAT-VADGKPVTRSVLCKILDESGVAFFTSYTSAKG 119
Query: 93 NELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 152
+LA P AS F W L R ++G V K S +E Y+ RP +++GA AS QSRP
Sbjct: 120 EQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPV 179
Query: 153 ESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI 205
SR Q+ E+ +++ + D +P P WGGY + P+++EFWQG+ +R+H+RI
Sbjct: 180 GSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRI 232
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
A P AS F W L R ++G V K S +E Y+ RP +++GA AS QSRP SR
Sbjct: 123 AVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSR 182
Query: 307 DQMSKITEELRQKYKEGDYVPRP 329
Q+ E+ +++ + D +P P
Sbjct: 183 AQLDNQLAEVTRRFADQDQIPVP 205
>pdb|1T9M|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
Aeruginosa
pdb|1T9M|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
Aeruginosa
Length = 214
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 32 PFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRK 91
P ++ +W A G+ E A+ +AT G PS R+V++ G+ G VF T+ +S+K
Sbjct: 29 PMEVLRNWLERARRY-GVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQK 87
Query: 92 GNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRP 151
G ELA+NP AS YW + + + G E+ D+ +D + SRPY + +IAS QS
Sbjct: 88 GRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQS-- 145
Query: 152 CESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKR 209
E+ + + E R+ + +PRP + + + + +EFW ++R+H+R+ + R
Sbjct: 146 -ETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDR 202
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
A+NP AS YW + + + G E+ D+ +D + SRPY + +IAS QS E+
Sbjct: 92 AQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQS---ETL 148
Query: 307 DQMSKITEELRQKYKEGDYVPRP 329
+ + E R+ + +PRP
Sbjct: 149 ADIHALRAEARRLAETDGPLPRP 171
>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
Fluorescens
pdb|1TY9|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
Fluorescens
Length = 222
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 31 EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSR 90
+P + +W A GI E A+ +AT+ G PS R+V++ G VF T+ S+
Sbjct: 36 DPMSVLHNWLERARRV-GIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQ 94
Query: 91 KGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSR 150
KG EL NP AS YW + + + G + + ++DD + RPYA+ S SR
Sbjct: 95 KGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATH---PMSSVSR 151
Query: 151 PCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRP 210
E + + RQ + +PRP+ + + + + +EFW +R+H+R+ + R
Sbjct: 152 QSEELQDVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDR- 210
Query: 211 VPGEPLGPHSHEGEDGWYYERLFP 234
+ GW RL P
Sbjct: 211 ------------SDTGWNVRRLQP 222
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 237 KQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIA 296
++G + LH NP AS YW + + + G + + ++DD + RPYA+
Sbjct: 94 QKGRELLH----NPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATH---PM 146
Query: 297 SDQSRPCESRDQMSKITEELRQKYKEGDYVPRPK 330
S SR E + + RQ + +PRP+
Sbjct: 147 SSVSRQSEELQDVQAMRNAARQLAELQGPLPRPE 180
>pdb|2I51|A Chain A, Crystal Structure Of A Pyridoxamine 5'-Phosphate
Oxidase-Related, Fmn Binding Protein (Npun_f5749) From
Nostoc Punctiforme Pcc 73102 At 1.40 A Resolution
pdb|2I51|B Chain B, Crystal Structure Of A Pyridoxamine 5'-Phosphate
Oxidase-Related, Fmn Binding Protein (Npun_f5749) From
Nostoc Punctiforme Pcc 73102 At 1.40 A Resolution
Length = 195
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 41 HEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSY--GKNGFVFFTNYNSRKGNELAEN 98
H + ++ A + +AT NG P+ R ++ + + N F T+ S K +++ +
Sbjct: 13 HALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDTRSAKADQIQQQ 72
Query: 99 PQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQ 133
P A + +Y+ + R G + S +S Q
Sbjct: 73 PWAEICWYFPNTREQFRXAGDLTLISSDDSHQDLQ 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,471,538
Number of Sequences: 62578
Number of extensions: 449817
Number of successful extensions: 797
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 23
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)