Query psy2497
Match_columns 331
No_of_seqs 310 out of 2309
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:42:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0259 PdxH Pyridoxamine-phos 100.0 2.8E-58 6E-63 405.5 20.9 210 8-234 4-214 (214)
2 KOG2586|consensus 100.0 9.3E-52 2E-56 362.4 16.0 216 6-234 11-228 (228)
3 PLN02918 pyridoxine (pyridoxam 100.0 1.7E-50 3.6E-55 407.6 24.4 215 7-234 329-544 (544)
4 PLN03049 pyridoxine (pyridoxam 100.0 4.5E-49 9.8E-54 394.4 24.6 216 7-234 247-462 (462)
5 TIGR00558 pdxH pyridoxamine-ph 100.0 2.9E-47 6.4E-52 347.7 25.0 212 6-234 6-217 (217)
6 PRK05679 pyridoxamine 5'-phosp 100.0 2.4E-44 5.2E-49 323.8 23.8 193 27-234 3-195 (195)
7 COG0259 PdxH Pyridoxamine-phos 100.0 1.6E-41 3.5E-46 299.3 12.5 117 198-331 57-173 (214)
8 KOG2586|consensus 100.0 5.9E-36 1.3E-40 262.8 11.0 118 198-331 67-185 (228)
9 PLN02918 pyridoxine (pyridoxam 100.0 3.2E-32 6.9E-37 275.2 17.1 132 175-331 368-499 (544)
10 PLN03049 pyridoxine (pyridoxam 100.0 1.3E-29 2.7E-34 254.3 16.1 119 197-331 299-417 (462)
11 PRK05679 pyridoxamine 5'-phosp 99.9 4.2E-23 9.2E-28 185.9 12.4 118 197-331 37-154 (195)
12 TIGR00558 pdxH pyridoxamine-ph 99.9 8E-23 1.7E-27 186.9 12.9 117 198-331 60-176 (217)
13 PF12766 Pyridox_oxase_2: Pyri 99.8 3.4E-19 7.4E-24 144.0 9.9 90 35-124 3-100 (100)
14 COG3871 Uncharacterized stress 99.8 2.7E-19 5.8E-24 151.2 9.6 117 51-199 16-134 (145)
15 PF01243 Pyridox_oxidase: Pyri 99.6 4.7E-15 1E-19 115.3 11.2 77 51-127 11-89 (89)
16 TIGR03618 Rv1155_F420 PPOX cla 99.6 9.3E-15 2E-19 119.9 13.5 72 56-127 1-74 (117)
17 TIGR03667 Rv3369 PPOX class pr 99.6 8.2E-15 1.8E-19 123.7 10.9 77 49-126 11-88 (130)
18 COG5135 Uncharacterized conser 99.5 1.6E-13 3.6E-18 121.0 9.9 80 50-129 21-117 (245)
19 TIGR03666 Rv2061_F420 PPOX cla 99.3 1.1E-11 2.4E-16 105.1 11.7 83 49-132 9-92 (132)
20 TIGR03668 Rv0121_F420 PPOX cla 99.2 2.5E-10 5.4E-15 97.9 13.2 79 49-127 9-103 (141)
21 KOG4558|consensus 99.1 4.9E-10 1.1E-14 99.4 12.1 86 40-125 13-119 (251)
22 PF10590 PNPOx_C: Pyridoxine 5 99.0 5.8E-10 1.3E-14 76.0 5.3 42 181-234 1-42 (42)
23 COG5015 Uncharacterized conser 98.8 1.5E-08 3.3E-13 83.3 8.9 115 51-198 10-125 (132)
24 PRK06733 hypothetical protein; 98.5 6.7E-07 1.4E-11 77.3 9.8 70 53-124 21-92 (151)
25 PRK03467 hypothetical protein; 98.5 2.3E-06 4.9E-11 73.5 11.8 83 34-127 8-96 (144)
26 PF01243 Pyridox_oxidase: Pyri 98.3 1.5E-06 3.3E-11 67.1 6.6 65 197-278 22-89 (89)
27 PF12900 Pyridox_ox_2: Pyridox 98.3 1.2E-05 2.7E-10 68.4 12.1 72 51-125 11-95 (143)
28 TIGR03618 Rv1155_F420 PPOX cla 98.1 4.9E-06 1.1E-10 67.9 6.0 66 198-278 8-74 (117)
29 TIGR03667 Rv3369 PPOX class pr 97.8 5.4E-05 1.2E-09 63.8 6.4 75 196-287 23-102 (130)
30 COG3467 Predicted flavin-nucle 97.8 0.00021 4.6E-09 62.9 10.2 75 51-127 22-108 (166)
31 PF13883 Pyrid_oxidase_2: Pyri 97.7 0.00042 9.1E-09 61.2 10.7 115 52-197 17-157 (170)
32 PF12766 Pyridox_oxase_2: Pyri 97.7 7.7E-05 1.7E-09 60.4 5.1 61 198-274 32-99 (100)
33 TIGR00026 hi_GC_TIGR00026 deaz 96.9 0.0095 2.1E-07 49.3 9.8 75 53-134 8-88 (113)
34 COG3871 Uncharacterized stress 95.6 0.035 7.6E-07 47.6 6.1 72 197-284 27-100 (145)
35 TIGR03666 Rv2061_F420 PPOX cla 95.0 0.1 2.2E-06 44.2 7.4 69 197-282 22-91 (132)
36 COG3576 Predicted flavin-nucle 93.9 0.12 2.6E-06 45.9 5.6 74 51-124 40-117 (173)
37 PF04075 DUF385: Domain of unk 93.9 0.2 4.4E-06 42.4 6.7 74 53-133 26-105 (132)
38 COG5135 Uncharacterized conser 90.8 0.12 2.6E-06 46.5 1.5 74 199-284 36-121 (245)
39 TIGR03668 Rv0121_F420 PPOX cla 89.8 0.47 1E-05 40.6 4.3 34 244-278 65-103 (141)
40 COG3787 Uncharacterized protei 89.3 2.2 4.7E-05 36.2 7.6 121 52-209 12-138 (145)
41 PRK03467 hypothetical protein; 87.9 1.2 2.7E-05 38.4 5.5 59 226-289 45-111 (144)
42 PF13883 Pyrid_oxidase_2: Pyri 85.2 0.78 1.7E-05 40.4 3.0 46 244-289 66-129 (170)
43 PRK06733 hypothetical protein; 84.4 2.4 5.1E-05 36.9 5.5 47 223-276 47-93 (151)
44 KOG3374|consensus 83.5 15 0.00033 32.8 10.1 70 56-125 62-150 (210)
45 PF04299 FMN_bind_2: Putative 82.5 34 0.00074 30.2 13.9 72 52-124 22-118 (169)
46 COG0748 HugZ Putative heme iro 79.7 0.29 6.2E-06 45.7 -2.0 57 50-107 92-148 (245)
47 PF04289 DUF447: Protein of un 75.0 8.5 0.00018 34.1 6.1 51 55-107 3-53 (177)
48 PF12900 Pyridox_ox_2: Pyridox 65.7 14 0.0003 31.0 5.2 54 224-283 36-103 (143)
49 COG3467 Predicted flavin-nucle 59.9 24 0.00053 30.9 5.8 48 226-278 49-108 (166)
50 PF02669 KdpC: K+-transporting 49.7 14 0.0003 33.3 2.6 65 253-317 31-102 (188)
51 KOG4558|consensus 47.8 8.4 0.00018 35.1 0.9 33 248-280 90-123 (251)
52 TIGR00026 hi_GC_TIGR00026 deaz 47.7 1E+02 0.0022 25.3 7.2 56 224-286 33-89 (113)
53 COG2156 KdpC K+-transporting A 29.9 47 0.001 29.9 2.7 43 279-321 63-108 (190)
54 COG5015 Uncharacterized conser 29.7 1.4E+02 0.003 25.3 5.2 58 224-287 36-94 (132)
55 PF03088 Str_synth: Strictosid 28.6 1.8E+02 0.0039 22.9 5.6 44 76-119 5-56 (89)
56 PRK00315 potassium-transportin 25.7 68 0.0015 29.1 3.0 67 254-320 33-106 (193)
57 TIGR02266 gmx_TIGR02266 Myxoco 22.4 2.6E+02 0.0056 21.1 5.5 46 74-125 22-67 (96)
58 COG2808 PaiB Transcriptional r 21.9 6.2E+02 0.013 23.2 11.1 76 51-127 21-121 (209)
59 KOG0290|consensus 20.3 1.3E+02 0.0029 29.2 3.9 53 54-109 209-265 (364)
60 PF01613 Flavin_Reduct: Flavin 20.2 2.1E+02 0.0046 23.8 5.0 54 54-108 8-64 (154)
No 1
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-58 Score=405.49 Aligned_cols=210 Identities=50% Similarity=0.902 Sum_probs=202.7
Q ss_pred ChhhhccccccCCcCCCccccc-CChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEec
Q psy2497 8 DLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTN 86 (331)
Q Consensus 8 ~~~~~r~~~~~~~~~~~~~~~~-~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~ 86 (331)
.++++|.+|... ++.+.+++ .||+.+|..||++|.+ .++++|++|+|||||++|+|++|+|+|+++|+.||+||||
T Consensus 4 ~~a~~r~~y~~~--~l~~~d~~~~~P~~lF~~Wl~eA~~-~~~~ePnAm~lATvd~~G~P~~R~VLLK~~DerGfvFyTN 80 (214)
T COG0259 4 VLANIRREYTKA--GLREADLPTANPLTLFRRWLEEAIR-AEVNEPNAMTLATVDEQGRPSSRIVLLKELDERGFVFYTN 80 (214)
T ss_pred cchhhHHHhhhc--ccccccCCccCHHHHHHHHHHHHHh-cccCCCceeEEEeecCCCCceeeEEEecccCCCcEEEEec
Confidence 699999999965 68888888 9999999999999997 6799999999999999999999999999999999999999
Q ss_pred CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHH
Q psy2497 87 YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR 166 (331)
Q Consensus 87 ~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~ 166 (331)
..|+|+.+|++||+|++||+|+++.|||||+|.|++++++++++||.+||+++||++|+|+||.+|.++..|+.+.+++.
T Consensus 81 ~~S~Kg~eLa~np~Aal~F~W~~L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~ 160 (214)
T COG0259 81 YGSRKGRELAANPYAALLFPWKELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELT 160 (214)
T ss_pred cCCcchhhHhhCcceeEEecchhccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497 167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234 (331)
Q Consensus 167 ~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p 234 (331)
++|.+++ ||.|++|+||+|.|.+|||||++.+|+|+|++|.+ +++||...+++|
T Consensus 161 ~kf~~~~-iP~P~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r-------------~~g~W~~~RL~P 214 (214)
T COG0259 161 AKFADGE-IPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRR-------------DDGGWKIERLAP 214 (214)
T ss_pred HhcCCCC-CCCCCCccceEeeeeEEEEecCCCccceeeEEEee-------------cCCCeEEEecCC
Confidence 9998887 99999999999999999999999999999999998 589999999987
No 2
>KOG2586|consensus
Probab=100.00 E-value=9.3e-52 Score=362.37 Aligned_cols=216 Identities=48% Similarity=0.867 Sum_probs=200.2
Q ss_pred CCChhhhccccccCCcCCCccccc-CChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEE
Q psy2497 6 TTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF 84 (331)
Q Consensus 6 ~~~~~~~r~~~~~~~~~~~~~~~~-~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~ 84 (331)
.+||+++|..|++. .|.+..++ .||+++|++|+++|.+..+..+++.|+|+|++.||+|++|+|++++++.+||+||
T Consensus 11 ~id~~p~r~~Y~~s--sL~e~~l~~~DPv~~F~~wf~EA~~~~~~~~~~am~LsT~~~d~rvssRmvLlKgl~~~gf~fy 88 (228)
T KOG2586|consen 11 KIDIAPMRYQYMKS--SLEEIELTPSDPVELFKKWFQEAAKDPDIGEINAMTLSTADKDGRVSSRMVLLKGLDHDGFVFY 88 (228)
T ss_pred ceeechHHHhhhhh--hhhhhhcCCCChHHHHHHHHHHHhhCCCcCchhheeehhccccCCcceeeeeeecccCCCeEEE
Confidence 47899999999877 57666665 7999999999999998666778999999999999999999999999999999999
Q ss_pred ecC-CCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHH
Q psy2497 85 TNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITE 163 (331)
Q Consensus 85 T~~-~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~ 163 (331)
|+. .|+|+++|.+||+|||+|||+..++||||+|.+++++++++++||+++|+++||++|+|+||+||.+++.+..+..
T Consensus 89 tn~~~srk~kdL~~NP~Aal~Fyw~~l~rQVRveG~ve~l~~ee~e~yf~srp~~SqIga~~s~qs~vI~~re~l~k~~e 168 (228)
T KOG2586|consen 89 TNYGTSRKGKDLQENPNAALLFYWEDLNRQVRVEGIVEKLPREEAEAYFKSRPRASQIGAWASPQSEVIPDREELEKKDE 168 (228)
T ss_pred eeccccccccccccCCcceEEEeehhccceeEEEeccccCCHHHHHHHHhcCcchhhccceecCCCCccCCHHHHHHHHH
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497 164 ELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234 (331)
Q Consensus 164 ~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p 234 (331)
++.+.|.++..||.|++|++|+|.|..+||||++.+++|+|++|.+ ...++.|...+++|
T Consensus 169 ~l~~~~~~~~~IpkP~swgg~rl~P~~~EFwQg~~~rLhDR~~yr~-----------~~~d~~Wk~~rlap 228 (228)
T KOG2586|consen 169 ELTELFGDEQSIPKPDSWGGYRLVPQEFEFWQGQPDRLHDRIVYRR-----------LTVDEDWKLVRLAP 228 (228)
T ss_pred HHHHHhcccccccCCCcccceEEeeeeehhhcCCchhhhheEEEec-----------ccCCCCeeEEecCC
Confidence 9988887656699999999999999999999999999999999996 13356799988876
No 3
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=100.00 E-value=1.7e-50 Score=407.64 Aligned_cols=215 Identities=47% Similarity=0.872 Sum_probs=201.3
Q ss_pred CChhhhccccccCCcCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEec
Q psy2497 7 TDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTN 86 (331)
Q Consensus 7 ~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~ 86 (331)
+|++++|++|... .|++++++.||+++|..||++|++ .++.+|++|+|||||.+|.|++|+|++|+++++||+||||
T Consensus 329 ~~~~~~r~~y~~~--~l~~~~~~~dP~~~F~~W~~eA~~-~~~~eP~Am~LATv~~~G~P~~RtVlLk~~d~~g~~F~Tn 405 (544)
T PLN02918 329 VDISALRENYISP--ELLEEQVETDPTDQFRKWFDEAVA-AGLREPNAMALSTANKDGKPSSRMVLLKGVDKNGFVWYTN 405 (544)
T ss_pred cCHHHHHhhcccc--CCChhhcCCCHHHHHHHHHHHHHh-cCCCCCccceEEeeCCCCCeeeEEEEEeEEcCCceEEEEC
Confidence 5899999999866 589999999999999999999997 7899999999999999999999999999999999999999
Q ss_pred CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHH
Q psy2497 87 YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR 166 (331)
Q Consensus 87 ~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~ 166 (331)
.+|+|+.||++||+|+|+|||+...|||||+|+|++++++++++||.+||+++|+++|+|+||++|.+++.|+++.++++
T Consensus 406 ~~S~K~~el~~Np~aal~F~w~~l~rQVRi~G~v~~~~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~ 485 (544)
T PLN02918 406 YESQKGSDLSENPSAALLFYWEELNRQVRVEGSVQKVPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELE 485 (544)
T ss_pred CCChhHHHHHhCCcEEEEeeeccccEEEEEEEEEEECCHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCc-CCCCceEeeecC
Q psy2497 167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHE-GEDGWYYERLFP 234 (331)
Q Consensus 167 ~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~-~~~gw~f~tl~p 234 (331)
++|++++.+|+|++|+||+|.|++|||||++.+|+|+|++|.+. .. ++++|...+++|
T Consensus 486 ~~~~~~~~vp~P~~WgGy~v~P~~iEFWQgr~~RLHdR~~Y~r~----------~~~~~~~W~~~rL~P 544 (544)
T PLN02918 486 KKYSDGSVIPKPKNWGGYRLKPNLFEFWQGQQSRLHDRLQYSLQ----------EVNGKPVWKIHRLAP 544 (544)
T ss_pred HHhcCCCCCCCCCCceeEEEecCEEEECCCCCCCccceEEEEec----------CCCCCCCeEEEEeCC
Confidence 99966533899999999999999999999999999999999981 00 124599999987
No 4
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=4.5e-49 Score=394.42 Aligned_cols=216 Identities=47% Similarity=0.873 Sum_probs=200.0
Q ss_pred CChhhhccccccCCcCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEec
Q psy2497 7 TDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTN 86 (331)
Q Consensus 7 ~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~ 86 (331)
+|++++|+.|..+ .|++++++.||+++|+.||++|++ .++.+|++|+|||+|++|.|++|+|+||+++++||+||||
T Consensus 247 ~~~~~~r~~y~~~--~l~~~~~~~~P~~~f~~W~~~a~~-~~~~ep~am~LATvd~~G~P~~R~VlLk~~d~~g~~F~Tn 323 (462)
T PLN03049 247 VDIAALRENYVGP--ELLEEQVNADPIDQFKEWFDDAVA-AGLREPNAMTLATAGEDGRPSARIVLLKGVDKRGFVWYTN 323 (462)
T ss_pred cCHHHHHhhhccc--cCChhhcCCCHHHHHHHHHHHHHH-cCCCCCCeeEEEEECCCCCeeEEEEEEeEEcCCcEEEEEC
Confidence 5899999999866 589999999999999999999997 7899999999999999999999999999999999999999
Q ss_pred CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHH
Q psy2497 87 YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR 166 (331)
Q Consensus 87 ~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~ 166 (331)
.+|+|++||++||+|+|+|||+...|||||+|+|++++++++++||.++|+++|+++|+|+||+++.+++.++....++.
T Consensus 324 ~~S~K~~eL~~Np~aal~F~w~~~~rQvRv~G~a~~~~~~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~ 403 (462)
T PLN03049 324 YDSRKAHELSANPKASLVFYWDGLHRQVRVEGSVEKVSEEESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELE 403 (462)
T ss_pred CCCHHHHHHhhCCcEEEEeecCCCCEEEEEEEEEEECCHHHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988898
Q ss_pred HhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497 167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234 (331)
Q Consensus 167 ~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p 234 (331)
.+|.++..+|+|++|++|+|+|++|||||++.+++|+|++|.+. . ..++++|...+++|
T Consensus 404 ~~~~~~~~~p~p~~w~g~~v~p~~iEfwq~~~~rlHdR~~y~~~-~--------~~~~~~W~~~rl~P 462 (462)
T PLN03049 404 AKYADSSAIPKPKHWGGYRLKPELIEFWQGRESRLHDRLQYTRE-E--------INGKSVWKIDRLAP 462 (462)
T ss_pred HhhccCCCCCCCCceEEEEEEeeEEEEccCCCCCCeeEEEEEec-C--------CCCCCCEEEEEeCC
Confidence 88855334899999999999999999999999999999999971 0 01234699999987
No 5
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=100.00 E-value=2.9e-47 Score=347.67 Aligned_cols=212 Identities=46% Similarity=0.853 Sum_probs=197.4
Q ss_pred CCChhhhccccccCCcCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEe
Q psy2497 6 TTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFT 85 (331)
Q Consensus 6 ~~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T 85 (331)
.+++..+|++|.++ .|.+.++|.||+.+|..||++|++ .++.++++++|||+|.+|.|++|+|+++.+++++|+|||
T Consensus 6 ~~~~~~~~~~~~~~--~l~~~~~~~~P~~~f~~W~~~a~~-~~~~~~~~~~LaTvd~~G~P~~R~v~lr~~~~~~l~F~T 82 (217)
T TIGR00558 6 PIIIANIRYEYTKG--GLNEKDLPDDPIDLFEIWFNEAIE-ARLTEPNAMTLSTVDESGRPSSRMVLLKELDERGFVFYT 82 (217)
T ss_pred CcChHHHhhhcccc--cCChhhcCCCHHHHHHHHHHHHHh-cCCCCCceEEEEEECCCCCEEEEEEEEEEECCCcEEEEE
Confidence 46788899999876 588889999999999999999997 788999999999999999999999999999988999999
Q ss_pred cCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHH
Q psy2497 86 NYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEEL 165 (331)
Q Consensus 86 ~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~ 165 (331)
+.+|+|+.||++||+|+|||||+...+||||+|+|++++++++++||.++|..+|+.+|+++||+++.+++.|......+
T Consensus 83 ~~~S~K~~eL~~np~v~l~f~~~~~~~qvrv~G~a~~~~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~ 162 (217)
T TIGR00558 83 NYGSRKGHQIETNPNAALVFFWPDLERQVRVEGKVEKLPREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKN 162 (217)
T ss_pred CCCChHHHHHHhCCcEEEEEEeCCCCEEEEEEEEEEECCHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred HHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497 166 RQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234 (331)
Q Consensus 166 ~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p 234 (331)
.+++++++ +|+|++||||+|.|++||||+++.+++|+|++|.+ +++||....++|
T Consensus 163 ~~~~~~~~-~p~p~~f~~~~l~p~~vEf~~l~~~r~H~R~~y~~-------------~~~~W~~~~l~P 217 (217)
T TIGR00558 163 TEKFEDAE-IPRPDYWGGYRVVPEEIEFWQGRPSRLHDRFVYRR-------------ENDPWKRVRLAP 217 (217)
T ss_pred HhhccCCC-CCCCCceEEEEEECCEEEEccCCCCCCceEEEEEe-------------cCCCEEEEEeCC
Confidence 77776554 88999999999999999999999889999999997 467899888776
No 6
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=2.4e-44 Score=323.81 Aligned_cols=193 Identities=53% Similarity=0.984 Sum_probs=180.6
Q ss_pred cccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEE
Q psy2497 27 DIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY 106 (331)
Q Consensus 27 ~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~ 106 (331)
++|.||+++|+.||++|++ .+..++++++|||||.||.|++|+|+++++++++|+|||+.+|+|++||++||+|+||||
T Consensus 3 ~~~~~P~~~~~~wl~~a~~-~~~~~~~~~~lATv~~dG~P~~R~V~lr~~~~~~l~f~T~~~S~K~~~l~~np~val~~~ 81 (195)
T PRK05679 3 DLPAEPLALFERWLAEAVK-AELNDPNAMTLATVDEDGRPSQRIVLLKGFDERGFVFYTNYESRKGRQLAANPKAALLFP 81 (195)
T ss_pred cccCCHHHHHHHHHHHHHh-cCCCCCceEEEEeeCCCCCEEEEEEEEEEECCCeEEEEeCCCCHHHHHHhhCCcEEEEEe
Confidence 4889999999999999997 678899999999999999999999999999988999999999999999999999999999
Q ss_pred eCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEE
Q psy2497 107 WEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186 (331)
Q Consensus 107 ~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v 186 (331)
|+...+||||+|+|+++++++++++|.++|.++++.+|+++||++|.+++.++.....+...|.+.. +++|++||||+|
T Consensus 82 ~~~~~~qvrv~G~a~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~~-~~~p~~f~~~~l 160 (195)
T PRK05679 82 WKSLERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQGE-VPRPPHWGGYRV 160 (195)
T ss_pred cCCCCEEEEEEEEEEEeCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCCC-CCCCCccEEEEE
Confidence 9999999999999999999999999999999999999999999999999999887777777775444 789999999999
Q ss_pred eceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497 187 IPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234 (331)
Q Consensus 187 ~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p 234 (331)
.|++||||+++.+++|+|++|.+ +++||.-.+++|
T Consensus 161 ~p~~veflql~~~r~H~R~~y~~-------------~~~~W~~~~l~P 195 (195)
T PRK05679 161 VPESIEFWQGRPSRLHDRILYRR-------------DDGGWKIERLAP 195 (195)
T ss_pred ECCEEEEcCCCCCCCcceEEEEE-------------CCCCEEEEEeCC
Confidence 99999999998888999999997 467899888876
No 7
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-41 Score=299.29 Aligned_cols=117 Identities=44% Similarity=0.709 Sum_probs=112.2
Q ss_pred CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497 198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 277 (331)
Q Consensus 198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~ 277 (331)
.|+|+.|+++.| +.|+.||+||||+.|+|| + +|++||+|||+|||++|+|||||+|+|++|+++
T Consensus 57 ~G~P~~R~VLLK-----------~~DerGfvFyTN~~S~Kg-~----eLa~np~Aal~F~W~~L~RQVrv~G~ve~vs~e 120 (214)
T COG0259 57 QGRPSSRIVLLK-----------ELDERGFVFYTNYGSRKG-R----ELAANPYAALLFPWKELERQVRVEGRVERVSDE 120 (214)
T ss_pred CCCceeeEEEec-----------ccCCCcEEEEeccCCcch-h----hHhhCcceeEEecchhccceEEEeeeeeeCCHH
Confidence 578999999999 689999999999999996 4 699999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497 278 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 331 (331)
Q Consensus 278 es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~ 331 (331)
|||+||++||++||||||||+||.+|+||.+|++++++++++|+.++ ||+|+|
T Consensus 121 esd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~-iP~P~~ 173 (214)
T COG0259 121 ESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGE-IPRPPH 173 (214)
T ss_pred HHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCC-CCCCCC
Confidence 99999999999999999999999999999999999999999999775 999986
No 8
>KOG2586|consensus
Probab=100.00 E-value=5.9e-36 Score=262.83 Aligned_cols=118 Identities=40% Similarity=0.665 Sum_probs=112.1
Q ss_pred CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeec-CCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497 198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLF-PQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD 276 (331)
Q Consensus 198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~-pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~ 276 (331)
.+++..|+++.| +.+.+||+||||+ .|+|| ++|++||+|||+|||+.|.|||||+|.|++|++
T Consensus 67 d~rvssRmvLlK-----------gl~~~gf~fytn~~~srk~-----kdL~~NP~Aal~Fyw~~l~rQVRveG~ve~l~~ 130 (228)
T KOG2586|consen 67 DGRVSSRMVLLK-----------GLDHDGFVFYTNYGTSRKG-----KDLQENPNAALLFYWEDLNRQVRVEGIVEKLPR 130 (228)
T ss_pred cCCcceeeeeee-----------cccCCCeEEEeeccccccc-----cccccCCcceEEEeehhccceeEEEeccccCCH
Confidence 577889999999 5889999999999 99996 479999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497 277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 331 (331)
Q Consensus 277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~ 331 (331)
+|+++||++||++||||||+|+||.||++|++|+++.+++.+.|.+++.||+|++
T Consensus 131 ee~e~yf~srp~~SqIga~~s~qs~vI~~re~l~k~~e~l~~~~~~~~~IpkP~s 185 (228)
T KOG2586|consen 131 EEAEAYFKSRPRASQIGAWASPQSEVIPDREELEKKDEELTELFGDEQSIPKPDS 185 (228)
T ss_pred HHHHHHHhcCcchhhccceecCCCCccCCHHHHHHHHHHHHHHhcccccccCCCc
Confidence 9999999999999999999999999999999999999999999987678999974
No 9
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=100.00 E-value=3.2e-32 Score=275.15 Aligned_cols=132 Identities=35% Similarity=0.622 Sum_probs=118.1
Q ss_pred CCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEE
Q psy2497 175 VPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASL 254 (331)
Q Consensus 175 ~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal 254 (331)
++.|...++=.+ ...|+++.|+++.| +++++||+|+|++.|+|+ + +|++||+|||
T Consensus 368 ~~eP~Am~LATv---------~~~G~P~~RtVlLk-----------~~d~~g~~F~Tn~~S~K~-~----el~~Np~aal 422 (544)
T PLN02918 368 LREPNAMALSTA---------NKDGKPSSRMVLLK-----------GVDKNGFVWYTNYESQKG-S----DLSENPSAAL 422 (544)
T ss_pred CCCCccceEEee---------CCCCCeeeEEEEEe-----------EEcCCceEEEECCCChhH-H----HHHhCCcEEE
Confidence 566665444333 34578999999999 577899999999999996 3 7999999999
Q ss_pred EeecCCCCceEEEEEEeeEcCHHHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497 255 AFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 331 (331)
Q Consensus 255 ~f~W~~l~RQVri~G~v~~~~~~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~ 331 (331)
+|||+++.|||||+|.|++++++||++||++||++|||+||||+||++|+||++|++++++++++|+++++||+|+|
T Consensus 423 ~F~w~~l~rQVRi~G~v~~~~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~ 499 (544)
T PLN02918 423 LFYWEELNRQVRVEGSVQKVPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKN 499 (544)
T ss_pred EeeeccccEEEEEEEEEEECCHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999976434999986
No 10
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=99.96 E-value=1.3e-29 Score=254.33 Aligned_cols=119 Identities=40% Similarity=0.683 Sum_probs=111.7
Q ss_pred CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497 197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD 276 (331)
Q Consensus 197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~ 276 (331)
..|+|+.|+++.| +++++||+|+|++.|+|+ + +|++||+|||+|||+++.|||||+|.|+++++
T Consensus 299 ~~G~P~~R~VlLk-----------~~d~~g~~F~Tn~~S~K~-~----eL~~Np~aal~F~w~~~~rQvRv~G~a~~~~~ 362 (462)
T PLN03049 299 EDGRPSARIVLLK-----------GVDKRGFVWYTNYDSRKA-H----ELSANPKASLVFYWDGLHRQVRVEGSVEKVSE 362 (462)
T ss_pred CCCCeeEEEEEEe-----------EEcCCcEEEEECCCCHHH-H----HHhhCCcEEEEeecCCCCEEEEEEEEEEECCH
Confidence 3578999999999 577889999999999996 3 79999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497 277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 331 (331)
Q Consensus 277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~ 331 (331)
++|++||++||++|||+||||+||++|++|+.|++++++++++|.+++++|+|+|
T Consensus 363 ~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~ 417 (462)
T PLN03049 363 EESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKH 417 (462)
T ss_pred HHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999965457999985
No 11
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=99.89 E-value=4.2e-23 Score=185.85 Aligned_cols=118 Identities=43% Similarity=0.676 Sum_probs=108.7
Q ss_pred CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497 197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD 276 (331)
Q Consensus 197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~ 276 (331)
..|.|+.|.+..+ +.+++|+.|+|+..|+|+ ++|++||+|||+|||+.+.|||||+|.|+.+++
T Consensus 37 ~dG~P~~R~V~lr-----------~~~~~~l~f~T~~~S~K~-----~~l~~np~val~~~~~~~~~qvrv~G~a~~~~~ 100 (195)
T PRK05679 37 EDGRPSQRIVLLK-----------GFDERGFVFYTNYESRKG-----RQLAANPKAALLFPWKSLERQVRVEGRVEKVSA 100 (195)
T ss_pred CCCCEEEEEEEEE-----------EECCCeEEEEeCCCCHHH-----HHHhhCCcEEEEEecCCCCEEEEEEEEEEEeCH
Confidence 3578999999987 356788999999999996 379999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497 277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 331 (331)
Q Consensus 277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~ 331 (331)
+++++||.+||+++|+++|+|+||++|.++++|+++++++..+|.. .++|+|++
T Consensus 101 ~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~-~~~~~p~~ 154 (195)
T PRK05679 101 EESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQ-GEVPRPPH 154 (195)
T ss_pred HHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccC-CCCCCCCc
Confidence 9999999999999999999999999999999999999999999964 35888874
No 12
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=99.89 E-value=8e-23 Score=186.85 Aligned_cols=117 Identities=38% Similarity=0.639 Sum_probs=107.6
Q ss_pred CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497 198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 277 (331)
Q Consensus 198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~ 277 (331)
.|.++.|++..+ ..+++|+.|+|+..|+|+ .+|++||+|+|+|||+.+.+||||+|.|+.++++
T Consensus 60 ~G~P~~R~v~lr-----------~~~~~~l~F~T~~~S~K~-----~eL~~np~v~l~f~~~~~~~qvrv~G~a~~~~~~ 123 (217)
T TIGR00558 60 SGRPSSRMVLLK-----------ELDERGFVFYTNYGSRKG-----HQIETNPNAALVFFWPDLERQVRVEGKVEKLPRE 123 (217)
T ss_pred CCCEEEEEEEEE-----------EECCCcEEEEECCCChHH-----HHHHhCCcEEEEEEeCCCCEEEEEEEEEEECCHH
Confidence 577999988887 356678999999999996 3799999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497 278 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 331 (331)
Q Consensus 278 es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~ 331 (331)
++++||++||+.||+.+|+|+||++|.++++|++++.++.+++.++ ++|+|++
T Consensus 124 ~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~-~~p~p~~ 176 (217)
T TIGR00558 124 ESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFEDA-EIPRPDY 176 (217)
T ss_pred HHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccCC-CCCCCCc
Confidence 9999999999999999999999999999999999999999998644 5898875
No 13
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=99.79 E-value=3.4e-19 Score=143.98 Aligned_cols=90 Identities=23% Similarity=0.360 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCCCCCCceEEEEeec-CCCCeeEEEEEEEEeeCC------eEEEEecCCCcchhhhh-cCCcEEEEEE
Q psy2497 35 LFESWFHEANNTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKN------GFVFFTNYNSRKGNELA-ENPQASLAFY 106 (331)
Q Consensus 35 ~f~~Wl~~A~~~~~~~e~~~~~LATvd-~dG~P~~R~V~~r~~~~~------gl~F~T~~~S~K~~eL~-~np~val~f~ 106 (331)
.|+.-|+++++.......++++|||+| ++|.|++||||+|++..+ -|.|+||.+|+|+.||. .||+|++|||
T Consensus 3 ~Wr~~L~~~~~~~~~~~~~~~~LATv~~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~ 82 (100)
T PF12766_consen 3 PWRQLLERALKKNRSHPFRYFQLATVDPPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFW 82 (100)
T ss_dssp TCHHHHHHHHHHTTTCGGGCEEEEEEE-TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEE
T ss_pred ccHHHHHHHHhhcCCCCCceeEEEEecCCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEE
Confidence 355557777752134467889999999 799999999999999986 49999999999999999 9999999999
Q ss_pred eCCCCeEEEEEEEEEecC
Q psy2497 107 WEPLKRSVRIEGHVEKTS 124 (331)
Q Consensus 107 ~~~~~~qvri~G~a~~~~ 124 (331)
++....|+||+|+|.++.
T Consensus 83 ~~~~~~Q~Ri~G~a~ii~ 100 (100)
T PF12766_consen 83 FPETREQFRIRGRASIIG 100 (100)
T ss_dssp ECCCTEEEEEEEEEEEE-
T ss_pred eCCccEEEEEEEEEEEEC
Confidence 999999999999999863
No 14
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=99.79 E-value=2.7e-19 Score=151.22 Aligned_cols=117 Identities=23% Similarity=0.412 Sum_probs=100.3
Q ss_pred CCceEEEEeecCCCCeeEEEEEEEEeeC-CeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchh
Q psy2497 51 EANAMFIATSTKNGIPSGRMVLLKSYGK-NGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESD 129 (331)
Q Consensus 51 e~~~~~LATvd~dG~P~~R~V~~r~~~~-~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~ 129 (331)
...+++|+|+..+|.||+|+|.+..-.. ..|||+|+..|+|+.+|+.||+|+|+|......-.|.|+|+|+++.
T Consensus 16 ~~kv~~l~tv~~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~~~fv~v~Gtael~~----- 90 (145)
T COG3871 16 GSKVGMLATVQENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDHDAFVEVSGTAELVE----- 90 (145)
T ss_pred hCceEEEEEecCCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCCcceEEEEEEEEeec-----
Confidence 5678999999999999999999765443 3599999999999999999999999999988888999999999854
Q ss_pred HHHhcCCccccceeecCCCCCCCCCHHHHHHHHH-HHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCC
Q psy2497 130 DYFQSRPYASKIGAIASDQSRPCESRDQMSKITE-ELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSD 199 (331)
Q Consensus 130 ~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~-~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~ 199 (331)
|++.+++.|. .++.||+.|. ..|++|+|+|.|+.++||+.++.
T Consensus 91 ------------------------dra~~d~~W~~~~~~wFe~Gk---edP~l~~Lkv~~e~i~yw~~~~~ 134 (145)
T COG3871 91 ------------------------DRAKIDELWTSVLEAWFEQGK---EDPDLTMLKVTAEDIDYWNSGDN 134 (145)
T ss_pred ------------------------cHHHHHHhhhhhHHHHHhcCC---CCCCeEEEEEchhHhHHHhccCC
Confidence 6667777776 4688998775 34679999999999999987543
No 15
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.62 E-value=4.7e-15 Score=115.27 Aligned_cols=77 Identities=32% Similarity=0.416 Sum_probs=71.5
Q ss_pred CCceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCC-CCeEEEEEEEEEecCCcc
Q psy2497 51 EANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEP-LKRSVRIEGHVEKTSDKE 127 (331)
Q Consensus 51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~-~~~qvri~G~a~~~~~~~ 127 (331)
+.++++|||++.||.|++|+|.+...+++ .|||+|+..|.|+++|++||+|+|+|+++. ..++|+|.|+|++++++|
T Consensus 11 ~~~~~~laTv~~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~~~~~~v~~~G~a~~~~d~E 89 (89)
T PF01243_consen 11 ESKYCVLATVDEDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPEGTRRGVRVSGTAEILTDEE 89 (89)
T ss_dssp STSEEEEEEEETTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETTTTTEEEEEEEEEEEESHHH
T ss_pred CCCEEEEEEECCCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcCcCceEEEEEEEEEEEcCCC
Confidence 56889999999999999999999876665 699999999999999999999999999999 899999999999998754
No 16
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.62 E-value=9.3e-15 Score=119.86 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=64.2
Q ss_pred EEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCCC-eEEEEEEEEEecCCcc
Q psy2497 56 FIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPLK-RSVRIEGHVEKTSDKE 127 (331)
Q Consensus 56 ~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~~-~qvri~G~a~~~~~~~ 127 (331)
+|||++++|.|++++|.+....++ .|||+|+..|+|+++|++||+|+|+|+++... ++++|+|+|+++.+.+
T Consensus 1 ~LaTv~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~~v~i~G~a~~v~d~~ 74 (117)
T TIGR03618 1 VLATIRADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPYRYVEVEGTAELVEDPD 74 (117)
T ss_pred CEEEECCCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCCccEEEEEEEEEEecCCc
Confidence 599999999999999998654444 59999999999999999999999999998866 8999999999987643
No 17
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.59 E-value=8.2e-15 Score=123.73 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=68.2
Q ss_pred CCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-CeEEEEEEEEEecCCc
Q psy2497 49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-KRSVRIEGHVEKTSDK 126 (331)
Q Consensus 49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-~~qvri~G~a~~~~~~ 126 (331)
+.+.++++|||+++||.|++|||++. .+++.|||+|+.+|.|+++|++||+|+|+|+++.. ..+|+|+|+|+++.+.
T Consensus 11 L~~~~~~~LaT~~~dG~P~~~P~~~~-~~d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~~~~v~v~G~a~i~~d~ 88 (130)
T TIGR03667 11 LREESIVWLTTVRRSGQPQPVPVWFL-WDGTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGGDVVVFTGTAEVVADA 88 (130)
T ss_pred hcCCCeEEEEEECCCCceEEEEEEEE-EECCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCCceEEEEEEEEEEeCCc
Confidence 34678899999999999999999994 46667999999999999999999999999988654 4899999999998765
No 18
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.6e-13 Score=120.96 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCCceEEEEeecCC-CCeeEEEEEEEEee-CC----eEEEEecCCCcchhhhhcCC-----------cEEEEEEeCCCCe
Q psy2497 50 IEANAMFIATSTKN-GIPSGRMVLLKSYG-KN----GFVFFTNYNSRKGNELAENP-----------QASLAFYWEPLKR 112 (331)
Q Consensus 50 ~e~~~~~LATvd~d-G~P~~R~V~~r~~~-~~----gl~F~T~~~S~K~~eL~~np-----------~val~f~~~~~~~ 112 (331)
.-+.+++||||+.. |.|+.|||++|++- .| -|.|.||.+|.|+.||...| ....|||+|.+.+
T Consensus 21 ~~~~yfQlATv~~~~~~PrnRTVvfRgFl~~D~~tn~L~F~TD~rS~Ki~ei~~qp~~~~~s~~~~~~fEaC~yfP~T~e 100 (245)
T COG5135 21 EPFVYFQLATVDELTNKPRNRTVVFRGFLFHDKRTNVLTFNTDMRSSKITEIFIQPNSNNSSDSKTPFFEACFYFPETWE 100 (245)
T ss_pred ccceeEEEEeecccCCCCccceEEEeeeeecccccceEEEecchhhhhhhHHhhccccCCCCCCCccHHHHHhcccchhh
Confidence 45677999999975 99999999999986 33 38999999999999999888 7889999999999
Q ss_pred EEEEEEEEEecCCcchh
Q psy2497 113 SVRIEGHVEKTSDKESD 129 (331)
Q Consensus 113 qvri~G~a~~~~~~~~~ 129 (331)
|+||+|.+..++.+.+.
T Consensus 101 Q~RisGQ~~l~s~~~~~ 117 (245)
T COG5135 101 QYRISGQCFLISKQFKY 117 (245)
T ss_pred heEeeeeEEEEchhhcC
Confidence 99999999888765443
No 19
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.34 E-value=1.1e-11 Score=105.10 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCC-eEEEEEEEEEecCCcc
Q psy2497 49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLK-RSVRIEGHVEKTSDKE 127 (331)
Q Consensus 49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~-~qvri~G~a~~~~~~~ 127 (331)
+.+.++++|+|++.||.|+++||.+. .+++.|||+|...++|+++|++||+|++++...... ..|.|+|+|+++.+++
T Consensus 9 L~~~~~~~LaT~~~dG~P~~~Pv~~~-~d~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~~~~v~v~G~A~~v~~~e 87 (132)
T TIGR03666 9 LARARYALLTTFRKDGTPVPTPVWAA-VDGDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGRPTGPVVPGRARILDGAE 87 (132)
T ss_pred hccCcEEEEEEECCCCcEEEEEEEEE-EECCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCCEeEEEEEEEEEEEcchh
Confidence 45788999999999999999999994 566679999999999999999999999999776543 5699999999986555
Q ss_pred hhHHH
Q psy2497 128 SDDYF 132 (331)
Q Consensus 128 ~~~~~ 132 (331)
....|
T Consensus 88 ~~~~~ 92 (132)
T TIGR03666 88 TARAR 92 (132)
T ss_pred HHHHH
Confidence 54443
No 20
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.21 E-value=2.5e-10 Score=97.93 Aligned_cols=79 Identities=23% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCCCceEEEEeecCCCCeeEEEEEEEEe------eCCeEEEEe------cCCCcchhhhhcCCcEEEEEEeCCC----Ce
Q psy2497 49 IIEANAMFIATSTKNGIPSGRMVLLKSY------GKNGFVFFT------NYNSRKGNELAENPQASLAFYWEPL----KR 112 (331)
Q Consensus 49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~------~~~gl~F~T------~~~S~K~~eL~~np~val~f~~~~~----~~ 112 (331)
+.+.+++.|||+++||.|++-||++... +++.|||++ ...++|.++|++||+|++++..... .+
T Consensus 9 L~~~~~~~LaTv~~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~~~~~~~~~ 88 (141)
T TIGR03668 9 FAQARVARLATVSPDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRYDDDWTRLW 88 (141)
T ss_pred HccCCEEEEEEECCCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecCCCCccceE
Confidence 3467889999999999999999998643 145689884 4567999999999999998753221 24
Q ss_pred EEEEEEEEEecCCcc
Q psy2497 113 SVRIEGHVEKTSDKE 127 (331)
Q Consensus 113 qvri~G~a~~~~~~~ 127 (331)
.|.++|+|+++.+++
T Consensus 89 ~v~v~G~a~~~~d~~ 103 (141)
T TIGR03668 89 WVRADGRAEILRPGE 103 (141)
T ss_pred EEEEEEEEEEecCCc
Confidence 599999999987653
No 21
>KOG4558|consensus
Probab=99.15 E-value=4.9e-10 Score=99.45 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=66.3
Q ss_pred HHHhhcCCCCCCCceEEEEeec-CCCCeeEEEEEEEEeeCC-----eEEEEecCCCcchhhhhcC--------------C
Q psy2497 40 FHEANNTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKN-----GFVFFTNYNSRKGNELAEN--------------P 99 (331)
Q Consensus 40 l~~A~~~~~~~e~~~~~LATvd-~dG~P~~R~V~~r~~~~~-----gl~F~T~~~S~K~~eL~~n--------------p 99 (331)
|++-+...++--+.+++|||++ -.+.|+.|||++|++.-. .+.|.|+.+|.|+.+.-.. |
T Consensus 13 ~~~~~~ns~~~hs~yfQlAT~~~l~~~PrnRTVvfRgF~~h~~R~~~v~~ntdlrssk~~~sf~~~~~a~~~~~~~~~~P 92 (251)
T KOG4558|consen 13 LKENVDNSGVIHSEYFQLATLPTLEIYPRNRTVVFRGFVWHKPRPDDVLANTDLRSSKDIASFKAAEIAEQQKNTFPSGP 92 (251)
T ss_pred HHhhhccCCccccceEEEeecccccCCcccceEEEecceecCCCCcceeeeccchhhhhhhhhhchhhhccccccccCCC
Confidence 4443332333345669999999 689999999999998632 3899999999998764332 2
Q ss_pred c-EEEEEEeCCCCeEEEEEEEEEecCC
Q psy2497 100 Q-ASLAFYWEPLKRSVRIEGHVEKTSD 125 (331)
Q Consensus 100 ~-val~f~~~~~~~qvri~G~a~~~~~ 125 (331)
- ..+|||+|.+.+|+||+|.+..++.
T Consensus 93 ~~femC~yfp~TweQ~RisGqi~~it~ 119 (251)
T KOG4558|consen 93 IPFEMCGYFPKTWEQIRISGQIWLITP 119 (251)
T ss_pred cccceeeeechhhhheEecceEEEEcc
Confidence 2 6799999999999999999998853
No 22
>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1.4.3.5 from EC) is an enzyme that is involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. The enzyme requires the presence of flavin mononucleotide (FMN) as a cofactor, although there is some evidence that coenzyme F420 may perform this role in some species []. The sequences of the enzyme from bacterial (genes pdxH or fprA) [] and fungal (gene PDX3) [] sources show that this protein has been highly conserved throughout evolution. PdxH is evolutionary related [] to one of the enzymes in the phenazine biosynthesis protein pathway, phzD (also known as phzG). This entry represents one of the two dimerisation regions of the protein, located at the edge of the dimer interface, at the C terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In P21159 from SWISSPROT, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the FMN molecule []. ; GO: 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0055114 oxidation-reduction process; PDB: 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A 1JNW_A 1G78_A 1TY9_A 1CI0_A 1NRG_A ....
Probab=99.02 E-value=5.8e-10 Score=75.99 Aligned_cols=42 Identities=57% Similarity=1.286 Sum_probs=37.8
Q ss_pred eEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497 181 WGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234 (331)
Q Consensus 181 ~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p 234 (331)
|+||+|.|++|||||+..+++|+|++|.+ ..+++|...+++|
T Consensus 1 WgGy~l~P~~iEFWqg~~~RlHdR~~y~r------------~~~~~W~~~rL~P 42 (42)
T PF10590_consen 1 WGGYRLVPEEIEFWQGRPDRLHDRIRYTR------------DEDGGWTKERLQP 42 (42)
T ss_dssp EEEEEEEECEEEEEEEETTSEEEEEEEEE------------ETTTCEEEEEE-T
T ss_pred CCeEEEEcCEEEEeCCCCCCCEEEEEEEe------------cCCCCEEEEEEcC
Confidence 89999999999999999999999999998 3367899999987
No 23
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.5e-08 Score=83.32 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhH
Q psy2497 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDD 130 (331)
Q Consensus 51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~ 130 (331)
+.....|||++ +|.|++|+.-.--.+.+.|||.|..+..-++||.+||.|++|-+... ...|||+|.|+-+.+-+...
T Consensus 10 en~~~~laTve-~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kd-g~~vrlrg~a~f~~nielkk 87 (132)
T COG5015 10 ENKSVALATVE-DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKD-GVMVRLRGRAEFVENIELKK 87 (132)
T ss_pred hCCcEEEEEcc-CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCC-ceEEEEeeeEEeccchHHHH
Confidence 55568899999 99999999988777778899999999999999999999999999755 57899999999876654433
Q ss_pred -HHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCC
Q psy2497 131 -YFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQS 198 (331)
Q Consensus 131 -~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~ 198 (331)
.+...| -+..-|+ .++-|-|.++-+.-.+.+-.+..+
T Consensus 88 ~ale~yP---------------------------~Lkeiy~----tddnpifevfyld~~e~~m~df~g 125 (132)
T COG5015 88 LALEIYP---------------------------VLKEIYP----TDDNPIFEVFYLDSGEGEMYDFSG 125 (132)
T ss_pred HHhhhch---------------------------hhHhhcc----CCCCCEEEEEEEeeccEEEEEecC
Confidence 333222 1222343 223355888888877776665543
No 24
>PRK06733 hypothetical protein; Provisional
Probab=98.52 E-value=6.7e-07 Score=77.31 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=61.6
Q ss_pred ceEEEEeec-CCCCeeEEEEEEEEe-eCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecC
Q psy2497 53 NAMFIATST-KNGIPSGRMVLLKSY-GKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTS 124 (331)
Q Consensus 53 ~~~~LATvd-~dG~P~~R~V~~r~~-~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~ 124 (331)
..+.|+|+| +||.|++.++..... |++.|+|--+..|.=+.+|++||+|+|+++.++.. +.|+|++++++
T Consensus 21 ~~~~laTv~kedG~Pnv~~Iswv~a~d~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~~--yqIkG~a~i~~ 92 (151)
T PRK06733 21 RIVTLATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHNPGVVLTIIANESV--YSISGAAEILT 92 (151)
T ss_pred ceEEEEEEccCCCceeEEEEEEEEEcCCCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCcE--EEEEEEEEEEe
Confidence 568999999 599999999887544 55679999999999999999999999999998765 99999999865
No 25
>PRK03467 hypothetical protein; Provisional
Probab=98.48 E-value=2.3e-06 Score=73.51 Aligned_cols=83 Identities=14% Similarity=0.299 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCe--EEEEecCCCcchhhhhcCCcEEEEEEeCCC-
Q psy2497 34 KLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNG--FVFFTNYNSRKGNELAENPQASLAFYWEPL- 110 (331)
Q Consensus 34 ~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~g--l~F~T~~~S~K~~eL~~np~val~f~~~~~- 110 (331)
.-+.+||. ..++++|||.+.+ .|.+-.+.+ -+|+++ |||.|+..|++++.+.+||+|+.+..-...
T Consensus 8 ~~I~~fl~---------~~hvltLa~~~~~-~~w~A~cFY-~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~ 76 (144)
T PRK03467 8 TAISRWLA---------KQHVVTLCVGQEG-ELWCANCFY-VFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKT 76 (144)
T ss_pred HHHHHHHH---------hCcEEEEEEEcCC-CcceEEEEE-EEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcc
Confidence 45667774 5678999999965 567777754 567664 899999999999999999999999985442
Q ss_pred ---CeEEEEEEEEEecCCcc
Q psy2497 111 ---KRSVRIEGHVEKTSDKE 127 (331)
Q Consensus 111 ---~~qvri~G~a~~~~~~~ 127 (331)
-+.|.++|+++.+++++
T Consensus 77 v~~I~GvQ~~G~~~~l~~~e 96 (144)
T PRK03467 77 VALIRGVQFKGEIRRLEGEE 96 (144)
T ss_pred hhhceEEEEEEEEEecChhH
Confidence 36788999999987654
No 26
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=98.32 E-value=1.5e-06 Score=67.08 Aligned_cols=65 Identities=28% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCCCccceEEEeccCCCCCCCCCCCcCCC--CceEeeecCCCccccccchhHhhCCceEEEeecCC-CCceEEEEEEeeE
Q psy2497 197 QSDRVHDRIVFKRPVPGEPLGPHSHEGED--GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-LKRSVRIEGHVEK 273 (331)
Q Consensus 197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~--gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-l~RQVri~G~v~~ 273 (331)
..+.|+.|.+... ..++ .+.|.++..|+|. ++|.+||+|+|+|.++. ..+.|+|.|+|+.
T Consensus 22 ~dG~P~~~~v~~~------------~~~~~~~i~~~t~~~~~k~-----~nl~~np~v~l~~~~~~~~~~~v~~~G~a~~ 84 (89)
T PF01243_consen 22 EDGRPHASPVWFV------------YDDDDNTIYFATNPGSRKV-----RNLRRNPRVSLLFCDPEGTRRGVRVSGTAEI 84 (89)
T ss_dssp TTSEEEEEEEEEE------------EECTTTEEEEEEETTSHHH-----HHHHHSTEEEEEEEETTTTTEEEEEEEEEEE
T ss_pred CCCCEEEEEEeee------------cCCceeEEEEeecCCCCch-----hhCccCCeEEEEEEEcCcCceEEEEEEEEEE
Confidence 4566888877765 2233 5899999999996 37999999999999999 9999999999999
Q ss_pred cCHHH
Q psy2497 274 TSDKE 278 (331)
Q Consensus 274 ~~~~e 278 (331)
++++|
T Consensus 85 ~~d~E 89 (89)
T PF01243_consen 85 LTDEE 89 (89)
T ss_dssp ESHHH
T ss_pred EcCCC
Confidence 99987
No 27
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=98.29 E-value=1.2e-05 Score=68.41 Aligned_cols=72 Identities=24% Similarity=0.203 Sum_probs=59.7
Q ss_pred CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-------------CeEEEEE
Q psy2497 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-------------KRSVRIE 117 (331)
Q Consensus 51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-------------~~qvri~ 117 (331)
+..++.||+++ +|.|.+.||.+- ++++.|||+|...++|..-|++|| |+++++.-.. -+-|.+.
T Consensus 11 ~~~~g~la~~~-~~~Py~vP~~f~-~~~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~~~~~y~SVi~~ 87 (143)
T PF12900_consen 11 RAPVGRLAFVD-DGYPYIVPVNFV-YDGGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACSFSMNYRSVIVF 87 (143)
T ss_dssp H-SEEEEEEEE-TTEEEEEEEEEE-EETTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGGEEEEEEEEEEE
T ss_pred hCCEEEEEEEe-CCEEEEEEEEEE-EECCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCcCcceEEEEEEE
Confidence 45678999999 788999999985 667789999999999999999999 9999985211 2569999
Q ss_pred EEEEecCC
Q psy2497 118 GHVEKTSD 125 (331)
Q Consensus 118 G~a~~~~~ 125 (331)
|+++.+++
T Consensus 88 G~~~~v~d 95 (143)
T PF12900_consen 88 GRAEEVED 95 (143)
T ss_dssp EEEEEEHS
T ss_pred EEEEEeCC
Confidence 99999754
No 28
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=98.13 E-value=4.9e-06 Score=67.89 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCC-ceEEEEEEeeEcCH
Q psy2497 198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLK-RSVRIEGHVEKTSD 276 (331)
Q Consensus 198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~-RQVri~G~v~~~~~ 276 (331)
.+.|+.+.+.... ..+++.+.|+|...|+|. ++|+.||+|||+|+++... ++|+|+|.++.+++
T Consensus 8 ~G~P~~~pv~~~~----------~~~~~~l~f~t~~~s~k~-----~~l~~np~v~l~~~~~~~~~~~v~i~G~a~~v~d 72 (117)
T TIGR03618 8 DGRPQLSPVWFGV----------DPDGDILVVSTTAGRAKA-----RNLRRDPRVSLSVLDPDFPYRYVEVEGTAELVED 72 (117)
T ss_pred CCCEEEEEEEEEE----------cCCCCEEEEEecCCcHhh-----HhhhhCCeEEEEEECCCCCccEEEEEEEEEEecC
Confidence 4567777655430 113344889999999996 3699999999999999887 99999999999987
Q ss_pred HH
Q psy2497 277 KE 278 (331)
Q Consensus 277 ~e 278 (331)
++
T Consensus 73 ~~ 74 (117)
T TIGR03618 73 PD 74 (117)
T ss_pred Cc
Confidence 54
No 29
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=97.79 E-value=5.4e-05 Score=63.78 Aligned_cols=75 Identities=17% Similarity=0.095 Sum_probs=55.8
Q ss_pred cCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC-CceEEEEEEeeEc
Q psy2497 196 GQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-KRSVRIEGHVEKT 274 (331)
Q Consensus 196 ~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-~RQVri~G~v~~~ 274 (331)
...|.||.|-+... .+++...|+|...|+|. ++|..||+|+|+|+.+.- .++|+|+|+|+-+
T Consensus 23 ~~dG~P~~~P~~~~------------~~d~~l~~~t~~~s~K~-----~~l~~np~Vsl~~~~~~~~~~~v~v~G~a~i~ 85 (130)
T TIGR03667 23 RRSGQPQPVPVWFL------------WDGTEFLIYSRPQAAKL-----RNIRRNPRVSLHLNSDGRGGDVVVFTGTAEVV 85 (130)
T ss_pred CCCCceEEEEEEEE------------EECCEEEEEeCCcCHHH-----HHHhhCCcEEEEEEcCCCCceEEEEEEEEEEe
Confidence 34567888866554 24555778999999995 379999999999988554 4899999999988
Q ss_pred CHH----HHHHHHhcCC
Q psy2497 275 SDK----ESDDYFQSRP 287 (331)
Q Consensus 275 ~~~----es~~yf~~Rp 287 (331)
.+. +.++||...+
T Consensus 86 ~d~~~~~~~~~~~~~y~ 102 (130)
T TIGR03667 86 ADAPPAREIPAYLAKYR 102 (130)
T ss_pred CCchhHHHHHHHHHHhh
Confidence 755 4556666433
No 30
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=97.77 E-value=0.00021 Score=62.95 Aligned_cols=75 Identities=25% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCC----------C--CeEEEEEE
Q psy2497 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEP----------L--KRSVRIEG 118 (331)
Q Consensus 51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~----------~--~~qvri~G 118 (331)
...++.||+++ +|+|.+-|+.+. ++++.||||+...++|+.-|+.||.||+...... . -+-|.+.|
T Consensus 22 ~~~~~~La~~~-~~~PyivP~~y~-~~~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~~s~~y~SVvv~G 99 (166)
T COG3467 22 AGRVGRLAFAG-DGQPYVVPLNYG-YEGGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFNSSRNYRSVVVFG 99 (166)
T ss_pred hCCEEEEEEcC-CCCcEEEEeEeE-EeCCeEEEEeCCcchhhHHhhcCCcEEEEEEccccceecccccCCcceEEEEEEe
Confidence 55789999998 456999999985 5666799999999999999999999999998655 2 25688899
Q ss_pred EEEecCCcc
Q psy2497 119 HVEKTSDKE 127 (331)
Q Consensus 119 ~a~~~~~~~ 127 (331)
+++.+++.+
T Consensus 100 ~~~~l~~~~ 108 (166)
T COG3467 100 RAEELSDLE 108 (166)
T ss_pred EEEEcCChH
Confidence 999998743
No 31
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=97.69 E-value=0.00042 Score=61.21 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=68.5
Q ss_pred CceEEEEeecC----CCCeeEEEEEEEE---eeCCe-EEEEecCCCcchhhhhcCCcEEEEEEeCCCC------------
Q psy2497 52 ANAMFIATSTK----NGIPSGRMVLLKS---YGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLK------------ 111 (331)
Q Consensus 52 ~~~~~LATvd~----dG~P~~R~V~~r~---~~~~g-l~F~T~~~S~K~~eL~~np~val~f~~~~~~------------ 111 (331)
.+..+|+|++. +|.|-.-.|.+-. .+.+| .+|+-..-+...++|.+||+|+|++.++...
T Consensus 17 ~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~~~~~~~~~~dp~~~ 96 (170)
T PF13883_consen 17 SRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQGGDCDNSGVDPEDP 96 (170)
T ss_dssp -SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGGSSHHHHHT--TTST
T ss_pred CCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCCCCcccccCCCCCCC
Confidence 45688999988 8999998887751 23344 8999999999999999999999999977543
Q ss_pred --eEEEEEEEEEecCCcchh----HHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2497 112 --RSVRIEGHVEKTSDKESD----DYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYV 185 (331)
Q Consensus 112 --~qvri~G~a~~~~~~~~~----~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~ 185 (331)
--|.|.|+++.++.++.+ .|+..-| ..+.|++.+ .+.+|..++
T Consensus 97 ~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP---------------------------~a~~w~~~~----~~hdf~~~r 145 (170)
T PF13883_consen 97 ACPRVTLTGRAEPVPPDEAAAARAAYLSRHP---------------------------DAKHWLPFN----SPHDFFFYR 145 (170)
T ss_dssp TS-EEEEEEEEEE--TTTHHHHHHHHHHH-G---------------------------GGGGS-GG-------G--EEEE
T ss_pred CCcEEEEEEEEEEcCchHHHHHHHHHHHHCc---------------------------Ccccccccc----ccCccEEEE
Confidence 368999999998755421 1222111 111122211 246799999
Q ss_pred EeceEEEeeecC
Q psy2497 186 VIPKVIEFWQGQ 197 (331)
Q Consensus 186 v~p~~iEfwq~~ 197 (331)
|.|++|-|..+-
T Consensus 146 l~i~~v~~vgGF 157 (170)
T PF13883_consen 146 LEIERVYLVGGF 157 (170)
T ss_dssp EEEEEEEEE-SS
T ss_pred EEEEEEEEECcc
Confidence 999999887553
No 32
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=97.66 E-value=7.7e-05 Score=60.39 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=49.6
Q ss_pred CCCccceEEEeccCCCCCCCCCCCcCC------CCceEeeecCCCccccccchhHh-hCCceEEEeecCCCCceEEEEEE
Q psy2497 198 SDRVHDRIVFKRPVPGEPLGPHSHEGE------DGWYYERLFPQPKQGIQYLHLKA-ENPQASLAFYWEPLKRSVRIEGH 270 (331)
Q Consensus 198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~------~gw~f~tl~pS~K~~~~~~~~l~-~np~aal~f~W~~l~RQVri~G~ 270 (331)
.+.|..|.+..+ +... +-..|+|..-|.|.. +|. .||.++++||-+...-|+||.|.
T Consensus 32 ~~~P~~RTvVlR-----------gf~~~~~~~~~~L~f~TD~RS~Kv~-----~l~~~~p~~e~~~~~~~~~~Q~Ri~G~ 95 (100)
T PF12766_consen 32 DGSPRVRTVVLR-----------GFDPDLKPESDLLTFHTDARSPKVA-----QLASANPRVELVFWFPETREQFRIRGR 95 (100)
T ss_dssp TTEEEEEEEEEE-----------EEETT----TTEEEEEEETTSHHHH-----HHH-H--EEEEEEEECCCTEEEEEEEE
T ss_pred CCCCceeEEEEc-----------CcccccccccCeEEEEecCCchhHH-----HHhccCCCEEEEEEeCCccEEEEEEEE
Confidence 455899999887 2333 348999999999973 799 99999999999999999999999
Q ss_pred eeEc
Q psy2497 271 VEKT 274 (331)
Q Consensus 271 v~~~ 274 (331)
|.-+
T Consensus 96 a~ii 99 (100)
T PF12766_consen 96 ASII 99 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9754
No 33
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=96.92 E-value=0.0095 Score=49.26 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=59.1
Q ss_pred ceEEEEeec-CCCCeeEEEEEEEEeeCCeEEEE-ecC----CCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497 53 NAMFIATST-KNGIPSGRMVLLKSYGKNGFVFF-TNY----NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126 (331)
Q Consensus 53 ~~~~LATvd-~dG~P~~R~V~~r~~~~~gl~F~-T~~----~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~ 126 (331)
..+.|.|++ .+|.|+.-+|.+-. ++++++++ ++. ++..+.||.+||.|.|.+- . -+..+++++++++
T Consensus 8 p~~lL~t~GRkSG~~r~tpl~~~~-~~~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~----g--~~~~~~ar~v~~~ 80 (113)
T TIGR00026 8 PVLLLTTTGRKSGKPRTTPVTYVR-HDPGVLIVASNGGAPRHPDWYKNLKANPRVRVRVG----G--KTFVATARLVSGD 80 (113)
T ss_pred CEEEEEECCCCCCcEEEEEEEEEE-ECCEEEEEEecCCCCCCCHHHHHhhhCCcEEEEEC----C--EEEEEEEEECCch
Confidence 378899995 58999999998754 44567665 665 4777999999999999872 1 2579999999999
Q ss_pred chhHHHhc
Q psy2497 127 ESDDYFQS 134 (331)
Q Consensus 127 ~~~~~~~~ 134 (331)
+.++.|..
T Consensus 81 e~~~~~~~ 88 (113)
T TIGR00026 81 ERDQLWAG 88 (113)
T ss_pred hHHHHHHH
Confidence 88888853
No 34
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=95.55 E-value=0.035 Score=47.64 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=56.2
Q ss_pred CCCCccceEEEeccCCCCCCCCCCCcCC-CCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497 197 QSDRVHDRIVFKRPVPGEPLGPHSHEGE-DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS 275 (331)
Q Consensus 197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~-~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~ 275 (331)
..+.+|.|--... +.+. ....|+|+..|+|. ++|..||+|+++|--..-.-=|-|+|.++-+.
T Consensus 27 ~~g~phsRpM~f~-----------hdg~~~tiwf~T~kds~~v-----~eik~n~~v~v~~~~~~~~~fv~v~Gtael~~ 90 (145)
T COG3871 27 ENGHPHSRPMTFN-----------HDGPKGTIWFFTNKDSRKV-----EEIKKNPKVCVLFGYDDHDAFVEVSGTAELVE 90 (145)
T ss_pred CCCCccccceecc-----------CCCCcccEEeeccCchHHH-----HHHhhCCcEEEEEecCCCcceEEEEEEEEeec
Confidence 3457999987755 1222 56899999999996 47999999999999998878899999999887
Q ss_pred HHHH-HHHHh
Q psy2497 276 DKES-DDYFQ 284 (331)
Q Consensus 276 ~~es-~~yf~ 284 (331)
+... +.+|.
T Consensus 91 dra~~d~~W~ 100 (145)
T COG3871 91 DRAKIDELWT 100 (145)
T ss_pred cHHHHHHhhh
Confidence 6543 44443
No 35
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=95.05 E-value=0.1 Score=44.17 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=48.7
Q ss_pred CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCC-ceEEEEEEeeEcC
Q psy2497 197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLK-RSVRIEGHVEKTS 275 (331)
Q Consensus 197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~-RQVri~G~v~~~~ 275 (331)
..+.+|.+-+..- .+++...|.+...|+|. +.|..||+||+++.=..-. +-|.|+|+|+.++
T Consensus 22 ~dG~P~~~Pv~~~------------~d~g~l~f~t~~~~~K~-----~nl~~np~Vsl~v~~~~~~~~~v~v~G~A~~v~ 84 (132)
T TIGR03666 22 KDGTPVPTPVWAA------------VDGDKLLVRTKEDSWKV-----KRIRNNPRVTLAPCDRRGRPTGPVVPGRARILD 84 (132)
T ss_pred CCCcEEEEEEEEE------------EECCEEEEEECCcCHHH-----HHHHhCCCEEEEEECCCCCEeEEEEEEEEEEEc
Confidence 3456777654443 24556888888889895 3799999999998421111 3499999999998
Q ss_pred HHHHHHH
Q psy2497 276 DKESDDY 282 (331)
Q Consensus 276 ~~es~~y 282 (331)
++|...-
T Consensus 85 ~~e~~~~ 91 (132)
T TIGR03666 85 GAETARA 91 (132)
T ss_pred chhHHHH
Confidence 7777644
No 36
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=93.93 E-value=0.12 Score=45.88 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=55.4
Q ss_pred CCceEEEEeecCCCCeeEEEEEEEE-eeCCeEEEEecC-CCcchhh-hhcCCcEEEEEEeCC-CCeEEEEEEEEEecC
Q psy2497 51 EANAMFIATSTKNGIPSGRMVLLKS-YGKNGFVFFTNY-NSRKGNE-LAENPQASLAFYWEP-LKRSVRIEGHVEKTS 124 (331)
Q Consensus 51 e~~~~~LATvd~dG~P~~R~V~~r~-~~~~gl~F~T~~-~S~K~~e-L~~np~val~f~~~~-~~~qvri~G~a~~~~ 124 (331)
-...++|||+|.||.|..-++.+.. .|.+++.+-+|. ...|... |..||++++.+.... ...-+.|.|++++..
T Consensus 40 ~~~~~~laT~d~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~~~~~f~v~gt~~I~~ 117 (173)
T COG3576 40 TSQLAALATVDKDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRNRRALLFLVKGTARIQG 117 (173)
T ss_pred cccEEEEEEeccCCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccCCccceEEecceEEEEe
Confidence 4567899999999999988887633 343666555554 4455444 899999999999873 556688999988754
No 37
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=93.91 E-value=0.2 Score=42.43 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=53.1
Q ss_pred ceEEEEeec-CCCCeeEEEEEEEEeeCCeEEEEec-----CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497 53 NAMFIATST-KNGIPSGRMVLLKSYGKNGFVFFTN-----YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126 (331)
Q Consensus 53 ~~~~LATvd-~dG~P~~R~V~~r~~~~~gl~F~T~-----~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~ 126 (331)
..+.|.|++ .+|.|+.-+|.+.. +++.+++... .++.=+.||.+||.|.|.+- .-+..++++.++++
T Consensus 26 ~~~lLtt~GRkSG~~r~tpl~~~~-~g~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~------g~~~~~~a~~~~~~ 98 (132)
T PF04075_consen 26 PVLLLTTTGRKSGRPRRTPLVYVR-DGGRLVVVASNGGAPRHPDWYRNLRANPEVTVEVG------GRRRRVRAREVTDD 98 (132)
T ss_dssp EEEEEEEE-TTT-SEEEEEEEEEE-ETTEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEET------TEEEEEEEEEE-HH
T ss_pred cEEEEEECCCCCCCeEEEEEEEEE-eCCEEEEEEccCCCCCCChhHHhhhhCCcEEEEEC------CEEEEEEEEEcCch
Confidence 368999997 48999999997653 4456666555 36778899999999999762 24678888999988
Q ss_pred chhHHHh
Q psy2497 127 ESDDYFQ 133 (331)
Q Consensus 127 ~~~~~~~ 133 (331)
+.+++|.
T Consensus 99 er~~~~~ 105 (132)
T PF04075_consen 99 ERARLWA 105 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888874
No 38
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=0.12 Score=46.50 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=57.6
Q ss_pred CCccceEEEeccCCCCCCCCC-CCcCCCCceEeeecCCCccccccchhHhhCC-----------ceEEEeecCCCCceEE
Q psy2497 199 DRVHDRIVFKRPVPGEPLGPH-SHEGEDGWYYERLFPQPKQGIQYLHLKAENP-----------QASLAFYWEPLKRSVR 266 (331)
Q Consensus 199 ~r~h~R~~f~k~~~~~~~~~~-~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np-----------~aal~f~W~~l~RQVr 266 (331)
+.+.-|.+..+ |-+ .+.-.+-.+|.|...|-|.. +|+..| .+.++||.|+.-.|+|
T Consensus 36 ~~PrnRTVvfR-------gFl~~D~~tn~L~F~TD~rS~Ki~-----ei~~qp~~~~~s~~~~~~fEaC~yfP~T~eQ~R 103 (245)
T COG5135 36 NKPRNRTVVFR-------GFLFHDKRTNVLTFNTDMRSSKIT-----EIFIQPNSNNSSDSKTPFFEACFYFPETWEQYR 103 (245)
T ss_pred CCCccceEEEe-------eeeecccccceEEEecchhhhhhh-----HHhhccccCCCCCCCccHHHHHhcccchhhheE
Confidence 55667777665 211 01113468899999999963 688888 8889999999999999
Q ss_pred EEEEeeEcCHHHHHHHHh
Q psy2497 267 IEGHVEKTSDKESDDYFQ 284 (331)
Q Consensus 267 i~G~v~~~~~~es~~yf~ 284 (331)
|.|.+-.++.+.++.-|.
T Consensus 104 isGQ~~l~s~~~~~~~~~ 121 (245)
T COG5135 104 ISGQCFLISKQFKYDIFS 121 (245)
T ss_pred eeeeEEEEchhhcCcccC
Confidence 999999999999977664
No 39
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=89.82 E-value=0.47 Score=40.62 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=26.4
Q ss_pred hhHhhCCceEEEee-----cCCCCceEEEEEEeeEcCHHH
Q psy2497 244 HLKAENPQASLAFY-----WEPLKRSVRIEGHVEKTSDKE 278 (331)
Q Consensus 244 ~~l~~np~aal~f~-----W~~l~RQVri~G~v~~~~~~e 278 (331)
+.|..||+||+++. |... +.|+|+|+|+.+.+.+
T Consensus 65 ~ni~~nPrVs~~v~~~~~~~~~~-~~v~v~G~a~~~~d~~ 103 (141)
T TIGR03668 65 RNIEENPRVSLLVDRYDDDWTRL-WWVRADGRAEILRPGE 103 (141)
T ss_pred HHHhhCCCEEEEEecCCCCccce-EEEEEEEEEEEecCCc
Confidence 47999999999762 2222 5699999999988876
No 40
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.29 E-value=2.2 Score=36.15 Aligned_cols=121 Identities=11% Similarity=0.170 Sum_probs=80.9
Q ss_pred CceEEEEeecCCCCeeEEEEEEEEeeCC--eEEEEecCCCcchhhhhcCCcEEEEEEeCCC----CeEEEEEEEEEecCC
Q psy2497 52 ANAMFIATSTKNGIPSGRMVLLKSYGKN--GFVFFTNYNSRKGNELAENPQASLAFYWEPL----KRSVRIEGHVEKTSD 125 (331)
Q Consensus 52 ~~~~~LATvd~dG~P~~R~V~~r~~~~~--gl~F~T~~~S~K~~eL~~np~val~f~~~~~----~~qvri~G~a~~~~~ 125 (331)
.+++++|-.+ +|.|.+-...+ -+|+. .|++.|+..+++.+=+..|+.|+.+..-+.. -+.|..+|+.+.++.
T Consensus 12 q~v~Tw~~~~-e~~~w~asafY-vFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQfkge~~~l~~ 89 (145)
T COG3787 12 QHVLTWCVQQ-EGELWCASAFY-VFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQFKGEISRLSG 89 (145)
T ss_pred hheeeeeeec-CCceeeeeeEE-EEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeeeeeeeehhhhc
Confidence 4567887766 56677776654 46655 5899999999999999999999999987663 367888888888876
Q ss_pred cchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceE
Q psy2497 126 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI 205 (331)
Q Consensus 126 ~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~ 205 (331)
+++++. .+.+...||-.. + ..-.+|.|.+..|-|=+..-| +..-+
T Consensus 90 ~q~~~A------------------------------rk~Y~~rfp~ak-v---d~a~vwqleL~~ikftdNaLG-~~kkl 134 (145)
T COG3787 90 EQSDAA------------------------------RKAYNRRFPVAK-V---DSAPVWQLELDEIKFTDNALG-FGKKL 134 (145)
T ss_pred chHHHH------------------------------HHHHhccCchhh-c---ccCceEEeeeeeEEeeccccc-ccceE
Confidence 654321 112222333221 1 114578888888888766544 33445
Q ss_pred EEec
Q psy2497 206 VFKR 209 (331)
Q Consensus 206 ~f~k 209 (331)
.|.|
T Consensus 135 ew~r 138 (145)
T COG3787 135 EWLR 138 (145)
T ss_pred EEec
Confidence 5554
No 41
>PRK03467 hypothetical protein; Provisional
Probab=87.92 E-value=1.2 Score=38.37 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=45.9
Q ss_pred CceEeeecCCCccccccchhHhhCCceEEEeecCCC-CceEE---EEEEeeEcCHHH----HHHHHhcCCCC
Q psy2497 226 GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-KRSVR---IEGHVEKTSDKE----SDDYFQSRPYA 289 (331)
Q Consensus 226 gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-~RQVr---i~G~v~~~~~~e----s~~yf~~Rp~~ 289 (331)
.++|.|...|+.+ +.+.+||+||.+..=.+- -..|+ ++|.+..|+.+| -..|+..-|..
T Consensus 45 ~l~~~S~~~TrH~-----~~~~~np~VAgTI~~~~~~v~~I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A 111 (144)
T PRK03467 45 AFYLLTEEKTRHG-----QMMGPNAQVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDAARKRYNRRFPVA 111 (144)
T ss_pred EEEEEcCCCCHHH-----HHHhhCCCEEEEEcCCCcchhhceEEEEEEEEEecChhHHHHHHHHHHHhCcch
Confidence 3567777788885 369999999999985432 33444 999999999999 78899888865
No 42
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=85.20 E-value=0.78 Score=40.44 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=31.4
Q ss_pred hhHhhCCceEEEeecCCCC--------------ceEEEEEEeeEcCHHH----HHHHHhcCCCC
Q psy2497 244 HLKAENPQASLAFYWEPLK--------------RSVRIEGHVEKTSDKE----SDDYFQSRPYA 289 (331)
Q Consensus 244 ~~l~~np~aal~f~W~~l~--------------RQVri~G~v~~~~~~e----s~~yf~~Rp~~ 289 (331)
+.|.+||++||++.|+... --|.+.|.+++++.+| ...||..-|..
T Consensus 66 ~nl~~~~r~SL~i~~~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a 129 (170)
T PF13883_consen 66 RNLKADPRVSLTISEPQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDA 129 (170)
T ss_dssp HHHHH--EEEEEEEGGGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGG
T ss_pred HHHhhCCCEEEEEecCCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCc
Confidence 3699999999999998665 4589999999998764 55666655543
No 43
>PRK06733 hypothetical protein; Provisional
Probab=84.38 E-value=2.4 Score=36.92 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=34.2
Q ss_pred CCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497 223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD 276 (331)
Q Consensus 223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~ 276 (331)
+++...|.-+.-|+=. +-|.+||+|+|+|+++... ..|.|.++-+.+
T Consensus 47 d~~tIr~A~~~~skT~-----~NLk~Np~v~I~~~~~~~~--yqIkG~a~i~~e 93 (151)
T PRK06733 47 SKTSIRFAVDQRSRIV-----ENIRHNPGVVLTIIANESV--YSISGAAEILTD 93 (151)
T ss_pred CCCEEEEEEccCcHhH-----HHHhhCCcEEEEEEeCCcE--EEEEEEEEEEee
Confidence 4566666666655442 4799999999999999888 666777766553
No 44
>KOG3374|consensus
Probab=83.52 E-value=15 Score=32.75 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=50.1
Q ss_pred EEEeec-CCCCeeEEEEEEEEeeCC---e-EEEEecCCCcchhhhhcCCcEEEEEEeCCCC--------------eEEEE
Q psy2497 56 FIATST-KNGIPSGRMVLLKSYGKN---G-FVFFTNYNSRKGNELAENPQASLAFYWEPLK--------------RSVRI 116 (331)
Q Consensus 56 ~LATvd-~dG~P~~R~V~~r~~~~~---g-l~F~T~~~S~K~~eL~~np~val~f~~~~~~--------------~qvri 116 (331)
+|+|-. -.|.|-+-.|.+-+=+.+ | .|||-..--.-+.++++||+|+|+|....+. --+.|
T Consensus 62 TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~~qt~~Ck~~g~DPm~PtC~~~ml 141 (210)
T KOG3374|consen 62 TLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSDEQTLRCKEGGKDPMEPTCARSML 141 (210)
T ss_pred eeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEeeccccchhhcCCCCCCCchhhhhee
Confidence 454432 157777777766433322 4 7999888888899999999999999876532 35778
Q ss_pred EEEEEecCC
Q psy2497 117 EGHVEKTSD 125 (331)
Q Consensus 117 ~G~a~~~~~ 125 (331)
+|++.++..
T Consensus 142 sG~v~k~~~ 150 (210)
T KOG3374|consen 142 SGQVKKMDP 150 (210)
T ss_pred cceEEEeCC
Confidence 999988764
No 45
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=82.50 E-value=34 Score=30.17 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=47.3
Q ss_pred CceEEEEeecCCCCeeEEEEEEEEee---CC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCC-----------------
Q psy2497 52 ANAMFIATSTKNGIPSGRMVLLKSYG---KN-GFVFFTNYNSRKGNELAENPQASLAFYWEPL----------------- 110 (331)
Q Consensus 52 ~~~~~LATvd~dG~P~~R~V~~r~~~---~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~----------------- 110 (331)
...++|.|.+.+| |.+-.+-+.-.. +. .|..+-....+-.+.|..+..|-+.|.-|..
T Consensus 22 ~pfa~Lvt~~~~~-~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISPsWYp~k~~~~~~V 100 (169)
T PF04299_consen 22 HPFATLVTNGDGG-PVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISPSWYPTKAEHGKVV 100 (169)
T ss_dssp S-EEEEEEEETTE-EEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-CCCS----STTS--
T ss_pred CCcEEEEEcCCCC-cceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECchhhcccCcCCCCC
Confidence 3457888877554 888877664322 22 3899999999999999989899888874321
Q ss_pred ----CeEEEEEEEEEecC
Q psy2497 111 ----KRSVRIEGHVEKTS 124 (331)
Q Consensus 111 ----~~qvri~G~a~~~~ 124 (331)
-.-|-+.|+++++.
T Consensus 101 PTWNY~aVh~~G~~~~~~ 118 (169)
T PF04299_consen 101 PTWNYAAVHAYGTVRIID 118 (169)
T ss_dssp -EEEEEEEEEEEEEEE--
T ss_pred CCcCEEEEEEEEEEEEEe
Confidence 14477888888764
No 46
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=79.71 E-value=0.29 Score=45.71 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=48.9
Q ss_pred CCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEe
Q psy2497 50 IEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW 107 (331)
Q Consensus 50 ~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~ 107 (331)
.+...++|||++.+|.|..-.--+. +++.++|+|...-.+...+|..||+|++.|.-
T Consensus 92 ~~~~sv~lat~~~~g~~~~syAp~~-~~~~d~~iyis~~arh~~N~~~~p~vs~m~ie 148 (245)
T COG0748 92 LEFDSVALATLRERGLPRASYAPLY-VDDGDYYIYISEIARHARNLGFNPKVSVMFIE 148 (245)
T ss_pred hccchHHHhhhhhcCCcCCCcCceE-ecCCceEEEEehHHHHhhccCcCCchhhheec
Confidence 3678899999999999988877765 45556999999999999999999999998863
No 47
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=74.97 E-value=8.5 Score=34.10 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=42.6
Q ss_pred EEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEe
Q psy2497 55 MFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW 107 (331)
Q Consensus 55 ~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~ 107 (331)
..++|.+.+ .|++.||.+.. +++.+.+.-=.+|.=+.+|.++|.+.+.+-+
T Consensus 3 ~IvtT~~~~-~~N~APiGi~~-~~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~ 53 (177)
T PF04289_consen 3 VIVTTKNED-EPNAAPIGIIR-DGDELIIRLFKGSHTYENLKETGYFVVNITD 53 (177)
T ss_dssp EEEEEESTT--EEEEEEEEEE-SSSEEEEEEETTSHHHHHHHHHSEEEEEE--
T ss_pred EEEEECCCC-CCcCCcEEEEE-ECCEEEEEEcCCCchHHHHhhCCEEEEEECC
Confidence 568899998 99999999985 6667888888899999999999999998864
No 48
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=65.73 E-value=14 Score=30.97 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=38.6
Q ss_pred CCCceEeeecCCCccccccchhHhhCCceEEEeecC------C-------CCceEEEEEEeeEc-CHHHHHHHH
Q psy2497 224 EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWE------P-------LKRSVRIEGHVEKT-SDKESDDYF 283 (331)
Q Consensus 224 ~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~------~-------l~RQVri~G~v~~~-~~~es~~yf 283 (331)
++...|.+...++|. +.|.+|| +|++++=. + .-|.|.+.|+++.+ +.+|-.+.+
T Consensus 36 ~~~ly~h~~~~g~k~-----~~l~~~p-v~~~~~~~~~~~~~~~~~~~~~~y~SVi~~G~~~~v~d~~ek~~al 103 (143)
T PF12900_consen 36 GGSLYFHGARGGKKI-----ELLRNNP-VCFTVDEVDELVPAESACSFSMNYRSVIVFGRAEEVEDEEEKAEAL 103 (143)
T ss_dssp TTEEEEEECSHSHHH-----HHHHHEE-EEEEEEEEEEEEETSCGGGEEEEEEEEEEEEEEEEEHSHHHHHHHH
T ss_pred CCEEEEEECCcchHH-----HHhccCC-eEEEEEecCcEeecccCCcCcceEEEEEEEEEEEEeCCHHHHHHHH
Confidence 445777777778884 3578899 99998851 1 15899999999999 555544443
No 49
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=59.94 E-value=24 Score=30.93 Aligned_cols=48 Identities=29% Similarity=0.216 Sum_probs=37.4
Q ss_pred CceEeeecCCCccccccchhHhhCCceEEEeecCC------------CCceEEEEEEeeEcCHHH
Q psy2497 226 GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP------------LKRSVRIEGHVEKTSDKE 278 (331)
Q Consensus 226 gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~------------l~RQVri~G~v~~~~~~e 278 (331)
.+.|+....++|. .-|..||.||+++.=.. =-|.|.|.|+++.|++.+
T Consensus 49 ~lY~h~~~~grk~-----~~l~~~p~V~~ev~~~~~~~~~~~~~~s~~y~SVvv~G~~~~l~~~~ 108 (166)
T COG3467 49 HLYFHGSPEGRKI-----ELLRKNPLVCLEVDEIHGLVLKSPFNSSRNYRSVVVFGRAEELSDLE 108 (166)
T ss_pred eEEEEeCCcchhh-----HHhhcCCcEEEEEEccccceecccccCCcceEEEEEEeEEEEcCChH
Confidence 3666666668995 36999999999987544 347899999999999844
No 50
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=49.74 E-value=14 Score=33.34 Aligned_cols=65 Identities=26% Similarity=0.229 Sum_probs=39.0
Q ss_pred EEEeecCCCCceEEEEEEeeE---cC-HHHHHHHHhcCCCCcccc---eecccCCCCCCCHHHHHHHHHHHH
Q psy2497 253 SLAFYWEPLKRSVRIEGHVEK---TS-DKESDDYFQSRPYASKIG---AIASDQSRPCESRDQMSKITEELR 317 (331)
Q Consensus 253 al~f~W~~l~RQVri~G~v~~---~~-~~es~~yf~~Rp~~sqi~---a~~s~QS~~i~~r~~l~~~~~~~~ 317 (331)
-+.|.|..=+-.|...|.|.= +. .=.++.||+.||-...=+ +-+|-=|--=++=.+|.+++++-.
T Consensus 31 q~~fp~qAnGSli~~~g~vvGS~LIgQ~ft~~~yF~~RPSA~~y~~y~~~~SggSNl~psn~~l~~~v~~~~ 102 (188)
T PF02669_consen 31 QLVFPDQANGSLIEDDGKVVGSALIGQPFTSPRYFHPRPSAVDYNTYNAAASGGSNLGPSNPELRERVEERI 102 (188)
T ss_pred hhcCCCCCCcCEEeECCEEEEEEEecccCCCCCeeeCCCCCcCCCCCCccccccccCCCCChHHHHHHHHHH
Confidence 356888888888888888742 22 224579999999766532 333333333334445666665533
No 51
>KOG4558|consensus
Probab=47.80 E-value=8.4 Score=35.10 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=27.5
Q ss_pred hCCc-eEEEeecCCCCceEEEEEEeeEcCHHHHH
Q psy2497 248 ENPQ-ASLAFYWEPLKRSVRIEGHVEKTSDKESD 280 (331)
Q Consensus 248 ~np~-aal~f~W~~l~RQVri~G~v~~~~~~es~ 280 (331)
..|- ..++||.|++-.|+||.|.+.-++.+.+|
T Consensus 90 ~~P~~femC~yfp~TweQ~RisGqi~~it~~~~d 123 (251)
T KOG4558|consen 90 SGPIPFEMCGYFPKTWEQIRISGQIWLITPELAD 123 (251)
T ss_pred CCCcccceeeeechhhhheEecceEEEEcccccc
Confidence 3455 78999999999999999999999765443
No 52
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=47.75 E-value=1e+02 Score=25.33 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=38.6
Q ss_pred CCCce-EeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHHHHHHHhcC
Q psy2497 224 EDGWY-YERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSR 286 (331)
Q Consensus 224 ~~gw~-f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~es~~yf~~R 286 (331)
++++. +.++...++. -+-.+.|.+||.+.+.+ .. -+..+.++.++++|.++.|...
T Consensus 33 ~~~~~vvas~~G~~~~-p~W~~Nl~A~p~v~v~~-----~g-~~~~~~ar~v~~~e~~~~~~~~ 89 (113)
T TIGR00026 33 DPGVLIVASNGGAPRH-PDWYKNLKANPRVRVRV-----GG-KTFVATARLVSGDERDQLWAGV 89 (113)
T ss_pred CCEEEEEEecCCCCCC-CHHHHHhhhCCcEEEEE-----CC-EEEEEEEEECCchhHHHHHHHH
Confidence 34444 4466654441 12225799999999986 22 3589999999999999998753
No 53
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=29.87 E-value=47 Score=29.91 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCcc---cceecccCCCCCCCHHHHHHHHHHHHhHhc
Q psy2497 279 SDDYFQSRPYASK---IGAIASDQSRPCESRDQMSKITEELRQKYK 321 (331)
Q Consensus 279 s~~yf~~Rp~~sq---i~a~~s~QS~~i~~r~~l~~~~~~~~~~~~ 321 (331)
+..||++||..+. -.+-+|--|--=++=.+|.+++++-.+.+.
T Consensus 63 ~~~yFhgRPsa~~~~~yn~~aSggSNl~psNp~L~~rv~~~~~~lr 108 (190)
T COG2156 63 SPGYFHGRPSATDGEPYNAVASGGSNLGPSNPELLERVKARVAALR 108 (190)
T ss_pred CCccccCCCcccCCCCCCccccCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 6789999994443 335666666666677788888877654443
No 54
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=29.71 E-value=1.4e+02 Score=25.26 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHHHHH-HHhcCC
Q psy2497 224 EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDD-YFQSRP 287 (331)
Q Consensus 224 ~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~es~~-yf~~Rp 287 (331)
++...|.|.. -|+ |-+||..||.++++=+=. =+.=|||+|+|+-+++-+-.. .|...|
T Consensus 36 g~KlYfcTan--tK~---~yKqik~np~vefcg~~k-dg~~vrlrg~a~f~~nielkk~ale~yP 94 (132)
T COG5015 36 GEKLYFCTAN--TKP---YYKQIKKNPEVEFCGMDK-DGVMVRLRGRAEFVENIELKKLALEIYP 94 (132)
T ss_pred CCEEEEEeCC--ChH---HHHHHhhCCCeEEEEecC-CceEEEEeeeEEeccchHHHHHHhhhch
Confidence 4556666654 342 236899999999985533 244589999999998877766 565555
No 55
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=28.62 E-value=1.8e+02 Score=22.87 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=25.9
Q ss_pred eeCC-eEEEEecCCCcchhh------hhcCCcEEEEEEeCCCCe-EEEEEEE
Q psy2497 76 YGKN-GFVFFTNYNSRKGNE------LAENPQASLAFYWEPLKR-SVRIEGH 119 (331)
Q Consensus 76 ~~~~-gl~F~T~~~S~K~~e------L~~np~val~f~~~~~~~-qvri~G~ 119 (331)
++.+ |.++||+..++...+ |..+|.-.|+-|+|.+++ .|-+.|-
T Consensus 5 v~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L 56 (89)
T PF03088_consen 5 VDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGL 56 (89)
T ss_dssp E-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEE
T ss_pred EecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCC
Confidence 4555 888888886654332 668999999999999875 3666663
No 56
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=25.73 E-value=68 Score=29.06 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=36.9
Q ss_pred EEeecCCCCceEEEEEEeeE---c-CHHHHHHHHhcCCCCcc---cceecccCCCCCCCHHHHHHHHHHHHhHh
Q psy2497 254 LAFYWEPLKRSVRIEGHVEK---T-SDKESDDYFQSRPYASK---IGAIASDQSRPCESRDQMSKITEELRQKY 320 (331)
Q Consensus 254 l~f~W~~l~RQVri~G~v~~---~-~~~es~~yf~~Rp~~sq---i~a~~s~QS~~i~~r~~l~~~~~~~~~~~ 320 (331)
+.|.+..=+-.|+..|.|.= + -.=.++.||+.||-..- --+.+|-=|.-=++=.+|.+++++-.++|
T Consensus 33 ~~fp~qAnGSli~~~G~vvGS~LIgQ~F~~~~yF~~RPSa~~~~~y~~~~SggSNl~psnp~l~~~v~~r~~~~ 106 (193)
T PRK00315 33 AAFPWQANGSLIRKDGKVVGSALIGQNFTGPGYFHGRPSATAPMPYNPQASGGSNLAPSNPALDDAIKARVAAL 106 (193)
T ss_pred hhCcCcCCcCeEeECCEEeeehhcCCCCCCCCCcCCCCCcCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHH
Confidence 45677777777766776431 0 01125799999997741 11223333333334456666666655554
No 57
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=22.37 E-value=2.6e+02 Score=21.15 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=35.9
Q ss_pred EEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCC
Q psy2497 74 KSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSD 125 (331)
Q Consensus 74 r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~ 125 (331)
..+...|+.|.|+. .+..+-.+.+.|..+.....+.+.|++..+.+
T Consensus 22 ~diS~gG~~~~~~~------~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~ 67 (96)
T TIGR02266 22 INLSKGGLFIRTRK------PLAVGTRVELKLTLPGGERPVELKGVVAWVRP 67 (96)
T ss_pred hhcCCceEEEecCC------CcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCC
Confidence 34666789988853 56778899999998887677999999987664
No 58
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=21.94 E-value=6.2e+02 Score=23.19 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=50.5
Q ss_pred CCceEEEEeecCCCCeeEE--EEEEEEeeCC-e-EEEEecCCCcchhhhhcCCcEEEEEEeCCC----------------
Q psy2497 51 EANAMFIATSTKNGIPSGR--MVLLKSYGKN-G-FVFFTNYNSRKGNELAENPQASLAFYWEPL---------------- 110 (331)
Q Consensus 51 e~~~~~LATvd~dG~P~~R--~V~~r~~~~~-g-l~F~T~~~S~K~~eL~~np~val~f~~~~~---------------- 110 (331)
+....+|.|.... .|-+. |+++.+.+.+ + |.++-....+....|.....|-++|.-|..
T Consensus 21 ~~pfgtlvt~~~~-~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYISP~WY~sK~e~~~~ 99 (209)
T COG2808 21 AHPFGTLVTSGGG-GPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYISPAWYPSKRETPKV 99 (209)
T ss_pred hCCceEEEeccCC-ccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCcccCcccccccccCCCc
Confidence 4445778887754 56666 5556665533 3 778888888888888877777777764431
Q ss_pred -----CeEEEEEEEEEecCCcc
Q psy2497 111 -----KRSVRIEGHVEKTSDKE 127 (331)
Q Consensus 111 -----~~qvri~G~a~~~~~~~ 127 (331)
-.-|-+.|+++++.|++
T Consensus 100 VPTWNY~aVHayG~~~~~~D~~ 121 (209)
T COG2808 100 VPTWNYVAVHAYGTVRIIEDDE 121 (209)
T ss_pred CCCcceEEEEEecceeeeccHH
Confidence 13456677777776654
No 59
>KOG0290|consensus
Probab=20.27 E-value=1.3e+02 Score=29.23 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=35.2
Q ss_pred eEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCC-CcchhhhhcC---CcEEEEEEeCC
Q psy2497 54 AMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYN-SRKGNELAEN---PQASLAFYWEP 109 (331)
Q Consensus 54 ~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~-S~K~~eL~~n---p~val~f~~~~ 109 (331)
.-++|+|++|| ++|+.-||..+... .+|-+.. |.+.--|..| |+.-.+|.-.+
T Consensus 209 ~~~FASvgaDG--SvRmFDLR~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 209 RDVFASVGADG--SVRMFDLRSLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred cceEEEecCCC--cEEEEEecccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 34789999999 59999998766544 4555555 7777777654 44444444333
No 60
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=20.25 E-value=2.1e+02 Score=23.81 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=41.3
Q ss_pred eEEEEeecCCCCeeEEEEEE-EEeeCC--eEEEEecCCCcchhhhhcCCcEEEEEEeC
Q psy2497 54 AMFIATSTKNGIPSGRMVLL-KSYGKN--GFVFFTNYNSRKGNELAENPQASLAFYWE 108 (331)
Q Consensus 54 ~~~LATvd~dG~P~~R~V~~-r~~~~~--gl~F~T~~~S~K~~eL~~np~val~f~~~ 108 (331)
+++++| +++|.++.-++.. -.+..+ -+.|.-+..+.-...|.+.+..+|.+...
T Consensus 8 v~vvtt-~~~g~~~~~~~s~~~~~s~~Pp~v~~~l~~~~~t~~~i~~~~~f~vn~l~~ 64 (154)
T PF01613_consen 8 VAVVTT-DEDGEPNGMTVSSVTSVSLDPPLVLVSLNKSSHTYDNIEESGEFTVNVLSE 64 (154)
T ss_dssp -EEEEE-EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBG
T ss_pred cEEEEE-CCCCeEEEEEeeeeEEEECCCCEEEEEECCCCchhHHHhhCCcEEEEeCHH
Confidence 456667 8899999877653 233444 58889999999999999999999998654
Done!