RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2497
(331 letters)
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN
PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*
Length = 261
Score = 332 bits (853), Expect = e-115
Identities = 122/236 (51%), Positives = 159/236 (67%), Gaps = 4/236 (1%)
Query: 2 AAESTTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATS 60
+ DL R Y+ E E + +P K F +WF EA P I EANAM +AT
Sbjct: 27 GRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATC 86
Query: 61 TKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHV 120
T++G PS RM+LLK +GK+GF FFTN+ SRKG EL NP ASL FYWEPL R VR+EG V
Sbjct: 87 TRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPV 146
Query: 121 EKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 180
+K ++E++ YF SRP +S+IGA+ S QS R+ + K EEL Q Y++ + VP+PK
Sbjct: 147 KKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKS 205
Query: 181 WGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
WGGYV+ P+V+EFWQGQ++R+HDRIVF+R +P PLGP +H GE+ W YERL P
Sbjct: 206 WGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261
Score = 131 bits (332), Expect = 9e-37
Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
NP ASL FYWEPL R VR+EG V+K ++E++ YF SRP +S+IGA+ S QS R
Sbjct: 122 DSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDR 181
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
+ + K EEL Q Y++ + VP+PK
Sbjct: 182 EYLRKKNEELEQLYQDQE-VPKPKS 205
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI,
protein structure initiative; HET: FMN; 2.70A
{Saccharomyces cerevisiae} SCOP: b.45.1.1
Length = 228
Score = 311 bits (799), Expect = e-107
Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 15/234 (6%)
Query: 3 AESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIAT-ST 61
+ + Y L EK + +P LF WF+EA P A+ ++
Sbjct: 8 TQKPIIFAPETYQY--DKFTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAEL 65
Query: 62 KNGIPSGRMVLLKSYGKNGFVFFTNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHV 120
+G S R++L K GF ++N+ SRK +++A NP A++ F+W+ L+R VR+EG
Sbjct: 66 PSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGIT 125
Query: 121 EKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 180
E + + S+ YF++RP SKIGA AS QS ++R+++ ++T++ +++K+ + +P P +
Sbjct: 126 EHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDY 185
Query: 181 WGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
WGG ++P IEFWQG+ R+HDR V++R D W RL P
Sbjct: 186 WGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTEN-----------DPWKVVRLAP 228
Score = 135 bits (343), Expect = 1e-38
Identities = 32/85 (37%), Positives = 59/85 (69%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
A NP A++ F+W+ L+R VR+EG E + + S+ YF++RP SKIGA AS QS ++R
Sbjct: 101 ATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNR 160
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
+++ ++T++ +++K+ + +P P +
Sbjct: 161 EELDELTQKNTERFKDAEDIPCPDY 185
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex,
oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli
K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A*
1jnw_A* 1wv4_A*
Length = 199
Score = 308 bits (791), Expect = e-106
Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 15/212 (7%)
Query: 23 LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
L +D+ +P LFE W +A + + AM +AT ++G P R+VLLK Y + G V
Sbjct: 3 LRRRDLPADPLTLFERWLSQACEA-KLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV 61
Query: 83 FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
F+TN SRK +++ NP+ SL F W L+R V + G E+ S E YF SRP S+IG
Sbjct: 62 FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIG 121
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
A S QS +R + EL+QK+++G+ VP P WGG+ V + IEFWQG R+H
Sbjct: 122 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 180
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
DR +++R D W +RL P
Sbjct: 181 DRFLYQR-------------ENDAWKIDRLAP 199
Score = 132 bits (335), Expect = 8e-38
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
NP+ SL F W L+R V + G E+ S E YF SRP S+IGA S QS +R
Sbjct: 75 ENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISAR 134
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
+ EL+QK+++G+ VP P
Sbjct: 135 GILESKFLELKQKFQQGE-VPLPSF 158
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase;
HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1
PDB: 1t9m_A*
Length = 222
Score = 302 bits (776), Expect = e-104
Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 20/236 (8%)
Query: 2 AAESTTDLKDKRVPYKS---RNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIA 58
+ + L + + + +P + +W A GI E A+ +A
Sbjct: 4 SIQGKPLLGKGMSESLTGTLDAPFPEYQTLPADPMSVLHNWLERARRV-GIREPRALALA 62
Query: 59 TSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEG 118
T+ G PS R+V++ G VF T+ S+KG EL NP AS YW + + + G
Sbjct: 63 TADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNG 122
Query: 119 HVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRP 178
+ + ++DD + RPYA+ + S QS + M +L + +PRP
Sbjct: 123 QAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGP---LPRP 179
Query: 179 KHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
+ + + + + +EFW +R+H+R+ + R + GW RL P
Sbjct: 180 EGYCVFELRLESLEFWGNGQERLHERLRYDR-------------SDTGWNVRRLQP 222
Score = 128 bits (323), Expect = 1e-35
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
NP AS YW + + + G + + ++DD + RPYA+ + S QS +
Sbjct: 100 LHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDV 159
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
M +L + +PRP+
Sbjct: 160 QAMRNAARQLAELQGP---LPRPEG 181
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural
genomics, mycobacterium tuberculosis structural
proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium
tuberculosis} SCOP: b.45.1.1
Length = 246
Score = 303 bits (777), Expect = e-103
Identities = 80/237 (33%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 1 MAAESTTDLKDKRVPYKSRNEV---LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFI 57
M A L R Y + L + L W ++A G+ E NAM +
Sbjct: 27 MVAIDKDQLARMRGEYGPEKDGCGDLDFDWLDDGWLTLLRRWLNDAQRA-GVSEPNAMVL 85
Query: 58 ATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIE 117
AT +G P R VL K ++G FFT+Y S KG +LA P AS F W L R ++
Sbjct: 86 ATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQ 144
Query: 118 GHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPR 177
G V K S +E Y+ RP +++GA AS QSRP SR Q+ E+ +++ + D +P
Sbjct: 145 GPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPV 204
Query: 178 PKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
P WGGY + P+++EFWQG+ +R+H+RI ERL P
Sbjct: 205 PPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN-----------------GRLERLQP 244
Score = 133 bits (337), Expect = 1e-37
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
A P AS F W L R ++G V K S +E Y+ RP +++GA AS QSRP SR
Sbjct: 123 AVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSR 182
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
Q+ E+ +++ + D +P P
Sbjct: 183 AQLDNQLAEVTRRFADQDQIPVPPG 207
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine
5'-phosphate oxidase-related protein, structura
genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}
Length = 195
Score = 170 bits (432), Expect = 2e-52
Identities = 33/209 (15%), Positives = 75/209 (35%), Gaps = 20/209 (9%)
Query: 31 EPFKLFESWFHEA-NNTPGIIEANAMFIATSTKNGIPSGRMVLLKSY--GKNGFVFFTNY 87
+ A + ++ A + +AT NG P+ R ++ + + N F T+
Sbjct: 2 MSLAPWRGAIAHALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDT 61
Query: 88 NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASD 147
S K +++ + P A + +Y+ + R+ G + S +S Q + SD
Sbjct: 62 RSAKADQIQQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPAR--IAMWQELSD 119
Query: 148 QSRPCESR--DQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI 205
+R +I E + D + ++ ++ P ++ + + + +R
Sbjct: 120 AARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEP-QNRW 178
Query: 206 VFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
++ R + W E + P
Sbjct: 179 LYHR------------NDQQEWSSEAINP 195
Score = 68.7 bits (168), Expect = 6e-14
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
+ P A + +Y+ + R+ G + S +S Q + SD +R
Sbjct: 70 QQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPAR--IAMWQELSDAARLQFGW 127
Query: 307 --DQMSKITEELRQKYKEGDYVPRPKH 331
+I E + D + +
Sbjct: 128 PYPGKPRIKESGAFEPSPPDPIEPVPN 154
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI-2; 2.00A {Streptococcus suis}
Length = 150
Score = 112 bits (281), Expect = 2e-30
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY--WE 108
+ AT + G P R + + + G F T+ + ++L + + ++
Sbjct: 13 DMKVGVFATLDEYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAISEEG 72
Query: 109 PLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQS 149
L + VR+EG + F PY I S +
Sbjct: 73 YLIQVVRVEGTARPVENDYLKTVFADNPYYQHIYKDESSDT 113
Score = 58.4 bits (141), Expect = 1e-10
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 221 HEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFY--WEPLKRSVRIEGHVEKTSDKE 278
E+G + F + Y L + + ++ L + VR+EG +
Sbjct: 37 AANEEGIF----FMTSPETHFYDQLMG-DQRVAMTAISEEGYLIQVVRVEGTARPVENDY 91
Query: 279 SDDYFQSRPYASKIGAIASDQS 300
F PY I S +
Sbjct: 92 LKTVFADNPYYQHIYKDESSDT 113
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis;
NP_350077.1, structural genomics, joint center for
structural genomics; 2.00A {Clostridium acetobutylicum}
SCOP: b.45.1.1
Length = 146
Score = 78.5 bits (193), Expect = 5e-18
Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 32/156 (20%)
Query: 49 IIEANAMFIATSTKNGIPSGR-MVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW 107
+ + + + T+ +NG P+ + M+ LK G F TN ++R L +N + L F
Sbjct: 15 VESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVD 74
Query: 108 EPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQ 167
+ + + G +E D+ S + T+
Sbjct: 75 DNKFAGLMLVGTIEILHDRASKEML----------------------------WTDGCEI 106
Query: 168 KYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHD 203
Y G P + + +++ +
Sbjct: 107 YYPLGIDDPD---YTALCFTAEWGNYYRHLKNITFK 139
Score = 38.0 bits (88), Expect = 9e-04
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 215 PLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT 274
+ H+G ++ LK +N + L F + + + G +E
Sbjct: 36 AMMRLKHDGLKKFW----LSTNTSTRMVERLK-KNNKICLYFVDDNKFAGLMLVGTIEIL 90
Query: 275 SDKESDDYF 283
D+ S +
Sbjct: 91 HDRASKEML 99
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like
family protein, structural genomics, joint center for
structural genomics; HET: MSE FMN P33; 1.80A {Nostoc
punctiforme} SCOP: b.45.1.1
Length = 148
Score = 69.6 bits (170), Expect = 1e-14
Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 33/159 (20%)
Query: 51 EANAMFIATSTKNGIPSGR-MVLLKSYGKNGFV-FFTNYNSRKGNELAENPQASLAFYWE 108
+ T +G M + FFT S K E+ + Q +++F
Sbjct: 21 NIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFSSP 80
Query: 109 PLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQK 168
+R V I G + D+ EL+
Sbjct: 81 EQQRYVSISGTSQLVKDRNKMREL----------------------------WKPELQTW 112
Query: 169 YKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVF 207
+ +G P V + +W S I F
Sbjct: 113 FPKGLDEP---DIALLKVNINQVNYWDSTSSFKPQTISF 148
Score = 36.5 bits (84), Expect = 0.004
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 215 PLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT 274
P+ + + F + ++ + Q +++F +R V I G +
Sbjct: 40 PMSKSGDINSEATLW---FFTYAGSHKVTEIEH-HEQVNVSFSSPEQQRYVSISGTSQLV 95
Query: 275 SDKESDDYF 283
D+
Sbjct: 96 KDRNKMREL 104
>2fhq_A Putative general stress protein; alpha-beta structure, structural
genomics, PSI, protein STRU initiative; HET: MSE; 1.87A
{Bacteroides thetaiotaomicron} SCOP: b.45.1.1
Length = 141
Score = 64.5 bits (157), Expect = 5e-13
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFV-FFTNYNSRKGNELAENPQASLAFYWEP 109
+ + +A+ K G P + + + T +S K + NP+A L F +
Sbjct: 19 KCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEK- 77
Query: 110 LKRSVRIEGHVEKTSDKESDDYF 132
SV + G VE +D++
Sbjct: 78 -GDSVALMGEVEVVTDEKLKQEL 99
Score = 29.9 bits (67), Expect = 0.56
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYF 283
NP+A L F + SV + G VE +D++
Sbjct: 65 LSNPKAGLCFQEK--GDSVALMGEVEVVTDEKLKQEL 99
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split
barrel-like fold, structural genomics, joint center FO
structural genomics, JCSG; HET: MSE FMN; 1.60A
{Jannaschia SP}
Length = 175
Score = 57.2 bits (137), Expect = 3e-10
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 25/161 (15%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSY--GKNGFVFFTNYNSRKGNELAENPQASLAFYWE 108
A +AT +G P R ++L++ + F T+ S K + + + ++ +
Sbjct: 28 PARHPTLATIGTDG-PDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAIHIWIP 86
Query: 109 PLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQK 168
VR + + + F P A+++ P +
Sbjct: 87 KASLQVRAKAIAKILPG--DPNLFAQLPEAARMNYQGPVPGTPLPAEPD----------- 133
Query: 169 YKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKR 209
P + + I+ H R V+
Sbjct: 134 -------ATPNRFTRLICHLSEIDVLHL--TTPHQRAVYTA 165
>2re7_A Uncharacterized protein; general stress protein COG3871, structural
genomics, joint C structural genomics, JCSG; 2.50A
{Psychrobacter arcticus}
Length = 134
Score = 53.0 bits (127), Expect = 5e-09
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 56 FIATSTKNGIPSGR-MVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLKRS 113
I+TS K G M + N F + S ++ ++ + L + + K
Sbjct: 22 MISTSNKKGDIHAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEKNY 81
Query: 114 VRIEGHVEKTSDKE 127
V I G E +DK
Sbjct: 82 VSISGDAELPTDKA 95
Score = 31.8 bits (72), Expect = 0.12
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 215 PLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT 274
P+ ++ + F K ++ + + L + + K V I G E
Sbjct: 36 PMTTSEVNLDNKEIW---FIGDKTSDVVKDIQD-DARIGLTYATQDEKNYVSISGDAELP 91
Query: 275 SDKE 278
+DK
Sbjct: 92 TDKA 95
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}
Length = 150
Score = 53.4 bits (128), Expect = 5e-09
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWE 108
++ +F + + P R + +N + ++ +NP+ ++
Sbjct: 26 FLKECGVFYLATNEGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMN- 84
Query: 109 PLKRSVRIEGHVEKTSDKES-DDYFQSRPYASKI 141
+ +R+ G V +E + ++ P +
Sbjct: 85 KKGQWIRLTGEVANDDRREVKELALEAVPSLKNM 118
Score = 28.7 bits (64), Expect = 1.5
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 242 YLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKES-DDYFQSRPYASKI 292
+ + NP+ ++ + +R+ G V +E + ++ P +
Sbjct: 69 FKQMIQ-NPKVEISGMN-KKGQWIRLTGEVANDDRREVKELALEAVPSLKNM 118
>3ec6_A General stress protein 26; alpha-beta structure, structural
genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis}
Length = 139
Score = 50.7 bits (121), Expect = 4e-08
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL 110
++T + S M+ T+ S+K ++ NP + E
Sbjct: 14 GQRTGVLSTVRNDKPHSAFMMFFHEDFV--LYVATDRQSKKITDIENNPNVHVLLGREGK 71
Query: 111 K---RSVRIEGHVEKTSDKESDDYF 132
K + +EG D + F
Sbjct: 72 KLDEDYIEVEGLASIEEDSTLKNKF 96
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR
genomics, PSI, protein structure initiative, TB
structural consortium; HET: PLP; 1.70A {Mycobacterium
tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A*
Length = 147
Score = 48.4 bits (115), Expect = 2e-07
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 1/109 (0%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF-TNYNSRKGNELAENPQASLAFYWEP 109
+ +AT +G P V + + K L +P+AS+ +
Sbjct: 16 GNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADD 75
Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQM 158
EG + T + D + IA + S + R M
Sbjct: 76 GWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAM 124
Score = 33.0 bits (75), Expect = 0.059
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
+P+AS+ + EG + T + D + IA + S + R
Sbjct: 62 RRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYR 121
Query: 307 DQM 309
M
Sbjct: 122 QAM 124
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase
like fold, structural genomics; HET: MSE; 2.30A
{Xanthomonas campestris PV}
Length = 147
Score = 48.4 bits (115), Expect = 3e-07
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV-FFTNYNSRKGNELAENPQASLAFYW 107
+ + + + M G + FFT+ ++ L + + AF
Sbjct: 16 LKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSS 75
Query: 108 EPLKRSVRIEGHVEKTSDKE 127
+ I G + + +D
Sbjct: 76 KGHDLFASISGSLREDTDPA 95
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 4/64 (6%)
Query: 215 PLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT 274
P+ G + F K L + AF + I G + +
Sbjct: 36 PMTAQIEGDSGGPIW---FFTSKDNALIAMLGQ-GRRVIGAFSSKGHDLFASISGSLRED 91
Query: 275 SDKE 278
+D
Sbjct: 92 TDPA 95
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420
dependent reductase, unknown function; HET: MSE; 1.23A
{Mycobacterium smegmatis}
Length = 131
Score = 46.7 bits (111), Expect = 6e-07
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY-WEP 109
+AT +G P + ++ F +K + NP +++ +
Sbjct: 14 RPLYGHLATVRPDGTPQVNAMW-FAWDGEVLRFTHTTKRQKYRNIKANPAVAMSVIDPDN 72
Query: 110 LKRSVRIEGHVEKTSDKESDDYFQ--SRPYASKIGAIASDQSR 150
R + + G VE + ++ + Y + +D++
Sbjct: 73 PYRYLEVRGLVEDIVPDPTGAFYLKLNDRYDGPLTEPPADKAD 115
Score = 27.9 bits (62), Expect = 2.6
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 247 AENPQASLAFY-WEPLKRSVRIEGHVEKTSDKESDDYFQ--SRPYASKIGAIASDQSR 301
NP +++ + R + + G VE + ++ + Y + +D++
Sbjct: 58 KANPAVAMSVIDPDNPYRYLEVRGLVEDIVPDPTGAFYLKLNDRYDGPLTEPPADKAD 115
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI;
HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A*
Length = 182
Score = 45.8 bits (108), Expect = 4e-06
Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 4 ESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
+++ L R S E+ K++ ++ +K + + +
Sbjct: 3 RASSRLAHPRTTRMSGIEMADTKELQEKFWKALK-------------SDRTVMLGLDGVE 49
Query: 64 GIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEK 122
+ M G FFT+ ++ L + + AF + I G + +
Sbjct: 50 DGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLRE 109
Query: 123 TSDKE 127
+D
Sbjct: 110 DTDPA 114
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR
genomics, joint center for structural genomics, JCSG;
2.00A {Listeria innocua}
Length = 128
Score = 43.3 bits (102), Expect = 1e-05
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL 110
+ + + + P R + G + K E+ NP + ++
Sbjct: 16 QHQVGVLTSVQGDF-PHARYMTFLHDG-LTLYTPSGKELPKTEEVRRNPHVCVLIGYDSP 73
Query: 111 -KRSVRIEGHVEKTSDKESDD 130
+ I G D+ +
Sbjct: 74 GSAFLEINGLASLEEDESIKE 94
>2htd_A Predicted flavin-nucleotide-binding protein from family
structurally related to pyridoxine...; putative
pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A
{Lactobacillus delbrueckii subsp}
Length = 140
Score = 41.3 bits (97), Expect = 6e-05
Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
Query: 49 IIEANAMFIATSTKNGIP-SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW 107
+ + N +++AT +G P G + + + + + +L
Sbjct: 35 LFKNNLVYLATVDADGNPQVGPKGSMTVLDPSHLQYLEKTKGEAYENIKRGSKVALVAAD 94
Query: 108 EPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAI 144
P +VR+ E D + ++ +
Sbjct: 95 VPSHTAVRVLATAEVHEDDDYAKKVLAKTEFPNAFVV 131
Score = 28.6 bits (64), Expect = 1.5
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 241 QYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAI 295
Y ++K + +L P +VR+ E D + ++ +
Sbjct: 78 AYENIK-RGSKVALVAADVPSHTAVRVLATAEVHEDDDYAKKVLAKTEFPNAFVV 131
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI,
protein structure initiative, TB structural genomics
consortium; 2.00A {Mycobacterium tuberculosis} SCOP:
b.45.1.1
Length = 162
Score = 38.2 bits (89), Expect = 0.001
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNG--FVFFTNYNSRKGNELAENPQASLAF--- 105
+ +AT +G P + Y T S+K L +P+ S
Sbjct: 21 SSRTGTLATIGPDGQPHLTAM---WYAVIDGEIWLETKAKSQKAVNLRRDPRVSFLLEDG 77
Query: 106 -YWEPLKRSVRIEGHVEKTSDKE 127
++ L R V EG E + E
Sbjct: 78 DTYDTL-RGVSFEGVAEIVEEPE 99
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for
structural genomics, JCSG; 2.00A {Streptomyces
avermitilis}
Length = 155
Score = 34.9 bits (80), Expect = 0.013
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 81 FVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASK 140
F+ T S G L+E + L P + V +EG D +A K
Sbjct: 53 FLVATPAASPTGRNLSETGRVRLGI--GPTRDLVLVEGTALPLEPAGLPDGVGDT-FAEK 109
Query: 141 IG 142
G
Sbjct: 110 TG 111
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1
Length = 157
Score = 34.0 bits (77), Expect = 0.026
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY---- 106
E + I+T ++ GIP+G + + + + NP ++ F
Sbjct: 29 EFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEA 88
Query: 107 --WEPLKR-SVRIEGHVEKTSDKESDDYFQSRPYASKIGAI 144
+ R + + + + + G I
Sbjct: 89 KTNQIFARRRLSFDCTATLIERESQKWNQVVDQFQERFGQI 129
>2qea_A Putative general stress protein 26; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
oxidoreductase; 2.46A {Jannaschia SP}
Length = 160
Score = 33.0 bits (75), Expect = 0.064
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 54 AMFIATSTKNGIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLKR 112
M IP M G F T + +A PQ + + +
Sbjct: 19 GMLGIKGQGRLIP---MSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGEG 75
Query: 113 S-VRIEGHVEKTSDKE 127
++G +E+++D+E
Sbjct: 76 LYADLDGTLERSTDRE 91
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein;
NP_783940.1, structural genomics; HET: MSE; 1.55A
{Lactobacillus plantarum WCFS1}
Length = 145
Score = 31.8 bits (71), Expect = 0.16
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSY-GKNGFVFFTNY-NSRKGNELAENPQASL 103
N + ++T+ N ++V Y + ++F++ S +NP +
Sbjct: 13 STNKIALSTAV-NNEADVKIVNFVWYEAQPDTLYFSSVKTSPALKVYDQNPDIAF 66
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Length = 125
Score = 30.6 bits (69), Expect = 0.27
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 107 WEPLKRSVRIEGHVEKTS 124
+ RS+R+ G TS
Sbjct: 16 YSVQARSLRLHGVA--TS 31
Score = 30.6 bits (69), Expect = 0.27
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 258 WEPLKRSVRIEGHVEKTS 275
+ RS+R+ G TS
Sbjct: 16 YSVQARSLRLHGVA--TS 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.46
Identities = 52/307 (16%), Positives = 77/307 (25%), Gaps = 137/307 (44%)
Query: 27 DIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTN 86
++ FE+ + E N+ I A A + + L+K+Y
Sbjct: 82 QVLNLCLTEFENCYLEGND----IHALAAKLLQENDTTLVK-TKELIKNY---------- 126
Query: 87 YNSRK-GNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK---------ESDDYFQSRP 136
+R + S L R+V EG+ + +DDYF
Sbjct: 127 ITARIMAKRPFDKKSNS------ALFRAVG-EGNA-----QLVAIFGGQGNTDDYF---- 170
Query: 137 YASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQG 196
EELR Y+ Y
Sbjct: 171 --------------------------EELRDLYQ--TYHVL------------------- 183
Query: 197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAF 256
V D I F E L D E++F Q G+ L
Sbjct: 184 ----VGDLIKFS----AETLSELIRTTLDA---EKVFTQ---GLNILE------------ 217
Query: 257 YWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASK-IG-------AIASDQS--RPCESR 306
W +E S+ DY S P + IG + + P E R
Sbjct: 218 -W------------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 307 DQMSKIT 313
+ T
Sbjct: 265 SYLKGAT 271
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: FAD; 2.20A {Bacteroides
thetaiotaomicron} SCOP: b.45.1.1
Length = 178
Score = 30.5 bits (69), Expect = 0.52
Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 20/94 (21%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNG--FVFFTNYNSRKGNELAENPQASLAF--- 105
+A+A F+ + G P V+ ++G + K L N + F
Sbjct: 37 QADACFVGITDLEGNP---YVVPMNFGYENDTLYLHSGPEGGKIEMLQRNNNVCITFSLG 93
Query: 106 -------YWEPLK-----RSVRIEGHVEKTSDKE 127
S G VE D E
Sbjct: 94 HKLVYQHKQVACSYSMRSESAMCRGKVEFIEDME 127
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Length = 133
Score = 29.4 bits (66), Expect = 0.83
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 212 PGEPLGPHSHEGEDGWYY 229
PG +G H HEGE YY
Sbjct: 66 PGSSVGLHKHEGEFEIYY 83
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 29.0 bits (65), Expect = 0.83
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 212 PGEPLGPHSHEGEDGWYY 229
PG+ H HEG D YY
Sbjct: 37 PGQAQKVHVHEGSDKVYY 54
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens
STR. C58 structural genomics, PSI-2, protein structure
initiative; 1.94A {Agrobacterium tumefaciens}
Length = 258
Score = 29.5 bits (65), Expect = 1.3
Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 6/89 (6%)
Query: 51 EANAMFIAT-STKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAF---- 105
+ +AT +G P + FF + + + + S+
Sbjct: 38 TSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFG 97
Query: 106 YWEPLKRS-VRIEGHVEKTSDKESDDYFQ 133
+ L + + G ++ E
Sbjct: 98 KGDALTLPRLTLVGRADRIGPDEVPLAIA 126
>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate
superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A
3pkx_A* 3oul_A 3oum_A*
Length = 252
Score = 29.2 bits (65), Expect = 1.7
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 218 PHSHEGEDGWYYERLFPQ-PKQGIQYLHLKAENPQASLAFY 257
H E L+ Q I+ L L LAFY
Sbjct: 4 DKIHHHHHHSSGENLYFQGHMTSIKQLTLYTAELDRMLAFY 44
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix
domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella
pneumoniae subsp}
Length = 125
Score = 27.9 bits (62), Expect = 2.7
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 4/37 (10%)
Query: 193 FWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYY 229
+ V PG+ + H H +
Sbjct: 33 VLETNDSVV-VVWHAH---PGQEIASHVHPHGQDTWT 65
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET:
GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Length = 132
Score = 27.7 bits (61), Expect = 2.8
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 234 PQPKQGIQYLHLKAENPQASLAFY-----WEPLKRS 264
P + N + S FY EP+ +
Sbjct: 8 AGPTITPNLQLVYVSNVERSTDFYRFIFKKEPVFVT 43
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric
acid cycle structural genomics target, NYSGXRC, PSI;
2.70A {Escherichia coli} SCOP: e.44.1.1
Length = 483
Score = 28.5 bits (63), Expect = 3.6
Identities = 16/163 (9%), Positives = 39/163 (23%), Gaps = 22/163 (13%)
Query: 47 PGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGN----ELAENPQAS 102
P + A + G SY +F ++ + + E A
Sbjct: 247 PSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQ 306
Query: 103 LAFYWEPLKRSVRIEGHVEKTSDKESDDYF---------QSRPYASKI----GAIASDQS 149
+ + ++ + + D Y I G + +
Sbjct: 307 MQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADY 366
Query: 150 RPCESRDQ-----MSKITEELRQKYKEGDYVPRPKHWGGYVVI 187
++D+ KI + + P + + +
Sbjct: 367 EDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITL 409
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 3.9
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 14/50 (28%)
Query: 42 EANNTPGIIEANAMFIATSTKN-----GIPSGRMVLLKS--YGKN--GFV 82
+ G E M ATS G M S GF+
Sbjct: 1134 DDFQEEGSFEFGNM-KATSNTLEEFEHGRTPAEM----SRPATTTRNGFM 1178
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics,
PSI protein structure initiative; NMR {Agrobacterium
tumefaciens}
Length = 144
Score = 27.3 bits (60), Expect = 3.9
Identities = 11/51 (21%), Positives = 13/51 (25%)
Query: 219 HSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEG 269
H H F + L +NP AS FY L
Sbjct: 5 HHHHHHSSGRENLYFQGHMTHPDFTILYVDNPPASTQFYKALLGVDPVESS 55
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic
resistance, oxidoreductase; 1.2A {Deinococcus
radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A*
1w3o_A 2x1k_A 2x1j_A
Length = 216
Score = 27.7 bits (61), Expect = 4.1
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 25/131 (19%)
Query: 78 KNGFVFFTNYNSRKGNELAENPQASL-------------AFYWEPLKRSVRIEGHVEKTS 124
+ V+ TN R + A+L RSV + G +
Sbjct: 86 QGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLA 145
Query: 125 DKESDDYFQSRPYASKIGAIASDQSRPCESRD----QMSKIT-EELRQKYKEG------- 172
+++ + G + +RP D + ++ + K
Sbjct: 146 GEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEE 205
Query: 173 DYVPRPKHWGG 183
D+ W G
Sbjct: 206 DWPALGPEWLG 216
>2fur_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP:
b.45.1.1
Length = 209
Score = 27.2 bits (60), Expect = 7.4
Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 24/160 (15%)
Query: 49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASL----- 103
+++ N + GIP ++L + + SR L ++
Sbjct: 28 MLDRNFTCTVSFIDGGIPYAIPMML-ASEGKTIYLHGSMKSRIYGILKTGQLIAISLLEI 86
Query: 104 --------AFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 155
S I G + D E K+ D S
Sbjct: 87 NGIVLAKEIKNNSINYVSALIFGRPYEIDDTEKKIEVFRL-LTEKLVKGRWDNSIKPSYE 145
Query: 156 D----QMSKIT-EELRQKYKEGDYVPRPK--HWGGYVVIP 188
D + + E K + G W G V+P
Sbjct: 146 DLNGVFVFAVKPETFSMKARTGPPHDTSTDDIWSG--VLP 183
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 27.3 bits (60), Expect = 8.3
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 17/63 (26%)
Query: 173 DYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERL 232
D++ W V + V K + H + YY L
Sbjct: 82 DWLYSDNLWLAAV-----------------QQQVLKITGGSNSVVVLGHRKDASSYYLNL 124
Query: 233 FPQ 235
FPQ
Sbjct: 125 FPQ 127
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 26.5 bits (58), Expect = 9.5
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 212 PGEPLGPHSHEGEDGWY 228
P PH HE E Y
Sbjct: 48 PNGSTPPHFHEWEHEIY 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.399
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,050,155
Number of extensions: 294683
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 68
Length of query: 331
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 237
Effective length of database: 4,077,219
Effective search space: 966300903
Effective search space used: 966300903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.1 bits)