RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2497
(331 letters)
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 175 bits (444), Expect = 2e-54
Identities = 117/213 (54%), Positives = 151/213 (70%), Gaps = 4/213 (1%)
Query: 25 EKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVF 83
E + +P K F +WF EA P I EANAM +AT T++G PS RM+LLK +GK+GF F
Sbjct: 2 ETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRF 61
Query: 84 FTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGA 143
FTN+ SRKG EL NP ASL FYWEPL R VR+EG V+K ++E++ YF SRP +S+IGA
Sbjct: 62 FTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGA 121
Query: 144 IASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHD 203
+ S QS R+ + K EEL Q Y++ + VP+PK WGGYV+ P+V+EFWQGQ++R+HD
Sbjct: 122 VVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGGYVLYPQVMEFWQGQTNRLHD 180
Query: 204 RIVFKR--PVPGEPLGPHSHEGEDGWYYERLFP 234
RIVF+R P PLGP +H GE+ W YERL P
Sbjct: 181 RIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 213
Score = 46.8 bits (110), Expect = 9e-07
Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
NP ASL FYWEPL R VR+EG V+K ++E++ YF SRP +S+IGA+ S QS R
Sbjct: 74 DSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDR 133
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
+ + K EEL Q Y++ + VP+PK
Sbjct: 134 EYLRKKNEELEQLYQDQE-VPKPKS 157
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 172 bits (437), Expect = 2e-53
Identities = 76/214 (35%), Positives = 125/214 (58%), Gaps = 13/214 (6%)
Query: 23 LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKNGF 81
L EK + +P LF WF+EA P A+ +++ +G S R++L K GF
Sbjct: 3 LNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGF 62
Query: 82 VFFTNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASK 140
++N+ SRK +++A NP A++ F+W+ L+R VR+EG E + + S+ YF++RP SK
Sbjct: 63 TIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSK 122
Query: 141 IGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDR 200
IGA AS QS ++R+++ ++T++ +++K+ + +P P +WGG ++P IEFWQG+ R
Sbjct: 123 IGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSR 182
Query: 201 VHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
+HDR V++R D W RL P
Sbjct: 183 LHDRFVYRR-----------KTENDPWKVVRLAP 205
Score = 61.0 bits (147), Expect = 1e-11
Identities = 33/88 (37%), Positives = 60/88 (68%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
H A NP A++ F+W+ L+R VR+EG E + + S+ YF++RP SKIGA AS QS
Sbjct: 75 HDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVI 134
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRPKH 331
++R+++ ++T++ +++K+ + +P P +
Sbjct: 135 KNREELDELTQKNTERFKDAEDIPCPDY 162
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 163 bits (412), Expect = 6e-50
Identities = 81/212 (38%), Positives = 114/212 (53%), Gaps = 15/212 (7%)
Query: 23 LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
L +D+ +P LFE W +A + + AM +AT ++G P R+VLLK Y + G V
Sbjct: 3 LRRRDLPADPLTLFERWLSQACEA-KLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV 61
Query: 83 FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
F+TN SRK +++ NP+ SL F W L+R V + G E+ S E YF SRP S+IG
Sbjct: 62 FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIG 121
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
A S QS +R + EL+QK+++ VP P WGG+ V + IEFWQG R+H
Sbjct: 122 AWVSKQSSRISARGILESKFLELKQKFQQ-GEVPLPSFWGGFRVSLEQIEFWQGGEHRLH 180
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
DR +++R D W +RL P
Sbjct: 181 DRFLYQR-------------ENDAWKIDRLAP 199
Score = 46.0 bits (108), Expect = 1e-06
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
NP+ SL F W L+R V + G E+ S E YF SRP S+IGA S QS +R
Sbjct: 75 ENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISAR 134
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
+ EL+QK+++ VP P
Sbjct: 135 GILESKFLELKQKFQQ-GEVPLPSF 158
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP
oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 201
Score = 153 bits (388), Expect = 3e-46
Identities = 75/212 (35%), Positives = 107/212 (50%), Gaps = 19/212 (8%)
Query: 23 LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
L + L W ++A G+ E NAM +AT +G P R VL K ++G
Sbjct: 9 LDFDWLDDGWLTLLRRWLNDAQRA-GVSEPNAMVLATV-ADGKPVTRSVLCKILDESGVA 66
Query: 83 FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
FFT+Y S KG +LA P AS F W L R ++G V K S +E Y+ RP +++G
Sbjct: 67 FFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLG 126
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
A AS QSRP SR Q+ E+ +++ + D +P P WGGY + P+++EFWQG+ +R+H
Sbjct: 127 AWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMH 186
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
+RI ERL P
Sbjct: 187 NRIRVAN-----------------GRLERLQP 201
Score = 48.2 bits (114), Expect = 2e-07
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 248 ENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRD 307
P AS F W L R ++G V K S +E Y+ RP +++GA AS QSRP SR
Sbjct: 81 VTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRA 140
Query: 308 QMSKITEELRQKYKEGDYVPRPKH 331
Q+ E+ +++ + D +P P
Sbjct: 141 QLDNQLAEVTRRFADQDQIPVPPG 164
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 204
Score = 141 bits (356), Expect = 2e-41
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 31 EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSR 90
P ++ +W A G+ E A+ +AT G PS R+V++ G+ G VF T+ +S+
Sbjct: 18 NPMEVLRNWLERARRY-GVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQ 76
Query: 91 KGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSR 150
KG ELA+NP AS YW + + + G E+ D+ +D + SRPY + +I SR
Sbjct: 77 KGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSI---ASR 133
Query: 151 PCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRP 210
E+ + + E R+ + +PRP + + + + +EFW ++R+H+R+ + R
Sbjct: 134 QSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDR- 192
Query: 211 VPGEPLGPHSHEGEDGWYYERLFP 234
E GW + L P
Sbjct: 193 ------------DEGGWKHRYLQP 204
Score = 36.0 bits (82), Expect = 0.003
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
A+NP AS YW + + + G E+ D+ +D + SRPY + +I SR
Sbjct: 79 RELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSI---ASRQS 135
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRPKH 331
E+ + + E R+ + +PRP
Sbjct: 136 ETLADIHALRAEARRLAETDGPLPRPPG 163
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc
punctiforme pcc 73102 [TaxId: 63737]}
Length = 143
Score = 92.5 bits (229), Expect = 1e-23
Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 33/161 (20%)
Query: 49 IIEANAMFIATSTKNGIPSGRMVLLKSY--GKNGFVFFTNYNSRKGNELAENPQASLAFY 106
I + T +G + + FFT S K E+ + Q +++F
Sbjct: 14 IKNIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFS 73
Query: 107 WEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR 166
+R V I G + D+ EL+
Sbjct: 74 SPEQQRYVSISGTSQLVKDRNKMRELWK----------------------------PELQ 105
Query: 167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVF 207
+ +G V + +W S I F
Sbjct: 106 TWFPKG---LDEPDIALLKVNINQVNYWDSTSSFKPQTISF 143
Score = 36.6 bits (84), Expect = 0.001
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYA 289
+ Q +++F +R V I G + D+
Sbjct: 63 EHHEQVNVSFSSPEQQRYVSISGTSQLVKDRNKMRELWKPELQ 105
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 135
Score = 82.4 bits (203), Expect = 5e-20
Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 35/156 (22%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF-TNYNSRKGNELAENPQASLAFYWEP 109
+ + +A+ K G P + + ++ T +S K + NP+A L F +
Sbjct: 14 KCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEK- 72
Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKY 169
SV + G VE +D++ + + +
Sbjct: 73 -GDSVALMGEVEVVTDEKLKQELWQ----------------------------DWFIEHF 103
Query: 170 KEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI 205
G P + +W +H ++
Sbjct: 104 PGG---PTDPGYVLLKFTANHATYWIE-GTFIHKKL 135
Score = 32.3 bits (73), Expect = 0.032
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 233 FPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYA 289
++ + + NP+A L F + SV + G VE +D++ +
Sbjct: 47 MSTGADSLKTIDFLS-NPKAGLCFQEK--GDSVALMGEVEVVTDEKLKQELWQDWFI 100
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium
acetobutylicum [TaxId: 1488]}
Length = 141
Score = 79.4 bits (195), Expect = 8e-19
Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 34/168 (20%)
Query: 37 ESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNEL 95
E + E+N + + + + T+ +NG P+ + ++ + F TN ++R L
Sbjct: 3 EKFLIESNEL--VESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERL 60
Query: 96 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 155
+N + L F + + + G +E D+ S + +
Sbjct: 61 KKNNKICLYFVDDNKFAGLMLVGTIEILHDRASKEMLWT--------------------- 99
Query: 156 DQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHD 203
+ Y G + + +++ +
Sbjct: 100 -------DGCEIYYPLG---IDDPDYTALCFTAEWGNYYRHLKNITFK 137
Score = 29.0 bits (64), Expect = 0.43
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 213 GEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVE 272
G P + + LK N + L F + + + G +E
Sbjct: 28 GYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKK-NNKICLYFVDDNKFAGLMLVGTIE 86
Query: 273 KTSDKESDDYF 283
D+ S +
Sbjct: 87 ILHDRASKEML 97
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 142
Score = 67.2 bits (163), Expect = 2e-14
Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 9/135 (6%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVF-FTNYNSRKGNELAENPQASLAFYWEP 109
+ +AT +G P V + + K L +P+AS+ +
Sbjct: 11 GNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADD 70
Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKY 169
EG + T + D + IA + S + R M L
Sbjct: 71 GWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVL---- 126
Query: 170 KEGDYVPRPKHWGGY 184
H G
Sbjct: 127 ----LTLPISHVYGL 137
Score = 42.6 bits (99), Expect = 8e-06
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 249 NPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQ 308
+P+AS+ + EG + T + D + IA + S + R
Sbjct: 59 DPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQA 118
Query: 309 M 309
M
Sbjct: 119 M 119
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 160
Score = 66.0 bits (160), Expect = 8e-14
Identities = 22/170 (12%), Positives = 39/170 (22%), Gaps = 36/170 (21%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY---W 107
+ +AT +G P + T S+K L +P+ S
Sbjct: 20 SSRTGTLATIGPDGQPHLTAMWYAVID-GEIWLETKAKSQKAVNLRRDPRVSFLLEDGDT 78
Query: 108 EPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQ 167
R V EG E + E+ + G +
Sbjct: 79 YDTLRGVSFEGVAEIVEEPEALHRVGVSVWERYTGPYTDECKPM---------------- 122
Query: 168 KYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLG 217
G ++ + W + K +P +G
Sbjct: 123 ------VDQMMNKRVGVRIVARRTRSWDHR----------KLGLPHMSVG 156
Score = 32.5 bits (73), Expect = 0.034
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 7/93 (7%)
Query: 218 PHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFY---WEPLKRSVRIEGHVEKT 274
+ DG + + ++ + +P+ S R V EG E
Sbjct: 39 AMWYAVIDGEIWLETKAKSQKAVNLRR----DPRVSFLLEDGDTYDTLRGVSFEGVAEIV 94
Query: 275 SDKESDDYFQSRPYASKIGAIASDQSRPCESRD 307
+ E+ + G + +
Sbjct: 95 EEPEALHRVGVSVWERYTGPYTDECKPMVDQMM 127
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 125
Score = 41.2 bits (96), Expect = 2e-05
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEP 109
E + + T + P V K T S+K + A L+
Sbjct: 10 ERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQ--VD 67
Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRP 151
R + +EG SD ++ + R YA + + R
Sbjct: 68 GARWLSLEGRAAVNSDIDAVRDAELR-YAQRYRTPRPNPRRV 108
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium
(Nostoc sp. PCC 7120) [TaxId: 103690]}
Length = 135
Score = 36.7 bits (84), Expect = 8e-04
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAF----- 105
E + I+T ++ GIP+G + + + + NP ++ F
Sbjct: 7 EFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEA 66
Query: 106 -YWEPLKRSVRIEGHVEKTSDKESDDYFQSRPY 137
+ R ++ES + Q
Sbjct: 67 KTNQIFARRRLSFDCTATLIERESQKWNQVVDQ 99
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688
{Mesorhizobium loti [TaxId: 381]}
Length = 148
Score = 30.5 bits (68), Expect = 0.13
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASL---AFYW 107
+A K+G P + ++ + +K + NP+ S+
Sbjct: 17 ANRVGRLAC-AKDGQPYVVPLYYAYSD--AHLYAFSMPGKKIEWMRANPRVSVQVDEHGQ 73
Query: 108 EPLKRSVRIEGHVEKTSDKE 127
+SV ++G E+ D
Sbjct: 74 GRGWKSVVVDGRYEELPDLI 93
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 238
Score = 30.5 bits (68), Expect = 0.20
Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 57 IATSTKN--GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLK--- 111
++T +K G P G +V + + + ++ + L +P+ S+ +
Sbjct: 20 LSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQ 79
Query: 112 --RSVRIEGHVEKTSDKE 127
+ + + +++E
Sbjct: 80 AVGRLTLLAEARQLAEEE 97
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus
halodurans [TaxId: 86665]}
Length = 156
Score = 28.6 bits (63), Expect = 0.70
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 14/92 (15%)
Query: 49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASL----- 103
+ + N P + + + F RK + NP+
Sbjct: 11 FLNKARTGFLGLSTNDQPYVIPLNFV-WHNHAIYFHGASEGRKIKMIEANPEVCFTICED 69
Query: 104 --------AFYWEPLKRSVRIEGHVEKTSDKE 127
+ + SV I G +E S E
Sbjct: 70 LGTIVSPVPAHTDTAYMSVIIFGTIEPVSAIE 101
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga
maritima [TaxId: 2336]}
Length = 115
Score = 27.0 bits (59), Expect = 1.6
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 204 RIVFKRPVPGEPLGPHSHEGEDGWYY 229
R+ PG +G H HEGE YY
Sbjct: 43 RMKLP---PGSSVGLHKHEGEFEIYY 65
>d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2
{Yeast (Pichia pastoris) [TaxId: 4922]}
Length = 146
Score = 25.6 bits (56), Expect = 5.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 156 DQMSKITEELRQKYKEGDYVPRPKH 180
+++ EEL + ++ D+V PK
Sbjct: 103 NKVYTSAEELYEAMQKDDFVTLPKI 127
Score = 25.6 bits (56), Expect = 5.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
+++ EEL + ++ D+V PK
Sbjct: 103 NKVYTSAEELYEAMQKDDFVTLPKI 127
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus
thermophilus [TaxId: 274]}
Length = 105
Score = 25.1 bits (54), Expect = 6.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 212 PGEPLGPHSHEGEDGWYY 229
PG+ H HEG D YY
Sbjct: 37 PGQAQKVHVHEGSDKVYY 54
>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803
[TaxId: 1148]}
Length = 158
Score = 25.6 bits (55), Expect = 7.2
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 170 KEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEP 215
+++ P+ + QSD D IV E
Sbjct: 90 SLKEHIALPRKLESSSLQLSPEIEKLSQSDISWDSIVSITETGVEE 135
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 25.6 bits (55), Expect = 9.9
Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 5/124 (4%)
Query: 106 YWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEEL 165
+ + H S++ S++ F + I + + +++++ +
Sbjct: 122 LYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGA 181
Query: 166 RQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGED 225
E G + + V G+ + H HE
Sbjct: 182 VPYVLE-SGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEG----PKGDRIVDHYHEYHT 236
Query: 226 GWYY 229
+Y
Sbjct: 237 ETFY 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.399
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,256,985
Number of extensions: 59189
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 39
Length of query: 331
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,226,816
Effective search space: 300569920
Effective search space used: 300569920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)