Query psy2501
Match_columns 130
No_of_seqs 133 out of 1279
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 17:49:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cup_A Skeletal muscle LIM-pro 99.9 1.6E-21 5.4E-26 120.4 7.2 80 51-130 3-86 (101)
2 2xqn_T Testin, TESS; metal-bin 99.8 5.5E-21 1.9E-25 122.3 6.2 79 52-130 2-83 (126)
3 1m3v_A FLIN4, fusion of the LI 99.8 4.5E-21 1.5E-25 122.2 3.2 79 51-129 3-86 (122)
4 1iml_A CRIP, cysteine rich int 99.8 8.1E-20 2.8E-24 107.2 5.6 71 54-124 1-73 (76)
5 2xjy_A Rhombotin-2; oncoprotei 99.8 2.6E-19 9E-24 115.1 5.9 77 54-130 3-86 (131)
6 2d8z_A Four and A half LIM dom 99.8 5.7E-19 1.9E-23 102.0 6.2 67 51-117 3-69 (70)
7 2dar_A PDZ and LIM domain prot 99.8 6.5E-19 2.2E-23 106.5 6.6 67 51-117 23-89 (90)
8 1x68_A FHL5 protein; four-and- 99.8 3E-19 1E-23 104.8 4.6 69 51-119 3-75 (76)
9 2cur_A Skeletal muscle LIM-pro 99.8 5.9E-19 2E-23 101.7 5.5 67 51-117 3-69 (69)
10 1x3h_A Leupaxin; paxillin fami 99.8 1.1E-18 3.8E-23 103.2 6.0 73 45-117 7-79 (80)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.8 4.7E-19 1.6E-23 105.2 4.2 71 52-122 6-77 (81)
12 2jtn_A LIM domain-binding prot 99.8 1.9E-18 6.5E-23 116.9 7.4 78 51-129 58-138 (182)
13 2rgt_A Fusion of LIM/homeobox 99.8 1.3E-18 4.6E-23 116.4 6.3 77 52-129 5-84 (169)
14 2cuq_A Four and A half LIM dom 99.7 1.9E-18 6.3E-23 102.3 5.8 74 44-117 6-79 (80)
15 1wyh_A SLIM 2, skeletal muscle 99.7 1.8E-18 6.2E-23 100.3 5.7 67 51-117 3-71 (72)
16 2dj7_A Actin-binding LIM prote 99.7 2.7E-18 9.2E-23 101.7 5.6 66 51-117 13-79 (80)
17 1x4k_A Skeletal muscle LIM-pro 99.7 3.3E-18 1.1E-22 99.2 5.8 67 51-117 3-71 (72)
18 1j2o_A FLIN2, fusion of rhombo 99.7 3.1E-18 1.1E-22 107.8 6.1 73 53-128 3-78 (114)
19 1b8t_A Protein (CRP1); LIM dom 99.7 3E-20 1E-24 126.8 -3.8 69 54-122 116-185 (192)
20 2dlo_A Thyroid receptor-intera 99.7 4.6E-18 1.6E-22 100.8 6.0 72 45-117 8-80 (81)
21 1nyp_A Pinch protein; LIM doma 99.7 3.7E-18 1.3E-22 97.5 5.2 64 51-114 3-66 (66)
22 1x4l_A Skeletal muscle LIM-pro 99.7 5.7E-18 1.9E-22 98.3 6.0 66 51-116 3-72 (72)
23 2cu8_A Cysteine-rich protein 2 99.7 5.1E-18 1.7E-22 99.5 5.6 67 51-117 7-75 (76)
24 1rut_X Flinc4, fusion protein 99.7 1.7E-18 5.9E-23 117.7 3.8 79 52-130 4-89 (188)
25 1g47_A Pinch protein; LIM doma 99.7 6.7E-18 2.3E-22 99.1 5.5 67 50-116 8-76 (77)
26 2d8x_A Protein pinch; LIM doma 99.7 1E-17 3.4E-22 96.7 6.0 66 51-116 3-68 (70)
27 2ehe_A Four and A half LIM dom 99.7 3.4E-18 1.1E-22 101.6 4.0 74 44-117 6-81 (82)
28 1x63_A Skeletal muscle LIM-pro 99.7 1.2E-17 4.2E-22 99.2 6.1 74 44-117 6-81 (82)
29 1x64_A Alpha-actinin-2 associa 99.7 1.2E-17 4E-22 100.8 5.7 65 52-116 24-88 (89)
30 1b8t_A Protein (CRP1); LIM dom 99.7 1.2E-17 4E-22 113.9 6.1 63 52-114 6-69 (192)
31 2cor_A Pinch protein; LIM doma 99.7 2.2E-17 7.4E-22 97.6 5.9 66 50-116 12-77 (79)
32 2d8y_A Eplin protein; LIM doma 99.7 4.3E-17 1.5E-21 98.7 7.2 70 50-119 12-82 (91)
33 1x62_A C-terminal LIM domain p 99.7 8.6E-18 2.9E-22 99.2 3.6 66 51-116 13-78 (79)
34 1x61_A Thyroid receptor intera 99.7 6.5E-17 2.2E-21 93.7 4.9 67 51-118 3-71 (72)
35 1wig_A KIAA1808 protein; LIM d 99.7 1.2E-16 4.1E-21 93.0 5.2 64 51-114 3-67 (73)
36 1x6a_A LIMK-2, LIM domain kina 99.7 1.6E-16 5.3E-21 94.1 5.6 73 44-116 6-80 (81)
37 3f6q_B LIM and senescent cell 99.6 2.6E-16 8.7E-21 91.0 4.6 65 48-112 6-72 (72)
38 2egq_A FHL1 protein; LIM domai 99.6 5.3E-16 1.8E-20 91.0 5.5 66 44-109 6-76 (77)
39 2l3k_A Rhombotin-2, linker, LI 99.6 2E-16 6.7E-21 100.8 4.0 69 55-123 10-81 (123)
40 2l4z_A DNA endonuclease RBBP8, 99.6 6.1E-16 2.1E-20 98.5 5.2 62 51-112 59-123 (123)
41 2iyb_E Testin, TESS, TES; LIM 99.6 1E-15 3.5E-20 87.1 4.6 58 53-110 2-64 (65)
42 2co8_A NEDD9 interacting prote 99.6 1.4E-15 4.9E-20 90.3 4.8 64 52-115 14-80 (82)
43 1rut_X Flinc4, fusion protein 99.6 2.6E-17 8.8E-22 111.9 -3.8 107 14-120 20-139 (188)
44 2xjy_A Rhombotin-2; oncoprotei 99.6 1.1E-17 3.8E-22 107.5 -6.5 99 14-112 17-128 (131)
45 2xqn_T Testin, TESS; metal-bin 99.5 3.3E-17 1.1E-21 104.6 -5.3 99 13-111 17-125 (126)
46 1v6g_A Actin binding LIM prote 99.5 1.4E-14 4.7E-19 85.7 3.9 68 45-112 7-75 (81)
47 2jtn_A LIM domain-binding prot 99.4 2.4E-15 8.3E-20 101.6 -4.0 98 14-111 75-181 (182)
48 2rgt_A Fusion of LIM/homeobox 99.4 2.1E-15 7.1E-20 100.8 -4.4 102 14-115 21-131 (169)
49 2cup_A Skeletal muscle LIM-pro 99.0 6.1E-12 2.1E-16 77.0 -4.3 75 12-86 19-101 (101)
50 2cuq_A Four and A half LIM dom 98.4 9.3E-08 3.2E-12 55.7 1.3 33 98-130 1-33 (80)
51 2egq_A FHL1 protein; LIM domai 98.4 1.3E-07 4.3E-12 54.8 1.9 33 98-130 1-38 (77)
52 1x3h_A Leupaxin; paxillin fami 98.4 9.8E-08 3.3E-12 55.6 1.3 33 98-130 1-33 (80)
53 1x6a_A LIMK-2, LIM domain kina 98.3 1E-07 3.5E-12 55.7 0.9 33 98-130 1-33 (81)
54 1v6g_A Actin binding LIM prote 98.3 2.2E-07 7.5E-12 54.3 2.1 32 99-130 2-33 (81)
55 2ehe_A Four and A half LIM dom 98.3 1.1E-07 3.6E-12 55.8 0.7 33 98-130 1-35 (82)
56 2dlo_A Thyroid receptor-intera 98.2 4.8E-07 1.6E-11 52.8 1.5 32 98-130 2-33 (81)
57 1m3v_A FLIN4, fusion of the LI 98.1 2.3E-09 7.8E-14 67.8 -9.7 87 14-113 20-116 (122)
58 1x63_A Skeletal muscle LIM-pro 98.1 6.2E-07 2.1E-11 52.4 1.1 33 98-130 1-35 (82)
59 1zfo_A LAsp-1; LIM domain, zin 98.1 1.2E-06 4.2E-11 41.9 1.5 28 53-80 3-31 (31)
60 1j2o_A FLIN2, fusion of rhombo 97.3 7.8E-05 2.7E-09 46.1 1.3 93 9-113 12-108 (114)
61 2cur_A Skeletal muscle LIM-pro 94.9 0.015 5.3E-07 32.1 2.2 19 111-129 4-22 (69)
62 1nyp_A Pinch protein; LIM doma 94.8 0.0063 2.2E-07 33.4 0.5 19 111-129 4-22 (66)
63 2dar_A PDZ and LIM domain prot 94.5 0.013 4.4E-07 34.3 1.4 39 80-125 26-64 (90)
64 1wig_A KIAA1808 protein; LIM d 94.4 0.035 1.2E-06 31.1 3.0 20 9-28 14-33 (73)
65 2cor_A Pinch protein; LIM doma 93.2 0.033 1.1E-06 31.7 1.3 17 113-129 16-32 (79)
66 2dj7_A Actin-binding LIM prote 92.9 0.091 3.1E-06 30.0 2.9 41 80-126 16-56 (80)
67 1x62_A C-terminal LIM domain p 92.6 0.064 2.2E-06 30.4 2.0 19 112-130 15-33 (79)
68 2cu8_A Cysteine-rich protein 2 91.8 0.1 3.5E-06 29.2 2.2 40 80-125 10-49 (76)
69 2co8_A NEDD9 interacting prote 91.1 0.16 5.5E-06 29.0 2.6 40 80-125 16-55 (82)
70 1iml_A CRIP, cysteine rich int 90.3 0.13 4.6E-06 28.7 1.7 39 81-125 2-40 (76)
71 1x64_A Alpha-actinin-2 associa 90.2 0.14 4.7E-06 29.7 1.7 17 113-129 26-42 (89)
72 3f6q_B LIM and senescent cell 90.0 0.13 4.3E-06 28.2 1.5 10 81-90 13-22 (72)
73 2iyb_E Testin, TESS, TES; LIM 89.7 0.16 5.6E-06 27.5 1.8 39 81-125 4-45 (65)
74 1a7i_A QCRP2 (LIM1); LIM domai 89.5 0.13 4.6E-06 29.1 1.3 40 80-125 8-47 (81)
75 2d8x_A Protein pinch; LIM doma 89.5 0.25 8.5E-06 27.0 2.4 39 80-125 6-44 (70)
76 1x4l_A Skeletal muscle LIM-pro 89.4 0.25 8.4E-06 27.2 2.4 40 80-125 6-48 (72)
77 2d8y_A Eplin protein; LIM doma 89.3 0.22 7.6E-06 28.9 2.2 40 80-125 16-55 (91)
78 1wyh_A SLIM 2, skeletal muscle 89.2 0.26 8.8E-06 27.1 2.3 39 81-125 7-46 (72)
79 1x4k_A Skeletal muscle LIM-pro 89.1 0.31 1E-05 26.7 2.6 39 81-125 7-46 (72)
80 1x61_A Thyroid receptor intera 88.9 0.28 9.7E-06 26.9 2.4 40 80-125 6-46 (72)
81 1x68_A FHL5 protein; four-and- 88.9 0.31 1.1E-05 27.2 2.6 39 81-125 7-48 (76)
82 1g47_A Pinch protein; LIM doma 88.0 0.28 9.5E-06 27.3 2.0 9 81-89 13-21 (77)
83 2l4z_A DNA endonuclease RBBP8, 87.6 0.28 9.4E-06 30.4 1.9 19 111-129 60-79 (123)
84 2ysl_A Tripartite motif-contai 80.0 2.1 7.2E-05 23.2 3.3 46 80-126 21-71 (73)
85 1jm7_B BARD1, BRCA1-associated 78.7 2.3 7.7E-05 25.6 3.4 11 55-65 24-34 (117)
86 2l3k_A Rhombotin-2, linker, LI 78.5 1.3 4.3E-05 27.1 2.2 39 81-125 10-50 (123)
87 2ecy_A TNF receptor-associated 77.8 2.8 9.7E-05 22.2 3.3 45 80-125 16-63 (66)
88 2eqg_A Tumor necrosis factor, 75.3 1.3 4.3E-05 22.3 1.2 18 94-111 22-39 (49)
89 2djb_A Polycomb group ring fin 74.4 4.3 0.00015 21.9 3.6 45 80-124 16-62 (72)
90 2gvi_A Conserved hypothetical 72.8 1.3 4.5E-05 29.8 1.3 30 80-109 173-202 (204)
91 1t1h_A Gspef-atpub14, armadill 72.5 4.7 0.00016 22.1 3.5 47 78-125 7-56 (78)
92 1jjd_A Metallothionein, SMTA; 71.0 3.3 0.00011 21.9 2.3 29 81-109 9-38 (55)
93 1e4u_A Transcriptional repress 69.6 6 0.0002 22.1 3.4 47 80-126 12-64 (78)
94 2y43_A E3 ubiquitin-protein li 68.9 4.1 0.00014 23.5 2.8 45 80-124 23-69 (99)
95 2e5r_A Dystrobrevin alpha; ZZ 68.3 5.5 0.00019 21.5 3.0 37 72-110 6-45 (63)
96 1weo_A Cellulose synthase, cat 67.8 8.1 0.00028 22.5 3.7 22 100-121 43-67 (93)
97 3vk6_A E3 ubiquitin-protein li 64.3 5.1 0.00017 23.9 2.4 41 82-122 4-47 (101)
98 2ecv_A Tripartite motif-contai 64.3 7.8 0.00027 21.3 3.3 44 80-124 20-71 (85)
99 2ecg_A Baculoviral IAP repeat- 63.5 9.7 0.00033 20.8 3.5 24 102-127 48-71 (75)
100 2egp_A Tripartite motif-contai 62.1 8.1 0.00028 21.0 3.0 44 80-124 13-65 (79)
101 1wgm_A Ubiquitin conjugation f 62.0 10 0.00036 22.1 3.6 48 77-125 20-70 (98)
102 2ecw_A Tripartite motif-contai 61.7 12 0.00041 20.4 3.7 45 80-125 20-72 (85)
103 2kre_A Ubiquitin conjugation f 61.3 12 0.00039 22.0 3.7 49 76-125 26-76 (100)
104 3l11_A E3 ubiquitin-protein li 60.4 7.6 0.00026 23.0 2.9 43 80-123 16-61 (115)
105 1jm7_A BRCA1, breast cancer ty 60.1 7.3 0.00025 22.8 2.8 25 100-124 41-70 (112)
106 2csy_A Zinc finger protein 183 58.3 8.5 0.00029 21.2 2.7 44 80-124 16-61 (81)
107 4ic3_A E3 ubiquitin-protein li 57.9 10 0.00035 20.6 2.9 23 102-126 47-69 (74)
108 2ckl_A Polycomb group ring fin 57.9 13 0.00044 21.7 3.6 45 80-124 16-62 (108)
109 1ef4_A Subunit N, DNA-directed 57.0 4.1 0.00014 21.5 1.0 12 112-123 3-14 (55)
110 1g25_A CDK-activating kinase a 56.5 13 0.00046 19.3 3.2 48 80-127 4-58 (65)
111 2kr4_A Ubiquitin conjugation f 54.7 12 0.00042 21.0 3.0 47 77-124 12-60 (85)
112 2ecn_A Ring finger protein 141 54.0 10 0.00036 20.1 2.5 43 80-124 16-60 (70)
113 2ct2_A Tripartite motif protei 53.9 7.6 0.00026 21.6 2.0 45 80-124 16-68 (88)
114 2ckl_B Ubiquitin ligase protei 52.1 9.8 0.00033 24.2 2.5 44 80-123 55-101 (165)
115 2d8t_A Dactylidin, ring finger 51.5 6.6 0.00023 21.1 1.4 45 80-125 16-62 (71)
116 1chc_A Equine herpes virus-1 r 50.7 13 0.00043 19.5 2.5 25 99-123 25-51 (68)
117 2yur_A Retinoblastoma-binding 50.4 12 0.00041 20.2 2.4 42 80-122 16-62 (74)
118 2ecm_A Ring finger and CHY zin 50.3 10 0.00036 18.9 2.0 26 99-124 28-55 (55)
119 2xeu_A Ring finger protein 4; 49.6 9.7 0.00033 19.6 1.8 31 97-127 27-59 (64)
120 1rmd_A RAG1; V(D)J recombinati 47.8 13 0.00046 21.9 2.5 44 80-124 24-70 (116)
121 3ztg_A E3 ubiquitin-protein li 47.7 12 0.00042 21.0 2.2 43 79-122 13-60 (92)
122 3lrq_A E3 ubiquitin-protein li 47.4 11 0.00038 21.8 2.0 25 99-123 42-69 (100)
123 3nw0_A Non-structural maintena 46.8 6.7 0.00023 27.0 1.1 13 113-125 218-230 (238)
124 3hcs_A TNF receptor-associated 46.4 18 0.0006 23.0 3.0 44 80-124 19-65 (170)
125 3fl2_A E3 ubiquitin-protein li 45.3 12 0.00042 22.4 2.1 44 80-124 53-99 (124)
126 1bor_A Transcription factor PM 43.6 18 0.00062 18.4 2.3 23 100-123 26-48 (56)
127 2ect_A Ring finger protein 126 43.0 19 0.00065 19.4 2.5 13 113-125 53-65 (78)
128 4ayc_A E3 ubiquitin-protein li 42.1 26 0.00089 21.5 3.3 25 99-123 72-98 (138)
129 1z6u_A NP95-like ring finger p 42.0 15 0.0005 23.2 2.1 45 80-125 79-126 (150)
130 2yho_A E3 ubiquitin-protein li 40.8 23 0.00079 19.6 2.6 22 102-125 41-62 (79)
131 2ea6_A Ring finger protein 4; 40.1 9.6 0.00033 20.0 0.9 27 98-124 40-68 (69)
132 2cs3_A Protein C14ORF4, MY039 39.9 8.5 0.00029 22.0 0.6 32 53-84 15-47 (93)
133 1uw0_A DNA ligase III; DNA rep 39.8 6.6 0.00023 24.0 0.2 17 48-64 10-26 (117)
134 2c2l_A CHIP, carboxy terminus 39.2 20 0.00069 24.4 2.6 48 76-124 205-255 (281)
135 2lo3_A SAGA-associated factor 39.1 8.7 0.0003 19.0 0.5 11 114-124 19-29 (44)
136 3knv_A TNF receptor-associated 39.1 7.7 0.00026 24.3 0.4 42 80-122 32-76 (141)
137 4ayb_N DNA-directed RNA polyme 38.2 11 0.00039 20.6 0.9 13 112-124 4-16 (66)
138 3hct_A TNF receptor-associated 37.8 22 0.00074 21.1 2.3 43 80-123 19-64 (118)
139 3d00_A Tungsten formylmethanof 36.4 11 0.00038 25.0 0.9 27 79-111 163-189 (191)
140 2dip_A Zinc finger SWIM domain 35.0 29 0.001 20.4 2.5 36 74-110 27-65 (98)
141 2ds5_A CLPX, ATP-dependent CLP 33.6 30 0.001 17.8 2.1 27 81-107 13-40 (51)
142 1iym_A EL5; ring-H2 finger, ub 33.5 46 0.0016 16.3 3.0 24 99-122 28-53 (55)
143 4ap4_A E3 ubiquitin ligase RNF 32.9 28 0.00097 20.6 2.3 72 54-127 49-128 (133)
144 4hc9_A Trans-acting T-cell-spe 32.4 70 0.0024 19.3 4.0 12 113-124 60-71 (115)
145 2ysm_A Myeloid/lymphoid or mix 31.9 79 0.0027 18.5 4.4 28 54-81 8-38 (111)
146 1ovx_A ATP-dependent CLP prote 31.6 29 0.001 19.0 1.9 27 81-107 20-47 (67)
147 2l0b_A E3 ubiquitin-protein li 31.5 49 0.0017 18.5 3.1 27 99-125 62-90 (91)
148 3mhs_E SAGA-associated factor 31.0 9.5 0.00033 22.5 -0.1 10 114-123 77-86 (96)
149 3ng2_A RNF4, snurf, ring finge 30.7 14 0.00048 19.4 0.6 27 99-125 36-64 (71)
150 2kiz_A E3 ubiquitin-protein li 29.6 50 0.0017 17.1 2.7 27 99-125 36-64 (69)
151 2f42_A STIP1 homology and U-bo 29.4 39 0.0013 22.1 2.6 48 76-124 103-153 (179)
152 2hf1_A Tetraacyldisaccharide-1 28.7 19 0.00066 19.7 0.9 9 55-63 10-18 (68)
153 2jr6_A UPF0434 protein NMA0874 28.4 20 0.00069 19.6 0.9 9 55-63 10-18 (68)
154 2js4_A UPF0434 protein BB2007; 28.2 18 0.00062 19.9 0.7 10 54-63 9-18 (70)
155 2yu4_A E3 SUMO-protein ligase 27.6 35 0.0012 19.4 1.9 43 78-121 6-59 (94)
156 3c6w_A P28ING5, inhibitor of g 27.5 42 0.0015 17.5 2.1 43 54-108 10-57 (59)
157 1znf_A 31ST zinc finger from X 27.2 32 0.0011 13.3 1.3 11 80-90 2-12 (27)
158 2ep4_A Ring finger protein 24; 26.9 54 0.0019 17.2 2.6 25 99-123 37-63 (74)
159 3na7_A HP0958; flagellar bioge 26.5 19 0.00066 24.8 0.7 37 51-90 196-233 (256)
160 2d8v_A Zinc finger FYVE domain 26.0 22 0.00077 19.4 0.8 16 95-110 23-38 (67)
161 2jny_A Uncharacterized BCR; st 25.9 35 0.0012 18.6 1.6 9 55-63 12-20 (67)
162 1ard_A Yeast transcription fac 25.6 34 0.0012 13.4 1.3 11 80-90 3-13 (29)
163 2ysj_A Tripartite motif-contai 25.6 37 0.0013 17.3 1.7 31 80-111 21-51 (63)
164 3gj5_B Nuclear pore complex pr 25.5 16 0.00056 17.1 0.2 22 100-121 7-30 (34)
165 2ea5_A Cell growth regulator w 24.8 45 0.0016 17.7 2.0 25 99-125 34-59 (68)
166 1paa_A Yeast transcription fac 24.3 40 0.0014 13.3 1.4 12 80-91 3-14 (30)
167 2bay_A PRE-mRNA splicing facto 23.9 43 0.0015 17.5 1.7 43 80-123 4-49 (61)
168 2pv0_B DNA (cytosine-5)-methyl 23.9 73 0.0025 23.6 3.4 71 54-126 71-153 (386)
169 2lbz_A Thuricin17, thurincin H 23.0 27 0.00092 15.4 0.6 12 78-89 6-17 (31)
170 2vnf_A ING 4, P29ING4, inhibit 22.8 60 0.002 16.9 2.2 43 54-108 11-58 (60)
171 2m0e_A Zinc finger and BTB dom 22.6 46 0.0016 12.8 1.5 11 80-90 3-13 (29)
172 2pk7_A Uncharacterized protein 22.6 25 0.00084 19.3 0.5 9 55-63 10-18 (69)
173 2kvh_A Zinc finger and BTB dom 22.4 30 0.001 13.5 0.7 11 80-90 4-14 (27)
174 2ebr_A Nuclear pore complex pr 21.2 32 0.0011 17.4 0.8 29 96-124 7-37 (47)
175 1klr_A Zinc finger Y-chromosom 21.0 47 0.0016 12.9 1.3 11 80-90 3-13 (30)
176 3htk_C E3 SUMO-protein ligase 20.7 96 0.0033 21.7 3.4 46 79-124 181-232 (267)
177 1vq8_Z 50S ribosomal protein L 20.6 53 0.0018 18.6 1.7 34 54-95 28-61 (83)
178 2vpb_A Hpygo1, pygopus homolog 20.3 31 0.0011 18.5 0.7 26 54-79 9-39 (65)
179 3t6p_A Baculoviral IAP repeat- 20.3 51 0.0018 23.9 2.0 44 80-126 296-340 (345)
No 1
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.85 E-value=1.6e-21 Score=120.37 Aligned_cols=80 Identities=25% Similarity=0.571 Sum_probs=73.5
Q ss_pred CCCccccccccccc--cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccc--cCc
Q psy2501 51 TQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL--DVS 126 (130)
Q Consensus 51 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~--~~~ 126 (130)
.+.++|..|+++|. ++.+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..|+++|+ +.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~ 82 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQN 82 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCE
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeE
Confidence 45679999999996 67899999999999999999999998888999999999999999999999999999998 568
Q ss_pred eeeC
Q psy2501 127 IRNT 130 (130)
Q Consensus 127 ~~~~ 130 (130)
|+|+
T Consensus 83 ~~a~ 86 (101)
T 2cup_A 83 VEYK 86 (101)
T ss_dssp EESS
T ss_pred EEeC
Confidence 8874
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.83 E-value=5.5e-21 Score=122.32 Aligned_cols=79 Identities=25% Similarity=0.583 Sum_probs=72.6
Q ss_pred CCccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccc--cCcee
Q psy2501 52 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL--DVSIR 128 (130)
Q Consensus 52 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~--~~~~~ 128 (130)
..++|..|+++|. ++++.++++.||++||+|..|+.+|.+..|+..+|++||+.||.++|+++|.+|+++|. +.+|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 81 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVT 81 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEE
Confidence 3578999999997 67889999999999999999999999888999999999999999999999999999999 56787
Q ss_pred eC
Q psy2501 129 NT 130 (130)
Q Consensus 129 ~~ 130 (130)
|+
T Consensus 82 a~ 83 (126)
T 2xqn_T 82 YN 83 (126)
T ss_dssp ET
T ss_pred CC
Confidence 74
No 3
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=4.5e-21 Score=122.25 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=70.9
Q ss_pred CCCccccccccccccc-eeeecCcccccCCcccCCCCcccC--CCCeeccCCcccCHHhhhhhcCC--CCccCccccccC
Q psy2501 51 TQKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELG--TRNFFERDSRPYCEPDYHNLFSP--RCSYCNGPILDV 125 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~C~~~~~~~~~~--~C~~C~~~I~~~ 125 (130)
...++|..|+++|.+. ++.++++.||++||+|..|+.+|. +..|+.+++++||+.||.++|++ +|++|+++|++.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 3457899999999865 589999999999999999999997 35789999999999999999999 999999999987
Q ss_pred ceee
Q psy2501 126 SIRN 129 (130)
Q Consensus 126 ~~~~ 129 (130)
.|+|
T Consensus 83 ~~~~ 86 (122)
T 1m3v_A 83 DVMV 86 (122)
T ss_dssp ESSS
T ss_pred heEE
Confidence 6655
No 4
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=8.1e-20 Score=107.24 Aligned_cols=71 Identities=31% Similarity=0.729 Sum_probs=65.8
Q ss_pred ccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCH-HhhhhhcCCCCccCcccccc
Q psy2501 54 GCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCE-PDYHNLFSPRCSYCNGPILD 124 (130)
Q Consensus 54 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~~~~~~~~~~C~~C~~~I~~ 124 (130)
++|..|+++|. ++.+.++++.||++||+|..|+.+|.+..|+..++++||+ .||.++|+++|.+|++.+..
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~~ 73 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAESH 73 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCceee
Confidence 47999999997 8889999999999999999999999988899999999999 69999999999999987653
No 5
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.78 E-value=2.6e-19 Score=115.14 Aligned_cols=77 Identities=27% Similarity=0.678 Sum_probs=69.5
Q ss_pred ccccccccccccc-eeeecCcccccCCcccCCCCcccC--CCCeeccCCcccCHHhhhhhcCC--CCccCcccccc--Cc
Q psy2501 54 GCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELG--TRNFFERDSRPYCEPDYHNLFSP--RCSYCNGPILD--VS 126 (130)
Q Consensus 54 ~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~C~~~~~~~~~~--~C~~C~~~I~~--~~ 126 (130)
++|..|+++|.+. .+.++++.||++||+|..|+.+|. +..|+..+|++||+.||.++|++ +|..|+++|.+ .+
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~ 82 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMT 82 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEE
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcccee
Confidence 5799999999876 588999999999999999999996 35789999999999999999999 99999999986 46
Q ss_pred eeeC
Q psy2501 127 IRNT 130 (130)
Q Consensus 127 ~~~~ 130 (130)
|+|+
T Consensus 83 ~~a~ 86 (131)
T 2xjy_A 83 MRVK 86 (131)
T ss_dssp EEET
T ss_pred EeeC
Confidence 7764
No 6
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=5.7e-19 Score=101.97 Aligned_cols=67 Identities=31% Similarity=0.674 Sum_probs=62.3
Q ss_pred CCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
.+.++|..|+++|.++.+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 4567899999999988899999999999999999999998888999999999999999999999974
No 7
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=6.5e-19 Score=106.54 Aligned_cols=67 Identities=36% Similarity=0.809 Sum_probs=62.9
Q ss_pred CCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
...++|..|+++|.++++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 23 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 4567999999999999999999999999999999999999888999999999999999999999974
No 8
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=3e-19 Score=104.83 Aligned_cols=69 Identities=23% Similarity=0.545 Sum_probs=64.2
Q ss_pred CCCcccccccccccc----ceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCc
Q psy2501 51 TQKGCCSSCDKPIVG----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCN 119 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~ 119 (130)
.+.++|..|+++|.+ +.+.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|+++|+.++
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 355789999999986 889999999999999999999999988899999999999999999999999875
No 9
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=5.9e-19 Score=101.68 Aligned_cols=67 Identities=28% Similarity=0.622 Sum_probs=62.4
Q ss_pred CCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
.+.++|..|+++|.++.+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 4567899999999988899999999999999999999999888999999999999999999999963
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.1e-18 Score=103.25 Aligned_cols=73 Identities=32% Similarity=0.750 Sum_probs=66.2
Q ss_pred hcCCCCCCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 45 RQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 45 ~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
...+.....++|..|+++|.++.+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 7 ~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 7 GKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred hhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 4455556678999999999988899999999999999999999998888999999999999999999999974
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.76 E-value=4.7e-19 Score=105.16 Aligned_cols=71 Identities=18% Similarity=0.499 Sum_probs=56.1
Q ss_pred CCccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCcccc
Q psy2501 52 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPI 122 (130)
Q Consensus 52 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I 122 (130)
..++|..|+++|. ++.+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..|++..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 3578999999995 7789999999999999999999999888899999999999999999999999998764
No 12
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-18 Score=116.92 Aligned_cols=78 Identities=28% Similarity=0.718 Sum_probs=69.0
Q ss_pred CCCccccccccccccc-eeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC--ce
Q psy2501 51 TQKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV--SI 127 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~--~~ 127 (130)
...++|..|+++|.+. ++.++++.||++||+|..|+.+|.+.. +.++|++||+.||.++|+++|..|+++|.+. ++
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~ 136 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVR 136 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCC
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccccccccCCCccCCCceEE
Confidence 4568999999999865 578999999999999999999998766 4789999999999999999999999999863 55
Q ss_pred ee
Q psy2501 128 RN 129 (130)
Q Consensus 128 ~~ 129 (130)
+|
T Consensus 137 ~a 138 (182)
T 2jtn_A 137 RA 138 (182)
T ss_dssp EE
T ss_pred ec
Confidence 55
No 13
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.75 E-value=1.3e-18 Score=116.43 Aligned_cols=77 Identities=29% Similarity=0.727 Sum_probs=67.3
Q ss_pred CCccccccccccccc-eeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC--cee
Q psy2501 52 QKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV--SIR 128 (130)
Q Consensus 52 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~--~~~ 128 (130)
..++|..|+++|.+. ++.++++.||++||+|..|+.+|.+.. +.++|++||+.||.++|+++|..|+++|.+. +++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~ 83 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 83 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCcEEEE
Confidence 457899999999865 578999999999999999999998765 5889999999999999999999999999864 445
Q ss_pred e
Q psy2501 129 N 129 (130)
Q Consensus 129 ~ 129 (130)
|
T Consensus 84 a 84 (169)
T 2rgt_A 84 A 84 (169)
T ss_dssp E
T ss_pred c
Confidence 5
No 14
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.9e-18 Score=102.27 Aligned_cols=74 Identities=28% Similarity=0.568 Sum_probs=66.4
Q ss_pred hhcCCCCCCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 44 SRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 44 ~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
....+.....++|..|+++|.++.+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 6 SGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred cHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 34455556678999999999888899999999999999999999998888999999999999999999999974
No 15
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.8e-18 Score=100.33 Aligned_cols=67 Identities=33% Similarity=0.760 Sum_probs=61.7
Q ss_pred CCCccccccccccc--cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 51 TQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 51 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
.+..+|..|+++|. ++.+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 35678999999997 57889999999999999999999999888999999999999999999999974
No 16
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.7e-18 Score=101.73 Aligned_cols=66 Identities=36% Similarity=0.771 Sum_probs=60.5
Q ss_pred CCCccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 51 TQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 51 ~~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
...++|..|+++|. ++++.++++.||++||+|..|+.+|.+ .|+..++++||+.||.++|+++|++
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 45678999999996 788999999999999999999999985 6889999999999999999999974
No 17
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3.3e-18 Score=99.23 Aligned_cols=67 Identities=30% Similarity=0.738 Sum_probs=61.5
Q ss_pred CCCccccccccccc--cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 51 TQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 51 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
.+.++|..|+++|. +..+.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 35678999999997 46789999999999999999999999888999999999999999999999974
No 18
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3.1e-18 Score=107.81 Aligned_cols=73 Identities=22% Similarity=0.465 Sum_probs=64.1
Q ss_pred Cccccccccccccc-eeeecCcccccCCcccCCCCcccCC--CCeeccCCcccCHHhhhhhcCCCCccCccccccCcee
Q psy2501 53 KGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGT--RNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDVSIR 128 (130)
Q Consensus 53 ~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~~~~ 128 (130)
.++|..|+++|.+. ++.++++.||++||+|..|+.+|.. ..|+.+++++||+.||.++|+++|..|. .|.+|+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~---~~~~~~ 78 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS---GGDVMV 78 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB---SCSCCC
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC---CCceeE
Confidence 36899999999866 7899999999999999999999974 5789999999999999999999998885 344544
No 19
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.73 E-value=3e-20 Score=126.78 Aligned_cols=69 Identities=23% Similarity=0.613 Sum_probs=64.7
Q ss_pred ccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCcccc
Q psy2501 54 GCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPI 122 (130)
Q Consensus 54 ~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I 122 (130)
.+|..|+++|. ++.+.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|+++|..|+++|
T Consensus 116 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp EECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred CcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 46999999997 5778899999999999999999999888899999999999999999999999999985
No 20
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=4.6e-18 Score=100.83 Aligned_cols=72 Identities=28% Similarity=0.594 Sum_probs=63.3
Q ss_pred hcCCCCCCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeecc-CCcccCHHhhhhhcCCCCcc
Q psy2501 45 RQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFER-DSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 45 ~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~C~~~~~~~~~~~C~~ 117 (130)
...+. ...++|..|+++|.++++.++++.||++||+|..|+++|.+..|+.. ++++||+.||.++|+++|++
T Consensus 8 ~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 8 EGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred HHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 34444 46689999999999888999999999999999999999987777765 78999999999999999974
No 21
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.73 E-value=3.7e-18 Score=97.47 Aligned_cols=64 Identities=38% Similarity=0.918 Sum_probs=59.4
Q ss_pred CCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCC
Q psy2501 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~ 114 (130)
.+.++|..|+++|.++.+.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 3457899999999988899999999999999999999999888999999999999999999875
No 22
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.7e-18 Score=98.26 Aligned_cols=66 Identities=24% Similarity=0.595 Sum_probs=60.0
Q ss_pred CCCcccccccccccc----ceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCc
Q psy2501 51 TQKGCCSSCDKPIVG----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 116 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~ 116 (130)
.+..+|..|+++|.+ +++.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|+|++.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~g 72 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG 72 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCCC
Confidence 456789999999985 778899999999999999999999988888999999999999999998763
No 23
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.1e-18 Score=99.48 Aligned_cols=67 Identities=31% Similarity=0.722 Sum_probs=61.7
Q ss_pred CCCccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCH-HhhhhhcCCCCcc
Q psy2501 51 TQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCE-PDYHNLFSPRCSY 117 (130)
Q Consensus 51 ~~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~-~~~~~~~~~~C~~ 117 (130)
...++|..|+++|. ++.+.++++.||++||+|..|+.+|.+..|+..++++||+ .||.++|+++|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 34578999999997 7889999999999999999999999988899999999999 7999999999964
No 24
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.72 E-value=1.7e-18 Score=117.71 Aligned_cols=79 Identities=25% Similarity=0.635 Sum_probs=70.2
Q ss_pred CCccccccccccccc-eeeecCcccccCCcccCCCCcccCC--CCeeccCCcccCHHhhhhhcCC--CCccCcccccc--
Q psy2501 52 QKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGT--RNFFERDSRPYCEPDYHNLFSP--RCSYCNGPILD-- 124 (130)
Q Consensus 52 ~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~~C~~~~~~~~~~--~C~~C~~~I~~-- 124 (130)
..++|..|+++|.+. ++.++++.||++||+|..|+.+|.. ..|+.+++++||+.||.++|++ +|..|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 457899999999876 5789999999999999999999975 5789999999999999999998 79999999985
Q ss_pred CceeeC
Q psy2501 125 VSIRNT 130 (130)
Q Consensus 125 ~~~~~~ 130 (130)
.+|+|+
T Consensus 84 ~~i~a~ 89 (188)
T 1rut_X 84 LVMRAQ 89 (188)
T ss_dssp EEEEET
T ss_pred EEEEcC
Confidence 467763
No 25
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=6.7e-18 Score=99.11 Aligned_cols=67 Identities=27% Similarity=0.700 Sum_probs=59.4
Q ss_pred CCCCccccccccccc--cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCc
Q psy2501 50 TTQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 116 (130)
Q Consensus 50 ~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~ 116 (130)
.....+|..|+++|. +.++.++++.||++||+|..|+++|.++.|+..++++||+.||.++|+++|.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 345689999999995 5567899999999999999999999888899999999999999999999996
No 26
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1e-17 Score=96.72 Aligned_cols=66 Identities=30% Similarity=0.658 Sum_probs=60.6
Q ss_pred CCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCc
Q psy2501 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 116 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~ 116 (130)
.+..+|..|++.|.++++.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|+++..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 356789999999998889999999999999999999999988888999999999999999988654
No 27
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-18 Score=101.63 Aligned_cols=74 Identities=24% Similarity=0.411 Sum_probs=65.8
Q ss_pred hhcCCCCCCCccccccccccc--cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 44 SRQGVTTTQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 44 ~~~~~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
....+.....++|..|+++|. +.++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 6 C~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 6 SGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred chhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 344555667789999999997 67788999999999999999999999888999999999999999999999974
No 28
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.2e-17 Score=99.15 Aligned_cols=74 Identities=31% Similarity=0.586 Sum_probs=65.5
Q ss_pred hhcCCCCCCCccccccccccc--cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCcc
Q psy2501 44 SRQGVTTTQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117 (130)
Q Consensus 44 ~~~~~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~ 117 (130)
....+.....++|..|+++|. +.++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 6 SGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp CCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred chhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 344555566789999999997 66789999999999999999999998888999999999999999999998863
No 29
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.2e-17 Score=100.77 Aligned_cols=65 Identities=34% Similarity=0.642 Sum_probs=60.7
Q ss_pred CCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCc
Q psy2501 52 QKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 116 (130)
Q Consensus 52 ~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~ 116 (130)
...+|..|++.|.++++.++++.||++||+|..|++.|.+..|+..++++||+.||.++|++++.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45789999999998889999999999999999999999888899999999999999999999875
No 30
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.71 E-value=1.2e-17 Score=113.92 Aligned_cols=63 Identities=21% Similarity=0.597 Sum_probs=58.4
Q ss_pred CCccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCC
Q psy2501 52 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114 (130)
Q Consensus 52 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~ 114 (130)
+.++|..|+++|. ++.+.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|+++
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~ 69 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 69 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCcc
Confidence 4578999999996 77788999999999999999999999888999999999999999999886
No 31
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2.2e-17 Score=97.56 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=59.8
Q ss_pred CCCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCc
Q psy2501 50 TTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 116 (130)
Q Consensus 50 ~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~ 116 (130)
..+.++|..|++.|.++++.++++.||++||+|..|+.+|.+. ++.+++++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 12 GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTSCCSSC
T ss_pred ccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhCCCCCC
Confidence 3456899999999998889999999999999999999999876 45899999999999999998765
No 32
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=4.3e-17 Score=98.66 Aligned_cols=70 Identities=24% Similarity=0.604 Sum_probs=63.1
Q ss_pred CCCCccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCc
Q psy2501 50 TTQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCN 119 (130)
Q Consensus 50 ~~~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~ 119 (130)
.....+|..|++.|. .+.+.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|+++|..+.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~ 82 (91)
T 2d8y_A 12 APARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 82 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCS
T ss_pred CCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccC
Confidence 345679999999997 4778999999999999999999999888899999999999999999999998543
No 33
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=8.6e-18 Score=99.24 Aligned_cols=66 Identities=27% Similarity=0.580 Sum_probs=60.8
Q ss_pred CCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCc
Q psy2501 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCS 116 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~ 116 (130)
....+|..|++.|.++++.++++.||++||+|..|+.+|.+..|+..++++||+.||.++|++++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 345789999999998899999999999999999999999877899999999999999999999864
No 34
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.5e-17 Score=93.72 Aligned_cols=67 Identities=25% Similarity=0.645 Sum_probs=59.1
Q ss_pred CCCccccccccccc--cceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccC
Q psy2501 51 TQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYC 118 (130)
Q Consensus 51 ~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C 118 (130)
.+.++|..|+++|. +..+.++++.||++||+|..|+++|.+..|+..++++||+.||.++| .+|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 45679999999997 35789999999999999999999998888999999999999999988 556554
No 35
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.2e-16 Score=92.97 Aligned_cols=64 Identities=23% Similarity=0.470 Sum_probs=58.0
Q ss_pred CCCccccccccccccceeeecCcccccCCcccCCCCcccC-CCCeeccCCcccCHHhhhhhcCCC
Q psy2501 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELG-TRNFFERDSRPYCEPDYHNLFSPR 114 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~~~~~~~~~~ 114 (130)
.+.++|..|+++|.++++.++++.||++||+|..|+.+|. +..|+..++++||..||.++++..
T Consensus 3 ~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 3567999999999998999999999999999999999998 667889999999999999887653
No 36
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.6e-16 Score=94.15 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=63.4
Q ss_pred hhcCCCCCCCccccccccccccceeeecCcccccCCcccCCCCcccCC-CCee-ccCCcccCHHhhhhhcCCCCc
Q psy2501 44 SRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGT-RNFF-ERDSRPYCEPDYHNLFSPRCS 116 (130)
Q Consensus 44 ~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~~~~~C~~~~~~~~~~~C~ 116 (130)
....+.....++|..|+++|.++.+.++++.||++||+|..|+++|.. ..|+ ..++++||+.||.++|++.|+
T Consensus 6 C~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 6 SGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred chhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 344566667789999999999888999999999999999999999964 5666 589999999999999998775
No 37
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.63 E-value=2.6e-16 Score=90.98 Aligned_cols=65 Identities=26% Similarity=0.722 Sum_probs=57.2
Q ss_pred CCCCCCccccccccccc-cc-eeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcC
Q psy2501 48 VTTTQKGCCSSCDKPIV-GQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112 (130)
Q Consensus 48 ~~~~~~~~C~~C~~~i~-~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~ 112 (130)
+......+|..|+++|. ++ .+.++++.||++||+|..|+++|.++.|+..++++||+.||.++|+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 34456789999999997 33 5689999999999999999999988888999999999999999875
No 38
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=90.96 Aligned_cols=66 Identities=26% Similarity=0.599 Sum_probs=58.4
Q ss_pred hhcCCCCCCCcccccccccccc-----ceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhh
Q psy2501 44 SRQGVTTTQKGCCSSCDKPIVG-----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHN 109 (130)
Q Consensus 44 ~~~~~~~~~~~~C~~C~~~i~~-----~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~ 109 (130)
....+.....++|..|+++|.+ +.+.++++.||++||+|..|+++|.+..|+..++++||+.||.+
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 6 SGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred chhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 3445555667899999999986 77999999999999999999999998889999999999999965
No 39
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.62 E-value=2e-16 Score=100.78 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=62.2
Q ss_pred cccccccccc--cceeeecCcccccCCcccCCCCcccC-CCCeeccCCcccCHHhhhhhcCCCCccCccccc
Q psy2501 55 CCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELG-TRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL 123 (130)
Q Consensus 55 ~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~ 123 (130)
+|..|++.|. +..+.++++.||..||+|..|+++|. +..|+..++++||..||.++++++|..++.++.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 8999999997 46678999999999999999999994 557889999999999999999999998877654
No 40
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.61 E-value=6.1e-16 Score=98.52 Aligned_cols=62 Identities=24% Similarity=0.633 Sum_probs=55.6
Q ss_pred CCCccccccccccccc-eeeecCcccccCCcccCCCCcccC--CCCeeccCCcccCHHhhhhhcC
Q psy2501 51 TQKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELG--TRNFFERDSRPYCEPDYHNLFS 112 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~-~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~~C~~~~~~~~~ 112 (130)
...++|..|+++|.+. ++.++++.||++||+|..|+.+|. +..|+.+++++||+.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3457999999999865 589999999999999999999996 4579999999999999999885
No 41
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=87.05 Aligned_cols=58 Identities=24% Similarity=0.535 Sum_probs=53.2
Q ss_pred Cccccccccccc--cceeeecCcccc--cCCcccCCCCcccCCCCeeccCCcccC-HHhhhhh
Q psy2501 53 KGCCSSCDKPIV--GQVITALGKTWH--PEHFICTHCNQELGTRNFFERDSRPYC-EPDYHNL 110 (130)
Q Consensus 53 ~~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~C-~~~~~~~ 110 (130)
.++|..|+++|. ++.+.++++.|| ++||+|..|+++|.+..|+..++++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 468999999997 688999999999 999999999999998889999999999 8998654
No 42
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.4e-15 Score=90.26 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=56.5
Q ss_pred CCccccccccccc-cceeeecCcccccCCcccCCCCcccCCCCee--ccCCcccCHHhhhhhcCCCC
Q psy2501 52 QKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFF--ERDSRPYCEPDYHNLFSPRC 115 (130)
Q Consensus 52 ~~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~~~~~C~~~~~~~~~~~C 115 (130)
...+|..|++.|. .+.+.++++.||.+||+|..|+++|....|+ ..++++||+.||.++++.-+
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 4578999999995 6778899999999999999999999888877 47999999999999887643
No 43
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.58 E-value=2.6e-17 Score=111.89 Aligned_cols=107 Identities=19% Similarity=0.304 Sum_probs=75.4
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHH-h-------hhcCCCCCCCc--cccccccccc--cceeeecCcccccCCcc
Q psy2501 14 SSVSYSKPNQPVHQKGKQLDCMLDSLTAE-M-------SRQGVTTTQKG--CCSSCDKPIV--GQVITALGKTWHPEHFI 81 (130)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~--~C~~C~~~i~--~~~~~~~~~~~H~~Cf~ 81 (130)
.+.++++.||+.||.+..+...+...... + +...+...+.+ +|..|+++|. +.++.++++.||++||+
T Consensus 20 ~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~ 99 (188)
T 1rut_X 20 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFT 99 (188)
T ss_dssp EEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCB
T ss_pred eEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCe
Confidence 46789999999999777666544431111 1 12222222334 7999999996 35678999999999999
Q ss_pred cCCCCcccC-CCCeeccCCcccCHHhhhhhcCCCCccCcc
Q psy2501 82 CTHCNQELG-TRNFFERDSRPYCEPDYHNLFSPRCSYCNG 120 (130)
Q Consensus 82 C~~C~~~l~-~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~ 120 (130)
|..|+++|. +..|+..++++||+.||.++++++|...+.
T Consensus 100 C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 100 CSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp CTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred ECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 999999995 556889999999999999999999987654
No 44
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.56 E-value=1.1e-17 Score=107.47 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=73.9
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHH--------hhhcCCCCCCCc--ccccccccccc--ceeeecCcccccCCcc
Q psy2501 14 SSVSYSKPNQPVHQKGKQLDCMLDSLTAE--------MSRQGVTTTQKG--CCSSCDKPIVG--QVITALGKTWHPEHFI 81 (130)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~C~~C~~~i~~--~~~~~~~~~~H~~Cf~ 81 (130)
.+.++++.||+.+|.+..++..+...... +....+.....+ +|..|+++|.+ ..+.++++.||++||+
T Consensus 17 ~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~ 96 (131)
T 2xjy_A 17 FLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFK 96 (131)
T ss_dssp EEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCB
T ss_pred EEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcc
Confidence 57899999999999776665433210000 011112222334 89999999974 5688999999999999
Q ss_pred cCCCCcccC-CCCeeccCCcccCHHhhhhhcC
Q psy2501 82 CTHCNQELG-TRNFFERDSRPYCEPDYHNLFS 112 (130)
Q Consensus 82 C~~C~~~l~-~~~~~~~~~~~~C~~~~~~~~~ 112 (130)
|..|+++|. +..|+..++++||..||.++++
T Consensus 97 C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 97 CAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp CTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred cCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 999999995 5678899999999999998875
No 45
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.54 E-value=3.3e-17 Score=104.62 Aligned_cols=99 Identities=17% Similarity=0.321 Sum_probs=75.7
Q ss_pred CcccCCCCCCCCCCCchhHHHHHHHHHH------HHhhhcCCCCCCCccccccccccc--cceeeecCcccc--cCCccc
Q psy2501 13 SSSVSYSKPNQPVHQKGKQLDCMLDSLT------AEMSRQGVTTTQKGCCSSCDKPIV--GQVITALGKTWH--PEHFIC 82 (130)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H--~~Cf~C 82 (130)
..+.++++.||+.+|.+..+...+.... ..+....+.....++|..|+++|. +..+.++++.|| ++||+|
T Consensus 17 ~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C 96 (126)
T 2xqn_T 17 EYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLC 96 (126)
T ss_dssp CEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBC
T ss_pred eEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCc
Confidence 4677999999999997665554332110 001122223345679999999997 567899999999 999999
Q ss_pred CCCCcccCCCCeeccCCcccCHHhhhhhc
Q psy2501 83 THCNQELGTRNFFERDSRPYCEPDYHNLF 111 (130)
Q Consensus 83 ~~C~~~l~~~~~~~~~~~~~C~~~~~~~~ 111 (130)
..|+++|.+..|+..++++||..+|.++|
T Consensus 97 ~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 97 SCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 99999999888889999999998887765
No 46
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.4e-14 Score=85.71 Aligned_cols=68 Identities=26% Similarity=0.478 Sum_probs=56.4
Q ss_pred hcCCCCCCCccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCC-cccCHHhhhhhcC
Q psy2501 45 RQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDS-RPYCEPDYHNLFS 112 (130)
Q Consensus 45 ~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~~~~~~~~ 112 (130)
...+...+.++|..|+++|.++.+.++++.||++||+|..|+++|..+.++..++ .+||..||.+++.
T Consensus 7 ~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 7 GLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred hHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 3444556678999999999988999999999999999999999998666665555 5799999987663
No 47
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.41 E-value=2.4e-15 Score=101.61 Aligned_cols=98 Identities=20% Similarity=0.298 Sum_probs=71.1
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHHh-----hhcCCCCCCCcccccccccccc--ceeeecCcccccCCcccCCCC
Q psy2501 14 SSVSYSKPNQPVHQKGKQLDCMLDSLTAEM-----SRQGVTTTQKGCCSSCDKPIVG--QVITALGKTWHPEHFICTHCN 86 (130)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~ 86 (130)
.+.++++.||+.+|.+..+...+....... +...+...+.++|..|+++|.+ ..+.+.++.||+.||+|..|+
T Consensus 75 ~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~ 154 (182)
T 2jtn_A 75 ILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 154 (182)
T ss_dssp EEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTC
T ss_pred eEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCC
Confidence 356889999999997665554332211111 2222334566899999999963 356899999999999999999
Q ss_pred cccCC-CCee-ccCCcccCHHhhhhhc
Q psy2501 87 QELGT-RNFF-ERDSRPYCEPDYHNLF 111 (130)
Q Consensus 87 ~~l~~-~~~~-~~~~~~~C~~~~~~~~ 111 (130)
++|.. ..|+ ..++++||+.||.++.
T Consensus 155 ~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 155 RQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp CCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred CCCCCCCceEEccCCEEECHHHHHHhh
Confidence 99974 4565 5689999999997653
No 48
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.41 E-value=2.1e-15 Score=100.85 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=72.6
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHHh-----hhcCCCCCCCcccccccccccc--ceeeecCcccccCCcccCCCC
Q psy2501 14 SSVSYSKPNQPVHQKGKQLDCMLDSLTAEM-----SRQGVTTTQKGCCSSCDKPIVG--QVITALGKTWHPEHFICTHCN 86 (130)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~C~~C~~~i~~--~~~~~~~~~~H~~Cf~C~~C~ 86 (130)
.+.++++.||+.+|.+..+...+....... +...+...+.++|..|++.|.+ .++.++++.||.+||+|..|+
T Consensus 21 ~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~ 100 (169)
T 2rgt_A 21 ILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 100 (169)
T ss_dssp CEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTC
T ss_pred EEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCC
Confidence 467899999999997666553332211000 1111222345789999999964 346899999999999999999
Q ss_pred cccC-CCCee-ccCCcccCHHhhhhhcCCCC
Q psy2501 87 QELG-TRNFF-ERDSRPYCEPDYHNLFSPRC 115 (130)
Q Consensus 87 ~~l~-~~~~~-~~~~~~~C~~~~~~~~~~~C 115 (130)
+.|. +..|+ ..++++||+.||.+.+...+
T Consensus 101 ~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~ 131 (169)
T 2rgt_A 101 RQLATGDEFYLMEDSRLVCKADYETAKQGGS 131 (169)
T ss_dssp CBCCTTCEEEECTTSCEEEHHHHHHHHHCC-
T ss_pred CCCCCCCceEEccCCeEECHHHHHHHhhccC
Confidence 9997 44565 56899999999998875543
No 49
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.97 E-value=6.1e-12 Score=77.03 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=54.9
Q ss_pred CCcccCCCCCCCCCCCchhHHHHHHHHH------HHHhhhcCCCCCCCccccccccccc--cceeeecCcccccCCcccC
Q psy2501 12 DSSSVSYSKPNQPVHQKGKQLDCMLDSL------TAEMSRQGVTTTQKGCCSSCDKPIV--GQVITALGKTWHPEHFICT 83 (130)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~C~~C~~~i~--~~~~~~~~~~~H~~Cf~C~ 83 (130)
...+.++++.||+.+|.+..+...+... ...+....+.....++|..|+++|. +..+.++++.||++||+|.
T Consensus 19 ~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~ 98 (101)
T 2cup_A 19 SKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGP 98 (101)
T ss_dssp SCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCT
T ss_pred ceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEEEeCCcchHHhCCCCC
Confidence 5667889999999999665554433211 0011233345567789999999997 5689999999999999999
Q ss_pred CCC
Q psy2501 84 HCN 86 (130)
Q Consensus 84 ~C~ 86 (130)
.|+
T Consensus 99 ~C~ 101 (101)
T 2cup_A 99 SSG 101 (101)
T ss_dssp TCC
T ss_pred CCC
Confidence 985
No 50
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.37 E-value=9.3e-08 Score=55.73 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=30.0
Q ss_pred CCcccCHHhhhhhcCCCCccCccccccCceeeC
Q psy2501 98 DSRPYCEPDYHNLFSPRCSYCNGPILDVSIRNT 130 (130)
Q Consensus 98 ~~~~~C~~~~~~~~~~~C~~C~~~I~~~~~~~~ 130 (130)
+|++||+.||.++++++|..|+++|.+++|+|+
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~ 33 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYR 33 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESS
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEEC
Confidence 578999999999999999999999999988874
No 51
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.3e-07 Score=54.75 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=29.4
Q ss_pred CCcccCHHhhhhhcCCCCccCcccccc-----CceeeC
Q psy2501 98 DSRPYCEPDYHNLFSPRCSYCNGPILD-----VSIRNT 130 (130)
Q Consensus 98 ~~~~~C~~~~~~~~~~~C~~C~~~I~~-----~~~~~~ 130 (130)
++++||+.||.++++++|.+|+++|.+ ++|+|+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~ 38 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYE 38 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEET
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEEC
Confidence 468999999999999999999999997 778774
No 52
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=9.8e-08 Score=55.63 Aligned_cols=33 Identities=30% Similarity=0.651 Sum_probs=30.2
Q ss_pred CCcccCHHhhhhhcCCCCccCccccccCceeeC
Q psy2501 98 DSRPYCEPDYHNLFSPRCSYCNGPILDVSIRNT 130 (130)
Q Consensus 98 ~~~~~C~~~~~~~~~~~C~~C~~~I~~~~~~~~ 130 (130)
++++||+.||.++++++|..|+++|.+++|+|+
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~ 33 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAM 33 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEET
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEEC
Confidence 478999999999999999999999999999875
No 53
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.33 E-value=1e-07 Score=55.70 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCcccCHHhhhhhcCCCCccCccccccCceeeC
Q psy2501 98 DSRPYCEPDYHNLFSPRCSYCNGPILDVSIRNT 130 (130)
Q Consensus 98 ~~~~~C~~~~~~~~~~~C~~C~~~I~~~~~~~~ 130 (130)
++.+||+.||.++|+++|..|+++|.+++|+|+
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~ 33 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAG 33 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCT
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceEEEEC
Confidence 367899999999999999999999999998874
No 54
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.31 E-value=2.2e-07 Score=54.30 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=29.5
Q ss_pred CcccCHHhhhhhcCCCCccCccccccCceeeC
Q psy2501 99 SRPYCEPDYHNLFSPRCSYCNGPILDVSIRNT 130 (130)
Q Consensus 99 ~~~~C~~~~~~~~~~~C~~C~~~I~~~~~~~~ 130 (130)
+.+||+.||.++|+++|..|+++|.+++|+|+
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~ 33 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSAL 33 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEET
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEEC
Confidence 46899999999999999999999999999885
No 55
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.1e-07 Score=55.78 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCcccCHHhhhhhcCCCCccCccccc--cCceeeC
Q psy2501 98 DSRPYCEPDYHNLFSPRCSYCNGPIL--DVSIRNT 130 (130)
Q Consensus 98 ~~~~~C~~~~~~~~~~~C~~C~~~I~--~~~~~~~ 130 (130)
+|++||+.||.++|+++|..|+++|. +.+|+|+
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~ 35 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYE 35 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCS
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeC
Confidence 57899999999999999999999998 7777763
No 56
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.18 E-value=4.8e-07 Score=52.81 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=28.4
Q ss_pred CCcccCHHhhhhhcCCCCccCccccccCceeeC
Q psy2501 98 DSRPYCEPDYHNLFSPRCSYCNGPILDVSIRNT 130 (130)
Q Consensus 98 ~~~~~C~~~~~~~~~~~C~~C~~~I~~~~~~~~ 130 (130)
++++||+.||. +++++|..|+++|.+++|+|+
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~ 33 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAM 33 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEET
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEEC
Confidence 67899999998 788999999999999988875
No 57
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.15 E-value=2.3e-09 Score=67.78 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=57.6
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHH--------HHHhhhcCCCCCCCc--cccccccccccceeeecCcccccCCcccC
Q psy2501 14 SSVSYSKPNQPVHQKGKQLDCMLDSL--------TAEMSRQGVTTTQKG--CCSSCDKPIVGQVITALGKTWHPEHFICT 83 (130)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~ 83 (130)
.+.++++.||+.+|.+..+...+... ...++...+...+.+ +|..|+++|.+..+.++++
T Consensus 20 ~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~~~g~---------- 89 (122)
T 1m3v_A 20 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVVGE---------- 89 (122)
T ss_dssp CEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESSSSSS----------
T ss_pred EEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheEEcCC----------
Confidence 47789999999999666555433210 000111222223334 8999999998655555543
Q ss_pred CCCcccCCCCeeccCCcccCHHhhhhhcCC
Q psy2501 84 HCNQELGTRNFFERDSRPYCEPDYHNLFSP 113 (130)
Q Consensus 84 ~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~ 113 (130)
..|.+..|+.+++++||..||.+++.+
T Consensus 90 ---~~l~g~~f~~~~~~~yC~~~~~~~~~~ 116 (122)
T 1m3v_A 90 ---PTLMGGEFGDEDERLITRLENTQFDAA 116 (122)
T ss_dssp ---SSCCSCTTCCTTCCCCEECTTTTTTCC
T ss_pred ---cCCCCCccEecCCEeEccCcchhchhh
Confidence 356777899999999999999887643
No 58
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.11 E-value=6.2e-07 Score=52.40 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCcccCHHhhhhhcCCCCccCccccc--cCceeeC
Q psy2501 98 DSRPYCEPDYHNLFSPRCSYCNGPIL--DVSIRNT 130 (130)
Q Consensus 98 ~~~~~C~~~~~~~~~~~C~~C~~~I~--~~~~~~~ 130 (130)
++.+||+.||.++++++|..|+++|. +++|+|+
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~ 35 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYK 35 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECS
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEEC
Confidence 46789999999999999999999998 6777764
No 59
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.07 E-value=1.2e-06 Score=41.92 Aligned_cols=28 Identities=29% Similarity=0.684 Sum_probs=24.9
Q ss_pred Cccccccccccc-cceeeecCcccccCCc
Q psy2501 53 KGCCSSCDKPIV-GQVITALGKTWHPEHF 80 (130)
Q Consensus 53 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf 80 (130)
..+|..|++.|+ .+.+.+.++.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 468999999996 6888899999999998
No 60
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=97.26 E-value=7.8e-05 Score=46.12 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=48.9
Q ss_pred CCCCC-cccCCCCCCCCCCCchhHHHHHHHHHHHHhhhcCCCCCCCcccccccccccccee--eecCcccccCCcccCCC
Q psy2501 9 SVTDS-SSVSYSKPNQPVHQKGKQLDCMLDSLTAEMSRQGVTTTQKGCCSSCDKPIVGQVI--TALGKTWHPEHFICTHC 85 (130)
Q Consensus 9 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~i~~~~~--~~~~~~~H~~Cf~C~~C 85 (130)
++.+. .+.++++.||+.+|.+..+...+.... ...+...+...|..|.....+..- ...+.. . .|
T Consensus 12 ~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g----~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~~-----~---~~ 79 (114)
T 1j2o_A 12 NIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVG----RRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDV-----M---VV 79 (114)
T ss_dssp CBCSSEEEECSSSEECTTTCCCSSSCSCCCCSS----SCCCCBTTBCCCHHHHHHHHTSCCSSCBSCSC-----C---CS
T ss_pred eeCCcEEEEECchhHHHhcCcccccCCchhcCC----CeeEEECCeeechHHHHHHhCcccCcCCCCce-----e---Ec
Confidence 34444 678899999999997666554332100 001111222334443333221110 000111 1 13
Q ss_pred Ccc-cCCCCeeccCCcccCHHhhhhhcCC
Q psy2501 86 NQE-LGTRNFFERDSRPYCEPDYHNLFSP 113 (130)
Q Consensus 86 ~~~-l~~~~~~~~~~~~~C~~~~~~~~~~ 113 (130)
+.. |.+..|+..++++||..||.++..+
T Consensus 80 ~~~~~~g~~f~~~~~~~~C~~~~~~~~~~ 108 (114)
T 1j2o_A 80 GEPTLMGGEFGDEDERLITRLENTQFDAA 108 (114)
T ss_dssp SCSSTTSSBCCCSSSCCCEEEECTTCCCT
T ss_pred CCccCCCCeeEEcCCEeecchhhhccccc
Confidence 344 4566888999999999999877543
No 61
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.85 E-value=0.015 Score=32.06 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=12.0
Q ss_pred cCCCCccCccccccCceee
Q psy2501 111 FSPRCSYCNGPILDVSIRN 129 (130)
Q Consensus 111 ~~~~C~~C~~~I~~~~~~~ 129 (130)
++++|..|+++|.+++|+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~a 22 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITY 22 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEE
T ss_pred CcCCCcccCCEeCcceEEE
Confidence 4566666666666666655
No 62
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=94.82 E-value=0.0063 Score=33.39 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=10.1
Q ss_pred cCCCCccCccccccCceee
Q psy2501 111 FSPRCSYCNGPILDVSIRN 129 (130)
Q Consensus 111 ~~~~C~~C~~~I~~~~~~~ 129 (130)
++++|.+|+++|.+++|+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~a 22 (66)
T 1nyp_A 4 GVPICGACRRPIEGRVVNA 22 (66)
T ss_dssp CCCEETTTTEECCSCEECC
T ss_pred CCCCCcccCCEecceEEEE
Confidence 4455555555555555544
No 63
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.55 E-value=0.013 Score=34.27 Aligned_cols=39 Identities=21% Similarity=0.629 Sum_probs=27.9
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|+..+. ..+....++.|...|| +|..|+++|.+.
T Consensus 26 ~~C~~C~~~I~-~~~v~a~~~~~H~~CF------~C~~C~~~L~~~ 64 (90)
T 2dar_A 26 PMCAHCNQVIR-GPFLVALGKSWHPEEF------NCAHCKNTMAYI 64 (90)
T ss_dssp CBBSSSCCBCC-SCEEEETTEEECTTTC------BCSSSCCBCSSS
T ss_pred CCCccCCCEec-ceEEEECCccccccCC------ccCCCCCCCCCC
Confidence 46788888885 3455666778777775 688888887653
No 64
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.45 E-value=0.035 Score=31.10 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=16.1
Q ss_pred CCCCCcccCCCCCCCCCCCc
Q psy2501 9 SVTDSSSVSYSKPNQPVHQK 28 (130)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (130)
++.+..+.++++.||+++|.
T Consensus 14 ~I~~~~v~a~~~~wH~~CF~ 33 (73)
T 1wig_A 14 YITGRVLEAGEKHYHPSCAL 33 (73)
T ss_dssp CCSSCCBCCSSCCBCTTTSC
T ss_pred EecCeeEEeCCCCCCCCcCE
Confidence 44557788999999999985
No 65
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=93.16 E-value=0.033 Score=31.74 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=8.4
Q ss_pred CCCccCccccccCceee
Q psy2501 113 PRCSYCNGPILDVSIRN 129 (130)
Q Consensus 113 ~~C~~C~~~I~~~~~~~ 129 (130)
++|..|+++|.+++|+|
T Consensus 16 ~~C~~C~~~I~~~~v~a 32 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIF 32 (79)
T ss_dssp CBCTTTCCBCCSCCCCC
T ss_pred CCCccCCCEecceEEEE
Confidence 44555555555544444
No 66
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.87 E-value=0.091 Score=29.95 Aligned_cols=41 Identities=12% Similarity=0.320 Sum_probs=30.8
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccCc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDVS 126 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~~ 126 (130)
.+|..|+.++....+....++.|...|| +|..|++++.+.+
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF------~C~~C~~~L~~~~ 56 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVSCF------KCQTCSVILTGEY 56 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTTTC------BCSSSCCBCSSCC
T ss_pred CCCcCcCCeeCCCeEEEECCcccccccC------CcCcCCCCcCCCe
Confidence 4688899988755566667788887775 6888988887654
No 67
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.56 E-value=0.064 Score=30.40 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=14.6
Q ss_pred CCCCccCccccccCceeeC
Q psy2501 112 SPRCSYCNGPILDVSIRNT 130 (130)
Q Consensus 112 ~~~C~~C~~~I~~~~~~~~ 130 (130)
.++|..|+++|.+++|+|+
T Consensus 15 ~~~C~~C~~~I~~~~~~a~ 33 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLR 33 (79)
T ss_dssp CCCCSSSCCCCCSSCEECS
T ss_pred CCccccCCCCccCcEEEEC
Confidence 4688888888888877764
No 68
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.78 E-value=0.1 Score=29.20 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=30.3
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|+.++...+.....++.|...|| +|..|+++|.+.
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCL------KCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTC------BCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCC------CCCCCCCccCCC
Confidence 4788899998755666667788877775 588898888754
No 69
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.07 E-value=0.16 Score=28.97 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=28.8
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|++.+...+.....++.|...|| +|..|++++.+.
T Consensus 16 ~~C~~C~~~I~~~e~v~a~~~~wH~~CF------~C~~C~~~L~~~ 55 (82)
T 2co8_A 16 DLCALCGEHLYVLERLCVNGHFFHRSCF------RCHTCEATLWPG 55 (82)
T ss_dssp CBCSSSCCBCCTTTBCCBTTBCCBTTTC------BCSSSCCBCCTT
T ss_pred CCCcccCCCcccceEEEECCCeeCCCcC------EEcCCCCCcCCC
Confidence 4688899988655555566777777774 688888887654
No 70
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=90.28 E-value=0.13 Score=28.70 Aligned_cols=39 Identities=15% Similarity=0.422 Sum_probs=28.9
Q ss_pred ccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 81 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 81 ~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
+|..|+.++....+....++.|...|| +|..|++++.+.
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF------~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCL------KCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTC------BCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEECCccccCCCC------CccccCccCCCC
Confidence 578899988755556666788777775 588899888754
No 71
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=90.16 E-value=0.14 Score=29.67 Aligned_cols=17 Identities=24% Similarity=0.716 Sum_probs=9.8
Q ss_pred CCCccCccccccCceee
Q psy2501 113 PRCSYCNGPILDVSIRN 129 (130)
Q Consensus 113 ~~C~~C~~~I~~~~~~~ 129 (130)
++|..|+++|.+++|+|
T Consensus 26 ~~C~~C~~~I~~~~~~a 42 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKA 42 (89)
T ss_dssp CBCTTTCCBCCSCCEES
T ss_pred CCcccCCCEecccEEEE
Confidence 45666666666555554
No 72
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=90.03 E-value=0.13 Score=28.21 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=5.6
Q ss_pred ccCCCCcccC
Q psy2501 81 ICTHCNQELG 90 (130)
Q Consensus 81 ~C~~C~~~l~ 90 (130)
+|..|+..+.
T Consensus 13 ~C~~C~~~i~ 22 (72)
T 3f6q_B 13 TCERCKGGFA 22 (72)
T ss_dssp BCTTTCCBCC
T ss_pred cchhcCcccc
Confidence 4555666554
No 73
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=89.71 E-value=0.16 Score=27.48 Aligned_cols=39 Identities=13% Similarity=0.438 Sum_probs=28.5
Q ss_pred ccCCCCcccCC-CCeeccCCcccC--HHhhhhhcCCCCccCccccccC
Q psy2501 81 ICTHCNQELGT-RNFFERDSRPYC--EPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 81 ~C~~C~~~l~~-~~~~~~~~~~~C--~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
+|..|+.++.. .......++.|- ..|| +|..|+++|.+.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECF------LCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTS------BCTTTCCBCTTS
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCE------ECCCCCCcCCCC
Confidence 57888888864 355566677777 7775 688898888765
No 74
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=89.54 E-value=0.13 Score=29.09 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=29.3
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|+.++.........++.|...|| +|..|+++|.+.
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCF------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSE------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEEeCCcccccccC------ccCCCCCCCCCC
Confidence 4788899998655556667777777775 588888887654
No 75
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.50 E-value=0.25 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=28.7
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|+..+.+ .+....++.|...|| +|..|+++|.+.
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIKAMNNSWHPECF------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CCEEETTEEECTTTS------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eEEEECcccccccCC------EeCCCCCcCCCC
Confidence 367888888864 455667788887775 688898888654
No 76
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.44 E-value=0.25 Score=27.21 Aligned_cols=40 Identities=13% Similarity=0.456 Sum_probs=28.7
Q ss_pred cccCCCCcccCC---CCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGT---RNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~---~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|+.++.+ ..+....++.|...|| +|..|+++|.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF------NCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC------BCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC------EeccCCCcCCCC
Confidence 368888988874 3444556778877775 688888888654
No 77
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.28 E-value=0.22 Score=28.85 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=29.7
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|+..+.........++.|...|| +|..|+++|.+.
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFHISCF------RCSYCNNKLSLG 55 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEETTTC------BCTTTCCBCCTT
T ss_pred CcCccCCCccCCceeEEECCCEECCCCC------eeCCCCCCCCCC
Confidence 4788999998765566667777777775 588888887653
No 78
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.16 E-value=0.26 Score=27.05 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=28.2
Q ss_pred ccCCCCcccCCC-CeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 81 ICTHCNQELGTR-NFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 81 ~C~~C~~~l~~~-~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
+|..|+.++... ......++.|...|| +|..|+++|.+.
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHCF------LCSGCEQPLGSR 46 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTTC------BCTTTCCBTTTS
T ss_pred CCccCCCccccCccEEEECccccCcccC------eECCCCCcCCCC
Confidence 678888888753 455666777777775 588888888754
No 79
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.13 E-value=0.31 Score=26.74 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=28.5
Q ss_pred ccCCCCcccCCC-CeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 81 ICTHCNQELGTR-NFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 81 ~C~~C~~~l~~~-~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
+|..|+.++... ......++.|...|| +|..|++++.+.
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETCF------ICHRCQQPIGTK 46 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTTT------CCSSSCCCCCSS
T ss_pred CCccCCCcccCCceEEEECcCeecccCC------cccccCCccCCC
Confidence 678888888754 345567788877775 588888888654
No 80
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=88.94 E-value=0.28 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=28.6
Q ss_pred cccCCCCcccCCC-CeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 80 FICTHCNQELGTR-NFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~-~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
-+|..|+.++... ......++.|...|| +|..|++++.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF------~C~~C~~~L~~~ 46 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCF------VCSTCRAQLRGQ 46 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTC------BCSSSCCBCTTS
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCC------cccccCCcCCcC
Confidence 3678888888653 344566778877775 588899888654
No 81
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=88.87 E-value=0.31 Score=27.16 Aligned_cols=39 Identities=13% Similarity=0.443 Sum_probs=27.8
Q ss_pred ccCCCCcccCC---CCeeccCCcccCHHhhhhhcCCCCccCccccccC
Q psy2501 81 ICTHCNQELGT---RNFFERDSRPYCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 81 ~C~~C~~~l~~---~~~~~~~~~~~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
+|..|+.++.+ ..+....++.|...|| +|..|+.++.+.
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF------~C~~C~~~L~~~ 48 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWHSECF------NCGKCSVSLVGK 48 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEEGGGC------BCTTTCCBCSSS
T ss_pred CCccCCCcccCCCCceeEEECCcccCcccC------ChhhCCCcCCCC
Confidence 56778888764 3555667788877775 688888887654
No 82
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=87.98 E-value=0.28 Score=27.31 Aligned_cols=9 Identities=22% Similarity=0.885 Sum_probs=4.0
Q ss_pred ccCCCCccc
Q psy2501 81 ICTHCNQEL 89 (130)
Q Consensus 81 ~C~~C~~~l 89 (130)
+|..|+..+
T Consensus 13 ~C~~C~~~I 21 (77)
T 1g47_A 13 TCERCKGGF 21 (77)
T ss_dssp BCSSSCCBC
T ss_pred CchhcCCcc
Confidence 344444444
No 83
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=87.55 E-value=0.28 Score=30.38 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=11.1
Q ss_pred cCCCCccCccccccCc-eee
Q psy2501 111 FSPRCSYCNGPILDVS-IRN 129 (130)
Q Consensus 111 ~~~~C~~C~~~I~~~~-~~~ 129 (130)
++++|..|+++|.+.. |+|
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a 79 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYA 79 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEE
T ss_pred cCCcCcCCCCCcCCcEEEEe
Confidence 3456666666666553 554
No 84
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.04 E-value=2.1 Score=23.16 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=31.1
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC-----CCCccCccccccCc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS-----PRCSYCNGPILDVS 126 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~-----~~C~~C~~~I~~~~ 126 (130)
+.|..|...+... ....=|..||..|..+.+. ..|-.|.++|...-
T Consensus 21 ~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 21 VICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CEeccCCcccCCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 5667777666532 2234567789999877663 37999999887543
No 85
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.74 E-value=2.3 Score=25.64 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=5.9
Q ss_pred ccccccccccc
Q psy2501 55 CCSSCDKPIVG 65 (130)
Q Consensus 55 ~C~~C~~~i~~ 65 (130)
.|.-|...+..
T Consensus 24 ~C~IC~~~~~~ 34 (117)
T 1jm7_B 24 RCSRCTNILRE 34 (117)
T ss_dssp SCSSSCSCCSS
T ss_pred CCCCCChHhhC
Confidence 36666555543
No 86
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=78.49 E-value=1.3 Score=27.13 Aligned_cols=39 Identities=13% Similarity=0.511 Sum_probs=26.3
Q ss_pred ccCCCCcccCCCC-eeccCCcccCHHhhhhhcCCCCccCcccc-ccC
Q psy2501 81 ICTHCNQELGTRN-FFERDSRPYCEPDYHNLFSPRCSYCNGPI-LDV 125 (130)
Q Consensus 81 ~C~~C~~~l~~~~-~~~~~~~~~C~~~~~~~~~~~C~~C~~~I-~~~ 125 (130)
+|..|+..+.... .....++.|...|| +|..|+++| .|.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF------~C~~C~~~L~~g~ 50 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECF------KCAACQKHFSVGD 50 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTC------BCTTTCCBCCTTC
T ss_pred cccCCCCeecCCceEEEECCcccccccC------ccccCCCCCCCCC
Confidence 5788888886433 33455677777775 588888888 443
No 87
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.76 E-value=2.8 Score=22.24 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=30.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc---CCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~---~~~C~~C~~~I~~~ 125 (130)
+.|..|...+.... ...=|..||..|..+.+ ...|-.|..+|...
T Consensus 16 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 56777766664332 23456778999987666 24799999988643
No 88
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=75.30 E-value=1.3 Score=22.27 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=15.0
Q ss_pred eeccCCcccCHHhhhhhc
Q psy2501 94 FFERDSRPYCEPDYHNLF 111 (130)
Q Consensus 94 ~~~~~~~~~C~~~~~~~~ 111 (130)
|...+.++||.+||.++-
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 458899999999998664
No 89
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.42 E-value=4.3 Score=21.95 Aligned_cols=45 Identities=22% Similarity=0.458 Sum_probs=28.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc--CCCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF--SPRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~--~~~C~~C~~~I~~ 124 (130)
+.|..|...+.+......=+..||..|..+.+ ...|-.|.++|..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 56666666654422222456778888876544 4689999988764
No 90
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=72.79 E-value=1.3 Score=29.81 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=23.9
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhh
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHN 109 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~ 109 (130)
..|..|+-..........+|+.+|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 578888887766666678899999999864
No 91
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=72.53 E-value=4.7 Score=22.06 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCcccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCccccccC
Q psy2501 78 EHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPILDV 125 (130)
Q Consensus 78 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I~~~ 125 (130)
+-|.|..|...+.+. ....-|..||..|..+.+. ..|-.|.+++...
T Consensus 7 ~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 346777777766543 3345678889888766553 3688998887643
No 92
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=70.99 E-value=3.3 Score=21.89 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=22.5
Q ss_pred ccCCCCcccCCCCeeccCCcccC-HHhhhh
Q psy2501 81 ICTHCNQELGTRNFFERDSRPYC-EPDYHN 109 (130)
Q Consensus 81 ~C~~C~~~l~~~~~~~~~~~~~C-~~~~~~ 109 (130)
.|..|+..++..+-...+|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 56778888876677889999998 777653
No 93
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=69.56 E-value=6 Score=22.14 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=28.8
Q ss_pred cccCCCCcccCCC--Cee-ccCCcccCHHhhhhhc---CCCCccCccccccCc
Q psy2501 80 FICTHCNQELGTR--NFF-ERDSRPYCEPDYHNLF---SPRCSYCNGPILDVS 126 (130)
Q Consensus 80 f~C~~C~~~l~~~--~~~-~~~~~~~C~~~~~~~~---~~~C~~C~~~I~~~~ 126 (130)
+.|..|-.++... .+. ..=|..+|..|+.+.. ...|-.|.+++...-
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4566666655321 221 1246678988887665 358999998886543
No 94
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=68.89 E-value=4.1 Score=23.53 Aligned_cols=45 Identities=18% Similarity=0.441 Sum_probs=23.5
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC--CCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS--PRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~--~~C~~C~~~I~~ 124 (130)
+.|..|...+.+......=|..||..|..+.+. ..|-.|..++..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 344455444433211113455677777654442 468888777653
No 95
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.26 E-value=5.5 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=23.4
Q ss_pred CcccccCCcccCCCCcc-cCCCCee--ccCCcccCHHhhhhh
Q psy2501 72 GKTWHPEHFICTHCNQE-LGTRNFF--ERDSRPYCEPDYHNL 110 (130)
Q Consensus 72 ~~~~H~~Cf~C~~C~~~-l~~~~~~--~~~~~~~C~~~~~~~ 110 (130)
...+|+ ..|..|+.. +.+.+|. .=.+..+|..||.+.
T Consensus 6 ~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 345566 677777763 6655544 223567899998764
No 96
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.81 E-value=8.1 Score=22.54 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=12.8
Q ss_pred cccCHHhhhhhc---CCCCccCccc
Q psy2501 100 RPYCEPDYHNLF---SPRCSYCNGP 121 (130)
Q Consensus 100 ~~~C~~~~~~~~---~~~C~~C~~~ 121 (130)
.+.|+.||.... ...|..|.-+
T Consensus 43 FPvCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 43 FPACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp CCCCHHHHHHHHHTSCSSCTTTCCC
T ss_pred ChhhHHHHHHHHhccCccccccCCc
Confidence 345888876322 2367777654
No 97
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=64.32 E-value=5.1 Score=23.93 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=20.5
Q ss_pred cCCCCcccCCCCeeccCCcccCHHhhhh---hcCCCCccCcccc
Q psy2501 82 CTHCNQELGTRNFFERDSRPYCEPDYHN---LFSPRCSYCNGPI 122 (130)
Q Consensus 82 C~~C~~~l~~~~~~~~~~~~~C~~~~~~---~~~~~C~~C~~~I 122 (130)
|..|+.++.--.....=+..+|-+|+.. .-...|..|..+|
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 4445555432222233345667777643 2234677777765
No 98
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.25 E-value=7.8 Score=21.25 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=26.4
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc--------CCCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF--------SPRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~--------~~~C~~C~~~I~~ 124 (130)
+.|..|...+... ....=|..||..|..+.+ ...|-.|...|..
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5566666655432 222345667877765432 4579899888764
No 99
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.53 E-value=9.7 Score=20.75 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=17.5
Q ss_pred cCHHhhhhhcCCCCccCccccccCce
Q psy2501 102 YCEPDYHNLFSPRCSYCNGPILDVSI 127 (130)
Q Consensus 102 ~C~~~~~~~~~~~C~~C~~~I~~~~~ 127 (130)
+|..|..+. ..|-.|..+|...+-
T Consensus 48 ~C~~C~~~~--~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 48 TCKQCAEAV--DKCPMCYTVITFKQK 71 (75)
T ss_dssp BCHHHHHHC--SBCTTTCCBCCCCCB
T ss_pred HHHHHhhCC--CCCccCCceecCcEE
Confidence 688886543 689999999876543
No 100
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=62.07 E-value=8.1 Score=20.99 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=23.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc---------CCCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF---------SPRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~---------~~~C~~C~~~I~~ 124 (130)
+.|..|...+... ....=|..||..|..+.+ ...|-.|..++..
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4455555444322 112335566777765433 2468888887753
No 101
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=61.99 E-value=10 Score=22.07 Aligned_cols=48 Identities=6% Similarity=-0.024 Sum_probs=33.4
Q ss_pred cCCcccCCCCcccCCCCeeccCC-cccCHHhhhhhcC--CCCccCccccccC
Q psy2501 77 PEHFICTHCNQELGTRNFFERDS-RPYCEPDYHNLFS--PRCSYCNGPILDV 125 (130)
Q Consensus 77 ~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~~~~~~~~--~~C~~C~~~I~~~ 125 (130)
++-|.|..|...+.+. .....| ..||+.|-.+.+. ..|-.|++++...
T Consensus 20 p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 5568888888877654 334455 8999888765553 4788888887643
No 102
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.73 E-value=12 Score=20.45 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=28.0
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc--------CCCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF--------SPRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~--------~~~C~~C~~~I~~~ 125 (130)
+.|..|...+... ....=+..||..|..+.+ ...|-.|..+|...
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 5666666665432 223356678888875432 35799998887644
No 103
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=61.29 E-value=12 Score=21.97 Aligned_cols=49 Identities=6% Similarity=0.002 Sum_probs=34.8
Q ss_pred ccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcC--CCCccCccccccC
Q psy2501 76 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFS--PRCSYCNGPILDV 125 (130)
Q Consensus 76 H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~--~~C~~C~~~I~~~ 125 (130)
-++-|.|..|...+.+. .....|..||..|-.+.+. ..|-.|++++...
T Consensus 26 ~p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 35678899888887654 3344788999988655543 5788888887643
No 104
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=60.43 E-value=7.6 Score=23.02 Aligned_cols=43 Identities=16% Similarity=0.410 Sum_probs=26.8
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPIL 123 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I~ 123 (130)
+.|..|...+... ....=|..||..|..+.+. ..|-.|...|.
T Consensus 16 ~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 5566666555432 2234466788888766653 37888988764
No 105
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.10 E-value=7.3 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=13.5
Q ss_pred cccCHHhhhhhcC-----CCCccCcccccc
Q psy2501 100 RPYCEPDYHNLFS-----PRCSYCNGPILD 124 (130)
Q Consensus 100 ~~~C~~~~~~~~~-----~~C~~C~~~I~~ 124 (130)
..||..|..+.+. ..|-.|..+|..
T Consensus 41 H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 41 HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3455555543332 257777776654
No 106
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.26 E-value=8.5 Score=21.19 Aligned_cols=44 Identities=27% Similarity=0.615 Sum_probs=25.1
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc--CCCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF--SPRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~--~~~C~~C~~~I~~ 124 (130)
+.|..|...+... ....=|..||..|..+.+ ...|-.|..++.+
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 16 FRCFICRQAFQNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 4555555555332 223345667777765443 3468888887753
No 107
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=57.94 E-value=10 Score=20.65 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=16.2
Q ss_pred cCHHhhhhhcCCCCccCccccccCc
Q psy2501 102 YCEPDYHNLFSPRCSYCNGPILDVS 126 (130)
Q Consensus 102 ~C~~~~~~~~~~~C~~C~~~I~~~~ 126 (130)
+|..|..+. ..|-.|..+|...+
T Consensus 47 ~C~~C~~~~--~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 47 TCKQCAEAV--DKCPMCYTVITFKQ 69 (74)
T ss_dssp CCHHHHTTC--SBCTTTCCBCSEEE
T ss_pred HHHHhhhcC--ccCCCcCcCccCcE
Confidence 677776544 67888888876543
No 108
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=57.93 E-value=13 Score=21.75 Aligned_cols=45 Identities=11% Similarity=0.350 Sum_probs=26.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC--CCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS--PRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~--~~C~~C~~~I~~ 124 (130)
+.|..|...+.+......=|..||..|..+.+. ..|-.|...|..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 456666655543211124567778877755543 478888877653
No 109
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=56.95 E-value=4.1 Score=21.53 Aligned_cols=12 Identities=33% Similarity=0.838 Sum_probs=9.6
Q ss_pred CCCCccCccccc
Q psy2501 112 SPRCSYCNGPIL 123 (130)
Q Consensus 112 ~~~C~~C~~~I~ 123 (130)
..+|++|++.|.
T Consensus 3 PVRCFTCGkvi~ 14 (55)
T 1ef4_A 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CeecCCCCCChh
Confidence 458999999874
No 110
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.52 E-value=13 Score=19.34 Aligned_cols=48 Identities=19% Similarity=0.456 Sum_probs=27.9
Q ss_pred cccCCCCc-ccCCCC---eeccCCcccCHHhhhhhc---CCCCccCccccccCce
Q psy2501 80 FICTHCNQ-ELGTRN---FFERDSRPYCEPDYHNLF---SPRCSYCNGPILDVSI 127 (130)
Q Consensus 80 f~C~~C~~-~l~~~~---~~~~~~~~~C~~~~~~~~---~~~C~~C~~~I~~~~~ 127 (130)
+.|..|.. .+.+.. ....=|..||..|..+.+ ...|-.|.++|...-+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 34555555 332221 123446778888876553 2479999998864433
No 111
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=54.74 E-value=12 Score=21.02 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=31.5
Q ss_pred cCCcccCCCCcccCCCCeeccCCcccCHHhhhhhc--CCCCccCcccccc
Q psy2501 77 PEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF--SPRCSYCNGPILD 124 (130)
Q Consensus 77 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~--~~~C~~C~~~I~~ 124 (130)
++-|.|..|...+.+. .....|..||..|-.+.+ ...|-.|++++..
T Consensus 12 p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4557888888777653 334478888887765443 3578888887654
No 112
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.99 E-value=10 Score=20.06 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=26.1
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC--CCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS--PRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~--~~C~~C~~~I~~ 124 (130)
+.|..|...+.. ....=+..||..|..+.+. ..|-.|..+|..
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 455556555543 3334456678888765443 578888877754
No 113
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.90 E-value=7.6 Score=21.58 Aligned_cols=45 Identities=16% Similarity=0.403 Sum_probs=26.1
Q ss_pred cccCCCCcccCCCC---eeccCCcccCHHhhhhhcC-----CCCccCcccccc
Q psy2501 80 FICTHCNQELGTRN---FFERDSRPYCEPDYHNLFS-----PRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~---~~~~~~~~~C~~~~~~~~~-----~~C~~C~~~I~~ 124 (130)
+.|..|...+.... ....=|..||..|..+.+. ..|-.|.+++..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45666665554321 1223466778888765432 478888887653
No 114
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=52.09 E-value=9.8 Score=24.17 Aligned_cols=44 Identities=14% Similarity=0.375 Sum_probs=28.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPIL 123 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I~ 123 (130)
+.|..|...+........=|..||..|..+.+. ..|-.|..+|.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 567777766654322224577888888765543 46889988874
No 115
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.52 E-value=6.6 Score=21.08 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=26.0
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC--CCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS--PRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~--~~C~~C~~~I~~~ 125 (130)
+.|..|...+... ....=+..||..|..+.+. ..|-.|...|...
T Consensus 16 ~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 16 PECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp CBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4555555554332 2223456678888765433 4788888887543
No 116
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=50.71 E-value=13 Score=19.54 Aligned_cols=25 Identities=20% Similarity=0.592 Sum_probs=12.2
Q ss_pred CcccCHHhhhhhc--CCCCccCccccc
Q psy2501 99 SRPYCEPDYHNLF--SPRCSYCNGPIL 123 (130)
Q Consensus 99 ~~~~C~~~~~~~~--~~~C~~C~~~I~ 123 (130)
|..||..|..+.+ ...|-.|..+|.
T Consensus 25 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 25 LHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp TEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3445555543221 245666666554
No 117
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=50.39 E-value=12 Score=20.25 Aligned_cols=42 Identities=14% Similarity=0.414 Sum_probs=24.8
Q ss_pred cccCCCCcccCCCCeecc-CCcccCHHhhhhhcC----CCCccCcccc
Q psy2501 80 FICTHCNQELGTRNFFER-DSRPYCEPDYHNLFS----PRCSYCNGPI 122 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~-~~~~~C~~~~~~~~~----~~C~~C~~~I 122 (130)
+.|..|...+.+. .... =|..||..|..+.+. ..|-.|..++
T Consensus 16 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 16 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 4566665555432 2233 267778777655542 4788888764
No 118
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=50.26 E-value=10 Score=18.85 Aligned_cols=26 Identities=23% Similarity=0.581 Sum_probs=14.8
Q ss_pred CcccCHHhhhhhc--CCCCccCcccccc
Q psy2501 99 SRPYCEPDYHNLF--SPRCSYCNGPILD 124 (130)
Q Consensus 99 ~~~~C~~~~~~~~--~~~C~~C~~~I~~ 124 (130)
+..||..|..+.+ ...|-.|..+|.|
T Consensus 28 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 28 GHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp SCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4455555554332 2578788777654
No 119
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=49.55 E-value=9.7 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.339 Sum_probs=20.0
Q ss_pred cCCcccCHHhhhhhc--CCCCccCccccccCce
Q psy2501 97 RDSRPYCEPDYHNLF--SPRCSYCNGPILDVSI 127 (130)
Q Consensus 97 ~~~~~~C~~~~~~~~--~~~C~~C~~~I~~~~~ 127 (130)
.=|..||..|..+.+ ...|-.|..+|...-+
T Consensus 27 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 27 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 345667777765433 3578888888765444
No 120
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=47.80 E-value=13 Score=21.93 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=23.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc---CCCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~---~~~C~~C~~~I~~ 124 (130)
+.|..|...+.+. ....=|..||..|..+.+ ...|-.|..+|..
T Consensus 24 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4555555555332 223445666776665433 3467777776643
No 121
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=47.73 E-value=12 Score=21.01 Aligned_cols=43 Identities=14% Similarity=0.427 Sum_probs=28.6
Q ss_pred CcccCCCCcccCCCCeecc-CCcccCHHhhhhhc---C-CCCccCcccc
Q psy2501 79 HFICTHCNQELGTRNFFER-DSRPYCEPDYHNLF---S-PRCSYCNGPI 122 (130)
Q Consensus 79 Cf~C~~C~~~l~~~~~~~~-~~~~~C~~~~~~~~---~-~~C~~C~~~I 122 (130)
-+.|..|...+.+. .... =|..||..|..+.+ + ..|-.|..++
T Consensus 13 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 36777777766532 2333 37788988876554 2 4899998886
No 122
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=47.38 E-value=11 Score=21.79 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=13.4
Q ss_pred CcccCHHhhhhhcC---CCCccCccccc
Q psy2501 99 SRPYCEPDYHNLFS---PRCSYCNGPIL 123 (130)
Q Consensus 99 ~~~~C~~~~~~~~~---~~C~~C~~~I~ 123 (130)
|..||..|..+.+. ..|-.|..++.
T Consensus 42 gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 42 SKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp CCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 34456666543321 35777766654
No 123
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=46.80 E-value=6.7 Score=26.97 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=8.4
Q ss_pred CCCccCccccccC
Q psy2501 113 PRCSYCNGPILDV 125 (130)
Q Consensus 113 ~~C~~C~~~I~~~ 125 (130)
..|-.|+.+..+.
T Consensus 218 ~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 218 PRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCCBCCSC
T ss_pred CCCCCCCCCCCCC
Confidence 4777777766543
No 124
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=46.39 E-value=18 Score=23.03 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=28.7
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I~~ 124 (130)
|.|..|...+... ....-|..||..|..+.+. ..|-.|..+|..
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 6677777766543 3345677788888765542 378888777654
No 125
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=45.31 E-value=12 Score=22.42 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=24.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCcccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPILD 124 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I~~ 124 (130)
+.|..|...+... ....=|..||..|..+.+. ..|-.|..+|..
T Consensus 53 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4455555544322 1223456677777654442 378888887754
No 126
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.59 E-value=18 Score=18.37 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=12.2
Q ss_pred cccCHHhhhhhcCCCCccCccccc
Q psy2501 100 RPYCEPDYHNLFSPRCSYCNGPIL 123 (130)
Q Consensus 100 ~~~C~~~~~~~~~~~C~~C~~~I~ 123 (130)
..||..|..+ ....|-.|...+.
T Consensus 26 H~fC~~Ci~~-~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 26 HTLCSGCLEA-SGMQCPICQAPWP 48 (56)
T ss_dssp CCSBTTTCSS-SSSSCSSCCSSSS
T ss_pred CcccHHHHcc-CCCCCCcCCcEee
Confidence 3445555332 2356777776654
No 127
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.02 E-value=19 Score=19.43 Aligned_cols=13 Identities=15% Similarity=0.542 Sum_probs=7.8
Q ss_pred CCCccCccccccC
Q psy2501 113 PRCSYCNGPILDV 125 (130)
Q Consensus 113 ~~C~~C~~~I~~~ 125 (130)
..|-.|...|...
T Consensus 53 ~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 53 DSCPVCRKSLTGQ 65 (78)
T ss_dssp CSCTTTCCCCCCS
T ss_pred CcCcCcCCccCCc
Confidence 3567776666543
No 128
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=42.11 E-value=26 Score=21.45 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=14.2
Q ss_pred CcccCHHhhhhhcC--CCCccCccccc
Q psy2501 99 SRPYCEPDYHNLFS--PRCSYCNGPIL 123 (130)
Q Consensus 99 ~~~~C~~~~~~~~~--~~C~~C~~~I~ 123 (130)
|..||..|..+.+. ..|-.|..+|.
T Consensus 72 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 72 AHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 44566666543332 35777777664
No 129
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=42.01 E-value=15 Score=23.20 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=26.9
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCccccccC
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPILDV 125 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I~~~ 125 (130)
+.|..|...+... ....=|..||..|..+.+. ..|-.|..+|...
T Consensus 79 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4566666555432 2234466778888655442 3688888887644
No 130
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=40.79 E-value=23 Score=19.55 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=13.2
Q ss_pred cCHHhhhhhcCCCCccCccccccC
Q psy2501 102 YCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 102 ~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
+|..|..+. ..|-.|..+|...
T Consensus 41 ~C~~C~~~~--~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 41 CCESCAAQL--QSCPVCRSRVEHV 62 (79)
T ss_dssp BCHHHHTTC--SBCTTTCCBCCEE
T ss_pred HHHHHHHhc--CcCCCCCchhhCe
Confidence 566665443 3677777776553
No 131
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.12 E-value=9.6 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=17.7
Q ss_pred CCcccCHHhhhhhc--CCCCccCcccccc
Q psy2501 98 DSRPYCEPDYHNLF--SPRCSYCNGPILD 124 (130)
Q Consensus 98 ~~~~~C~~~~~~~~--~~~C~~C~~~I~~ 124 (130)
=|..||..|..+.+ ...|-.|..+|..
T Consensus 40 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 40 CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35667777765443 3578888887653
No 132
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=39.91 E-value=8.5 Score=22.04 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=25.5
Q ss_pred Cccccccccccc-cceeeecCcccccCCcccCC
Q psy2501 53 KGCCSSCDKPIV-GQVITALGKTWHPEHFICTH 84 (130)
Q Consensus 53 ~~~C~~C~~~i~-~~~~~~~~~~~H~~Cf~C~~ 84 (130)
...|.-|.+.+. ..++..-....|.-||-|+.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 357999999997 46677777788999999874
No 133
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=39.76 E-value=6.6 Score=23.96 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=12.8
Q ss_pred CCCCCCccccccccccc
Q psy2501 48 VTTTQKGCCSSCDKPIV 64 (130)
Q Consensus 48 ~~~~~~~~C~~C~~~i~ 64 (130)
|..++...|..|+..|.
T Consensus 10 YAkSgRA~Ck~C~~kI~ 26 (117)
T 1uw0_A 10 YAKRGTAGCKKCKEKIV 26 (117)
T ss_dssp ECCSSCEECTTSSCEEC
T ss_pred EeCCCCccchhhCcccC
Confidence 34456678999999994
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=39.20 E-value=20 Score=24.37 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=32.1
Q ss_pred ccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhc---CCCCccCcccccc
Q psy2501 76 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILD 124 (130)
Q Consensus 76 H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~---~~~C~~C~~~I~~ 124 (130)
-+.-|.|..|...+.+. .....|..||..|-.+.+ +..|-.|++++..
T Consensus 205 ~~~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34567888888777543 334468888888865443 2348888888753
No 135
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=39.08 E-value=8.7 Score=19.05 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=8.0
Q ss_pred CCccCcccccc
Q psy2501 114 RCSYCNGPILD 124 (130)
Q Consensus 114 ~C~~C~~~I~~ 124 (130)
.|..|++||.=
T Consensus 19 vC~~CgkPi~l 29 (44)
T 2lo3_A 19 VCEKCGKPLAL 29 (44)
T ss_dssp ECTTTCCEEET
T ss_pred hhcccCCcchH
Confidence 57788888753
No 136
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=39.08 E-value=7.7 Score=24.28 Aligned_cols=42 Identities=21% Similarity=0.543 Sum_probs=26.6
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCcccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPI 122 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I 122 (130)
|.|..|...+... ....=|..||..|..+.+. ..|-.|..+|
T Consensus 32 ~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 5677777666433 2244567788888765543 3688887765
No 137
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=38.24 E-value=11 Score=20.59 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=9.8
Q ss_pred CCCCccCcccccc
Q psy2501 112 SPRCSYCNGPILD 124 (130)
Q Consensus 112 ~~~C~~C~~~I~~ 124 (130)
..+|++|++.|..
T Consensus 4 PVRCFTCGkvi~~ 16 (66)
T 4ayb_N 4 PIRCFTCGSLIAD 16 (66)
T ss_dssp CSBCTTTCCBCHH
T ss_pred CcccCCCcHhHHH
Confidence 4589999998743
No 138
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=37.78 E-value=22 Score=21.14 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=20.0
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhcC---CCCccCccccc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS---PRCSYCNGPIL 123 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~---~~C~~C~~~I~ 123 (130)
+.|..|...+... ....=|..||..|..+.+. ..|-.|..+|.
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 4455555444322 2223345566666543321 25666665554
No 139
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=36.36 E-value=11 Score=25.00 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=18.4
Q ss_pred CcccCCCCcccCCCCeeccCCcccCHHhhhhhc
Q psy2501 79 HFICTHCNQELGTRNFFERDSRPYCEPDYHNLF 111 (130)
Q Consensus 79 Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~ 111 (130)
-..|..|+-..... |+.+|..|+.+.+
T Consensus 163 ~~~C~~CGE~~~~~------g~~~C~~C~~~~~ 189 (191)
T 3d00_A 163 IVLCPQCREAYPAQ------DGELCLSCQGGSP 189 (191)
T ss_dssp EEECTTTCCEEEGG------GCSSCHHHHTTCC
T ss_pred CEECCcCCCChhhC------CCcCCccccCCCC
Confidence 35677777655432 7889999986543
No 140
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=34.96 E-value=29 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=21.4
Q ss_pred ccccCCcccCCCCc-ccCCCCee--ccCCcccCHHhhhhh
Q psy2501 74 TWHPEHFICTHCNQ-ELGTRNFF--ERDSRPYCEPDYHNL 110 (130)
Q Consensus 74 ~~H~~Cf~C~~C~~-~l~~~~~~--~~~~~~~C~~~~~~~ 110 (130)
.+|.. ..|..|+. ++.+.+|. .=.+..+|..||...
T Consensus 27 ~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred cccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 35654 66777775 45555444 223466788887754
No 141
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=33.57 E-value=30 Score=17.76 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=13.4
Q ss_pred ccCCCCcccCCCCeec-cCCcccCHHhh
Q psy2501 81 ICTHCNQELGTRNFFE-RDSRPYCEPDY 107 (130)
Q Consensus 81 ~C~~C~~~l~~~~~~~-~~~~~~C~~~~ 107 (130)
+|+.|++.-....... ..+...|..|-
T Consensus 13 ~CSFCGk~~~ev~~LIaGpgv~IC~eCi 40 (51)
T 2ds5_A 13 YCSFCGKSQHEVRKLIAGPSVYICDECV 40 (51)
T ss_dssp BCTTTCCBTTTSSCEEECSSCEEEHHHH
T ss_pred EecCCCCCHHHhcccCCCCCCEehHHHH
Confidence 5677776554333222 12334476664
No 142
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=33.46 E-value=46 Score=16.27 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=12.0
Q ss_pred CcccCHHhhhhhc--CCCCccCcccc
Q psy2501 99 SRPYCEPDYHNLF--SPRCSYCNGPI 122 (130)
Q Consensus 99 ~~~~C~~~~~~~~--~~~C~~C~~~I 122 (130)
+..||..|..+.+ ...|-.|..+|
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 3344555543322 24677776655
No 143
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=32.89 E-value=28 Score=20.62 Aligned_cols=72 Identities=14% Similarity=0.275 Sum_probs=44.3
Q ss_pred ccccccccccccceeeecCcccccCCcccCCCCcccCCC-----C-eeccCCcccCHHhhhhhc--CCCCccCccccccC
Q psy2501 54 GCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTR-----N-FFERDSRPYCEPDYHNLF--SPRCSYCNGPILDV 125 (130)
Q Consensus 54 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~-----~-~~~~~~~~~C~~~~~~~~--~~~C~~C~~~I~~~ 125 (130)
..|..|.+.+....+.. .....+-..|..|...+... . ....=|..||..|..+.+ ...|-.|...|...
T Consensus 49 ~~CP~Cr~~~~~~~l~~--l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHP--IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SBCTTTCCBCTTTCEEE--CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCccccccc--cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 37999999885322211 11223456788887766421 1 223457889998876433 35899999988754
Q ss_pred ce
Q psy2501 126 SI 127 (130)
Q Consensus 126 ~~ 127 (130)
-+
T Consensus 127 ~~ 128 (133)
T 4ap4_A 127 RY 128 (133)
T ss_dssp GE
T ss_pred cc
Confidence 33
No 144
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=32.38 E-value=70 Score=19.27 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=7.7
Q ss_pred CCCccCcccccc
Q psy2501 113 PRCSYCNGPILD 124 (130)
Q Consensus 113 ~~C~~C~~~I~~ 124 (130)
..|..|+-.+++
T Consensus 60 ~~C~~C~t~~tp 71 (115)
T 4hc9_A 60 TSCANCQTTTTT 71 (115)
T ss_dssp CCCTTTCCSCCS
T ss_pred ccCCCcCCCCcc
Confidence 468888766543
No 145
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.91 E-value=79 Score=18.48 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=13.3
Q ss_pred ccccccccccc-cceee--ecCcccccCCcc
Q psy2501 54 GCCSSCDKPIV-GQVIT--ALGKTWHPEHFI 81 (130)
Q Consensus 54 ~~C~~C~~~i~-~~~~~--~~~~~~H~~Cf~ 81 (130)
..|..|+..-. ...+. .=++.||..|..
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~ 38 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD 38 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTT
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhC
Confidence 45666655432 11122 224566766654
No 146
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=31.64 E-value=29 Score=18.96 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=12.2
Q ss_pred ccCCCCcccCCCCeec-cCCcccCHHhh
Q psy2501 81 ICTHCNQELGTRNFFE-RDSRPYCEPDY 107 (130)
Q Consensus 81 ~C~~C~~~l~~~~~~~-~~~~~~C~~~~ 107 (130)
+|+.|++.-......+ ..+...|..|-
T Consensus 20 ~CSFCGK~e~eV~~LIaGpgvyICdeCI 47 (67)
T 1ovx_A 20 YCSFCGKSQHEVRKLIAGPSVYICDECV 47 (67)
T ss_dssp CCTTTCCCTTTSSSEEECSSCEEEHHHH
T ss_pred EecCCCCCHHHHcccCCCCCCChhHHHH
Confidence 4666666543332221 12334466664
No 147
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=31.48 E-value=49 Score=18.51 Aligned_cols=27 Identities=15% Similarity=0.232 Sum_probs=16.3
Q ss_pred CcccCHHhhhhhc--CCCCccCccccccC
Q psy2501 99 SRPYCEPDYHNLF--SPRCSYCNGPILDV 125 (130)
Q Consensus 99 ~~~~C~~~~~~~~--~~~C~~C~~~I~~~ 125 (130)
+..||..|..+.+ ...|-.|...|...
T Consensus 62 ~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 62 HHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp TEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 4556666654332 24788888777654
No 148
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=31.05 E-value=9.5 Score=22.47 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.9
Q ss_pred CCccCccccc
Q psy2501 114 RCSYCNGPIL 123 (130)
Q Consensus 114 ~C~~C~~~I~ 123 (130)
.|-.|++||.
T Consensus 77 vCn~CGkPI~ 86 (96)
T 3mhs_E 77 VCEKCGKPLA 86 (96)
T ss_dssp EETTTCCEEC
T ss_pred hhhccCCcee
Confidence 5888888876
No 149
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=30.70 E-value=14 Score=19.45 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=16.6
Q ss_pred CcccCHHhhhhhc--CCCCccCccccccC
Q psy2501 99 SRPYCEPDYHNLF--SPRCSYCNGPILDV 125 (130)
Q Consensus 99 ~~~~C~~~~~~~~--~~~C~~C~~~I~~~ 125 (130)
|..||..|..+.+ ...|-.|..++...
T Consensus 36 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 36 GHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4556777764332 35788888777644
No 150
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=29.56 E-value=50 Score=17.12 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=15.5
Q ss_pred CcccCHHhhhhhc--CCCCccCccccccC
Q psy2501 99 SRPYCEPDYHNLF--SPRCSYCNGPILDV 125 (130)
Q Consensus 99 ~~~~C~~~~~~~~--~~~C~~C~~~I~~~ 125 (130)
+..||..|..+.+ ...|-.|..+|...
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3455666654322 35688888777543
No 151
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=29.36 E-value=39 Score=22.14 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=33.2
Q ss_pred ccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhc---CCCCccCcccccc
Q psy2501 76 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF---SPRCSYCNGPILD 124 (130)
Q Consensus 76 H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~---~~~C~~C~~~I~~ 124 (130)
-+.-|.|..|...+.+. .....|..||..|-.+.+ +..|-.|++++..
T Consensus 103 ip~~f~CPI~~elm~DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 35668888888877653 445678899988865443 3358888887754
No 152
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.69 E-value=19 Score=19.67 Aligned_cols=9 Identities=33% Similarity=1.150 Sum_probs=4.5
Q ss_pred ccccccccc
Q psy2501 55 CCSSCDKPI 63 (130)
Q Consensus 55 ~C~~C~~~i 63 (130)
.|..|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2hf1_A 10 VCPLCKGPL 18 (68)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCCcC
Confidence 455555444
No 153
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.38 E-value=20 Score=19.60 Aligned_cols=9 Identities=11% Similarity=0.435 Sum_probs=4.8
Q ss_pred ccccccccc
Q psy2501 55 CCSSCDKPI 63 (130)
Q Consensus 55 ~C~~C~~~i 63 (130)
.|..|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2jr6_A 10 VCPVTKGRL 18 (68)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCcC
Confidence 455555544
No 154
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.18 E-value=18 Score=19.92 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=5.8
Q ss_pred cccccccccc
Q psy2501 54 GCCSSCDKPI 63 (130)
Q Consensus 54 ~~C~~C~~~i 63 (130)
-.|..|+.++
T Consensus 9 L~CP~ck~~L 18 (70)
T 2js4_A 9 LVCPVCKGRL 18 (70)
T ss_dssp CBCTTTCCBE
T ss_pred eECCCCCCcC
Confidence 3566666655
No 155
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.60 E-value=35 Score=19.40 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCcccCCCCcccCCCCeec-cCCcccCHHhhhhhcC--------CCCcc--Cccc
Q psy2501 78 EHFICTHCNQELGTRNFFE-RDSRPYCEPDYHNLFS--------PRCSY--CNGP 121 (130)
Q Consensus 78 ~Cf~C~~C~~~l~~~~~~~-~~~~~~C~~~~~~~~~--------~~C~~--C~~~ 121 (130)
.-|.|..|...+.+. ... ..|..||+.|-.+.+. ..|-. |.+.
T Consensus 6 ~~~~CPI~~~~~~dP-V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP-VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE-EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC-EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 347788887777653 334 4788898887654432 36776 6543
No 156
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=27.50 E-value=42 Score=17.51 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=24.6
Q ss_pred ccccccccccccceeeecC-----cccccCCcccCCCCcccCCCCeeccCCcccCHHhhh
Q psy2501 54 GCCSSCDKPIVGQVITALG-----KTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYH 108 (130)
Q Consensus 54 ~~C~~C~~~i~~~~~~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~ 108 (130)
..| .|+++-.+..|...+ ..||..|.. |.. ...++-||..|-.
T Consensus 10 ~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg-------l~~----~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD-------LTT----KPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGT-------CSS----CCSSCCCCHHHHC
T ss_pred cEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC-------ccc----CCCCCEECcCccC
Confidence 456 687765555454433 567987754 211 1225678888743
No 157
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.16 E-value=32 Score=13.29 Aligned_cols=11 Identities=18% Similarity=0.736 Sum_probs=7.2
Q ss_pred cccCCCCcccC
Q psy2501 80 FICTHCNQELG 90 (130)
Q Consensus 80 f~C~~C~~~l~ 90 (130)
|.|..|++.+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 56777777654
No 158
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.92 E-value=54 Score=17.24 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=14.9
Q ss_pred CcccCHHhhhhhc--CCCCccCccccc
Q psy2501 99 SRPYCEPDYHNLF--SPRCSYCNGPIL 123 (130)
Q Consensus 99 ~~~~C~~~~~~~~--~~~C~~C~~~I~ 123 (130)
+..||..|..+.+ ...|-.|..+|.
T Consensus 37 ~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 37 KHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp TEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 4556666654322 347888877764
No 159
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.48 E-value=19 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=22.9
Q ss_pred CCCcccccccccccccee-eecCcccccCCcccCCCCcccC
Q psy2501 51 TQKGCCSSCDKPIVGQVI-TALGKTWHPEHFICTHCNQELG 90 (130)
Q Consensus 51 ~~~~~C~~C~~~i~~~~~-~~~~~~~H~~Cf~C~~C~~~l~ 90 (130)
.....|++|+..|....+ .+.. ...=..|..|++-|-
T Consensus 196 v~~~~C~GC~~~lppq~~~~i~~---~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 196 IKKQACGGCFIRLNDKIYTEVLT---SGDMITCPYCGRILY 233 (256)
T ss_dssp CBTTBCTTTCCBCCHHHHHHHHH---SSSCEECTTTCCEEE
T ss_pred eeCCccCCCCeeeCHHHHHHHHC---CCCEEECCCCCeeEE
Confidence 345689999998864322 1110 223368899998874
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.04 E-value=22 Score=19.40 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=11.1
Q ss_pred eccCCcccCHHhhhhh
Q psy2501 95 FERDSRPYCEPDYHNL 110 (130)
Q Consensus 95 ~~~~~~~~C~~~~~~~ 110 (130)
..=++.+||..||...
T Consensus 23 ~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 23 AGCDGDLYCARCFREG 38 (67)
T ss_dssp TTTTSEEECSSHHHHH
T ss_pred cCCCCceehHHHHHHH
Confidence 3445678998888654
No 161
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.86 E-value=35 Score=18.57 Aligned_cols=9 Identities=22% Similarity=0.707 Sum_probs=4.0
Q ss_pred ccccccccc
Q psy2501 55 CCSSCDKPI 63 (130)
Q Consensus 55 ~C~~C~~~i 63 (130)
.|..|+.++
T Consensus 12 ~CP~ck~~L 20 (67)
T 2jny_A 12 ACPKDKGPL 20 (67)
T ss_dssp BCTTTCCBC
T ss_pred CCCCCCCcC
Confidence 344444443
No 162
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.64 E-value=34 Score=13.41 Aligned_cols=11 Identities=27% Similarity=1.074 Sum_probs=7.7
Q ss_pred cccCCCCcccC
Q psy2501 80 FICTHCNQELG 90 (130)
Q Consensus 80 f~C~~C~~~l~ 90 (130)
|.|..|+..+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 56777777664
No 163
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.61 E-value=37 Score=17.31 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=18.8
Q ss_pred cccCCCCcccCCCCeeccCCcccCHHhhhhhc
Q psy2501 80 FICTHCNQELGTRNFFERDSRPYCEPDYHNLF 111 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~ 111 (130)
+.|..|...+... ....=|..||..|..+.+
T Consensus 21 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQKP-VTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSSC-EECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCCe-EEeCCCCcchHHHHHHHH
Confidence 5666776666432 223456778888876554
No 164
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=25.53 E-value=16 Score=17.11 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=13.6
Q ss_pred cccCHHhhhhhcC--CCCccCccc
Q psy2501 100 RPYCEPDYHNLFS--PRCSYCNGP 121 (130)
Q Consensus 100 ~~~C~~~~~~~~~--~~C~~C~~~ 121 (130)
.--|..|+.+..+ .+|.+|+.+
T Consensus 7 ~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 7 SWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp CEECTTTCCEECSSCSBCTTTCCB
T ss_pred ceECCeeEeECccccCEEcccCCc
Confidence 3346677665544 378888765
No 165
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.83 E-value=45 Score=17.71 Aligned_cols=25 Identities=12% Similarity=0.444 Sum_probs=17.3
Q ss_pred Ccc-cCHHhhhhhcCCCCccCccccccC
Q psy2501 99 SRP-YCEPDYHNLFSPRCSYCNGPILDV 125 (130)
Q Consensus 99 ~~~-~C~~~~~~~~~~~C~~C~~~I~~~ 125 (130)
+.. +|..|..+. ..|-.|..+|...
T Consensus 34 gH~~~C~~C~~~~--~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 34 RHTCLCDGCVKYF--QQCPMCRQFVQES 59 (68)
T ss_dssp TBCCSCTTHHHHC--SSCTTTCCCCCCE
T ss_pred CChhhhHHHHhcC--CCCCCCCcchhce
Confidence 344 677776643 6888898888653
No 166
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.33 E-value=40 Score=13.34 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=8.2
Q ss_pred cccCCCCcccCC
Q psy2501 80 FICTHCNQELGT 91 (130)
Q Consensus 80 f~C~~C~~~l~~ 91 (130)
|.|..|+..+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 577778776643
No 167
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=23.92 E-value=43 Score=17.49 Aligned_cols=43 Identities=7% Similarity=0.153 Sum_probs=27.8
Q ss_pred cccCCCCcccCCCCeec-cCCcccCHHhhhhhcC--CCCccCccccc
Q psy2501 80 FICTHCNQELGTRNFFE-RDSRPYCEPDYHNLFS--PRCSYCNGPIL 123 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~-~~~~~~C~~~~~~~~~--~~C~~C~~~I~ 123 (130)
|.|..+...+.+. ... ..|..|++.+-.+.+. .+|-..++++.
T Consensus 4 ~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 6677777777654 334 7889999877765542 34666666654
No 168
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=23.85 E-value=73 Score=23.60 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=35.0
Q ss_pred ccccccccccccceeeecCcccccCCcccCCCCcccCCCCeeccCCcccCHHhhhhhcCC------------CCccCccc
Q psy2501 54 GCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP------------RCSYCNGP 121 (130)
Q Consensus 54 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~------------~C~~C~~~ 121 (130)
..|..|............+..|+..|..|..-+..+.-.+ ..=.+.||..|-.+.+++ .|..|.-.
T Consensus 71 ~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~Gg~l~~Cdn--~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 71 GICAPCKDKFLDALFLYDDDGYQSYCSICCSGETLLICGN--PDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCCSSCEECCS--TTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred chhhHHHHHHhccCcccCCCCCcccceEcCCCCeEEEeCC--CCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4555555544221112223445666666664222111000 011367899998887765 38888654
Q ss_pred cccCc
Q psy2501 122 ILDVS 126 (130)
Q Consensus 122 I~~~~ 126 (130)
....+
T Consensus 149 p~~~l 153 (386)
T 2pv0_B 149 SRSGL 153 (386)
T ss_dssp CEETT
T ss_pred chHhh
Confidence 43333
No 169
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=23.00 E-value=27 Score=15.39 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=8.7
Q ss_pred CCcccCCCCccc
Q psy2501 78 EHFICTHCNQEL 89 (130)
Q Consensus 78 ~Cf~C~~C~~~l 89 (130)
.|+.|..|+-.|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 577788887765
No 170
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=22.81 E-value=60 Score=16.92 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=24.6
Q ss_pred ccccccccccccceeeecC-----cccccCCcccCCCCcccCCCCeeccCCcccCHHhhh
Q psy2501 54 GCCSSCDKPIVGQVITALG-----KTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYH 108 (130)
Q Consensus 54 ~~C~~C~~~i~~~~~~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~ 108 (130)
..| .|+.+-.+..|...+ ..||..|.. |.. ...+.-||..|-.
T Consensus 11 ~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg-------l~~----~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-------LTT----KPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGT-------CSS----CCSSCCCCHHHHC
T ss_pred CEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC-------CCc----CCCCCEECcCccC
Confidence 456 687765555444333 468988754 211 1235678888753
No 171
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.61 E-value=46 Score=12.83 Aligned_cols=11 Identities=27% Similarity=1.035 Sum_probs=6.9
Q ss_pred cccCCCCcccC
Q psy2501 80 FICTHCNQELG 90 (130)
Q Consensus 80 f~C~~C~~~l~ 90 (130)
|.|..|+..+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 46677776654
No 172
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.58 E-value=25 Score=19.29 Aligned_cols=9 Identities=33% Similarity=1.180 Sum_probs=5.0
Q ss_pred ccccccccc
Q psy2501 55 CCSSCDKPI 63 (130)
Q Consensus 55 ~C~~C~~~i 63 (130)
.|..|+.++
T Consensus 10 ~CP~ck~~L 18 (69)
T 2pk7_A 10 ACPICKGPL 18 (69)
T ss_dssp CCTTTCCCC
T ss_pred eCCCCCCcC
Confidence 455565554
No 173
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.38 E-value=30 Score=13.53 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=7.2
Q ss_pred cccCCCCcccC
Q psy2501 80 FICTHCNQELG 90 (130)
Q Consensus 80 f~C~~C~~~l~ 90 (130)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 56777777654
No 174
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=32 Score=17.35 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=18.2
Q ss_pred ccCCcccCHHhhhhhcC--CCCccCcccccc
Q psy2501 96 ERDSRPYCEPDYHNLFS--PRCSYCNGPILD 124 (130)
Q Consensus 96 ~~~~~~~C~~~~~~~~~--~~C~~C~~~I~~ 124 (130)
...|.--|..|+.+..+ .+|.+|+-|=.|
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg 37 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPG 37 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCC
Confidence 33444557777765554 489999876443
No 175
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.95 E-value=47 Score=12.94 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=7.4
Q ss_pred cccCCCCcccC
Q psy2501 80 FICTHCNQELG 90 (130)
Q Consensus 80 f~C~~C~~~l~ 90 (130)
|.|..|+..+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 56777777664
No 176
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.71 E-value=96 Score=21.75 Aligned_cols=46 Identities=9% Similarity=0.202 Sum_probs=31.6
Q ss_pred CcccCCCCcccCCCCeeccCCcccCHHhhhhhcCC----CCcc--Ccccccc
Q psy2501 79 HFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP----RCSY--CNGPILD 124 (130)
Q Consensus 79 Cf~C~~C~~~l~~~~~~~~~~~~~C~~~~~~~~~~----~C~~--C~~~I~~ 124 (130)
=|.|..|...+.+.-....=|..||+.|..+.+.. .|-. |.+.+..
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 37888888877544222345788999988776643 5887 8887653
No 177
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.65 E-value=53 Score=18.62 Aligned_cols=34 Identities=15% Similarity=0.401 Sum_probs=21.3
Q ss_pred ccccccccccccceeeecCcccccCCcccCCCCcccCCCCee
Q psy2501 54 GCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFF 95 (130)
Q Consensus 54 ~~C~~C~~~i~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 95 (130)
..|..|++... ....... +.|..|+..+.++.|.
T Consensus 28 y~Cp~CG~~~v---~r~atGi-----W~C~~Cg~~~aggay~ 61 (83)
T 1vq8_Z 28 HACPNCGEDRV---DRQGTGI-----WQCSYCDYKFTGGSYK 61 (83)
T ss_dssp EECSSSCCEEE---EEEETTE-----EEETTTCCEEECCSSS
T ss_pred CcCCCCCCcce---eccCCCe-----EECCCCCCEecCCEec
Confidence 36999998652 1122233 4789999988766543
No 178
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=20.31 E-value=31 Score=18.48 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=17.2
Q ss_pred ccccccccccc-c-ceeeec---CcccccCC
Q psy2501 54 GCCSSCDKPIV-G-QVITAL---GKTWHPEH 79 (130)
Q Consensus 54 ~~C~~C~~~i~-~-~~~~~~---~~~~H~~C 79 (130)
..|..|++++. + ..|... ...||..|
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhc
Confidence 47999999985 2 334444 46678665
No 179
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=20.28 E-value=51 Score=23.87 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=30.3
Q ss_pred cccCCCCcccCCCCeeccCCcc-cCHHhhhhhcCCCCccCccccccCc
Q psy2501 80 FICTHCNQELGTRNFFERDSRP-YCEPDYHNLFSPRCSYCNGPILDVS 126 (130)
Q Consensus 80 f~C~~C~~~l~~~~~~~~~~~~-~C~~~~~~~~~~~C~~C~~~I~~~~ 126 (130)
+.|..|-..+.... ...=|.. +|..|..+. ..|-.|..+|...+
T Consensus 296 ~~C~IC~~~~~~~v-~lpCgH~~fC~~C~~~~--~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 296 RTCKVCMDKEVSVV-FIPCGHLVVCQECAPSL--RKCPICRGIIKGTV 340 (345)
T ss_dssp CBCTTTSSSBCCEE-EETTCCEEECTTTGGGC--SBCTTTCCBCCEEE
T ss_pred CCCCccCCcCCceE-EcCCCChhHhHHHHhcC--CcCCCCCCCccCeE
Confidence 56777776664332 2344666 899997655 78999999987654
Done!