RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2501
(130 letters)
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 102 bits (255), Expect = 8e-30
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 51 TQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNL 110
+ C+ C++ I G + ALGK+WHPE F C HC + F E YCE Y
Sbjct: 23 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82
Query: 111 FSPRCS 116
F+ S
Sbjct: 83 FASGPS 88
Score = 37.0 bits (86), Expect = 2e-04
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 91 TRNFFERDSRPYCEPDYHN-LFSPRCSYCNGPILDVSIR 128
+ + ++D+ +P C++CN I +
Sbjct: 3 SGSSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLV 41
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 99.0 bits (247), Expect = 1e-28
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 40 TAEMSRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNF-FERD 98
++ S +G C++C +PI+ +++ A+GK +HP F C C++ L F +
Sbjct: 2 SSGSSGEGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDAT 61
Query: 99 SRPYCEPDYHNLFSPRCS 116
S+ +C D+H F+ S
Sbjct: 62 SQIHCIEDFHRKFASGPS 79
Score = 29.6 bits (67), Expect = 0.071
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 99 SRPYCEPDYHNLFSPRCSYCNGPILDVSIR 128
S + +C+ C+ PILD +R
Sbjct: 2 SSGSSGEGCYVATLEKCATCSQPILDRILR 31
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 97.0 bits (242), Expect = 5e-28
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 56 CSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRC 115
C C KPI +T + WH E F+CT C ++L + F RD YC + +L++
Sbjct: 8 CVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67
Query: 116 S 116
S
Sbjct: 68 S 68
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 95.8 bits (239), Expect = 1e-27
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 55 CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP 113
C +C +PI G+V+ A+GK WH EHF+C C + +ER YCE Y+ LF
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65
Score = 26.9 bits (60), Expect = 0.59
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 109 NLFSPRCSYCNGPILDVSI 127
++ P C C PI +
Sbjct: 2 SMGVPICGACRRPIEGRVV 20
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 95.5 bits (238), Expect = 2e-27
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 43 MSRQGVTTTQKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSR 100
+S C C +++ + G+ +H + F+C C Q+ F+E + R
Sbjct: 1 ISEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR 60
Query: 101 PYCEPDYHNLFSP 113
YCE D+ LF+P
Sbjct: 61 KYCEHDFQMLFAP 73
Score = 25.1 bits (55), Expect = 4.0
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 103 CEPDYHNLFSPRCSYCNGPI 122
E + L S C C G
Sbjct: 2 SEFMANALASATCERCKGGF 21
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 95.5 bits (238), Expect = 3e-27
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 55 CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
C C++P++ ++A+ WHPE F+C C T +FFE D RP+CE YH+
Sbjct: 17 KCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSG 76
Query: 115 CS 116
S
Sbjct: 77 PS 78
Score = 41.6 bits (98), Expect = 2e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 99 SRPYCEPDYHNLFSPRCSYCNGPILDVSI 127
S D+ +FSP+C CN P+L+ +
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYL 30
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 96.3 bits (240), Expect = 4e-27
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 51 TQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHN 109
++K C+ CD+ I + A + WH +HF C C+ L + + +P C+P Y
Sbjct: 1 SEKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVK 60
Query: 110 LFSPRCSYCNGPI 122
+ C C+ I
Sbjct: 61 NHAVVCQGCHNAI 73
Score = 66.3 bits (162), Expect = 2e-15
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 56 CSSCDKPIVG--QVITALGKTWHP--EHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF 111
C C I Q +T +WH E F+C+ C++ L + F + +C +
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125
Query: 112 S 112
S
Sbjct: 126 S 126
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 94.7 bits (236), Expect = 5e-27
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 56 CSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRC 115
C+ C K + +T + WH E +CT C L + F RD PYC + LF+
Sbjct: 18 CARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGP 77
Query: 116 S 116
S
Sbjct: 78 S 78
Score = 42.3 bits (100), Expect = 1e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 99 SRPYCEPDYHNLFSPRCSYCNGPILDVSIR 128
S P Y N F+PRC+ C+ + +
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGGVT 31
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 94.1 bits (234), Expect = 1e-26
Identities = 22/62 (35%), Positives = 27/62 (43%)
Query: 55 CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
C C IVG V+ A K HPE F+C CN L + +F + YCE S
Sbjct: 27 LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGP 86
Query: 115 CS 116
S
Sbjct: 87 SS 88
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 93.2 bits (232), Expect = 1e-26
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 56 CSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRC 115
C C+K I IT + WH + F+C C+++L + F + + YC Y N S
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67
Query: 116 S 116
S
Sbjct: 68 S 68
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 92.5 bits (230), Expect = 3e-26
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 56 CSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRC 115
C C IVG + + HPE ++CT C L + F + + YCE S
Sbjct: 18 CDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77
Query: 116 S 116
S
Sbjct: 78 S 78
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 92.4 bits (230), Expect = 4e-26
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 55 CCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
CS+C + ++ + + G+TWH F+C+ C Q LG+R+F YC P Y N F+
Sbjct: 7 GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 66
Query: 113 PRCS 116
S
Sbjct: 67 SGPS 70
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 91.0 bits (226), Expect = 1e-25
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 50 TTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHN 109
++ C C + I+G+VI A+ +WHPE F C C + L F + R C P ++
Sbjct: 2 SSGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61
Query: 110 LFSPRCS 116
+ S
Sbjct: 62 EKASGPS 68
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 89.8 bits (223), Expect = 3e-25
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 55 CCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
C C K I+ + + G +WH FIC C Q +GT++F +D++ +C P Y +
Sbjct: 7 GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 66
Query: 113 PRCS 116
S
Sbjct: 67 SGPS 70
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 89.3 bits (222), Expect = 8e-25
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 56 CSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP 113
C C K IV Q + G WH + F C++C Q +GT +FF + YC + F+
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAS 77
Query: 114 RCS 116
S
Sbjct: 78 GPS 80
Score = 35.8 bits (83), Expect = 4e-04
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 99 SRPYCEPDYHNLFSPRCSYCNGPIL 123
S SP+C C I+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIV 26
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 88.2 bits (219), Expect = 4e-24
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 56 CSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP 113
C C KPI + + + WH F C C L F +D++ C SP
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 67
Query: 114 RCSYCNGPIL 123
+C C I+
Sbjct: 68 KCKGCFKAIV 77
Score = 45.9 bits (109), Expect = 1e-07
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 55 CCSSCDKPIVG--QVITALGKTWHPEHFICTHC 85
C C K IV Q + G WH + F
Sbjct: 68 KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 86.7 bits (215), Expect = 6e-24
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 53 KGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNL 110
C C +++ + G+ +H + F+C C Q+ F+E + R YCE D+ L
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70
Query: 111 FS 112
F+
Sbjct: 71 FA 72
Score = 25.1 bits (55), Expect = 3.2
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 106 DYHNLFSPRCSYCNGPI 122
+ S C C G
Sbjct: 5 YFQGSASATCERCKGGF 21
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 85.6 bits (212), Expect = 1e-23
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 50 TTQKGCCSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDY 107
++ C C + +VG + AL + +H F+C+ C +L ++F+ + R YCE Y
Sbjct: 2 SSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY 61
Query: 108 HNLFSPRCSYC 118
Sbjct: 62 VATLE-SGPSS 71
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 85.2 bits (211), Expect = 3e-23
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 43 MSRQGVTTTQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRP 101
S + + C+ C + I GQ + AL K WH F C C+ L + +D P
Sbjct: 5 SSGKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGE-YISKDGVP 63
Query: 102 YCEPDYHNLFSPRCS 116
YCE DYH F S
Sbjct: 64 YCESDYHAQFGSGPS 78
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 86.9 bits (215), Expect = 9e-23
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 3 PQQLEHSVTDSSSVSYSKPNQPVHQKGKQLDCMLDSLTAEMSRQGVTTTQKGCCSSCDKP 62
+ E +T + + N + G T + C+ CD+
Sbjct: 21 GDEDERLITRLENTQFDAANGIDDEGGSG-----------GHMGSGGTPEIPMCAGCDQH 69
Query: 63 IVGQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGP 121
I+ + ++ AL + WH + C+ C+ L R F R YC+ D+ F +C+ C
Sbjct: 70 ILDRFILKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDFFKRFGTKCAACQLG 128
Query: 122 I 122
I
Sbjct: 129 I 129
Score = 61.5 bits (149), Expect = 5e-13
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 56 CSSCDKPIV--GQVITALGKTWHPEHFICTHCNQEL--GTRNFFERDSRPYCEPDYH 108
C++C I V A +H F C C ++L G + DSR C+ DY
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
Score = 42.2 bits (99), Expect = 7e-06
Identities = 7/48 (14%), Positives = 10/48 (20%)
Query: 77 PEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILD 124
Q + P C+ C+ ILD
Sbjct: 25 ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILD 72
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 86.0 bits (213), Expect = 2e-22
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 49 TTTQKGCCSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDY 107
+T + C+ CD+ I+ + ++ AL + WH + C+ C+ L R F R YC+ D+
Sbjct: 2 STPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDF 60
Query: 108 HNLFSPRCSYCNGPI 122
F +C+ C I
Sbjct: 61 FKRFGTKCAACQLGI 75
Score = 76.4 bits (188), Expect = 8e-19
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 56 CSSCDKPIV--GQVITALGKTWHPEHFICTHCNQEL--GTRNFFERDSRPYCEPDYHNLF 111
C++C I V A +H F C C ++L G + DSR C+ DY
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127
Query: 112 SPRCSYCNGPILDVSIR 128
G +
Sbjct: 128 QGGSGGSGGSGGGTPMV 144
Score = 35.2 bits (81), Expect = 0.002
Identities = 3/30 (10%), Positives = 4/30 (13%)
Query: 56 CSSCDKPIVGQVITALGKTWHPEHFICTHC 85
G + A H
Sbjct: 131 SGGSGGSGGGTPMVAASPERHDGGLQANPV 160
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 82.9 bits (205), Expect = 2e-22
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 44 SRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYC 103
S + K C C I Q + +HP+HF C +C +EL + E YC
Sbjct: 6 SGEKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTA-DARELKGELYC 64
Query: 104 EPDYHNLFSPRCS 116
P + + S
Sbjct: 65 LPCHDKMGVSGPS 77
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 82.5 bits (204), Expect = 1e-21
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 56 CSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGTRN--FFERDSRPYCEPDYHNLFS 112
C C + I + + A+ + WH + C C LG + + R C DY LF
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 64
Query: 113 PR--CSYCNGPI 122
C+ C+ I
Sbjct: 65 QDGLCASCDKRI 76
Score = 68.2 bits (167), Expect = 5e-16
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 52 QKGCCSSCDKPIVGQ--VITALGKTWHPEHFICTHCNQELGTRN-FFERDSRPYCEPDYH 108
Q G C+SCDK I + K +H E F C C + + + +S CE D +
Sbjct: 65 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 124
Query: 109 NL 110
Sbjct: 125 EW 126
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 79.5 bits (196), Expect = 4e-21
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 56 CSSCDKPIVG----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLF 111
C+ C PI G + I+ + WH + F C C+ L R F C ++
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67
Query: 112 SPRC 115
P
Sbjct: 68 GPSS 71
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 79.8 bits (197), Expect = 5e-21
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 56 CSSCDKPI-VGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
C +C + + + + G+++H F+C C + L + D+ YC+ Y + P+
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPK 69
Query: 115 CSYC 118
Sbjct: 70 GYGY 73
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 77.8 bits (192), Expect = 3e-20
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 56 CSSCDKPI-VGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYC-EPDYHNLFSP 113
C CDK + + +T+LGK WH C C + L + E + +PYC P Y +F P
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62
Query: 114 RCSYCNGPI 122
+ G
Sbjct: 63 KGFGRGGAE 71
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 80.1 bits (197), Expect = 5e-20
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 56 CSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
C C + + + + GK+WH F C C + L + ++D YC+ Y F P+
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
Query: 115 CSYCN 119
Sbjct: 178 GFGFG 182
Score = 77.8 bits (191), Expect = 4e-19
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 56 CSSCDKPI-VGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
C C K + + + G ++H F+C C + L + YC+ Y + P+
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 69
Query: 115 CSYCNGPI 122
Sbjct: 70 GKGKGMGA 77
Score = 36.5 bits (84), Expect = 8e-04
Identities = 8/71 (11%), Positives = 11/71 (15%), Gaps = 1/71 (1%)
Query: 55 CCSSCDKPIVGQVITALG-KTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP 113
C SC G G + + S
Sbjct: 57 YCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD 116
Query: 114 RCSYCNGPILD 124
C C +
Sbjct: 117 GCPRCGQAVYA 127
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 76.3 bits (188), Expect = 9e-20
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 56 CSSCDKPI-VGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCE-PDYHNLFSP 113
C CDK + + +++LGK WH C C++ L E D +P+C P Y LF
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGS 71
Query: 114 RCS 116
S
Sbjct: 72 GPS 74
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 76.4 bits (188), Expect = 1e-19
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 55 CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQEL--GTRNFFERDSRPYCEPDYHNLFS 112
C C + G + A +HPE F C C + G + + YC ++ + S
Sbjct: 17 FCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76
Query: 113 PRCS 116
S
Sbjct: 77 GPSS 80
Score = 37.8 bits (88), Expect = 7e-05
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 99 SRPYCEPDYHNLFSPRCSYCNGPILDVSIR 128
S DY F C C+ + +
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPFMV 31
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 76.0 bits (187), Expect = 1e-19
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 55 CCSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
C+ C + I + + + +H F C C + L F +DS C Y + FS
Sbjct: 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS 76
Query: 113 PRCS 116
S
Sbjct: 77 SGPS 80
Score = 37.5 bits (87), Expect = 1e-04
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 99 SRPYCEPDYHNLFSPRCSYCNGPI 122
S P Y N F+ C+ C I
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLI 25
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 75.7 bits (186), Expect = 2e-19
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 56 CSSCDKPI-VGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
C C K + + + A + +H F C++CN +L + R YC+P ++ LF +
Sbjct: 18 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 77
Query: 115 CSYCNG 120
+Y G
Sbjct: 78 GNYDEG 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 75.0 bits (184), Expect = 8e-19
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 56 CSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRN--FFERDSRPYCEPDYHNLFS 112
C+ C I ++ A+ WH C+ C +LG + + C DY LF
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 113 PRCSYCNGPI 122
+ +G
Sbjct: 68 NSGAGGSGGH 77
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 71.8 bits (176), Expect = 5e-18
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 55 CCSSCDKPIVG----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNL 110
C +C KPI G + I WH E F C C+ L + F ++ +C+ +
Sbjct: 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66
Query: 111 FSPRCSYCNG 120
+ +G
Sbjct: 67 DTDISGPSSG 76
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 69.4 bits (170), Expect = 4e-17
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 55 CCSSCDKPIVG-----QVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHN 109
C+ C PI G V+ G++WH F C C+ L + F + YC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
Query: 110 L 110
L
Sbjct: 77 L 77
Score = 40.5 bits (95), Expect = 6e-06
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 99 SRPYCEPDYHNLFSPRCSYCNGPIL 123
S Y N + +C+ C PI
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPIT 26
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 72.0 bits (176), Expect = 6e-17
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 53 KGCCSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELGT-RNFFERDSRPYCEPDYHN 109
G CS+C + I V+ A G +H + F C+ C L F + +CE D
Sbjct: 69 SGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPT 128
Query: 110 LFSPRCSYCNGPI 122
G
Sbjct: 129 ALINGHLNSGGSG 141
Score = 72.0 bits (176), Expect = 7e-17
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 56 CSSCDKPIVGQ-VITALGKTWHPEHFICTHCNQELGTRN--FFERDSRPYCEPDYHNLF- 111
C+ C I + ++ A+ WH C+ C +LG + + C DY LF
Sbjct: 8 CAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67
Query: 112 -SPRCSYCNGPI 122
S CS C I
Sbjct: 68 NSGACSACGQSI 79
Score = 26.1 bits (57), Expect = 3.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 109 NLFSPRCSYCNGPILD 124
+L RC+ C G I D
Sbjct: 2 SLSWKRCAGCGGKIAD 17
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 68.3 bits (167), Expect = 1e-16
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 55 CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFF-ERDSRPYCEPDYH 108
C SCD+ I G+V++ALGKT+HP+ F+C C + C+
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSL 71
Score = 32.1 bits (73), Expect = 0.011
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 106 DYHNLFSPRCSYCNGPILDVSIR 128
DY L+ RC C+ I +
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVS 31
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 68.9 bits (168), Expect = 2e-16
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 56 CSSCDKPIVG-QVITALGKTWHPEHFICTHCNQELGTRN--FFERDSRPYCEPDYHNLFS 112
C C + I + A+ + WH + C C LG + + R C DY L
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65
Query: 113 PRCSYCNGP 121
+G
Sbjct: 66 SGGHMGSGG 74
Score = 25.8 bits (56), Expect = 2.9
Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 52 QKGCCSSCDKPIV--GQVITALGKTWHPEHFICTHCNQELGTRNFFERD 98
G S +V + E I N + N + +
Sbjct: 66 SGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDE 114
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 68.2 bits (166), Expect = 4e-16
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 42 EMSRQGVTTTQKGCCSSCDKPIV-GQVITALGKTWHPEHFICTHCNQELGTRNF--FERD 98
G C+ C I ++ A+ WH C+ C +LG + +
Sbjct: 50 SGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKS 109
Query: 99 SRPYCEPDYHNLF 111
C DY LF
Sbjct: 110 GMILCRNDYIRLF 122
Score = 25.5 bits (55), Expect = 4.3
Identities = 7/48 (14%), Positives = 11/48 (22%)
Query: 77 PEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPILD 124
++ + L RC+ C G I D
Sbjct: 26 SQYKMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIAD 73
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 67.8 bits (165), Expect = 6e-16
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 53 KGCCSSCDKPIVG--QVITALGKTWHPEHFICTHCNQELGTRN-FFERDSRPYCEPDYHN 109
G C+SCDK I + K +H E F C C + + + +S CE D +
Sbjct: 8 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYE 67
Query: 110 LFSPRCSYCNGP 121
Sbjct: 68 WTKINGGSGGSG 79
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 53.0 bits (127), Expect = 1e-10
Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 38 SLTAEMSRQGVTTTQKGCCSSCDKPI-VGQVITALGKTWHPEHFICTHCNQEL--GTRNF 94
S + Q C+ C + + V + + G +H F C C L G
Sbjct: 2 SSGSSGQHQEAGAGDL--CALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQ 59
Query: 95 FERDSRPYCEPDYHNLFSPRCS 116
D YC S S
Sbjct: 60 HPGDGHFYCLQHLPQTDSGPSS 81
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 48.9 bits (116), Expect = 3e-09
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 56 CSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGT-RNFFERDSRPYC 103
C SC+K I G+V+ A K +HP +C C Q + + S +
Sbjct: 8 CDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 40.6 bits (95), Expect = 4e-06
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 56 CSSCDKPIV--GQVITALGKTWHPEH--FICTHCNQELGTRNFFERDSRPYCEPDYHNLF 111
C C I Q +T +WH F+C+ C++ L + F + +C +
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64
Query: 112 S 112
S
Sbjct: 65 S 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.16
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 38/136 (27%)
Query: 8 HSVTDSSSVSYS-KPNQPVHQKG--KQLDC--MLDSLTAEMSRQGVTTTQKGCCSSCDKP 62
H ++ Y K V + DC + D + + + ++ D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILSKEE-----IDH- 53
Query: 63 IVGQVITALGKTWHPEH-----FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSY 117
I+ F QE + F E +Y L SP +
Sbjct: 54 IIMSK--------DAVSGTLRLFWTLLSKQEEMVQKFVEE----VLRINYKFLMSPIKTE 101
Query: 118 CNGPILD----VSIRN 129
P + + R+
Sbjct: 102 QRQPSMMTRMYIEQRD 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.17
Identities = 15/77 (19%), Positives = 21/77 (27%), Gaps = 26/77 (33%)
Query: 14 SSVSYSKP----NQPVH------QKGKQLDCMLDSLTAEMSRQGVTTTQKGCCSSCDKPI 63
S+ S P Q H G + L +G T + +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL------KGATG--------HSQGL 277
Query: 64 VGQVITALGKTWHPEHF 80
V V A +W E F
Sbjct: 278 VTAVAIAETDSW--ESF 292
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling
protein/apoptosis complex; 1.80A {Homo sapiens} PDB:
2pop_B
Length = 94
Score = 26.8 bits (59), Expect = 1.2
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 76 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNG 120
+ C C+ + ++ H SP C + NG
Sbjct: 52 EGDTVRCFSCHAAVD---RWQYGDSAVGR---HRKVSPNCRFING 90
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 27.1 bits (61), Expect = 1.5
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 9/42 (21%)
Query: 82 CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPIL 123
C C++ D++ PRC C +
Sbjct: 126 CLDCHE---------TYDWSEFVEDFNKGEIPRCRKCGSYYV 158
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor;
apoptosis, signaling protein, zinc binding; 2.50A {Homo
sapiens}
Length = 111
Score = 26.1 bits (57), Expect = 2.3
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 76 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNG 120
+ C C+ + ++ H SP C + NG
Sbjct: 69 EGDTVRCFSCHAAVD---RWQYGDSAVGR---HRKVSPNCRFING 107
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 26.2 bits (58), Expect = 3.5
Identities = 4/41 (9%), Positives = 7/41 (17%)
Query: 82 CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPI 122
C C + + C G +
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGEL 181
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 26.3 bits (58), Expect = 3.5
Identities = 4/41 (9%), Positives = 7/41 (17%)
Query: 82 CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPI 122
C C + + C G +
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGEL 181
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 25.9 bits (56), Expect = 4.6
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 16/67 (23%)
Query: 55 CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTR-NFFERDSRPYCEPDYHNLFSP 113
CS C WH C+HC + E D +P + +
Sbjct: 210 SCSLC------------ACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLR---AE 254
Query: 114 RCSYCNG 120
C C G
Sbjct: 255 TCPSCQG 261
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A
3sip_E
Length = 116
Score = 25.3 bits (55), Expect = 4.7
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 76 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNG 120
+ C C E+G +E++ +P E H +SP C
Sbjct: 45 AGDKVKCFFCGVEIG---SWEQEDQPVPE---HQRWSPNCPLLRR 83
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila
melanogaster}
Length = 136
Score = 25.4 bits (55), Expect = 5.6
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 76 HPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNG 120
+ C C E+G +E++ +P E H +SP C
Sbjct: 67 AGDKVKCFFCGVEIG---SWEQEDQPVPE---HQRWSPNCPLLRR 105
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 25.2 bits (54), Expect = 6.3
Identities = 8/39 (20%), Positives = 10/39 (25%), Gaps = 4/39 (10%)
Query: 81 ICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCN 119
IC C+ T F + P C C
Sbjct: 77 ICNICHILKNTDGFEINQTDAKGRKTTR----PSCRECR 111
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 24.8 bits (55), Expect = 8.3
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 12/41 (29%)
Query: 82 CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNGPI 122
CT CN FE +S P P P+C C +
Sbjct: 124 CTSCNNS------FEVESAPKIPPL------PKCDKCGSLL 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.427
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,869,374
Number of extensions: 96724
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 117
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)