RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2501
         (130 letters)



>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
           Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 54.7 bits (132), Expect = 3e-12
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 80  FICTHCNQELGTRNFFERDSRPYCEPDYHNLFSP 113
           F+C  C Q+     F+E + R YCE D+  LF+P
Sbjct: 1   FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 34


>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 45

 Score = 52.4 bits (126), Expect = 3e-11
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHF 80
          C+ C++ I G  + ALGK+WHPE F
Sbjct: 21 CAHCNQVIRGPFLVALGKSWHPEEF 45



 Score = 23.9 bits (52), Expect = 2.1
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 112 SPRCSYCNGPILD 124
           +P C++CN  I  
Sbjct: 18  TPMCAHCNQVIRG 30


>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 50.1 bits (120), Expect = 2e-10
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEH 79
          C +C +PI G+V+ A+GK WH EH
Sbjct: 8  CGACRRPIEGRVVNAMGKQWHVEH 31



 Score = 29.0 bits (65), Expect = 0.020
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 109 NLFSPRCSYCNGPILD 124
           ++  P C  C  PI  
Sbjct: 2   SMGVPICGACRRPIEG 17


>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 35

 Score = 49.3 bits (118), Expect = 5e-10
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 55 CCSSCDKPIVGQVITALGKTWHPEHF 80
           C  C++P++   ++A+   WHPE F
Sbjct: 10 KCGGCNRPVLENYLSAMDTVWHPECF 35



 Score = 33.5 bits (77), Expect = 5e-04
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 106 DYHNLFSPRCSYCNGPILD 124
           D+  +FSP+C  CN P+L+
Sbjct: 2   DFLAMFSPKCGGCNRPVLE 20


>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 49

 Score = 38.6 bits (90), Expect = 7e-06
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 82  CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRC 115
           C  C + L +    ++D   YC+  Y   F P+ 
Sbjct: 2   CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 35


>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 32

 Score = 36.3 bits (84), Expect = 4e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCEPDYHNL 110
           +C  C     T +FFE D RP+CE  YH+ 
Sbjct: 1   VCGDCFTSFSTGSFFELDGRPFCELHYHHR 30


>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 42

 Score = 35.4 bits (82), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 82  CTHCNQELGTRNFFERDSRPYCEPDYHNLFSPRCSYCNG 120
           C++CN +L    +     R YC+P ++ LF  + +Y  G
Sbjct: 2   CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEG 40


>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
           FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 34.7 bits (80), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
           +CT C ++L  + F  RD   YC   + +L++
Sbjct: 1   VCTACRKQLSGQRFTARDDFAYCLNCFCDLYA 32


>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 33.6 bits (77), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
           +CT C   L  + F  RD  PYC   +  LF+
Sbjct: 1   VCTGCQTPLAGQQFTSRDEDPYCVACFGELFA 32


>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
           FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 32.5 bits (74), Expect = 0.001
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
           IC  C Q +GT++F  +D++ +C P Y    +
Sbjct: 1   ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 32


>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 32.2 bits (73), Expect = 0.001
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHF 80
          C  C + I+G+VI A+  +WHPE F
Sbjct: 1  CHQCGEFIIGRVIKAMNNSWHPECF 25


>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 32.5 bits (74), Expect = 0.001
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 55 CCSSCDKPIVGQVITALGKTWHPE 78
           C SCD+ I G+V++ALGKT+HP+
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHPD 40



 Score = 22.8 bits (49), Expect = 4.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 106 DYHNLFSPRCSYCNGPI 122
           DY  L+  RC  C+  I
Sbjct: 9   DYQRLYGTRCFSCDQFI 25


>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
           Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 31.3 bits (71), Expect = 0.003
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 80  FICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
           F+C  C +       +ER    YCE  Y+ LF 
Sbjct: 1   FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 33


>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 30.5 bits (69), Expect = 0.006
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
           +C+ C Q LG+R+F       YC P Y N F+
Sbjct: 1   LCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 32


>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
          TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 30.5 bits (69), Expect = 0.006
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 55 CCSSCDKPIVGQVITALGKTWHPEHF 80
           C++C +PI+ +++ A+GK +HP  F
Sbjct: 10 KCATCSQPILDRILRAMGKAYHPGCF 35


>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 65

 Score = 31.0 bits (70), Expect = 0.008
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
           +C  C + L +          YC+  Y   + P+
Sbjct: 1   LCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPK 34


>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 29.4 bits (66), Expect = 0.014
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 82  CTHCNQELGTRNFFERDSRPYCEPDYHNLF 111
           C  C+  L T  +  +D  PYCE DYH  F
Sbjct: 2   CQTCSVIL-TGEYISKDGVPYCESDYHAQF 30


>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
           CRIP {Rat (Rattus rattus) [TaxId: 10117]}
          Length = 48

 Score = 28.6 bits (64), Expect = 0.042
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 82  CTHCNQELGTRNFFERDSRPYCE-PDYHNLFSPR 114
           C  C + L +    E + +PYC  P Y  +F P+
Sbjct: 2   CEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPK 35


>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 26.5 bits (58), Expect = 0.17
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 56 CSSCDKPIVGQVITALGKTWHP 77
          C SC+K I G+V+ A  K +HP
Sbjct: 8  CDSCEKYITGRVLEAGEKHYHP 29


>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6,
           TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 25.6 bits (56), Expect = 0.33
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCEPDYHN 109
           +C+ C  +L  ++F+  + R YCE  Y  
Sbjct: 1   VCSTCRAQLRGQHFYAVERRAYCEGCYVA 29


>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP,
           CRIP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 33

 Score = 25.1 bits (55), Expect = 0.48
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 82  CTHCNQELGTRNFFERDSRPYCE-PDYHNLF 111
           C  C++ L      E D +P+C  P Y  LF
Sbjct: 2   CERCSKTLTPGGHAEHDGKPFCHKPCYATLF 32


>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 45

 Score = 25.5 bits (56), Expect = 0.51
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHF 80
          C  C   IVG V+ A  K  HPE F
Sbjct: 21 CDKCGSGIVGAVVKARDKYRHPECF 45


>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6,
           TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 33

 Score = 25.1 bits (55), Expect = 0.51
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 82  CTHCNQELGTRNF-FERDSRPYCEPDYHNLFS 112
           C  C++ L    F  +  S+ +C  D+H  F+
Sbjct: 2   CVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 33


>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 24.8 bits (54), Expect = 0.75
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 82  CTHCNQELGTRNFFERDSRPYCEPDYHNLFS 112
           C HC   +    F E     YCE  Y   F+
Sbjct: 2   CAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32


>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 24.4 bits (53), Expect = 0.92
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHF 80
          C  C   IVG  +    +  HPE +
Sbjct: 11 CDKCGTGIVGVFVKLRDRHRHPECY 35


>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus
          thermophilus [TaxId: 274]}
          Length = 89

 Score = 25.4 bits (56), Expect = 1.3
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 25 VHQKGKQLDCMLD--SLTAEMSRQGVT----TTQKGCCSSCDKPIVGQV 67
              G+ L+  +           +G+T       +   S  DK  VGQV
Sbjct: 14 ARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQV 62


>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 24.0 bits (52), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 56 CSSCDKPIV-GQVITALGKTWHP 77
          C  CDK +   + +++LGK WH 
Sbjct: 5  CPKCDKTVYFAEKVSSLGKDWHK 27


>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 24.1 bits (52), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 56 CSSCDKPIV-GQVITALGKTWH 76
          C+ C + I  GQ + AL K WH
Sbjct: 11 CAGCKEEIKHGQSLLALDKQWH 32


>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 24.0 bits (52), Expect = 1.7
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHF 80
          C+ C K +    +T   + WH E  
Sbjct: 11 CARCSKTLTQGGVTYRDQPWHRECL 35



 Score = 22.4 bits (48), Expect = 5.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 105 PDYHNLFSPRCSYCNGPI 122
           P Y N F+PRC+ C+  +
Sbjct: 1   PCYENKFAPRCARCSKTL 18


>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia
          coli [TaxId: 562]}
          Length = 95

 Score = 25.0 bits (55), Expect = 1.8
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 28 KGKQLDCMLD-SLTAEM-----SRQGVTTTQKGCCSSCDKPIVGQV 67
          KG  ++  L  S   +            T  +      DK ++GQV
Sbjct: 17 KGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQV 62


>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 89

 Score = 24.6 bits (54), Expect = 2.2
 Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 6/46 (13%)

Query: 28 KGKQLDCML--DSLTAEMSRQGVTTTQKG----CCSSCDKPIVGQV 67
          +GK+L   +           +G+               DK  VG++
Sbjct: 17 QGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGEL 62


>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 23.4 bits (50), Expect = 2.4
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHFICTHCNQE 88
          C +C K + GQ  TA       + + C  C + 
Sbjct: 2  CVTCSKKLAGQRFTA-----VEDQYYCVDCYKN 29


>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 90

 Score = 24.4 bits (53), Expect = 2.4
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 25 VHQKGKQLDCMLDSLTAEMSRQG-------VTTTQKGCCSSCDKPIVGQVITALGKTWHP 77
              GK L+  +   +  +  +        V    +   S  DK +VGQV   + K   P
Sbjct: 14 AKLTGKALEMNI-GYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKP 72

Query: 78 EHF 80
          + +
Sbjct: 73 DAY 75


>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 418

 Score = 25.4 bits (55), Expect = 2.5
 Identities = 9/48 (18%), Positives = 15/48 (31%)

Query: 38  SLTAEMSRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHC 85
           ++   +               CDK + G +I AL     P  F+    
Sbjct: 133 AMATAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGP 180


>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII,
           N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
          Length = 103

 Score = 24.6 bits (53), Expect = 2.7
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 20/71 (28%)

Query: 52  QKGCCSSCDKPIVGQVITALGKTWHPEH--------------FICTHCNQELGT-RNFFE 96
           Q G C  C + +   V     +  H +H               +C  C+   G  ++ F 
Sbjct: 19  QNGKCLICQRELNPDV-----QANHLDHDHELNGPKAGKVRGLLCNLCDAAEGQMKHKFN 73

Query: 97  RDSRPYCEPDY 107
           R        DY
Sbjct: 74  RSGLKGQGVDY 84


>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 22.9 bits (49), Expect = 3.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHF 80
          C  C KPI    +T   + WH E F
Sbjct: 1  CVQCKKPITTGGVTYREQPWHKECF 25


>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1,
           FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 32

 Score = 22.7 bits (48), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 82  CTHCNQELGTRNFFERDSRPYC 103
           C++C Q +GT +FF +    YC
Sbjct: 2   CSNCKQVIGTGSFFPKGEDFYC 23


>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 22.4 bits (48), Expect = 4.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCE 104
           +CT C   L  +  F  + + YCE
Sbjct: 1   VCTDCGTNLKQKGHFFVEDQIYCE 24


>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score = 24.4 bits (52), Expect = 5.1
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 55  CCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSRPYCEPDYHNLFSPR 114
                 K ++ Q +  L +     + I  H +  L        ++    E        P+
Sbjct: 87  ERLGVLKCLITQNVDDLHERAGSRNVIHLHGS--LRVVRCTSCNNSFEVESAPKIPPLPK 144

Query: 115 CSYCNGPI 122
           C  C   +
Sbjct: 145 CDKCGSLL 152


>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase,
          catalytic domain {Alcaligenes faecalis [TaxId: 511]}
          Length = 358

 Score = 24.4 bits (52), Expect = 5.5
 Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 35 MLDSLTAEMSRQGVTTTQKGCCSSCDKPIVGQVITAL------GKTWHPEHF 80
          +          QGVTT   G C     P+      A       G ++    F
Sbjct: 14 LKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARF 65


>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 31

 Score = 22.1 bits (47), Expect = 6.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 81  ICTHCNQELGTRNFFERDSRPYCE 104
           +C  CN  L  + +F  +   YCE
Sbjct: 1   VCADCNLNLKQKGYFFVEGELYCE 24


>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain
           {Escherichia coli [TaxId: 562]}
          Length = 320

 Score = 24.1 bits (50), Expect = 6.4
 Identities = 4/78 (5%), Positives = 17/78 (21%)

Query: 41  AEMSRQGVTTTQKGCCSSCDKPIVGQVITALGKTWHPEHFICTHCNQELGTRNFFERDSR 100
                 G+   +     S       + +  + +   P   +      + G  ++   ++ 
Sbjct: 54  KWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEAL 113

Query: 101 PYCEPDYHNLFSPRCSYC 118
                           + 
Sbjct: 114 LEEALRLGADVVGAIPHF 131


>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1,
          FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 22.2 bits (47), Expect = 6.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 56 CSSCDKPIVGQVITALGKTWHPEHF 80
          C  C+K I    IT   + WH + F
Sbjct: 1  CVKCNKAITSGGITYQDQPWHADCF 25


>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
          FHL2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 21.7 bits (46), Expect = 8.1
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 56 CSSCDKPIVGQ----VITALGKTWHPEHF 80
          C+ C  PI G      I+   + WH + F
Sbjct: 1  CAGCTNPISGLGGTKYISFEERQWHNDCF 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 482,036
Number of extensions: 21093
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 69
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)