BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2503
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
          Length = 232

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 22  IPKATLSSILICAVIFLVDYQIVKPLWKFYSKLPILILVTAG 63
           IP  T   +  CA I LVDY++ +     Y+ LP    + AG
Sbjct: 127 IPNETYPDVPYCANINLVDYEVCQ---GAYNGLPAKTTLCAG 165


>pdb|3DJC|A Chain A, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|B Chain B, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|C Chain C, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|D Chain D, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|E Chain E, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|F Chain F, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|G Chain G, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|H Chain H, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|I Chain I, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|J Chain J, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|K Chain K, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
 pdb|3DJC|L Chain L, Crystal Structure Of Pantothenate Kinase From Legionella
          Pneumophila
          Length = 266

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 26 TLSSILICAVIFLVDYQIVKPLWKFYSKLPILI 58
          T+  I IC+V+  VDY +     K++S  P L+
Sbjct: 57 TIRKIAICSVVPQVDYSLRSACVKYFSIDPFLL 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.336    0.151    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,850,498
Number of Sequences: 62578
Number of extensions: 52185
Number of successful extensions: 163
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 2
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)