Query psy2503
Match_columns 79
No_of_seqs 102 out of 1011
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:54:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236|consensus 99.5 6.4E-15 1.4E-19 115.0 5.1 78 1-78 404-488 (665)
2 TIGR00815 sulP high affinity s 99.4 1.6E-13 3.4E-18 104.9 6.1 77 2-78 337-419 (563)
3 PRK11660 putative transporter; 99.4 3.6E-13 7.8E-18 103.1 6.1 78 1-78 356-440 (568)
4 COG0659 SUL1 Sulfate permease 99.4 5.2E-13 1.1E-17 102.6 6.3 78 1-78 325-409 (554)
5 PF00916 Sulfate_transp: Sulfa 99.2 4.5E-11 9.8E-16 83.4 6.5 53 1-53 224-276 (280)
6 PRK10720 uracil transporter; P 97.2 0.0016 3.4E-08 49.0 7.1 73 5-78 308-405 (428)
7 TIGR03616 RutG pyrimidine util 96.6 0.014 2.9E-07 44.1 7.5 43 3-46 325-371 (429)
8 TIGR00801 ncs2 uracil-xanthine 96.4 0.013 2.8E-07 43.8 6.1 49 2-51 315-365 (415)
9 TIGR03173 pbuX xanthine permea 96.1 0.022 4.7E-07 42.2 6.3 48 3-51 300-349 (406)
10 TIGR00834 ae anion exchange pr 86.4 2.3 5E-05 35.4 5.9 36 3-39 755-790 (900)
11 PF00955 HCO3_cotransp: HCO3- 79.2 0.58 1.3E-05 36.5 -0.1 36 4-40 437-472 (510)
12 COG2252 Xanthine/uracil/vitami 79.1 2.7 5.8E-05 32.4 3.4 69 3-74 328-403 (436)
13 KOG1172|consensus 69.2 16 0.00034 30.6 5.6 50 3-53 731-784 (876)
14 PF05552 TM_helix: Conserved T 68.7 13 0.00027 20.0 3.6 38 14-51 7-46 (53)
15 PF00860 Xan_ur_permease: Perm 61.1 11 0.00023 27.9 3.1 22 11-32 324-345 (389)
16 PRK12658 putative monovalent c 59.6 12 0.00025 24.2 2.7 37 17-53 67-104 (125)
17 TIGR00941 2a6301s03 Multicompo 55.3 16 0.00036 22.7 2.8 36 18-53 64-100 (104)
18 PRK12661 putative monovalent c 48.8 23 0.00049 23.3 2.8 36 17-52 92-128 (140)
19 PRK08600 putative monovalent c 44.1 31 0.00068 21.8 2.8 35 18-52 64-99 (113)
20 PRK09094 putative monovalent c 43.7 32 0.0007 21.8 2.8 35 18-52 68-103 (114)
21 PF05437 AzlD: Branched-chain 43.0 37 0.00079 20.1 2.9 25 14-38 31-55 (99)
22 COG1006 MnhC Multisubunit Na+/ 42.7 32 0.00069 21.9 2.7 35 16-50 65-100 (115)
23 PRK07946 putative monovalent c 38.9 39 0.00084 22.8 2.8 37 17-53 67-104 (163)
24 PRK12660 putative monovalent c 37.4 45 0.00098 20.9 2.8 32 21-52 68-100 (114)
25 TIGR00832 acr3 arsenical-resis 36.1 36 0.00079 24.8 2.5 44 31-74 52-110 (328)
26 PRK08388 putative monovalent c 35.3 56 0.0012 20.6 3.0 33 21-53 75-108 (119)
27 COG4392 Predicted membrane pro 34.9 45 0.00096 21.1 2.4 22 14-35 36-57 (107)
28 PRK11412 putative uracil/xanth 33.6 1.9E+02 0.0041 22.2 6.1 25 14-39 335-359 (433)
29 COG4129 Predicted membrane pro 33.6 2E+02 0.0043 21.4 6.6 47 5-53 17-63 (332)
30 PRK10726 hypothetical protein; 32.2 1.3E+02 0.0029 18.9 4.2 25 12-36 52-76 (105)
31 PF14362 DUF4407: Domain of un 32.2 1.8E+02 0.0038 20.6 5.5 40 14-53 36-76 (301)
32 COG1738 yhhQ Uncharacterized m 31.2 1.9E+02 0.0042 20.4 5.6 35 18-52 120-154 (233)
33 COG2056 Predicted permease [Ge 27.8 1.9E+02 0.0041 22.5 5.1 34 18-51 260-293 (444)
34 PRK11660 putative transporter; 25.9 1.4E+02 0.0031 23.3 4.4 34 4-37 112-146 (568)
35 PF01146 Caveolin: Caveolin; 25.4 28 0.00061 23.0 0.4 37 42-78 50-94 (148)
36 PRK12659 putative monovalent c 25.0 86 0.0019 19.7 2.6 34 19-52 69-103 (117)
37 COG4064 MtrG Tetrahydromethano 24.8 78 0.0017 18.7 2.1 15 63-77 51-65 (75)
38 COG0659 SUL1 Sulfate permease 24.5 1.3E+02 0.0029 23.7 4.0 38 8-45 112-151 (554)
39 PRK14404 membrane protein; Pro 23.8 2.6E+02 0.0056 19.4 5.3 13 40-52 188-200 (201)
40 PF03956 DUF340: Membrane prot 23.8 1E+02 0.0023 20.9 3.0 34 20-53 23-57 (191)
41 COG2233 UraA Xanthine/uracil p 22.8 1.2E+02 0.0025 23.7 3.3 17 14-30 340-356 (451)
42 TIGR00843 benE benzoate transp 22.3 1.8E+02 0.004 22.1 4.3 29 3-31 112-142 (395)
43 PF03871 RNA_pol_Rpb5_N: RNA p 22.3 48 0.001 19.9 0.9 14 40-53 3-16 (93)
44 PF07291 MauE: Methylamine uti 21.9 2.6E+02 0.0056 18.8 4.7 58 15-72 5-68 (184)
45 PF11286 DUF3087: Protein of u 21.5 2.7E+02 0.0059 18.8 4.8 51 3-53 22-88 (165)
46 PRK07375 putative monovalent c 20.5 1.4E+02 0.0031 18.4 2.9 34 20-53 68-102 (112)
No 1
>KOG0236|consensus
Probab=99.54 E-value=6.4e-15 Score=114.97 Aligned_cols=78 Identities=35% Similarity=0.593 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh-hccHHHHHHHHhcCCc--cce----EeeehhchHHHHHHHHH
Q psy2503 1 MFILGTLVLLALELITPFFRFIPKATLSSILICAVIF-LVDYQIVKPLWKFYSK--LPI----LILVTAGSEVQVLNSII 73 (79)
Q Consensus 1 ~i~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~-li~~~~~~~l~k~~~~--~~~----~~tl~~~l~~Gi~~gv~ 73 (79)
++++++.+++++.+++|+++|+|+|+|||+++.++.+ +.|.++.+++||.+|. ++| ++|++.++|.|+.+|++
T Consensus 404 ~i~~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~ 483 (665)
T KOG0236|consen 404 GIVSAALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVA 483 (665)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHH
Confidence 4688999999999999999999999999999999999 6799999999999999 466 89999999999999999
Q ss_pred HHHHc
Q psy2503 74 FNLDF 78 (79)
Q Consensus 74 ~s~~~ 78 (79)
.|++.
T Consensus 484 ~s~~~ 488 (665)
T KOG0236|consen 484 FSLFF 488 (665)
T ss_pred HHHHH
Confidence 99874
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.44 E-value=1.6e-13 Score=104.94 Aligned_cols=77 Identities=32% Similarity=0.544 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHhcCCc--cce----EeeehhchHHHHHHHHHHH
Q psy2503 2 FILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKFYSK--LPI----LILVTAGSEVQVLNSIIFN 75 (79)
Q Consensus 2 i~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~~~~--~~~----~~tl~~~l~~Gi~~gv~~s 75 (79)
+++++.+++.+++++|+++|+|+|+||+++++++++++|+++++++||.+|. .+| ++|++.|++.|+.+|+++|
T Consensus 337 i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~Gi~vGv~~s 416 (563)
T TIGR00815 337 VVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFFGVVFTSIEIGLLVGVALS 416 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999998 344 7788899999999999999
Q ss_pred HHc
Q psy2503 76 LDF 78 (79)
Q Consensus 76 ~~~ 78 (79)
++.
T Consensus 417 ~~~ 419 (563)
T TIGR00815 417 AAF 419 (563)
T ss_pred HHH
Confidence 864
No 3
>PRK11660 putative transporter; Provisional
Probab=99.41 E-value=3.6e-13 Score=103.13 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHhc-CCc--cce----EeeehhchHHHHHHHHH
Q psy2503 1 MFILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKF-YSK--LPI----LILVTAGSEVQVLNSII 73 (79)
Q Consensus 1 ~i~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~-~~~--~~~----~~tl~~~l~~Gi~~gv~ 73 (79)
++++++.+++.+++++|+++|+|+|+||+++++++++|+|.++++++||. +|. ..| ..|+++|++.|+.+|++
T Consensus 356 ~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~ 435 (568)
T PRK11660 356 AVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIV 435 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999886 454 344 67888999999999999
Q ss_pred HHHHc
Q psy2503 74 FNLDF 78 (79)
Q Consensus 74 ~s~~~ 78 (79)
+|++.
T Consensus 436 ~s~~~ 440 (568)
T PRK11660 436 LASLL 440 (568)
T ss_pred HHHHH
Confidence 99864
No 4
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.2e-13 Score=102.62 Aligned_cols=78 Identities=28% Similarity=0.439 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHh-cCCc-c-ce----EeeehhchHHHHHHHHH
Q psy2503 1 MFILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWK-FYSK-L-PI----LILVTAGSEVQVLNSII 73 (79)
Q Consensus 1 ~i~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k-~~~~-~-~~----~~tl~~~l~~Gi~~gv~ 73 (79)
+++|++++++++++++|+++|+|+|+||+++++++++++|++.+++++| .+|. + .+ ++|++.|++.|+.+|+.
T Consensus 325 gi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~~~t~~~tv~~~l~~GV~vGi~ 404 (554)
T COG0659 325 GIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLTVFFDLVIGVVVGIL 404 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999665 5555 3 32 88899999999999999
Q ss_pred HHHHc
Q psy2503 74 FNLDF 78 (79)
Q Consensus 74 ~s~~~ 78 (79)
+|.+.
T Consensus 405 ls~~~ 409 (554)
T COG0659 405 LACLL 409 (554)
T ss_pred HHHHH
Confidence 99864
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.20 E-value=4.5e-11 Score=83.42 Aligned_cols=53 Identities=36% Similarity=0.666 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 1 MFILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 1 ~i~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
++++++++++++++++|+++|+|+|+||+++++++++++|+++++++||.+|.
T Consensus 224 ~~~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~ 276 (280)
T PF00916_consen 224 GLISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKA 276 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChh
Confidence 36889999999999999999999999999999999999999999999999987
No 6
>PRK10720 uracil transporter; Provisional
Probab=97.23 E-value=0.0016 Score=49.05 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=55.4
Q ss_pred HHHHHHHHHH---HHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHhc--C---C-c-cce---------------Eee
Q psy2503 5 GTLVLLALEL---ITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKF--Y---S-K-LPI---------------LIL 59 (79)
Q Consensus 5 a~~vll~ll~---l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~--~---~-~-~~~---------------~~t 59 (79)
+..+++.+.+ ++++++.+|.|+++|+.+ +.+++++...+|.+||. + | . .+. ..+
T Consensus 308 a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~~ 386 (428)
T PRK10720 308 AAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAA 386 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777 899999999999999999 99999999999999652 2 1 1 110 122
Q ss_pred ehhchHHHHHHHHHHHHHc
Q psy2503 60 VTAGSEVQVLNSIIFNLDF 78 (79)
Q Consensus 60 l~~~l~~Gi~~gv~~s~~~ 78 (79)
...|+..|...|+.++++.
T Consensus 387 ~~~gi~~g~~~ai~Lnlll 405 (428)
T PRK10720 387 ELKGMALATIVGIGLSLIF 405 (428)
T ss_pred hcCcHHHHHHHHHHHHHHh
Confidence 3368888889999888764
No 7
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=96.59 E-value=0.014 Score=44.09 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHH----HHhhchHHHHHHHHHHHHHhhccHHHHHH
Q psy2503 3 ILGTLVLLALELITP----FFRFIPKATLSSILICAVIFLVDYQIVKP 46 (79)
Q Consensus 3 ~~a~~vll~ll~l~~----~~~~iP~a~Laaiii~~~~~li~~~~~~~ 46 (79)
+.+..+++.++.+.| +++.+|+|+++|+.+ ..+++++...+|.
T Consensus 325 ~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 325 FVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARI 371 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHH
Confidence 455666777778888 899999999999998 9999999988883
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=96.36 E-value=0.013 Score=43.84 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHhcC
Q psy2503 2 FILGTLVLLALEL--ITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKFY 51 (79)
Q Consensus 2 i~~a~~vll~ll~--l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~~ 51 (79)
..+++++++..++ ++++++++|.++++++.+ +.+++++...++.++|.+
T Consensus 315 ~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~ 365 (415)
T TIGR00801 315 VGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNK 365 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCc
Confidence 3577777787788 999999999999999999 899999988888887754
No 9
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=96.13 E-value=0.022 Score=42.24 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHhcC
Q psy2503 3 ILGTLVLLALEL--ITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKFY 51 (79)
Q Consensus 3 ~~a~~vll~ll~--l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~~ 51 (79)
++++..++..++ ++++++++|+++++++.+ +.+++++...++.+.|.+
T Consensus 300 ~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~ 349 (406)
T TIGR03173 300 AAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVD 349 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCc
Confidence 455555555454 899999999999999766 599999877777775544
No 10
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=86.39 E-value=2.3 Score=35.42 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc
Q psy2503 3 ILGTLVLLALELITPFFRFIPKATLSSILICAVIFLV 39 (79)
Q Consensus 3 ~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li 39 (79)
..++++.+. .+++|.+++||+|||+|+-.+-++.=+
T Consensus 755 l~~lLigls-v~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 755 LVAVLVGLS-ILMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred HHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 344444333 468999999999999999998888555
No 11
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=79.17 E-value=0.58 Score=36.50 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcc
Q psy2503 4 LGTLVLLALELITPFFRFIPKATLSSILICAVIFLVD 40 (79)
Q Consensus 4 ~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~ 40 (79)
+++++.+. .++.|+++++|+|+|+|+-.+-++.-++
T Consensus 437 ~~~Ligls-~~l~pvL~~IP~~VL~GvFlymG~~sL~ 472 (510)
T PF00955_consen 437 VHLLIGLS-LFLLPVLKLIPMPVLYGVFLYMGVTSLS 472 (510)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHhhHHHHHHHHHhheeeeec
Confidence 34444443 3678999999999999999988886653
No 12
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=79.13 E-value=2.7 Score=32.38 Aligned_cols=69 Identities=19% Similarity=0.399 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcc-HHHHHHHHhcCCc-cc----e-EeeehhchHHHHHHHHHH
Q psy2503 3 ILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVD-YQIVKPLWKFYSK-LP----I-LILVTAGSEVQVLNSIIF 74 (79)
Q Consensus 3 ~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~-~~~~~~l~k~~~~-~~----~-~~tl~~~l~~Gi~~gv~~ 74 (79)
+.+.+-++. +|++|..+.+|..+-+..+++.+..|.+ .+++. |+.-.. ++ . .-.+.+++..|+..|...
T Consensus 328 v~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~~~v~~id--~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~ 403 (436)
T COG2252 328 VTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALMLSSVKQID--WSDFTEAVPAFLTIVMMPLTYSIADGIAFGFIS 403 (436)
T ss_pred HHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHHhhhccCC--chhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445555555 8999999999999888888888887763 33321 222222 21 1 444556778888887654
No 13
>KOG1172|consensus
Probab=69.25 E-value=16 Score=30.64 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcc----HHHHHHHHhcCCc
Q psy2503 3 ILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVD----YQIVKPLWKFYSK 53 (79)
Q Consensus 3 ~~a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~----~~~~~~l~k~~~~ 53 (79)
+.++++. ...+++|.++.||+|+|.|+-.+-+.+=++ ++.++-++.-.|.
T Consensus 731 l~~llvg-ls~~~~pvL~~IP~~VL~GvFlYMgv~SL~Gnqf~eRl~Llf~p~k~ 784 (876)
T KOG1172|consen 731 LQFLLVG-LSVLLLPVLKLIPMPVLYGVFLYMGVSSLPGNQFFERLLLLFMPPKH 784 (876)
T ss_pred HHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHhhccCCccHHHHHHHHHcCCccc
Confidence 3444444 456789999999999999998887775543 4556666654433
No 14
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=68.70 E-value=13 Score=19.95 Aligned_cols=38 Identities=8% Similarity=0.348 Sum_probs=25.2
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhhccH--HHHHHHHhcC
Q psy2503 14 LITPFFRFIPKATLSSILICAVIFLVDY--QIVKPLWKFY 51 (79)
Q Consensus 14 ~l~~~~~~iP~a~Laaiii~~~~~li~~--~~~~~l~k~~ 51 (79)
+....++|+|+-.-|.++...++-..+. +-.++..+..
T Consensus 7 ~~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~ 46 (53)
T PF05552_consen 7 MLDQIIAYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKR 46 (53)
T ss_dssp ------GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456789999999999999999988773 4466665544
No 15
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=61.09 E-value=11 Score=27.90 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhchHHHHHHHHH
Q psy2503 11 ALELITPFFRFIPKATLSSILI 32 (79)
Q Consensus 11 ~ll~l~~~~~~iP~a~Laaiii 32 (79)
...+++|++..+|.++++|..+
T Consensus 324 ~~p~~~~l~~~IP~~v~gg~~l 345 (389)
T PF00860_consen 324 LSPKFAPLFASIPSPVIGGPLL 345 (389)
T ss_dssp --HHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchH
Confidence 3458889999999999877543
No 16
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=59.64 E-value=12 Score=24.15 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=25.8
Q ss_pred HHHhhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 17 PFFRFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 17 ~~~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
++...+|+| +|.||++-.+..-+-..-..+.||..++
T Consensus 67 ~~~DPLPQALvLTAIVIg~a~tA~~L~L~~r~~~~~gt 104 (125)
T PRK12658 67 GAANPLPQALILTAIVIGFGLLAFLLVLAYRAYQDLGT 104 (125)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456789999 8999988777666655556666665443
No 17
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=55.27 E-value=16 Score=22.73 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHhhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 18 FFRFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 18 ~~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
+...+|+| +|.||++-.+..=+-..-..+.||..++
T Consensus 64 ~~DPlPQALvLTAIVIg~a~tA~~Lal~~r~~~~~gt 100 (104)
T TIGR00941 64 YVDPLPQALILTAIVIGFATTALFLVVALRAYQVAGT 100 (104)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45588998 8999998888776666667777776543
No 18
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=48.76 E-value=23 Score=23.25 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHhhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCC
Q psy2503 17 PFFRFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYS 52 (79)
Q Consensus 17 ~~~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~ 52 (79)
++...+|+| +|.||++-.+..-+-..-..+.||..+
T Consensus 92 ~~~DPLPQALvLTAIVIG~a~tA~~LaL~~r~y~~~g 128 (140)
T PRK12661 92 EFVDPLVQALVLTAIVIGLATTAFILILAYRIYEEYG 128 (140)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356689999 899998877766555555556665443
No 19
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=44.13 E-value=31 Score=21.75 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHhhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCC
Q psy2503 18 FFRFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYS 52 (79)
Q Consensus 18 ~~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~ 52 (79)
+...+|+| +|.||++-.+..=+-..-..+.||..+
T Consensus 64 ~~DPlPQALvLTaIVIg~a~tAl~L~l~~r~~~~~g 99 (113)
T PRK08600 64 YVDPLPQALILTAIVISFGVTAFFLVLAYRTYKELG 99 (113)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45688998 889988776665554444555555443
No 20
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=43.70 E-value=32 Score=21.78 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHhhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCC
Q psy2503 18 FFRFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYS 52 (79)
Q Consensus 18 ~~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~ 52 (79)
+...+|+| +|.||++-.+..-+-..-..+.||..+
T Consensus 68 ~aDPLPQALvLTaIVIg~a~tA~~Lal~~r~y~~~g 103 (114)
T PRK09094 68 YTDPLPQALVLTAIVIGFAMTALFLVVALASRGLTG 103 (114)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45588998 899999887776665555556666543
No 21
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=42.97 E-value=37 Score=20.10 Aligned_cols=25 Identities=24% Similarity=0.691 Sum_probs=20.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhh
Q psy2503 14 LITPFFRFIPKATLSSILICAVIFL 38 (79)
Q Consensus 14 ~l~~~~~~iP~a~Laaiii~~~~~l 38 (79)
....+++++|-+++++++.-....-
T Consensus 31 ~~~~~l~~vp~avl~aLv~~~i~~~ 55 (99)
T PF05437_consen 31 RVRRFLRYVPPAVLAALVVPSIFFP 55 (99)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHccC
Confidence 4557889999999999998877743
No 22
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=42.67 E-value=32 Score=21.89 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHhhchHH-HHHHHHHHHHHhhccHHHHHHHHhc
Q psy2503 16 TPFFRFIPKA-TLSSILICAVIFLVDYQIVKPLWKF 50 (79)
Q Consensus 16 ~~~~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~ 50 (79)
+++...+|+| +|.||++-.+..=+=..-..+.+|.
T Consensus 65 ~~~aDPlPQALILTAIVIgfa~tal~L~l~~~~y~~ 100 (115)
T COG1006 65 TTYVDPLPQALILTAIVIGFATTALALVLAYRAYKE 100 (115)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999 8999887766544443333344443
No 23
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=38.88 E-value=39 Score=22.80 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=26.4
Q ss_pred HHHhhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 17 PFFRFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 17 ~~~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
++...+|+| +|.||++-.+..-+=..-..+.||...+
T Consensus 67 ~~aDPLPQALVLTAIVIg~a~tA~~LaL~~r~y~~~gt 104 (163)
T PRK07946 67 TMADPLAQAMILTAIVITMGITAFVLALAYRSYRLTTA 104 (163)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355688998 8999998877766666666666665543
No 24
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=37.37 E-value=45 Score=20.85 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=21.3
Q ss_pred hchHH-HHHHHHHHHHHhhccHHHHHHHHhcCC
Q psy2503 21 FIPKA-TLSSILICAVIFLVDYQIVKPLWKFYS 52 (79)
Q Consensus 21 ~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~ 52 (79)
.+|++ +|.+|++..+....=..-..+.+|...
T Consensus 68 PlpQalvLTaIVIg~av~a~lL~l~~r~~~~~~ 100 (114)
T PRK12660 68 PLLQAIVLTAIVIGFGMTAFLLVLVYRTYKVTK 100 (114)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46888 888888888766655555555555443
No 25
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=36.11 E-value=36 Score=24.82 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHhhccHHHHHHHHhcCCc-cc-----e---------EeeehhchHHHHHHHHHH
Q psy2503 31 LICAVIFLVDYQIVKPLWKFYSK-LP-----I---------LILVTAGSEVQVLNSIIF 74 (79)
Q Consensus 31 ii~~~~~li~~~~~~~l~k~~~~-~~-----~---------~~tl~~~l~~Gi~~gv~~ 74 (79)
++...---++++|+++..|+.|. .. + ++.++++.+..+.+|+.+
T Consensus 52 mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliL 110 (328)
T TIGR00832 52 MMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLIL 110 (328)
T ss_pred HHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33333333589999999999888 21 1 333445666667777654
No 26
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=35.35 E-value=56 Score=20.58 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=22.7
Q ss_pred hchHH-HHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 21 FIPKA-TLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 21 ~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
++|++ +|.++++-++..=+-..-..+.+|.+++
T Consensus 75 PlpQalvLTaIVI~~a~~A~~Lal~i~~yr~~gt 108 (119)
T PRK08388 75 PIPQALVLTSIVIGVCVLSLAMALTINAYRHYGT 108 (119)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45888 7888887777666666666666666554
No 27
>COG4392 Predicted membrane protein [Function unknown]
Probab=34.91 E-value=45 Score=21.07 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=17.4
Q ss_pred HHHHHHhhchHHHHHHHHHHHH
Q psy2503 14 LITPFFRFIPKATLSSILICAV 35 (79)
Q Consensus 14 ~l~~~~~~iP~a~Laaiii~~~ 35 (79)
..-.+++|.|.|+++|++.-..
T Consensus 36 ~v~~~L~fvP~a~ltAL~~p~v 57 (107)
T COG4392 36 WVRRFLSFVPVAILTALIAPDV 57 (107)
T ss_pred HHHHHHhhccHHHHHHHHhhhH
Confidence 3456788999999999987554
No 28
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=33.64 E-value=1.9e+02 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=16.9
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhhc
Q psy2503 14 LITPFFRFIPKATLSSILICAVIFLV 39 (79)
Q Consensus 14 ~l~~~~~~iP~a~Laaiii~~~~~li 39 (79)
.++-++..+|.|+++|..++ .+.++
T Consensus 335 K~~alia~IP~pVlGg~~~~-~Fg~I 359 (433)
T PRK11412 335 ALTRLFCSIPLPVSSAVMLV-SYLPL 359 (433)
T ss_pred HHHHHHHhCCHHHHHHHHHH-HHHHH
Confidence 34445679999999997755 33433
No 29
>COG4129 Predicted membrane protein [Function unknown]
Probab=33.59 E-value=2e+02 Score=21.36 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 5 GTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 5 a~~vll~ll~l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
|+.+.++++.. . +-..|.++.|++..+...+--..+.++.-|+.--.
T Consensus 17 ~ia~~La~~ia-~-~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g 63 (332)
T COG4129 17 GLAAGLALLIA-H-LLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLG 63 (332)
T ss_pred HHHHHHHHHHH-H-HhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHH
Confidence 34444444433 3 55689999999998888887778888877765444
No 30
>PRK10726 hypothetical protein; Provisional
Probab=32.18 E-value=1.3e+02 Score=18.88 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=18.1
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHH
Q psy2503 12 LELITPFFRFIPKATLSSILICAVI 36 (79)
Q Consensus 12 ll~l~~~~~~iP~a~Laaiii~~~~ 36 (79)
++-=+-+++.+|.+++.|+...+..
T Consensus 52 LYTWPFFLALmPvsVlvGi~l~~Ll 76 (105)
T PRK10726 52 LYTWPFFLALMPVSVLVGIALHSLL 76 (105)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3334556679999999999876543
No 31
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=32.18 E-value=1.8e+02 Score=20.63 Aligned_cols=40 Identities=23% Similarity=0.134 Sum_probs=27.5
Q ss_pred HHHHHHhh-chHHHHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 14 LITPFFRF-IPKATLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 14 ~l~~~~~~-iP~a~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
++.-++.. .|.++..|++....+-.+|...+-..+|.+.+
T Consensus 36 a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~ 76 (301)
T PF14362_consen 36 ALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGS 76 (301)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 44555553 37777888777777777887777777777663
No 32
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=31.25 E-value=1.9e+02 Score=20.43 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=26.8
Q ss_pred HHhhchHHHHHHHHHHHHHhhccHHHHHHHHhcCC
Q psy2503 18 FFRFIPKATLSSILICAVIFLVDYQIVKPLWKFYS 52 (79)
Q Consensus 18 ~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~~~ 52 (79)
.+...|+-++|+...+..-++.|..-+-++-|+.+
T Consensus 120 ~f~~~~RI~lASl~AyivsQ~~Dv~vf~~lkr~~~ 154 (233)
T COG1738 120 LFSFVPRIALASLLAYIVSQLLDVWVFNRLKRRTG 154 (233)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34457888999999999999999887766666533
No 33
>COG2056 Predicted permease [General function prediction only]
Probab=27.82 E-value=1.9e+02 Score=22.49 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=30.2
Q ss_pred HHhhchHHHHHHHHHHHHHhhccHHHHHHHHhcC
Q psy2503 18 FFRFIPKATLSSILICAVIFLVDYQIVKPLWKFY 51 (79)
Q Consensus 18 ~~~~iP~a~Laaiii~~~~~li~~~~~~~l~k~~ 51 (79)
+-..+|...+++.++....+-++++|..+.+...
T Consensus 260 ~~~smilgal~gliv~~~~gv~~~ke~d~~~~~G 293 (444)
T COG2056 260 FTDSMILGALAGLIVFFLSGVIKWKETDDVFTEG 293 (444)
T ss_pred ccccchHHHHHHHHHHHHhcceehhhhHHHHHhh
Confidence 3458999999999999999999999998888766
No 34
>PRK11660 putative transporter; Provisional
Probab=25.95 E-value=1.4e+02 Score=23.29 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=22.9
Q ss_pred HHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHh
Q psy2503 4 LGTLVLLA-LELITPFFRFIPKATLSSILICAVIF 37 (79)
Q Consensus 4 ~a~~vll~-ll~l~~~~~~iP~a~Laaiii~~~~~ 37 (79)
+|.+.++. ++-++.+.+++|++++.|.+.-+++-
T Consensus 112 ~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~ 146 (568)
T PRK11660 112 SGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIV 146 (568)
T ss_pred HHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHH
Confidence 34433333 33488899999999999877665553
No 35
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=25.39 E-value=28 Score=23.04 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCc-cc----e---EeeehhchHHHHHHHHHHHHHc
Q psy2503 42 QIVKPLWKFYSK-LP----I---LILVTAGSEVQVLNSIIFNLDF 78 (79)
Q Consensus 42 ~~~~~l~k~~~~-~~----~---~~tl~~~l~~Gi~~gv~~s~~~ 78 (79)
+.+.+.||.+.. +. | +.|+++|+..++..|+..+++.
T Consensus 50 hS~d~vW~~s~~~F~~sk~~~Yr~Ls~ilaiP~A~~~Gi~FA~ls 94 (148)
T PF01146_consen 50 HSFDCVWRLSHKTFEVSKYWCYRILSLILAIPLAFLWGILFACLS 94 (148)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788998887 42 2 8888889999998888887753
No 36
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.95 E-value=86 Score=19.69 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=22.8
Q ss_pred HhhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCC
Q psy2503 19 FRFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYS 52 (79)
Q Consensus 19 ~~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~ 52 (79)
-..+|++ +|.+|++-.+....-..-..+.+|..+
T Consensus 69 ~dPlpQAlvLTaIVIg~Av~a~~lvl~~r~~~~~~ 103 (117)
T PRK12659 69 ADPLPQALILTAIVIGFGVQAFAIVLIKRAYQVVG 103 (117)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 4567888 888888888866655555555555443
No 37
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=24.81 E-value=78 Score=18.65 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=9.6
Q ss_pred chHHHHHHHHHHHHH
Q psy2503 63 GSEVQVLNSIIFNLD 77 (79)
Q Consensus 63 ~l~~Gi~~gv~~s~~ 77 (79)
|+.+|+.+|..++..
T Consensus 51 GILYGlVIGlil~~i 65 (75)
T COG4064 51 GILYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777666543
No 38
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=24.47 E-value=1.3e+02 Score=23.72 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhc--cHHHHH
Q psy2503 8 VLLALELITPFFRFIPKATLSSILICAVIFLV--DYQIVK 45 (79)
Q Consensus 8 vll~ll~l~~~~~~iP~a~Laaiii~~~~~li--~~~~~~ 45 (79)
+++-++=++.+.+++|.+++.|.+.-.+..++ |.+++.
T Consensus 112 i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~ 151 (554)
T COG0659 112 ILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLL 151 (554)
T ss_pred HHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445678999999999999998776666665 444433
No 39
>PRK14404 membrane protein; Provisional
Probab=23.84 E-value=2.6e+02 Score=19.43 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=9.0
Q ss_pred cHHHHHHHHhcCC
Q psy2503 40 DYQIVKPLWKFYS 52 (79)
Q Consensus 40 ~~~~~~~l~k~~~ 52 (79)
+.++++++||.++
T Consensus 188 h~~~l~~~~~~~~ 200 (201)
T PRK14404 188 HRKELRGYLKAAT 200 (201)
T ss_pred hHHHHHHHHhhcc
Confidence 4577888887654
No 40
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=23.83 E-value=1e+02 Score=20.90 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=28.2
Q ss_pred hhchHHHHHHHHHHHHHhhc-cHHHHHHHHhcCCc
Q psy2503 20 RFIPKATLSSILICAVIFLV-DYQIVKPLWKFYSK 53 (79)
Q Consensus 20 ~~iP~a~Laaiii~~~~~li-~~~~~~~l~k~~~~ 53 (79)
.+..+..|-..+...+.++= |.+.+++++|.++.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~ 57 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKR 57 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHH
Confidence 45667789999999999997 56778899988887
No 41
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=22.83 E-value=1.2e+02 Score=23.72 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.4
Q ss_pred HHHHHHhhchHHHHHHH
Q psy2503 14 LITPFFRFIPKATLSSI 30 (79)
Q Consensus 14 ~l~~~~~~iP~a~Laai 30 (79)
.++-++..+|.+++++.
T Consensus 340 k~~al~~sIP~pVlGGa 356 (451)
T COG2233 340 KFGALIQSIPSPVLGGA 356 (451)
T ss_pred HHHHHHHhCChhhhhHH
Confidence 45566779999999884
No 42
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=22.33 E-value=1.8e+02 Score=22.14 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=20.7
Q ss_pred HHHHHHHH--HHHHHHHHHhhchHHHHHHHH
Q psy2503 3 ILGTLVLL--ALELITPFFRFIPKATLSSIL 31 (79)
Q Consensus 3 ~~a~~vll--~ll~l~~~~~~iP~a~Laaii 31 (79)
++++++++ ..-.+....+++|.++.++++
T Consensus 112 v~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 112 TAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 45555444 445778888899999888877
No 43
>PF03871 RNA_pol_Rpb5_N: RNA polymerase Rpb5, N-terminal domain; InterPro: IPR005571 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region, plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) (IPR000783 from INTERPRO) [, , , ]. This entry represents the N-terminal domain of eukaryotic RPB5, which has a core structure consisting of 3 layers alpha/beta/alpha []. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA pol II structure []. This module is important for positioning the downstream DNA.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 3H0G_Q 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E 1I50_E ....
Probab=22.32 E-value=48 Score=19.88 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=11.7
Q ss_pred cHHHHHHHHhcCCc
Q psy2503 40 DYQIVKPLWKFYSK 53 (79)
Q Consensus 40 ~~~~~~~l~k~~~~ 53 (79)
|-++..++||.+|+
T Consensus 3 ~~~e~~rl~rirrT 16 (93)
T PF03871_consen 3 DDEEVSRLFRIRRT 16 (93)
T ss_dssp TTHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHH
Confidence 34788999999998
No 44
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=21.91 E-value=2.6e+02 Score=18.76 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHHhhchHHHHHHHHHHHHH-hhccHHHHHHHHhcCCccc--e---EeeehhchHHHHHHHH
Q psy2503 15 ITPFFRFIPKATLSSILICAVI-FLVDYQIVKPLWKFYSKLP--I---LILVTAGSEVQVLNSI 72 (79)
Q Consensus 15 l~~~~~~iP~a~Laaiii~~~~-~li~~~~~~~l~k~~~~~~--~---~~tl~~~l~~Gi~~gv 72 (79)
..|+....=...++.+...+++ |+.|++++.+..+..|... + .+.....+|..+.++.
T Consensus 5 ~~P~v~~~~r~~l~llf~~aai~Kl~d~~~F~~~i~~y~llP~~~~~~~A~~lP~~El~~gl~L 68 (184)
T PF07291_consen 5 NDPVVSLLLRLFLALLFLYAAISKLRDPEAFAASIAAYRLLPDWLVRPVAWALPWLELALGLLL 68 (184)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666678887777766 7789999888877655411 1 4444445555444433
No 45
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.47 E-value=2.7e+02 Score=18.82 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchHH------------HHHHHHHHHHHhhcc----HHHHHHHHhcCCc
Q psy2503 3 ILGTLVLLALELITPFFRFIPKA------------TLSSILICAVIFLVD----YQIVKPLWKFYSK 53 (79)
Q Consensus 3 ~~a~~vll~ll~l~~~~~~iP~a------------~Laaiii~~~~~li~----~~~~~~l~k~~~~ 53 (79)
+.+.+..+.+.+-+-+.+.-|.+ ++|+++..+..+-++ .+|..+.||-++.
T Consensus 22 ~v~~lai~sl~~s~llI~lFg~~~~~nf~~NllGVil~~~~~~~~l~~~k~~p~m~Ev~YvW~LKq~ 88 (165)
T PF11286_consen 22 CVASLAILSLAFSQLLIALFGGESGGNFHWNLLGVILGLLLTSALLRQLKTHPFMTEVYYVWQLKQL 88 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCceeeeHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34555556666666666666652 566666667666553 3889999997654
No 46
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=20.49 E-value=1.4e+02 Score=18.40 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=22.6
Q ss_pred hhchHH-HHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 20 RFIPKA-TLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 20 ~~iP~a-~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
..+|++ +|.++++-++..=+-..-..+++|.+++
T Consensus 68 dplpQalvLtaIVI~~a~~A~~Lal~i~~yr~~gt 102 (112)
T PRK07375 68 DPLPQALVLTAIVIGFATTAVMLALIVKLYKDYGT 102 (112)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 367777 7778777776665555666666666554
Done!