Query psy2503
Match_columns 79
No_of_seqs 102 out of 1011
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:54:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 88.9 0.58 2E-05 34.3 4.6 33 14-47 321-353 (429)
2 1qp6_A Protein (alpha2D); de n 22.3 44 0.0015 15.9 1.3 12 42-53 8-19 (35)
3 3h0g_E DNA-directed RNA polyme 8.2 1.6E+02 0.0056 19.6 1.6 13 41-53 5-17 (210)
4 2l6w_A Beta-type platelet-deri 10.0 93 0.0032 15.4 0.0 26 26-51 10-35 (39)
5 2jy0_A Protease NS2-3; membran 7.2 2.1E+02 0.0073 12.9 1.3 14 5-18 12-25 (27)
6 2kv5_A FST, putative uncharact 7.1 2.7E+02 0.0092 13.2 1.7 10 68-77 12-21 (33)
7 1fli_A FLI-1; transcription/DN 6.6 1.4E+02 0.0047 17.6 0.5 17 37-53 35-51 (98)
8 2ypr_A Protein FEV; transcript 5.7 1.7E+02 0.0057 17.3 0.5 16 37-52 37-52 (102)
9 3dve_B Voltage-dependent N-typ 5.7 2.7E+02 0.0093 12.1 1.1 7 46-52 13-19 (23)
10 1sfk_A Core protein; alpha hel 5.6 4.6E+02 0.016 14.4 2.9 28 26-53 25-52 (76)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=88.85 E-value=0.58 Score=34.27 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHhhccHHHHHHH
Q psy2503 14 LITPFFRFIPKATLSSILICAVIFLVDYQIVKPL 47 (79)
Q Consensus 14 ~l~~~~~~iP~a~Laaiii~~~~~li~~~~~~~l 47 (79)
.++++++.+|.++++|+. ...++++...-+|.+
T Consensus 321 k~~al~~~IP~~vlgg~~-l~lfg~i~~~Gi~~l 353 (429)
T 3qe7_A 321 KLAAAIQMIPLPVMGGVS-LLLYGVIGASGIRVL 353 (429)
T ss_dssp HHHHHHTTSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 467899999999999965 458999988888777
No 2
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=22.28 E-value=44 Score=15.86 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCc
Q psy2503 42 QIVKPLWKFYSK 53 (79)
Q Consensus 42 ~~~~~l~k~~~~ 53 (79)
+.++.+||-.|.
T Consensus 8 kkfkelwkgprr 19 (35)
T 1qp6_A 8 KKFKELWKGPRR 19 (35)
T ss_dssp HHHHHHHSSSCS
T ss_pred HHHHHHhcCCcc
Confidence 568899998765
No 3
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=8.22 E-value=1.6e+02 Score=19.55 Aligned_cols=13 Identities=0% Similarity=0.171 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCc
Q psy2503 41 YQIVKPLWKFYSK 53 (79)
Q Consensus 41 ~~~~~~l~k~~~~ 53 (79)
-++..++||.+|+
T Consensus 5 ~~e~~rl~rirrT 17 (210)
T 3h0g_E 5 EKNIVRVFRAWKT 17 (210)
T ss_dssp THHHHHHHGGGSS
T ss_pred hHHHHHHHHHHHH
Confidence 4678999999998
No 4
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=9.97 E-value=93 Score=15.43 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcC
Q psy2503 26 TLSSILICAVIFLVDYQIVKPLWKFY 51 (79)
Q Consensus 26 ~Laaiii~~~~~li~~~~~~~l~k~~ 51 (79)
+++|++.....-++..-.+...||.+
T Consensus 10 vl~avlal~vi~iisLIiLi~~w~qK 35 (39)
T 2l6w_A 10 VISAILALVVLTIISLIILIMLWQKK 35 (39)
Confidence 34444444444444444455566654
No 5
>2jy0_A Protease NS2-3; membrane segment, HCV NS2 protein, membrane protein, viral protein; NMR {Synthetic}
Probab=7.16 E-value=2.1e+02 Score=12.89 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q psy2503 5 GTLVLLALELITPF 18 (79)
Q Consensus 5 a~~vll~ll~l~~~ 18 (79)
++++.+.++-++|.
T Consensus 12 ~vlv~lti~TLsP~ 25 (27)
T 2jy0_A 12 AVFVGLVLLTLSPH 25 (27)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhcCcc
Confidence 45556666666664
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=7.09 E-value=2.7e+02 Score=13.18 Aligned_cols=10 Identities=0% Similarity=0.371 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q psy2503 68 VLNSIIFNLD 77 (79)
Q Consensus 68 i~~gv~~s~~ 77 (79)
+.+|++++++
T Consensus 12 ivVGvvl~L~ 21 (33)
T 2kv5_A 12 IFVGLVLEMI 21 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6677776654
No 7
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=6.63 E-value=1.4e+02 Score=17.60 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=12.3
Q ss_pred hhccHHHHHHHHhcCCc
Q psy2503 37 FLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 37 ~li~~~~~~~l~k~~~~ 53 (79)
+++|+.++.++|-.+|.
T Consensus 35 klvd~e~VArlWG~rK~ 51 (98)
T 1fli_A 35 KMTDPDEVARRWGERKS 51 (98)
T ss_dssp EECCHHHHHHHHHHHTC
T ss_pred EEcCHHHHHHHHHhccC
Confidence 45688888888876553
No 8
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=5.75 E-value=1.7e+02 Score=17.30 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=11.6
Q ss_pred hhccHHHHHHHHhcCC
Q psy2503 37 FLVDYQIVKPLWKFYS 52 (79)
Q Consensus 37 ~li~~~~~~~l~k~~~ 52 (79)
++.|++++.++|-.+|
T Consensus 37 kl~dp~~VArlWG~rK 52 (102)
T 2ypr_A 37 KLTDPDEVARRWGERK 52 (102)
T ss_dssp ECSSHHHHHHHHHHHT
T ss_pred EecChHHHHHHHHHhc
Confidence 4567888888886554
No 9
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=5.75 E-value=2.7e+02 Score=12.08 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.3
Q ss_pred HHHhcCC
Q psy2503 46 PLWKFYS 52 (79)
Q Consensus 46 ~l~k~~~ 52 (79)
+.||.+|
T Consensus 13 d~~r~~k 19 (23)
T 3dve_B 13 DFYKQNK 19 (26)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 4455443
No 10
>1sfk_A Core protein; alpha helix, viral protein; 3.20A {Kunjin virus} SCOP: a.190.1.1
Probab=5.62 E-value=4.6e+02 Score=14.35 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhcCCc
Q psy2503 26 TLSSILICAVIFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 26 ~Laaiii~~~~~li~~~~~~~l~k~~~~ 53 (79)
+++.+......++--...+++.||.-..
T Consensus 25 ~m~~v~f~~f~g~k~t~~Lk~~Wr~v~k 52 (76)
T 1sfk_A 25 VLALLAFFRFTAIAPTRAVLDRWRSVNK 52 (76)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHhcCCH
Confidence 3444444443333345778888886543
Done!