Query psy2503
Match_columns 79
No_of_seqs 102 out of 1011
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 17:54:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2503.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2503hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 24.5 29 0.0021 15.0 2.1 14 63-76 13-26 (32)
2 d1dzfa1 c.52.3.1 (A:5-143) Euk 20.9 9 0.00066 22.3 -0.1 14 40-53 1-14 (139)
3 d2onkc1 f.58.1.1 (C:1-252) Mol 6.1 2.7E+02 0.019 16.0 4.7 18 36-53 30-47 (252)
4 d1hbxg_ a.4.5.21 (G:) Serum re 5.8 78 0.0057 18.7 0.6 16 37-52 33-48 (155)
5 d1nh2b_ a.32.1.1 (B:) Large ch 5.4 1.1E+02 0.0078 14.4 0.9 11 41-51 33-43 (46)
6 d1duxc_ a.4.5.21 (C:) Elk-1 {H 5.4 1.3E+02 0.0092 15.9 1.3 17 37-53 31-47 (86)
7 d1nvpb_ a.32.1.1 (B:) Large ch 5.1 1.2E+02 0.0086 14.0 0.9 11 41-51 31-41 (43)
8 d1wija_ a.140.5.1 (A:) Ethylen 4.8 2.7E+02 0.02 15.6 2.6 24 30-53 77-101 (127)
9 d1wwxa1 a.4.5.21 (A:8-101) E74 4.3 83 0.006 17.0 -0.1 16 37-52 33-48 (94)
10 d1flia_ a.4.5.21 (A:) Fli-1 {H 4.1 1.2E+02 0.0085 16.5 0.5 16 37-52 35-50 (98)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.49 E-value=29 Score=15.05 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=7.1
Q ss_pred chHHHHHHHHHHHH
Q psy2503 63 GSEVQVLNSIIFNL 76 (79)
Q Consensus 63 ~l~~Gi~~gv~~s~ 76 (79)
.+-.|+.+|+..++
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 34445555555544
No 2
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.88 E-value=9 Score=22.32 Aligned_cols=14 Identities=14% Similarity=0.574 Sum_probs=11.2
Q ss_pred cHHHHHHHHhcCCc
Q psy2503 40 DYQIVKPLWKFYSK 53 (79)
Q Consensus 40 ~~~~~~~l~k~~~~ 53 (79)
|-++..++||.+|+
T Consensus 1 ~d~e~~rlfr~rrT 14 (139)
T d1dzfa1 1 NERNISRLWRAFRT 14 (139)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 34788899998887
No 3
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.10 E-value=2.7e+02 Score=15.98 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=11.5
Q ss_pred HhhccHHHHHHHHhcCCc
Q psy2503 36 IFLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 36 ~~li~~~~~~~l~k~~~~ 53 (79)
.+..+.++.++.|+.+..
T Consensus 30 ~s~~~~~n~~~~~~~~~~ 47 (252)
T d2onkc1 30 LQLFNFDEFLKAASDPAV 47 (252)
T ss_dssp TTTTTHHHHHHHHHCHHH
T ss_pred HHHcCHHHHHHHHcCHHH
Confidence 355667777777775544
No 4
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.83 E-value=78 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=11.5
Q ss_pred hhccHHHHHHHHhcCC
Q psy2503 37 FLVDYQIVKPLWKFYS 52 (79)
Q Consensus 37 ~li~~~~~~~l~k~~~ 52 (79)
+++|.+++.++|-.+|
T Consensus 33 kl~~~~~VA~lWG~rK 48 (155)
T d1hbxg_ 33 KLLQAEEVARLWGIRK 48 (155)
T ss_dssp EETTHHHHHHHHHHGG
T ss_pred EeCCHHHHHHHHHhhc
Confidence 4667888888886554
No 5
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.41 E-value=1.1e+02 Score=14.36 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=8.1
Q ss_pred HHHHHHHHhcC
Q psy2503 41 YQIVKPLWKFY 51 (79)
Q Consensus 41 ~~~~~~l~k~~ 51 (79)
.+++++.|..+
T Consensus 33 L~eLk~~We~K 43 (46)
T d1nh2b_ 33 LQDLKNIWQKK 43 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47888888753
No 6
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.40 E-value=1.3e+02 Score=15.90 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=12.7
Q ss_pred hhccHHHHHHHHhcCCc
Q psy2503 37 FLVDYQIVKPLWKFYSK 53 (79)
Q Consensus 37 ~li~~~~~~~l~k~~~~ 53 (79)
+++|+.++.++|-.+|.
T Consensus 31 klv~~~~VA~lWG~~Kn 47 (86)
T d1duxc_ 31 KLVDAEEVARLWGLRKN 47 (86)
T ss_dssp ECTTHHHHHHHHHHTTT
T ss_pred EecCHHHHHHHHHhccC
Confidence 46688889999976654
No 7
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.05 E-value=1.2e+02 Score=14.02 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=8.0
Q ss_pred HHHHHHHHhcC
Q psy2503 41 YQIVKPLWKFY 51 (79)
Q Consensus 41 ~~~~~~l~k~~ 51 (79)
.+++++.|..+
T Consensus 31 L~eLk~~We~K 41 (43)
T d1nvpb_ 31 LMELKTLWENK 41 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 47888888753
No 8
>d1wija_ a.140.5.1 (A:) Ethylene insensitive 3 (EIN3)-like protein 3, EIL3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.80 E-value=2.7e+02 Score=15.58 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=15.8
Q ss_pred HHHHHHHhhc-cHHHHHHHHhcCCc
Q psy2503 30 ILICAVIFLV-DYQIVKPLWKFYSK 53 (79)
Q Consensus 30 iii~~~~~li-~~~~~~~l~k~~~~ 53 (79)
++..+..+|. |+..++++-|.+|.
T Consensus 77 vL~aVIKHmsPd~~kir~lVr~sk~ 101 (127)
T d1wija_ 77 VLTAVINHMLPDIAKIKRHVRQSKC 101 (127)
T ss_dssp HHHHHHHHTGGGHHHHHHTTTTSSS
T ss_pred HHHHHHHHhCCcHHHHHHHHHHhHH
Confidence 3344445665 78888888887765
No 9
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.30 E-value=83 Score=17.00 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=11.8
Q ss_pred hhccHHHHHHHHhcCC
Q psy2503 37 FLVDYQIVKPLWKFYS 52 (79)
Q Consensus 37 ~li~~~~~~~l~k~~~ 52 (79)
+++|++++.++|-.+|
T Consensus 33 kl~d~~~VA~lWG~~K 48 (94)
T d1wwxa1 33 RVVKSEALAKMWGQRK 48 (94)
T ss_dssp ECSCHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHhhc
Confidence 4668888888886554
No 10
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.13 E-value=1.2e+02 Score=16.45 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=11.5
Q ss_pred hhccHHHHHHHHhcCC
Q psy2503 37 FLVDYQIVKPLWKFYS 52 (79)
Q Consensus 37 ~li~~~~~~~l~k~~~ 52 (79)
+++|.+++.++|-.+|
T Consensus 35 kl~~~~~VA~lWG~~K 50 (98)
T d1flia_ 35 KMTDPDEVARRWGERK 50 (98)
T ss_dssp EECCHHHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHHhh
Confidence 4567888888887644
Done!