RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2503
(79 letters)
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 42.6 bits (101), Expect = 2e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 2 FILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWK 49
++ +VLL L +TP +IP A L++I+I A+I L+D+ + LWK
Sbjct: 224 IVMAVVVLLVLLFLTPLLAYIPMAVLAAIIIVALIGLIDWSELIRLWK 271
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple
SulP family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively
low affinities. Most function by SO42- :H+symport, but
SO42- :HCO3- antiport has been reported for the rat
protein (spP45380). The bacterial proteins vary in size
from 434 residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues.
The eukaryotic proteins vary in size from 611 residues
to 893 residues with one exception, a protein designated
"early nodulin 70 protein" from Glycine max which is
reported to be of 485 residues. Thus, the eukaryotic
proteins are almost without exception larger than the
prokaryotic proteins. These proteins exhibit 10-13
putative transmembrane a-helical spanners (TMSs)
depending on the protein. The phylogenetic tree for the
SulP family reveals five principal branches. Three of
these are bacterial specific as follows: one bears a
single protein from M. tuberculosis; a second bears two
proteins, one from M. tuberculosis, the other from
Synechocystis sp, and the third bears all remaining
prokaryotic proteins. The remaining two clusters bear
only eukaryotic proteins with the animal proteins all
localized to one branch and the plant and fungal
proteins localized to the other. The generalized
transport reactions catalyzed by SulP family proteins
are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+
(in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3-
(out) [Transport and binding proteins, Anions].
Length = 563
Score = 42.3 bits (100), Expect = 3e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 2 FILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKFYSKLPILILVT 61
+ +VLL L ++TP F +IP+A L++I+I AV L+DY+ + LWK K+ ++ +
Sbjct: 337 VVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWK-ADKMDFVVWLV 395
Query: 62 A 62
Sbjct: 396 T 396
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 39.6 bits (93), Expect = 3e-05
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 2 FILGTLVLLALELITPFFRFIPKATLSSILICAVIFLVDYQIVKPLWKFYSKLPILILVT 61
I L+LL L + P +IP A L+++LI L+D+ ++KPL + + +L+L+T
Sbjct: 326 IIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLT 385
Query: 62 A 62
Sbjct: 386 T 386
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA;
Provisional.
Length = 921
Score = 29.2 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 10 LALELITPFFRFIPKATLSSILICAVIFLV-DYQIVKPLWKF 50
LA E + P + +P A L +L+ +V+FL+ + KPLW+F
Sbjct: 287 LANEALKPALQQLPFALLILVLLTSVLFLLLRRYLAKPLWRF 328
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 27.0 bits (60), Expect = 0.90
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 52 SKLPILILVTAGSEVQV 68
SK P +IL+ GSEV +
Sbjct: 538 SKGPDIILIATGSEVSL 554
>gnl|CDD|224475 COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport
and metabolism].
Length = 342
Score = 26.1 bits (58), Expect = 1.9
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 27 LSSILICAVIFLVDYQIVKPLWKFYSKLPILILVTAGSEVQVL------NSIIFNLDF 78
L +LI + + L K + + GS V + +I N
Sbjct: 17 LVLLLILGGVGYIGILYFFALSPPLGKNKKTVTIPPGSSVSEIGSELEKQKVIKNARV 74
>gnl|CDD|216808 pfam01957, NfeD, NfeD-like C-terminal, partner-binding.
NfeD-like proteins are widely distributed throughout
prokaryotes and are frequently associated with genes
encoding stomatin-like proteins (slipins). There appear
to be three major groups: an ancestral group with only
an N-terminal serine protease domain and this
C-terminal beta sheet-rich domain which is structurally
very similar to the OB-fold domain, associated with its
neighboring slipin cluster; a second major group with
an additional middle, membrane-spanning domain,
associated in some species with eoslipin and in others
with yqfA; a final 'artificial' group which unites
truncated forms lacking the protease region and
associated with their ancestral gene partner, either
yqfA or eoslipin. This NefD, C-terminal, domain appears
to be the major one for relating to the associated
protein. NfeD homologues are clearly reliant on their
conserved gene neighbor which is assumed to be
necessary for function, either through direct physical
interaction or by functioning in the same pathway,
possibly involve with lipid-rafts.
Length = 144
Score = 24.6 bits (54), Expect = 5.3
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 FILGTLVLLALELITPFFRFIPKATLSSILICAVIFLV 39
ILG LVLL E +TP F F+ L++++I A++
Sbjct: 3 IILG-LVLLVAEALTPGFGFLGLGGLAALVIGALLLFP 39
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 24.1 bits (53), Expect = 9.6
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 15/42 (35%)
Query: 48 WKFYSKLPIL-------------ILVTAGSEV--QVLNSIIF 74
W+ YS P L LV G V V +S++F
Sbjct: 271 WRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYGTVEHSVLF 312
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.336 0.151 0.445
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,031,240
Number of extensions: 326800
Number of successful extensions: 845
Number of sequences better than 10.0: 1
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 88
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.3 bits)