Query psy2507
Match_columns 111
No_of_seqs 176 out of 1138
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 17:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 99.7 4.6E-18 1E-22 132.6 5.7 57 2-62 232-288 (292)
2 KOG2157|consensus 99.7 9.9E-17 2.2E-21 136.2 5.8 63 3-65 374-436 (497)
3 KOG2156|consensus 99.4 9.9E-14 2.1E-18 118.9 3.8 56 4-59 474-529 (662)
4 PF14398 ATPgrasp_YheCD: YheC/ 98.8 1.6E-08 3.4E-13 79.3 6.1 49 6-54 209-258 (262)
5 PF07478 Dala_Dala_lig_C: D-al 98.1 7.2E-06 1.6E-10 62.1 6.3 34 10-43 155-188 (203)
6 PRK01966 ddl D-alanyl-alanine 98.0 1.2E-05 2.7E-10 64.3 6.4 36 6-41 277-312 (333)
7 PRK14568 vanB D-alanine--D-lac 98.0 1.8E-05 4E-10 63.5 7.0 36 5-40 285-320 (343)
8 PRK14569 D-alanyl-alanine synt 98.0 2.4E-05 5.2E-10 61.7 7.2 46 7-52 242-293 (296)
9 PRK14570 D-alanyl-alanine synt 98.0 2.3E-05 5E-10 64.1 7.0 50 5-54 290-346 (364)
10 COG1181 DdlA D-alanine-D-alani 97.8 3.1E-05 6.8E-10 62.8 5.1 39 5-43 260-299 (317)
11 TIGR01205 D_ala_D_alaTIGR D-al 97.8 9.5E-05 2.1E-09 57.7 6.9 34 7-40 262-295 (315)
12 PRK14571 D-alanyl-alanine synt 97.7 0.00011 2.4E-09 57.5 6.9 36 5-41 241-276 (299)
13 PRK14572 D-alanyl-alanine synt 97.7 0.00012 2.6E-09 59.0 6.7 48 5-53 291-344 (347)
14 PRK14573 bifunctional D-alanyl 97.6 0.00016 3.4E-09 64.3 7.0 50 5-54 731-786 (809)
15 PRK01372 ddl D-alanine--D-alan 97.6 0.00019 4.1E-09 55.8 6.7 34 7-40 247-280 (304)
16 KOG2158|consensus 97.5 2.8E-05 6E-10 66.8 0.2 50 3-54 399-448 (565)
17 TIGR02291 rimK_rel_E_lig alpha 97.5 0.00014 3E-09 59.3 4.2 27 7-33 247-273 (317)
18 TIGR00768 rimK_fam alpha-L-glu 97.4 0.00013 2.9E-09 55.2 3.3 28 7-34 233-260 (277)
19 PRK10446 ribosomal protein S6 97.3 0.00031 6.6E-09 55.3 4.0 26 8-34 244-269 (300)
20 TIGR02144 LysX_arch Lysine bio 97.1 0.00066 1.4E-08 52.0 4.5 28 7-34 231-258 (280)
21 PF08443 RimK: RimK-like ATP-g 96.7 0.0017 3.6E-08 48.1 3.4 29 6-35 146-174 (190)
22 PLN02257 phosphoribosylamine-- 96.6 0.0048 1.1E-07 51.7 5.5 50 6-55 265-315 (434)
23 PRK13789 phosphoribosylamine-- 96.2 0.0044 9.6E-08 51.7 3.5 50 5-54 270-319 (426)
24 TIGR01161 purK phosphoribosyla 96.0 0.025 5.3E-07 45.3 6.7 28 6-33 241-268 (352)
25 PF14397 ATPgrasp_ST: Sugar-tr 96.0 0.0099 2.2E-07 47.3 4.2 29 6-35 235-265 (285)
26 PLN02941 inositol-tetrakisphos 95.2 0.049 1.1E-06 44.6 5.7 30 7-36 279-310 (328)
27 PF15632 ATPgrasp_Ter: ATP-gra 94.8 0.033 7.2E-07 45.7 3.7 27 7-33 258-284 (329)
28 PF04174 CP_ATPgrasp_1: A circ 94.7 0.04 8.7E-07 45.3 4.0 56 6-61 68-124 (330)
29 TIGR00877 purD phosphoribosyla 94.6 0.059 1.3E-06 44.0 4.7 50 5-55 266-315 (423)
30 PRK06524 biotin carboxylase-li 94.4 0.058 1.3E-06 46.6 4.4 29 4-32 296-325 (493)
31 PRK00885 phosphoribosylamine-- 94.3 0.08 1.7E-06 43.4 4.9 49 7-56 266-314 (420)
32 PRK06849 hypothetical protein; 94.3 0.064 1.4E-06 43.5 4.1 27 6-32 252-278 (389)
33 KOG2158|consensus 94.0 0.013 2.7E-07 50.8 -0.4 58 4-62 13-70 (565)
34 TIGR03103 trio_acet_GNAT GNAT- 94.0 0.071 1.5E-06 46.1 4.1 30 7-36 497-528 (547)
35 PRK12767 carbamoyl phosphate s 93.8 0.092 2E-06 41.0 4.1 26 6-32 247-272 (326)
36 COG0189 RimK Glutathione synth 93.6 0.22 4.8E-06 40.4 6.1 28 6-34 266-293 (318)
37 PLN02948 phosphoribosylaminoim 93.5 0.16 3.5E-06 44.2 5.5 29 5-33 265-293 (577)
38 PRK06019 phosphoribosylaminoim 93.3 0.2 4.4E-06 40.6 5.4 28 6-33 243-270 (372)
39 TIGR01142 purT phosphoribosylg 93.1 0.13 2.7E-06 41.2 3.9 28 5-33 248-275 (380)
40 PRK06111 acetyl-CoA carboxylas 93.0 0.11 2.4E-06 42.7 3.5 25 8-32 271-295 (450)
41 TIGR00514 accC acetyl-CoA carb 92.9 0.14 3.1E-06 42.4 4.0 27 7-33 270-296 (449)
42 PRK13790 phosphoribosylamine-- 92.8 0.15 3.3E-06 41.7 4.0 26 6-32 227-252 (379)
43 PRK08591 acetyl-CoA carboxylas 92.7 0.15 3.3E-06 42.0 3.9 27 7-33 270-296 (451)
44 PRK05586 biotin carboxylase; V 92.1 0.19 4E-06 41.8 3.8 26 8-33 271-296 (447)
45 PF05770 Ins134_P3_kin: Inosit 91.9 0.44 9.5E-06 38.9 5.6 37 6-42 263-301 (307)
46 COG1821 Predicted ATP-utilizin 91.9 0.19 4E-06 41.0 3.4 49 3-53 231-282 (307)
47 KOG2155|consensus 91.7 0.12 2.7E-06 44.9 2.3 44 5-48 569-616 (631)
48 PRK08462 biotin carboxylase; V 91.6 0.2 4.3E-06 41.4 3.3 23 11-33 276-298 (445)
49 PLN02735 carbamoyl-phosphate s 90.6 0.29 6.4E-06 45.7 3.8 28 5-32 851-878 (1102)
50 PRK09288 purT phosphoribosylgl 90.6 0.35 7.6E-06 38.9 3.9 28 5-33 261-288 (395)
51 PRK07206 hypothetical protein; 90.4 0.25 5.5E-06 40.1 2.9 26 7-33 266-291 (416)
52 PRK07178 pyruvate carboxylase 89.8 0.47 1E-05 39.9 4.1 26 8-33 270-295 (472)
53 PRK08463 acetyl-CoA carboxylas 89.2 0.4 8.7E-06 40.5 3.3 24 10-33 273-296 (478)
54 PRK14016 cyanophycin synthetas 88.9 0.66 1.4E-05 41.5 4.5 44 6-49 417-470 (727)
55 PRK12833 acetyl-CoA carboxylas 88.7 0.51 1.1E-05 39.7 3.5 26 8-33 273-299 (467)
56 TIGR01435 glu_cys_lig_rel glut 88.0 0.64 1.4E-05 42.1 3.9 27 7-33 681-715 (737)
57 PRK06395 phosphoribosylamine-- 87.8 0.93 2E-05 38.0 4.6 49 6-55 270-318 (435)
58 TIGR01235 pyruv_carbox pyruvat 87.1 0.74 1.6E-05 43.5 3.9 26 8-33 271-296 (1143)
59 PLN02735 carbamoyl-phosphate s 86.2 1.1 2.3E-05 42.2 4.4 31 7-39 297-328 (1102)
60 TIGR02068 cya_phycin_syn cyano 86.2 0.7 1.5E-05 42.1 3.2 28 6-33 416-449 (864)
61 PF02750 Synapsin_C: Synapsin, 85.4 2.2 4.8E-05 33.2 5.1 44 6-49 154-199 (203)
62 PRK02471 bifunctional glutamat 83.7 1.4 3.1E-05 39.7 4.0 28 7-34 695-730 (752)
63 PRK05246 glutathione synthetas 83.5 1 2.2E-05 35.9 2.6 20 7-31 268-288 (316)
64 PRK05294 carB carbamoyl phosph 80.9 2.1 4.6E-05 39.8 4.0 26 6-32 818-843 (1066)
65 PRK13278 purP 5-formaminoimida 79.9 1.9 4.2E-05 35.7 3.2 25 6-30 288-312 (358)
66 PRK12999 pyruvate carboxylase; 79.2 2.8 6.1E-05 39.7 4.3 25 9-33 276-300 (1146)
67 PRK08654 pyruvate carboxylase 78.7 2.6 5.6E-05 36.1 3.6 23 10-33 273-295 (499)
68 PRK02186 argininosuccinate lya 78.2 2.4 5.2E-05 38.6 3.5 25 6-31 254-278 (887)
69 PHA02117 glutathionylspermidin 77.4 3 6.4E-05 35.2 3.6 27 6-32 105-133 (397)
70 PRK12815 carB carbamoyl phosph 77.3 3.7 8E-05 38.4 4.4 26 6-31 278-304 (1068)
71 PRK05784 phosphoribosylamine-- 76.9 3.2 6.9E-05 35.6 3.7 47 7-54 287-334 (486)
72 TIGR01369 CPSaseII_lrg carbamo 75.7 3.4 7.3E-05 38.5 3.7 25 7-32 819-843 (1050)
73 PRK12458 glutathione synthetas 74.5 3.2 6.9E-05 33.7 3.0 21 7-32 280-302 (338)
74 COG2232 Predicted ATP-dependen 74.0 2.7 5.9E-05 35.4 2.4 22 10-32 255-276 (389)
75 PF02786 CPSase_L_D2: Carbamoy 72.1 7.7 0.00017 29.6 4.4 45 8-54 157-203 (211)
76 PRK12815 carB carbamoyl phosph 71.7 4.9 0.00011 37.5 3.8 26 7-33 817-842 (1068)
77 PRK05294 carB carbamoyl phosph 71.1 4.8 0.0001 37.5 3.6 26 7-32 280-306 (1066)
78 TIGR02712 urea_carbox urea car 70.1 5.8 0.00012 37.8 3.9 26 8-33 269-295 (1201)
79 PF04556 DpnII: DpnII restrict 69.7 4.3 9.2E-05 33.1 2.6 22 10-31 197-218 (286)
80 COG2308 Uncharacterized conser 68.7 11 0.00024 32.9 5.0 56 5-60 144-200 (488)
81 PF14243 DUF4343: Domain of un 68.6 6.8 0.00015 27.8 3.2 26 7-32 93-118 (130)
82 PRK13277 5-formaminoimidazole- 65.7 7.3 0.00016 32.7 3.3 24 6-29 295-318 (366)
83 COG4770 Acetyl/propionyl-CoA c 64.4 6.4 0.00014 35.3 2.8 43 11-55 274-317 (645)
84 COG0754 Gsp Glutathionylspermi 64.1 7.6 0.00017 32.9 3.1 27 6-32 96-124 (387)
85 TIGR01369 CPSaseII_lrg carbamo 62.4 11 0.00023 35.3 4.0 26 8-33 279-305 (1050)
86 TIGR01380 glut_syn glutathione 56.8 12 0.00026 29.8 3.0 20 7-31 267-287 (312)
87 COG0439 AccC Biotin carboxylas 56.0 22 0.00047 30.6 4.6 43 11-55 274-317 (449)
88 PF13020 DUF3883: Domain of un 50.7 16 0.00035 23.8 2.4 22 9-30 29-51 (91)
89 COG1489 SfsA DNA-binding prote 48.0 21 0.00045 28.4 3.0 33 11-43 116-155 (235)
90 KOG3895|consensus 47.8 22 0.00047 30.6 3.3 51 4-54 335-393 (488)
91 PF07494 Reg_prop: Two compone 47.6 23 0.00049 17.9 2.2 13 11-23 8-20 (24)
92 PF07065 D123: D123; InterPro 46.7 21 0.00045 28.9 2.9 23 9-31 217-240 (299)
93 COG0458 CarB Carbamoylphosphat 43.9 24 0.00053 30.1 3.0 24 11-34 270-294 (400)
94 PRK10507 bifunctional glutathi 43.0 26 0.00057 31.4 3.2 26 6-32 311-338 (619)
95 PF03749 SfsA: Sugar fermentat 41.7 26 0.00057 27.1 2.7 31 11-41 106-142 (215)
96 KOG2983|consensus 41.3 28 0.0006 28.8 2.8 23 9-31 231-253 (334)
97 KOG0369|consensus 38.1 30 0.00065 32.3 2.8 23 11-33 306-328 (1176)
98 COG5321 Uncharacterized protei 38.1 30 0.00065 25.8 2.4 19 11-29 51-70 (164)
99 KOG0238|consensus 35.5 35 0.00075 30.7 2.7 43 11-55 270-313 (670)
100 cd00228 eu-GS Eukaryotic Gluta 33.9 48 0.001 28.8 3.3 42 6-47 116-161 (471)
101 PF06319 DUF1052: Protein of u 31.3 46 0.001 25.0 2.4 19 11-29 51-70 (157)
102 TIGR00372 cas4 CRISPR-associat 30.5 1.6E+02 0.0035 20.7 5.2 27 6-32 65-92 (178)
103 COG1038 PycA Pyruvate carboxyl 30.4 45 0.00097 31.7 2.6 23 11-33 280-302 (1149)
104 COG0151 PurD Phosphoribosylami 28.7 72 0.0016 27.6 3.5 46 8-54 268-313 (428)
105 PF01436 NHL: NHL repeat; Int 27.3 79 0.0017 16.2 2.3 17 12-28 6-22 (28)
106 PF02222 ATP-grasp: ATP-grasp 26.7 1.3E+02 0.0028 22.2 4.2 27 5-31 135-162 (172)
107 PHA02762 hypothetical protein; 26.4 77 0.0017 20.1 2.5 22 12-33 2-23 (62)
108 PHA00691 hypothetical protein 26.3 42 0.00092 21.5 1.3 10 16-25 10-19 (68)
109 PF13222 DUF4030: Protein of u 24.1 2.6E+02 0.0056 20.7 5.2 52 2-53 67-119 (142)
110 PF08972 DUF1902: Domain of un 21.8 2.1E+02 0.0046 17.8 4.1 45 11-55 3-50 (54)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=99.73 E-value=4.6e-18 Score=132.58 Aligned_cols=57 Identities=51% Similarity=0.958 Sum_probs=44.0
Q ss_pred CCcceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCc
Q psy2507 2 LSEKYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVGIPALDPM 62 (111)
Q Consensus 2 ~~~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~~~~~d~~ 62 (111)
..+|||+||+|||+|++++|||||||++|++..+++++..++.+|++|+++++ ++|.
T Consensus 232 ~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~----v~~~ 288 (292)
T PF03133_consen 232 RPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIV----VDPD 288 (292)
T ss_dssp SSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTT----S---
T ss_pred cccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEE----eCCC
Confidence 46899999999999999999999999999999999999999999999999988 5654
No 2
>KOG2157|consensus
Probab=99.66 E-value=9.9e-17 Score=136.18 Aligned_cols=63 Identities=51% Similarity=0.824 Sum_probs=56.8
Q ss_pred CcceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcCCC
Q psy2507 3 SEKYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVGIPALDPMLRH 65 (111)
Q Consensus 3 ~~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~~~~~d~~~~~ 65 (111)
.||||+||+|||+|++++|||||||++|+++.++..+..++..++.|++++|.++..+|...+
T Consensus 374 ~n~FElyG~DfliD~~lkpwLiEiNssP~~~~t~~~d~~l~~~l~~d~l~~v~~~~~~~~~~~ 436 (497)
T KOG2157|consen 374 ANCFELYGFDFLIDEALKPWLIEINASPDLTQTTKNDARLKSKLIDDVLKVVVDPRLDPNQAW 436 (497)
T ss_pred cchhhhhCcceeecCCCCeEEEEeecCCcccccchhhhHHHHHHHHHhhccccCccccccccc
Confidence 689999999999999999999999999999999999999999999999999965555554333
No 3
>KOG2156|consensus
Probab=99.42 E-value=9.9e-14 Score=118.86 Aligned_cols=56 Identities=55% Similarity=1.021 Sum_probs=53.1
Q ss_pred cceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCC
Q psy2507 4 EKYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVGIPAL 59 (111)
Q Consensus 4 ~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~~~~~ 59 (111)
+||||||+||++|++++|||||||.+|+++..++++-.++.+|+.++|.++|+...
T Consensus 474 ~CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p 529 (662)
T KOG2156|consen 474 SCFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVP 529 (662)
T ss_pred hhhhhhcceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecC
Confidence 59999999999999999999999999999999999999999999999999986553
No 4
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.76 E-value=1.6e-08 Score=79.33 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=40.6
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChh-hHHHHHHHHHHHHHhc
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPL-DTRLKSAMLADTLTLV 54 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~-~~~l~~~~l~d~l~lv 54 (111)
|..+|+|+.+|.+|++||||||+.|+-...... +.++..++....++.+
T Consensus 209 ~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~~~~~~~~~~~~~pl~Ya 258 (262)
T PF14398_consen 209 LGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDIGDKELIRQSYRRPLEYA 258 (262)
T ss_pred eeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcccchHHHHHHHHHHHHHH
Confidence 334499999999999999999999998877765 5668888888777764
No 5
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.12 E-value=7.2e-06 Score=62.13 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=27.7
Q ss_pred eeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH
Q psy2507 10 GFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK 43 (111)
Q Consensus 10 G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~ 43 (111)
-+||++|+++++|+||||+.|+|+..+.+.....
T Consensus 155 RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~ 188 (203)
T PF07478_consen 155 RIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAE 188 (203)
T ss_dssp EEEEEEETTTEEEEEEEESS-G-STTSHHHHHHH
T ss_pred eEEEEeccCCceEEEeccCcccccCCCHHHHHHH
Confidence 4899999999999999999999999887765443
No 6
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.04 E-value=1.2e-05 Score=64.28 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=30.6
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHH
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTR 41 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~ 41 (111)
-...++||++|+++++|+||||+.|+|+..+.+...
T Consensus 277 ~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~p~~ 312 (333)
T PRK01966 277 SGLARVDFFLTEDGEIYLNEINTMPGFTPISMYPKL 312 (333)
T ss_pred cceEEEEEEEcCCCCEEEEEeeCCCCCCcccHHHHH
Confidence 355679999999999999999999999988766543
No 7
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.02 E-value=1.8e-05 Score=63.55 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=31.0
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
|..+.++||++|+++++|++|||+.|+|+..+.+..
T Consensus 285 ~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~p~ 320 (343)
T PRK14568 285 CRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRYPR 320 (343)
T ss_pred CCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHHHH
Confidence 446778999999999999999999999998775544
No 8
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.00 E-value=2.4e-05 Score=61.71 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=35.2
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHH------HHHHHHHHHH
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRL------KSAMLADTLT 52 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l------~~~~l~d~l~ 52 (111)
...++||++|+++++|++|||+.|+|+.++.+.... ..+++..+++
T Consensus 242 G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii~ 293 (296)
T PRK14569 242 GHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIE 293 (296)
T ss_pred eEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHHH
Confidence 456699999999999999999999999887665544 2455554444
No 9
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.97 E-value=2.3e-05 Score=64.13 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=38.4
Q ss_pred ceeEEeeeEEEeC-CCCeEEEEeeCCCCCCCCChhhHHHH------HHHHHHHHHhc
Q psy2507 5 KYELYGFDILIDS-DLKPWLLEVNLSPSLGCDTPLDTRLK------SAMLADTLTLV 54 (111)
Q Consensus 5 ~FEl~G~Df~lD~-~~kpWLLEVN~~P~l~~~~~~~~~l~------~~~l~d~l~lv 54 (111)
|-.+..+||++|. ++++|++|||+.|+|+..+.+..... .++++.+++..
T Consensus 290 ~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a 346 (364)
T PRK14570 290 LRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLA 346 (364)
T ss_pred CcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4456678999996 59999999999999999887765442 55666666665
No 10
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=3.1e-05 Score=62.79 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=32.4
Q ss_pred ceeEEeeeEEEeC-CCCeEEEEeeCCCCCCCCChhhHHHH
Q psy2507 5 KYELYGFDILIDS-DLKPWLLEVNLSPSLGCDTPLDTRLK 43 (111)
Q Consensus 5 ~FEl~G~Df~lD~-~~kpWLLEVN~~P~l~~~~~~~~~l~ 43 (111)
|=.+-|+||++|+ .+++||+|||++|+|+..+.++....
T Consensus 260 ~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~ 299 (317)
T COG1181 260 CLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAA 299 (317)
T ss_pred CCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHH
Confidence 4456789999999 89999999999999998876665433
No 11
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=97.77 E-value=9.5e-05 Score=57.67 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=29.5
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
..+++||++|.++++|+||||..|++++.+.+..
T Consensus 262 G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~~~ 295 (315)
T TIGR01205 262 GLARVDFFLDEEGEIYLNEINTIPGMTAISLFPK 295 (315)
T ss_pred ceEEEEEEEeCCCCEEEEEeeCCCCCCCccHHHH
Confidence 5678999999999999999999999998765543
No 12
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.73 E-value=0.00011 Score=57.49 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=30.0
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHH
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTR 41 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~ 41 (111)
|-.+.++||+++ ++++|+||||+.|+++..+.+...
T Consensus 241 ~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~~~ 276 (299)
T PRK14571 241 CRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLPAS 276 (299)
T ss_pred CCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHHHH
Confidence 446778999998 579999999999999988766654
No 13
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.69 E-value=0.00012 Score=58.97 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=35.5
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH------HHHHHHHHHh
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK------SAMLADTLTL 53 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~------~~~l~d~l~l 53 (111)
|-...++||+++ ++++|++|||+.|+|+.++.+....+ .++++.+++.
T Consensus 291 ~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~ii~~ 344 (347)
T PRK14572 291 CKGYSRTDFIIV-DGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDLIEI 344 (347)
T ss_pred CcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345667999998 57999999999999999877665433 4555555543
No 14
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.62 E-value=0.00016 Score=64.30 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=38.2
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH------HHHHHHHHHhc
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK------SAMLADTLTLV 54 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~------~~~l~d~l~lv 54 (111)
|-.+..+||++|+++++|++|||+.|+|+..+.+..... .++++.+++..
T Consensus 731 ~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~ii~~a 786 (809)
T PRK14573 731 GKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQLIIDG 786 (809)
T ss_pred CceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455667999999999999999999999998876665422 45555555554
No 15
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=97.62 E-value=0.00019 Score=55.85 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=28.9
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
...++||++|++|++|+||||.+|++...+.+..
T Consensus 247 g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~~ 280 (304)
T PRK01372 247 GWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVPM 280 (304)
T ss_pred ceEEEEEEEcCCCCEEEEEecCCCCCCcccHHHH
Confidence 3567999999999999999999999987765443
No 16
>KOG2158|consensus
Probab=97.48 E-value=2.8e-05 Score=66.77 Aligned_cols=50 Identities=32% Similarity=0.463 Sum_probs=40.3
Q ss_pred CcceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhc
Q psy2507 3 SEKYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLV 54 (111)
Q Consensus 3 ~~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv 54 (111)
..||++.|+|++.++++.|.|+|||..|++.....++.+. .+++++++++
T Consensus 399 pacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~v 448 (565)
T KOG2158|consen 399 PACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRV 448 (565)
T ss_pred CceEEEeccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhh
Confidence 4699999999999999999999999999999876555444 4455555544
No 17
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=97.47 E-value=0.00014 Score=59.33 Aligned_cols=27 Identities=33% Similarity=0.668 Sum_probs=25.6
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
.+.|+|+++|.++.+|+||||+.|+++
T Consensus 247 ~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 247 GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 788999999988999999999999998
No 18
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.42 E-value=0.00013 Score=55.15 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=25.2
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
..+|+||++|++|++|+||||..|++..
T Consensus 233 ~~~~vD~~~~~~g~~~viEiN~~p~~~~ 260 (277)
T TIGR00768 233 DVVGIDLLESEDRGLLVNEVNPNPEFKN 260 (277)
T ss_pred CeEEEEEEEcCCCCeEEEEEcCCcchhh
Confidence 4679999999999999999999999754
No 19
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.28 E-value=0.00031 Score=55.26 Aligned_cols=26 Identities=42% Similarity=0.578 Sum_probs=23.6
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
+.|+||+.|+++ +|++|||++|++..
T Consensus 244 ~~gvD~~~~~~g-~~vlEvN~~pg~~~ 269 (300)
T PRK10446 244 VAGVDILRANRG-PLVMEVNASPGLEG 269 (300)
T ss_pred EEEEEEEEcCCC-cEEEEEECCCChhh
Confidence 789999999887 99999999999863
No 20
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.15 E-value=0.00066 Score=52.00 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.7
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
.+.|+||+.++++.++++|||..|++..
T Consensus 231 ~~~~vD~~~~~~g~~~v~EvN~~p~~~~ 258 (280)
T TIGR02144 231 GVVAIDIFESKERGLLVNEVNHVPEFKN 258 (280)
T ss_pred CeEEEEEEEcCCCCEEEEEEeCCcchhh
Confidence 5789999999999999999999999864
No 21
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=96.72 E-value=0.0017 Score=48.07 Aligned_cols=29 Identities=34% Similarity=0.633 Sum_probs=20.3
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCD 35 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~ 35 (111)
..+.|+|+ ++.++++|++|||.+|++...
T Consensus 146 l~~~giDi-~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 146 LDFAGIDI-LDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp -SEEEEEE-EEETTEEEEEEEETT---TTH
T ss_pred CCEEEEEE-EecCCCeEEEEecCCchHhHH
Confidence 46789994 566667999999999998754
No 22
>PLN02257 phosphoribosylamine--glycine ligase
Probab=96.55 E-value=0.0048 Score=51.72 Aligned_cols=50 Identities=22% Similarity=0.101 Sum_probs=37.6
Q ss_pred eeEEeeeEEEe-CCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy2507 6 YELYGFDILID-SDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVG 55 (111)
Q Consensus 6 FEl~G~Df~lD-~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~ 55 (111)
..++.+|||++ +++.||+||+|+.|+......+...+...+++-++..+.
T Consensus 265 ~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~ 315 (434)
T PLN02257 265 VGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACK 315 (434)
T ss_pred EEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHc
Confidence 45667999999 788999999999999864544444566666666666653
No 23
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.25 E-value=0.0044 Score=51.72 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=36.3
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhc
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLV 54 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv 54 (111)
+..++.+|||++++++||+||+|..|+......+...+...+++-++..+
T Consensus 270 ~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~ 319 (426)
T PRK13789 270 YRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAAS 319 (426)
T ss_pred ceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHH
Confidence 45778899999999999999999999965555555544445555444444
No 24
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=96.04 E-value=0.025 Score=45.28 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=24.7
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..++++||++++++++|++|||..|+=+
T Consensus 241 ~G~~~ve~~~~~dg~~~v~EinpR~~~s 268 (352)
T TIGR01161 241 VGVLAVEMFVLPDGRLLINELAPRVHNS 268 (352)
T ss_pred eeEEEEEEEEeCCCcEEEEEecCCCCCc
Confidence 4678899999999999999999998754
No 25
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=95.98 E-value=0.0099 Score=47.29 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=25.9
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCC--CCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLS--PSLGCD 35 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~--P~l~~~ 35 (111)
+...|.|+.+|++| |.|||.|++ |++...
T Consensus 235 ~~~iGWDvait~~G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 235 LGYIGWDVAITEDG-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred CCeEEEEEEEcCCC-cEEEEeeCCCCCCcHhh
Confidence 46789999999999 999999999 998743
No 26
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=95.22 E-value=0.049 Score=44.63 Aligned_cols=30 Identities=17% Similarity=0.456 Sum_probs=25.3
Q ss_pred eEEeeeEEEeCC--CCeEEEEeeCCCCCCCCC
Q psy2507 7 ELYGFDILIDSD--LKPWLLEVNLSPSLGCDT 36 (111)
Q Consensus 7 El~G~Df~lD~~--~kpWLLEVN~~P~l~~~~ 36 (111)
+++|+|++.|.+ .+.+++|||..|+...-.
T Consensus 279 ~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p 310 (328)
T PLN02941 279 RLFNFDMIREHGTGDRYYVIDINYFPGYAKMP 310 (328)
T ss_pred ceEEEEEEeecCCCCceEEEEecCCCccccCC
Confidence 689999999974 478999999999987543
No 27
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=94.82 E-value=0.033 Score=45.69 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=23.6
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
.++++.|..|.+|+|+|||||..||=.
T Consensus 258 g~~NiQ~r~d~~g~p~LLEINpR~sGG 284 (329)
T PF15632_consen 258 GLFNIQFRYDEDGNPKLLEINPRPSGG 284 (329)
T ss_pred ceEEEEEEEcCCCCEEEEEeCCCCccc
Confidence 467889999999999999999998854
No 28
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=94.75 E-value=0.04 Score=45.28 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=32.0
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC-CCChhhHHHHHHHHHHHHHhcCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG-CDTPLDTRLKSAMLADTLTLVGIPALDP 61 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~-~~~~~~~~l~~~~l~d~l~lv~~~~~d~ 61 (111)
..++|+|+.-+.+|+.|+||.|++-.-. ...-....+..+++-+++.-..+..+++
T Consensus 68 ~~~~g~Dl~r~~dG~w~VleDn~~~PsG~gyalenR~~~~r~~p~l~~~~~v~~l~~ 124 (330)
T PF04174_consen 68 LHFYGADLVRDPDGRWRVLEDNTRAPSGLGYALENRRAMSRVFPELFRDANVRRLAP 124 (330)
T ss_dssp -SEEEEEEEE-SSS-EEEEEEE-SS---HHHHHHHHHHHHHH-HHHHHHS-B---TT
T ss_pred EEEEEEeeeECCCCCEEEEEecCCCCcHHHHHHHHHHHHHHhChhhhhhcCcCcHHH
Confidence 4689999999999999999999974433 3333445566666666666555444444
No 29
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=94.61 E-value=0.059 Score=44.00 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=34.1
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVG 55 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~ 55 (111)
+...+.+||++++++ ||++|||..++-.....+...+...+.+-.+++++
T Consensus 266 ~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~ 315 (423)
T TIGR00877 266 YKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVE 315 (423)
T ss_pred cEeEEEEEEEEECCC-cEEEEEEccCCCccceeEecccCCCHHHHHHHHHc
Confidence 456778999999887 99999999998543332333333455565555554
No 30
>PRK06524 biotin carboxylase-like protein; Validated
Probab=94.42 E-value=0.058 Score=46.65 Aligned_cols=29 Identities=28% Similarity=0.150 Sum_probs=25.7
Q ss_pred cceeEEeeeEEEeC-CCCeEEEEeeCCCCC
Q psy2507 4 EKYELYGFDILIDS-DLKPWLLEVNLSPSL 32 (111)
Q Consensus 4 ~~FEl~G~Df~lD~-~~kpWLLEVN~~P~l 32 (111)
.|..++++||++|. ++++|++|||..|+=
T Consensus 296 G~~Gv~rVDFfvd~ddgevYfnEINPR~~G 325 (493)
T PRK06524 296 GYRGYFEVDLLHDLDADELYLGEVNPRLSG 325 (493)
T ss_pred CCEEEEEEEEEEECCCCeEEEEEEeCCccc
Confidence 57788899999996 689999999999885
No 31
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=94.35 E-value=0.08 Score=43.41 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=35.6
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVGI 56 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~~ 56 (111)
..+.+||++++++ |||+|+|..++-.....+...+...+.+-+++++.-
T Consensus 266 G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g 314 (420)
T PRK00885 266 GVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADG 314 (420)
T ss_pred eEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcC
Confidence 5577999999876 899999999985434344455555777777777653
No 32
>PRK06849 hypothetical protein; Provisional
Probab=94.27 E-value=0.064 Score=43.47 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.3
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
-...++||+.|++|++|+||||..++-
T Consensus 252 ~G~~~~df~~~~~g~~~~iEiNpR~~~ 278 (389)
T PRK06849 252 TGQISFDFIETENGDAYPIECNPRTTS 278 (389)
T ss_pred eeEEEEEEEECCCCCEEEEEecCCCCc
Confidence 346789999999999999999988774
No 33
>KOG2158|consensus
Probab=94.03 E-value=0.013 Score=50.85 Aligned_cols=58 Identities=43% Similarity=0.780 Sum_probs=52.6
Q ss_pred cceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCc
Q psy2507 4 EKYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVGIPALDPM 62 (111)
Q Consensus 4 ~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~~~~~d~~ 62 (111)
-||+.+|+|... +..++|++|+|.-|+...+...+...+..++..+++...+..-|+.
T Consensus 13 v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i~~s~~~ 70 (565)
T KOG2158|consen 13 VCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKR 70 (565)
T ss_pred eehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCCCccchh
Confidence 489999999999 8899999999999999999999999999999999999977666654
No 34
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=93.99 E-value=0.071 Score=46.06 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=25.2
Q ss_pred eEEeeeEEEeCCCCe--EEEEeeCCCCCCCCC
Q psy2507 7 ELYGFDILIDSDLKP--WLLEVNLSPSLGCDT 36 (111)
Q Consensus 7 El~G~Df~lD~~~kp--WLLEVN~~P~l~~~~ 36 (111)
.+-|+|+++++-.+| .+||||++|+|....
T Consensus 497 ~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h~ 528 (547)
T TIGR03103 497 PVVGIDFLVPDVTGPDYVIIEANERPGLANHE 528 (547)
T ss_pred CeEEEEEEeccCCCCCeEEEEecCCccccccC
Confidence 467999999886667 899999999998653
No 35
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=93.78 E-value=0.092 Score=40.99 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.9
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
...+++||++|+ +++|+||||..++-
T Consensus 247 ~G~~~vd~~~~~-g~~~viEiNpR~~g 272 (326)
T PRK12767 247 RGPLNIQCFVTD-GEPYLFEINPRFGG 272 (326)
T ss_pred eeeEEEEEEEEC-CeEEEEEEeCCCCC
Confidence 567889999998 89999999977653
No 36
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=93.63 E-value=0.22 Score=40.45 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=23.3
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
..++|+|++.+ +...+++|||.+|+.-.
T Consensus 266 l~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 266 LGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred CeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 46789999999 55789999999996543
No 37
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.53 E-value=0.16 Score=44.24 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=25.9
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
|...+.+||++++++++|++|||..|+.+
T Consensus 265 ~~Gv~~vEffv~~dG~v~v~EInpRpg~s 293 (577)
T PLN02948 265 GAGVFGVELFLLKDGQILLNEVAPRPHNS 293 (577)
T ss_pred CCeEEEEEEEEcCCCcEEEEEEeCCCCCC
Confidence 56678899999999999999999999854
No 38
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.30 E-value=0.2 Score=40.64 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.5
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..++++||++++++++|++|||..|.-+
T Consensus 243 ~G~~~vEff~~~dg~~~v~EinpR~~~s 270 (372)
T PRK06019 243 VGVLAVEFFVTGDGELLVNEIAPRPHNS 270 (372)
T ss_pred cceeEEEEEEcCCCeEEEEEecCCccCc
Confidence 4577899999999999999999999754
No 39
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=93.10 E-value=0.13 Score=41.24 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=23.9
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
+...+++||+++++ .+|++|||..|+-+
T Consensus 248 ~~G~~~ie~~~~~~-~~~viEinpR~~~~ 275 (380)
T TIGR01142 248 GYGLFGVELFVKGD-EVIFSEVSPRPHDT 275 (380)
T ss_pred CcceEEEEEEEECC-cEEEEEeecCCCCC
Confidence 35678899999976 79999999999865
No 40
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=93.04 E-value=0.11 Score=42.67 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
...+||++|+++++|++|||..++-
T Consensus 271 ~~~ve~~~~~~g~~~viEiN~R~~~ 295 (450)
T PRK06111 271 AGTIEFLVDEQKNFYFLEMNTRLQV 295 (450)
T ss_pred ceeEEEEEcCCCCEEEEEEECCcCC
Confidence 4568999999989999999999864
No 41
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=92.87 E-value=0.14 Score=42.42 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.1
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
....+||++|.++++|+||||..++-+
T Consensus 270 G~~~vef~~~~~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 270 GAGTVEFLLDKNGEFYFMEMNTRIQVE 296 (449)
T ss_pred ceEEEEEEEeCCCCEEEEEEECCCCCC
Confidence 455699999988999999999988654
No 42
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=92.76 E-value=0.15 Score=41.71 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.9
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
+.++.+|||+++++ ||+||+|..|+=
T Consensus 227 ~Gvl~~e~~lt~~g-~~viEiN~R~G~ 252 (379)
T PRK13790 227 FGVLYIGAILTKDG-PKVIEFNARFGD 252 (379)
T ss_pred eeEEEEEEEEeCCC-eEEEEEEcccCC
Confidence 34555799998876 999999998854
No 43
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=92.66 E-value=0.15 Score=42.03 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=22.8
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+.+||++|.++++|++|||..++-.
T Consensus 270 G~~~vEf~~~~~g~~~viEINpR~~~~ 296 (451)
T PRK08591 270 GAGTIEFLYEKNGEFYFIEMNTRIQVE 296 (451)
T ss_pred ceEEEEEEEcCCCCEEEEEEECCCCcc
Confidence 345689999999999999999988644
No 44
>PRK05586 biotin carboxylase; Validated
Probab=92.14 E-value=0.19 Score=41.79 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.6
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+||++|+++++|++|||..|+-+
T Consensus 271 ~~~vEf~~~~~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 271 AGTIEFLLDKDGNFYFMEMNTRIQVE 296 (447)
T ss_pred eeEEEEEEcCCCCEEEEEEECCCCCC
Confidence 45699999999999999999998654
No 45
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=91.90 E-value=0.44 Score=38.90 Aligned_cols=37 Identities=19% Similarity=0.487 Sum_probs=27.2
Q ss_pred eeEEeeeEEEeCC--CCeEEEEeeCCCCCCCCChhhHHH
Q psy2507 6 YELYGFDILIDSD--LKPWLLEVNLSPSLGCDTPLDTRL 42 (111)
Q Consensus 6 FEl~G~Df~lD~~--~kpWLLEVN~~P~l~~~~~~~~~l 42 (111)
..|||+|++.+.. ++-++|.||.-||...-..+...+
T Consensus 263 L~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l 301 (307)
T PF05770_consen 263 LTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVL 301 (307)
T ss_dssp -SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHH
T ss_pred cceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHH
Confidence 4689999999876 489999999999998655544433
No 46
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=91.89 E-value=0.19 Score=41.01 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=32.6
Q ss_pred CcceeEEeeeEEEeCCCCeEEEEeeCCCCCCCC---ChhhHHHHHHHHHHHHHh
Q psy2507 3 SEKYELYGFDILIDSDLKPWLLEVNLSPSLGCD---TPLDTRLKSAMLADTLTL 53 (111)
Q Consensus 3 ~~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~---~~~~~~l~~~~l~d~l~l 53 (111)
..|+..+|+|+++. ..||+||||..|.-... ....+.+..-+++..+.-
T Consensus 231 ~Gl~GYVGVDlVls--D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~ 282 (307)
T COG1821 231 PGLNGYVGVDLVLS--DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGK 282 (307)
T ss_pred ccccceeeEEEEec--CCcEEEEecCCCCcceeeeeccccHHHHHHHhcCcccc
Confidence 46888999999999 56999999999875432 122334444444444333
No 47
>KOG2155|consensus
Probab=91.66 E-value=0.12 Score=44.92 Aligned_cols=44 Identities=23% Similarity=0.507 Sum_probs=33.1
Q ss_pred ceeEEeeeEEE--eCC--CCeEEEEeeCCCCCCCCChhhHHHHHHHHH
Q psy2507 5 KYELYGFDILI--DSD--LKPWLLEVNLSPSLGCDTPLDTRLKSAMLA 48 (111)
Q Consensus 5 ~FEl~G~Df~l--D~~--~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~ 48 (111)
+=-+||.|+|+ |.. .+|=|||||.+|+....+.........+..
T Consensus 569 sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYhpdFfnnVFs 616 (631)
T KOG2155|consen 569 SRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYHPDFFNNVFS 616 (631)
T ss_pred hhhhhhheeeeccCCCccccceeEEEecCcchHHHhhcChhHHHhHHH
Confidence 33478999999 555 789999999999988777666655444443
No 48
>PRK08462 biotin carboxylase; Validated
Probab=91.55 E-value=0.2 Score=41.42 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.8
Q ss_pred eeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
+||++|+++++|+||||..++-.
T Consensus 276 ve~~~~~~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 276 FEFLLDSNLDFYFMEMNTRLQVE 298 (445)
T ss_pred EEEEEeCCCCEEEEEEECCcCcC
Confidence 79999988899999999999754
No 49
>PLN02735 carbamoyl-phosphate synthase
Probab=90.63 E-value=0.29 Score=45.75 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.2
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
+-.++.+||++|.++++|+||||..|+.
T Consensus 851 ~~G~~~vqf~v~~dg~~yviEiNpR~s~ 878 (1102)
T PLN02735 851 VCGLMNCQYAITPSGEVYIIEANPRASR 878 (1102)
T ss_pred CcceeeEEEEEcCCCcEEEEEEeCCCCc
Confidence 3456779999998999999999999984
No 50
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=90.63 E-value=0.35 Score=38.90 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=23.7
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
....+.+||+++++ .||++|||..|+-.
T Consensus 261 ~~G~~~ve~~~~~~-~~~viEinpR~~~~ 288 (395)
T PRK09288 261 GRGLFGVELFVKGD-EVYFSEVSPRPHDT 288 (395)
T ss_pred CeeEEEEEEEEeCC-eEEEEEecCCCCCC
Confidence 45678899999887 79999999998754
No 51
>PRK07206 hypothetical protein; Provisional
Probab=90.39 E-value=0.25 Score=40.06 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.5
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+.+||++++++ +||||||..|+=.
T Consensus 266 G~~h~E~~~~~~g-~~liEin~R~~G~ 291 (416)
T PRK07206 266 GPAHAEVMLTADG-PRLIEIGARLDGG 291 (416)
T ss_pred CCceEEEEEcCCC-CEEEEECCccCCC
Confidence 4466899999886 8999999999843
No 52
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=89.83 E-value=0.47 Score=39.93 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.2
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+||++|.++++|++|||..++-+
T Consensus 270 ~~~vEf~~d~~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 270 AGTVEFLLDADGEVYFMEMNTRVQVE 295 (472)
T ss_pred eeEEEEEEeCCCCEEEEEEeCCcCCC
Confidence 34589999999999999999998654
No 53
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=89.19 E-value=0.4 Score=40.47 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.3
Q ss_pred eeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 10 GFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 10 G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
.+||++|.++++|++|||..++-+
T Consensus 273 ~vEf~~~~~~~~y~iEiN~R~~~~ 296 (478)
T PRK08463 273 TIEFLLDDYNRFYFMEMNTRIQVE 296 (478)
T ss_pred eEEEEEcCCCCEEEEEEECCcCCC
Confidence 489999998999999999988765
No 54
>PRK14016 cyanophycin synthetase; Provisional
Probab=88.86 E-value=0.66 Score=41.49 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=29.3
Q ss_pred eeEEeeeEEEeCCC------CeEEEEeeCCCCCCCCC-h---hhHHHHHHHHHH
Q psy2507 6 YELYGFDILIDSDL------KPWLLEVNLSPSLGCDT-P---LDTRLKSAMLAD 49 (111)
Q Consensus 6 FEl~G~Df~lD~~~------kpWLLEVN~~P~l~~~~-~---~~~~l~~~~l~d 49 (111)
+.+.|+|++.++-- ..-++|||.+|++.... + ....+...++..
T Consensus 417 l~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 417 LDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred CCEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 57889999997632 34689999999997533 2 233344444444
No 55
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=88.67 E-value=0.51 Score=39.68 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.2
Q ss_pred EEeeeEEEeC-CCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDS-DLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~-~~kpWLLEVN~~P~l~ 33 (111)
...+||++|+ ++++|+||||..++-+
T Consensus 273 ~~~vEf~~~~~~g~~~~iEvNpR~~~~ 299 (467)
T PRK12833 273 AGTLEYLFDDARGEFYFIEMNTRIQVE 299 (467)
T ss_pred cceEEEEEecCCCCEEEEEEECCCCcc
Confidence 3458999984 6899999999998754
No 56
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=88.04 E-value=0.64 Score=42.08 Aligned_cols=27 Identities=26% Similarity=0.617 Sum_probs=22.4
Q ss_pred eEEeeeEEEeCCCCeE--------EEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPW--------LLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpW--------LLEVN~~P~l~ 33 (111)
.+-|+|+|+.+--+|| +||||.+|++.
T Consensus 681 ~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 681 AICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred CEEEEEEEecCCCCCccccccceEEEEEcCCcchh
Confidence 4679999997665655 89999999996
No 57
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=87.84 E-value=0.93 Score=38.01 Aligned_cols=49 Identities=10% Similarity=-0.063 Sum_probs=32.0
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVG 55 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~ 55 (111)
..++.++||+++++ ||+||+|..++=-...-+...+...+++-++..+.
T Consensus 270 ~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~ 318 (435)
T PRK06395 270 KGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKSDFVETLHQIYS 318 (435)
T ss_pred EEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhc
Confidence 35677999998665 99999999887322223334445555555555553
No 58
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=87.09 E-value=0.74 Score=43.47 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+||++|+++++|+||||..++-+
T Consensus 271 ~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 271 AGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred eEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 44599999999999999999999754
No 59
>PLN02735 carbamoyl-phosphate synthase
Probab=86.21 E-value=1.1 Score=42.17 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=23.0
Q ss_pred eEEeeeEEEe-CCCCeEEEEeeCCCCCCCCChhh
Q psy2507 7 ELYGFDILID-SDLKPWLLEVNLSPSLGCDTPLD 39 (111)
Q Consensus 7 El~G~Df~lD-~~~kpWLLEVN~~P~l~~~~~~~ 39 (111)
....+||++| +++++|+||||..++ .++.+.
T Consensus 297 G~~nVqf~l~~~~g~~~ViEVNPR~s--~ss~l~ 328 (1102)
T PLN02735 297 GGSNVQFAVNPVDGEVMIIEMNPRVS--RSSALA 328 (1102)
T ss_pred CceEEEEEEECCCCcEEEEEecCCCC--Ccchhh
Confidence 3456899999 589999999996665 344443
No 60
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=86.20 E-value=0.7 Score=42.08 Aligned_cols=28 Identities=32% Similarity=0.633 Sum_probs=23.3
Q ss_pred eeEEeeeEEEeCCCCeE------EEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPW------LLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpW------LLEVN~~P~l~ 33 (111)
..+-|+|++..+--+|| +||||.+|++.
T Consensus 416 l~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~ 449 (864)
T TIGR02068 416 LDIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLR 449 (864)
T ss_pred CCeEEEEEEecCCCCCccccCcEEEEEcCCcchh
Confidence 35679999998766665 99999999986
No 61
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=85.36 E-value=2.2 Score=33.23 Aligned_cols=44 Identities=27% Similarity=0.435 Sum_probs=29.3
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCC--CCCCCCChhhHHHHHHHHHH
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLS--PSLGCDTPLDTRLKSAMLAD 49 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~--P~l~~~~~~~~~l~~~~l~d 49 (111)
.++.|+|.+...+|+=+++|||.+ |-+..+..-|.+++..|+-.
T Consensus 154 lDI~~v~ai~~kdGke~Iievnds~m~L~g~~qeeDr~~I~dlV~~ 199 (203)
T PF02750_consen 154 LDICAVDAIHGKDGKEYIIEVNDSSMPLIGEHQEEDRRLIADLVVA 199 (203)
T ss_dssp -SEEEEEEEEETTS-EEEEEEE-TT----GGGHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEEcCCCCEEEEEecCCcccccchhHHHHHHHHHHHHHH
Confidence 367789999999999999999987 44444555566666666543
No 62
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=83.70 E-value=1.4 Score=39.73 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=22.0
Q ss_pred eEEeeeEEEeCCCCe--------EEEEeeCCCCCCC
Q psy2507 7 ELYGFDILIDSDLKP--------WLLEVNLSPSLGC 34 (111)
Q Consensus 7 El~G~Df~lD~~~kp--------WLLEVN~~P~l~~ 34 (111)
.+.|+|+++.+--+| -+||||.+|++..
T Consensus 695 ~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~m 730 (752)
T PRK02471 695 KICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYM 730 (752)
T ss_pred CEEEEEEEeCCCcccccccCCCeEEEEecCCCchhh
Confidence 578999999874333 4799999999953
No 63
>PRK05246 glutathione synthetase; Provisional
Probab=83.52 E-value=1 Score=35.90 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=15.4
Q ss_pred eEEeeeEEEeCCCCeEEEEeeC-CCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNL-SPS 31 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~-~P~ 31 (111)
...|+|++-+ ||+|||. +|.
T Consensus 268 ~~~GVDli~~-----~l~EvN~~~p~ 288 (316)
T PRK05246 268 IFVGIDVIGD-----YLTEINVTSPT 288 (316)
T ss_pred CEEEEEEeCC-----EEEEEeCCCch
Confidence 3569999932 9999996 574
No 64
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=80.91 E-value=2.1 Score=39.77 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=21.4
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
..++++||+++ ++++|+||||..|+-
T Consensus 818 ~G~~~vqf~~~-~~~~yViEiNpR~s~ 843 (1066)
T PRK05294 818 VGLMNVQFAVK-DDEVYVIEVNPRASR 843 (1066)
T ss_pred eeeEEEEEEEE-CCeEEEEEEecCCCc
Confidence 35667999998 468999999999873
No 65
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=79.89 E-value=1.9 Score=35.68 Aligned_cols=25 Identities=8% Similarity=0.231 Sum_probs=21.9
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSP 30 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P 30 (111)
..-|.+|+++++++.+|++|||..+
T Consensus 288 ~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 288 IGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred cCCceEEEEEcCCCCEEEEEEeCcc
Confidence 3456799999999999999998887
No 66
>PRK12999 pyruvate carboxylase; Reviewed
Probab=79.18 E-value=2.8 Score=39.67 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred EeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 9 YGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 9 ~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+||++|.++++|+||||..++-+
T Consensus 276 gtVEflvd~dg~~yfIEINpRlqve 300 (1146)
T PRK12999 276 GTVEFLVDADGNFYFIEVNPRIQVE 300 (1146)
T ss_pred EEEEEEEECCCCEEEEEEECCCCCc
Confidence 3489999999999999999888753
No 67
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=78.74 E-value=2.6 Score=36.10 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.6
Q ss_pred eeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 10 GFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 10 G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
.+||+++ ++++|+||||..++.+
T Consensus 273 tVEfl~~-~g~~yflEiNpRlqve 295 (499)
T PRK08654 273 TVEFLYS-NGNFYFLEMNTRLQVE 295 (499)
T ss_pred EEEEEEE-CCcEEEEEEECCCCCC
Confidence 3899997 5799999999999765
No 68
>PRK02186 argininosuccinate lyase; Provisional
Probab=78.17 E-value=2.4 Score=38.57 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=20.6
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPS 31 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~ 31 (111)
+..+++||+++++ .||+||||..++
T Consensus 254 ~G~~hvE~~~t~~-g~~liEIn~R~~ 278 (887)
T PRK02186 254 FGPAHTELRVRGD-TVVIIEINPRLA 278 (887)
T ss_pred cCceEEEEEEECC-CEEEEEECCCCC
Confidence 4557799999865 599999998876
No 69
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=77.41 E-value=3 Score=35.23 Aligned_cols=27 Identities=37% Similarity=0.839 Sum_probs=22.8
Q ss_pred eeEEe-eeEEEeCCCCeEEEEeeC-CCCC
Q psy2507 6 YELYG-FDILIDSDLKPWLLEVNL-SPSL 32 (111)
Q Consensus 6 FEl~G-~Df~lD~~~kpWLLEVN~-~P~l 32 (111)
..+|| +||.+|.++.+=|||.|+ .|+.
T Consensus 105 ~slyGRfDfa~dg~g~~KllE~NADTPT~ 133 (397)
T PHA02117 105 WGLYGRFDLIMTPNGGPKMLEYNADTPTI 133 (397)
T ss_pred CcEEEEEEEEEcCCCCeEEEEecCCCCch
Confidence 45888 999999999999999998 4543
No 70
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=77.30 E-value=3.7 Score=38.36 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=20.4
Q ss_pred eeEEeeeEEEeCC-CCeEEEEeeCCCC
Q psy2507 6 YELYGFDILIDSD-LKPWLLEVNLSPS 31 (111)
Q Consensus 6 FEl~G~Df~lD~~-~kpWLLEVN~~P~ 31 (111)
...+.++|++|.+ +++|++|||..++
T Consensus 278 ~G~~~vef~l~~~~g~~~ViEINPR~~ 304 (1068)
T PRK12815 278 VGGCNIQFALDPKSKQYYLIEVNPRVS 304 (1068)
T ss_pred CCceEEEEEEECCCCcEEEEEEecCcc
Confidence 3455699999976 7899999995554
No 71
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=76.89 E-value=3.2 Score=35.60 Aligned_cols=47 Identities=9% Similarity=-0.110 Sum_probs=29.1
Q ss_pred eEEeeeEEEe-CCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhc
Q psy2507 7 ELYGFDILID-SDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLV 54 (111)
Q Consensus 7 El~G~Df~lD-~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv 54 (111)
..+-.+||++ +++ ||+||+|...+=-....+...+...+++-++..+
T Consensus 287 G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~ 334 (486)
T PRK05784 287 GVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAA 334 (486)
T ss_pred EEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHH
Confidence 4556899998 554 9999999998822222333344444444444444
No 72
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=75.69 E-value=3.4 Score=38.48 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.9
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
.++.+||++++ +++|+||||..++-
T Consensus 819 G~~~vqf~~~~-~~~yvIEvNpR~s~ 843 (1050)
T TIGR01369 819 GLMNIQFAVKD-GEVYVIEVNPRASR 843 (1050)
T ss_pred ceEEEEEEEEC-CeEEEEEEeCCCCc
Confidence 45668999985 68999999999873
No 73
>PRK12458 glutathione synthetase; Provisional
Probab=74.54 E-value=3.2 Score=33.69 Aligned_cols=21 Identities=48% Similarity=0.689 Sum_probs=16.1
Q ss_pred eEEeeeEEEeCCCCeEEEEeeC-CC-CC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNL-SP-SL 32 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~-~P-~l 32 (111)
...|+|++ ..+|+|||. +| ++
T Consensus 280 ~~~gVDli-----~~~l~EIN~~sp~g~ 302 (338)
T PRK12458 280 FFVGLDIV-----GDKLVEVNVFSPGGL 302 (338)
T ss_pred eEEeEEEE-----CCEEEEEeCCCcchH
Confidence 36699998 246999997 89 44
No 74
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=74.01 E-value=2.7 Score=35.45 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.5
Q ss_pred eeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 10 GFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 10 G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
|+||++.++| |++||||-.+.=
T Consensus 255 GVDfvl~d~g-pyViEVNPR~qG 276 (389)
T COG2232 255 GVDFVLNDKG-PYVIEVNPRIQG 276 (389)
T ss_pred ccceEeecCC-cEEEEecCcccc
Confidence 6999999885 999999977653
No 75
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=72.14 E-value=7.7 Score=29.58 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=29.7
Q ss_pred EEeeeEEEeC-CCCeEEEEeeCCCCCCCCChhhHHH-HHHHHHHHHHhc
Q psy2507 8 LYGFDILIDS-DLKPWLLEVNLSPSLGCDTPLDTRL-KSAMLADTLTLV 54 (111)
Q Consensus 8 l~G~Df~lD~-~~kpWLLEVN~~P~l~~~~~~~~~l-~~~~l~d~l~lv 54 (111)
+.-+-|++|. +++.|+||||..-+ .+.++..++ -..+++-.++++
T Consensus 157 ~~tvef~~~~~~~~~y~lEvNpR~~--~~~p~~e~~tg~dlv~~~~~ia 203 (211)
T PF02786_consen 157 AGTVEFAVDPDDGEFYFLEVNPRLQ--REHPVTEKVTGYDLVRVQIRIA 203 (211)
T ss_dssp EEEEEEEEETTTTEEEEEEEESS----TTHHHHHHHHT--HHHHHHHHH
T ss_pred cceEEEEEccCccceeeecccCCCC--CcchHHHHHHCCCHHHHHHHHH
Confidence 4457899998 89999999997655 566665553 355666666655
No 76
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=71.70 E-value=4.9 Score=37.53 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.6
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
.++.+||++++ +++|+||||..++-+
T Consensus 817 G~~niqf~v~~-~~~yviEiNpR~s~t 842 (1068)
T PRK12815 817 GIMNIQFVLAN-DEIYVLEVNPRASRT 842 (1068)
T ss_pred cEEEEEEEEEC-CcEEEEEEeCCCCcc
Confidence 46679999986 579999999998743
No 77
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=71.11 E-value=4.8 Score=37.46 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.2
Q ss_pred eEEeeeEEEe-CCCCeEEEEeeCCCCC
Q psy2507 7 ELYGFDILID-SDLKPWLLEVNLSPSL 32 (111)
Q Consensus 7 El~G~Df~lD-~~~kpWLLEVN~~P~l 32 (111)
..+.+||++| +++++|++|||..++-
T Consensus 280 G~~~vef~~~~~~g~~~viEiNPR~~~ 306 (1066)
T PRK05294 280 GGCNVQFALNPKDGRYIVIEMNPRVSR 306 (1066)
T ss_pred CceEEEEEEECCCCcEEEEEeecCCCc
Confidence 4567999999 5789999999976654
No 78
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=70.12 E-value=5.8 Score=37.79 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.4
Q ss_pred EEeeeEEEeC-CCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDS-DLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~-~~kpWLLEVN~~P~l~ 33 (111)
...+||++|. ++++|+||||..++-.
T Consensus 269 ~~~VEfild~~~g~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 269 AGTVEFIYDEARDEFYFLEVNTRLQVE 295 (1201)
T ss_pred eEEEEEEEECCCCCEEEEEEECCcCcc
Confidence 4568999996 4889999999999644
No 79
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=69.72 E-value=4.3 Score=33.09 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.4
Q ss_pred eeeEEEeCCCCeEEEEeeCCCC
Q psy2507 10 GFDILIDSDLKPWLLEVNLSPS 31 (111)
Q Consensus 10 G~Df~lD~~~kpWLLEVN~~P~ 31 (111)
-+||++..+.+.|+||+|.--+
T Consensus 197 rFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 197 RFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred EEEEEEEcCCEEEEEEEeeecC
Confidence 3899999999999999998655
No 80
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=68.74 E-value=11 Score=32.86 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=41.1
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCC-CCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLS-PSLGCDTPLDTRLKSAMLADTLTLVGIPALD 60 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~-P~l~~~~~~~~~l~~~~l~d~l~lv~~~~~d 60 (111)
..++.|+|++-+.+|+.|+||=|+. ||=....--+.+...+++-|++.-.....++
T Consensus 144 y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvsY~LenR~~~~r~~Pely~~~~vr~v~ 200 (488)
T COG2308 144 YLHVCGTDLIRDPDGNFQVLEDNLRAPSGVSYALENRRAMARAFPELYEELRVRPVA 200 (488)
T ss_pred EEEEeeeheeECCCCCEEEecccCcCCCchhHHHHhHHHHHHHChHHHhhcCCcccc
Confidence 4578899999999999999999995 7655554555666666666666665544443
No 81
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=68.58 E-value=6.8 Score=27.82 Aligned_cols=26 Identities=27% Similarity=0.095 Sum_probs=21.9
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
..|.+||-+.++|+..|+|+|.-=+.
T Consensus 93 ~~~vlDvg~~~~G~~~lVE~N~~~~s 118 (130)
T PF14243_consen 93 PAYVLDVGVTDDGGWALVEANDGWSS 118 (130)
T ss_pred CeEEEEEEEeCCCCEEEEEecCcccc
Confidence 45789999999999999999985444
No 82
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=65.68 E-value=7.3 Score=32.73 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.0
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLS 29 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~ 29 (111)
..-|.+|+++++++++|++|||..
T Consensus 295 iGpf~lQ~iv~~d~~~~V~EInpR 318 (366)
T PRK13277 295 IGPFTLQTIVTPDLDFVVYDVAPR 318 (366)
T ss_pred ccceEEEEEEcCCCcEEEEEEcCC
Confidence 345678999999999999999854
No 83
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=64.44 E-value=6.4 Score=35.29 Aligned_cols=43 Identities=14% Similarity=0.334 Sum_probs=31.8
Q ss_pred eeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH-HHHHHHHHHhcC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK-SAMLADTLTLVG 55 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~-~~~l~d~l~lv~ 55 (111)
+-|++|.++.-|+||+||.=. ...|+++.+- -.+++..|++..
T Consensus 274 VEFivd~~~~f~FlEMNTRLQ--VEHPVTE~iTGiDLVewqiRVA~ 317 (645)
T COG4770 274 VEFIVDADGNFYFLEMNTRLQ--VEHPVTELITGIDLVEWQIRVAS 317 (645)
T ss_pred EEEEEcCCCcEEEEEeeccee--ccccchhhhhhhHHHHHHHHHhc
Confidence 679999999999999999755 4455555432 356777777774
No 84
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=64.15 E-value=7.6 Score=32.91 Aligned_cols=27 Identities=44% Similarity=0.586 Sum_probs=22.6
Q ss_pred eeEEe-eeEEEeCCCCeEEEEeeCC-CCC
Q psy2507 6 YELYG-FDILIDSDLKPWLLEVNLS-PSL 32 (111)
Q Consensus 6 FEl~G-~Df~lD~~~kpWLLEVN~~-P~l 32 (111)
-.||| +||..|.+|++=|+|.|+- |..
T Consensus 96 ~sLygRfDl~~dg~g~iKLlEyNADTPTs 124 (387)
T COG0754 96 PSLYGRFDLAYDGDGPIKLLEYNADTPTS 124 (387)
T ss_pred cceeeeeEEEecCCCCeEEEEecCCCchH
Confidence 45788 9999999999999999984 443
No 85
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=62.37 E-value=11 Score=35.31 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.2
Q ss_pred EEeeeEEEeC-CCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDS-DLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~-~~kpWLLEVN~~P~l~ 33 (111)
...+||++|. ++++|++|||..++-+
T Consensus 279 ~~~Vef~l~~~~g~~~viEiNPR~~~s 305 (1050)
T TIGR01369 279 GCNVQFALNPDSGRYYVIEVNPRVSRS 305 (1050)
T ss_pred eeEEEEEEECCCCcEEEEEeecCcCcc
Confidence 3579999996 4899999999877643
No 86
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=56.79 E-value=12 Score=29.84 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=15.3
Q ss_pred eEEeeeEEEeCCCCeEEEEeeC-CCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNL-SPS 31 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~-~P~ 31 (111)
..-|+|++ ..|++|||. +|.
T Consensus 267 ~~agVDii-----g~~v~EvN~~~p~ 287 (312)
T TIGR01380 267 LFVGIDVI-----GGYLTEVNVTSPT 287 (312)
T ss_pred cEEEEEEe-----CCEEEEEecCCcc
Confidence 46789998 258999996 563
No 87
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=55.95 E-value=22 Score=30.60 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=29.6
Q ss_pred eeEEEeCCCCeEEEEeeCCCCCCCCChhhHH-HHHHHHHHHHHhcC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPSLGCDTPLDTR-LKSAMLADTLTLVG 55 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~-l~~~~l~d~l~lv~ 55 (111)
+.|++|.++++++||+|+.=+-... +++. .=-.++...++++.
T Consensus 274 vEfl~~~~~~~yfiEmN~Rlqveh~--vte~vtGiDlv~~qi~ia~ 317 (449)
T COG0439 274 VEFLYDSNGEFYFIEMNTRLQVEHP--VTEMVTGIDLVKEQIRIAA 317 (449)
T ss_pred EEEEEeCCCCEEEEEEecccccCcc--ceehhhhhhHHHHHHHHHc
Confidence 6899999999999999987554433 3322 33456666666663
No 88
>PF13020 DUF3883: Domain of unknown function (DUF3883)
Probab=50.67 E-value=16 Score=23.82 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.5
Q ss_pred EeeeEEEeC-CCCeEEEEeeCCC
Q psy2507 9 YGFDILIDS-DLKPWLLEVNLSP 30 (111)
Q Consensus 9 ~G~Df~lD~-~~kpWLLEVN~~P 30 (111)
.|+||.+.. ++...+|||=+.-
T Consensus 29 ~gyDi~~~~~~g~~~~IEVKst~ 51 (91)
T PF13020_consen 29 LGYDIKSFDEDGEERFIEVKSTT 51 (91)
T ss_pred CCeEEEEEeCCCCEEEEEEEEEe
Confidence 599999988 8999999998765
No 89
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=47.97 E-value=21 Score=28.43 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=25.9
Q ss_pred eeEEEeCCC-CeEEEEeeC------CCCCCCCChhhHHHH
Q psy2507 11 FDILIDSDL-KPWLLEVNL------SPSLGCDTPLDTRLK 43 (111)
Q Consensus 11 ~Df~lD~~~-kpWLLEVN~------~P~l~~~~~~~~~l~ 43 (111)
+||+++++. ..|++||=+ ..++.++++.....|
T Consensus 116 iDfll~~~~~~~~~vEVK~vtL~~~~~a~FPDApT~RG~K 155 (235)
T COG1489 116 IDFLLDDDERPDCYVEVKSVTLVENGVAMFPDAPTARGQK 155 (235)
T ss_pred EEEEEcCCCCCceEEEEeeEEEeeCCEEECCCCcchhhHH
Confidence 899999987 899999977 467777776655443
No 90
>KOG3895|consensus
Probab=47.75 E-value=22 Score=30.57 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=39.2
Q ss_pred cceeEEe------eeEEEeCCCCeEEEEeeC--CCCCCCCChhhHHHHHHHHHHHHHhc
Q psy2507 4 EKYELYG------FDILIDSDLKPWLLEVNL--SPSLGCDTPLDTRLKSAMLADTLTLV 54 (111)
Q Consensus 4 ~~FEl~G------~Df~lD~~~kpWLLEVN~--~P~l~~~~~~~~~l~~~~l~d~l~lv 54 (111)
.|-|+|| +|.+...+|+=+++|||. -|-+.....-++++...++...+.-.
T Consensus 335 tcse~fGgldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq~ 393 (488)
T KOG3895|consen 335 TCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQL 393 (488)
T ss_pred HHHHhcCCcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhhc
Confidence 3556665 788889999999999997 37666777778888888877766544
No 91
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=47.56 E-value=23 Score=17.89 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=10.2
Q ss_pred eeEEEeCCCCeEE
Q psy2507 11 FDILIDSDLKPWL 23 (111)
Q Consensus 11 ~Df~lD~~~kpWL 23 (111)
.++..|.+++.|+
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 3678899999997
No 92
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=46.68 E-value=21 Score=28.93 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=19.5
Q ss_pred EeeeEEEeCC-CCeEEEEeeCCCC
Q psy2507 9 YGFDILIDSD-LKPWLLEVNLSPS 31 (111)
Q Consensus 9 ~G~Df~lD~~-~kpWLLEVN~~P~ 31 (111)
|=+|+-++.+ .++||||+|.--.
T Consensus 217 ~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 217 YVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred EEEEEEEcCCCCeEEEEEecCCcc
Confidence 4589999999 8999999997554
No 93
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=43.89 E-value=24 Score=30.09 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.2
Q ss_pred eeEEEeCC-CCeEEEEeeCCCCCCC
Q psy2507 11 FDILIDSD-LKPWLLEVNLSPSLGC 34 (111)
Q Consensus 11 ~Df~lD~~-~kpWLLEVN~~P~l~~ 34 (111)
++|.+|.+ ++.|+||||..+|-+.
T Consensus 270 iQ~av~~~~~~~~viEvNpRvSrss 294 (400)
T COG0458 270 IQFAVDPGGGELYVIEINPRVSRSS 294 (400)
T ss_pred eeEEEcCCCceEEEEEecCCcCcch
Confidence 68999987 5999999998888653
No 94
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=42.97 E-value=26 Score=31.37 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.2
Q ss_pred eeEEe-eeEEEeCCCCeEEEEeeC-CCCC
Q psy2507 6 YELYG-FDILIDSDLKPWLLEVNL-SPSL 32 (111)
Q Consensus 6 FEl~G-~Df~lD~~~kpWLLEVN~-~P~l 32 (111)
..++| +||.+|++ .+.|+|.|+ +|+.
T Consensus 311 ~slyGRfDf~~dg~-~~KllEyNADTPT~ 338 (619)
T PRK10507 311 HMITGRMDFCMDER-GLKVYEYNADSASC 338 (619)
T ss_pred CceEEEEEEEEcCC-ceEEEEEcCCcchH
Confidence 34777 99999987 699999998 4554
No 95
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=41.66 E-value=26 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=22.3
Q ss_pred eeEEEeCCCCeEEEEeeCC------CCCCCCChhhHH
Q psy2507 11 FDILIDSDLKPWLLEVNLS------PSLGCDTPLDTR 41 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~------P~l~~~~~~~~~ 41 (111)
+||+++.++..+++||=+- =++.++.+....
T Consensus 106 ~Dfll~~~~~~~~vEVKsvtL~~~~~a~FPDApT~RG 142 (215)
T PF03749_consen 106 FDFLLEDNGGKCYVEVKSVTLVEDGIAMFPDAPTERG 142 (215)
T ss_pred EEEEEEcCCCCEEEEEeeeEeccCCcccCCCccchHH
Confidence 8999999988999999654 234455554443
No 96
>KOG2983|consensus
Probab=41.29 E-value=28 Score=28.78 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=18.8
Q ss_pred EeeeEEEeCCCCeEEEEeeCCCC
Q psy2507 9 YGFDILIDSDLKPWLLEVNLSPS 31 (111)
Q Consensus 9 ~G~Df~lD~~~kpWLLEVN~~P~ 31 (111)
|-+|+-++..+|+|||.+|.--+
T Consensus 231 fvfDVYi~k~~kv~lID~Npf~~ 253 (334)
T KOG2983|consen 231 FVFDVYITKERKVWLIDFNPFCG 253 (334)
T ss_pred eeEEEEecCCCcEEEEeccCccC
Confidence 45788888889999999997544
No 97
>KOG0369|consensus
Probab=38.09 E-value=30 Score=32.32 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.9
Q ss_pred eeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
+.|++|+.|+-|+||||..=..+
T Consensus 306 vEFLvD~~g~hYFIEvN~RlQVE 328 (1176)
T KOG0369|consen 306 VEFLVDQKGRHYFIEVNPRLQVE 328 (1176)
T ss_pred eEEEEccCCCEEEEEecCceeee
Confidence 68999999999999999775554
No 98
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.06 E-value=30 Score=25.82 Aligned_cols=19 Identities=21% Similarity=0.594 Sum_probs=14.8
Q ss_pred eeEE-EeCCCCeEEEEeeCC
Q psy2507 11 FDIL-IDSDLKPWLLEVNLS 29 (111)
Q Consensus 11 ~Df~-lD~~~kpWLLEVN~~ 29 (111)
+|+| +..+|.+|++||-++
T Consensus 51 ADLials~kGeiwIiEiKss 70 (164)
T COG5321 51 ADLIALSPKGEIWIIEIKSS 70 (164)
T ss_pred cceeeecCCCcEEEEEeecc
Confidence 3444 577899999999876
No 99
>KOG0238|consensus
Probab=35.51 E-value=35 Score=30.67 Aligned_cols=43 Identities=12% Similarity=0.334 Sum_probs=32.2
Q ss_pred eeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH-HHHHHHHHHhcC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK-SAMLADTLTLVG 55 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~-~~~l~d~l~lv~ 55 (111)
+.|++|++.+-|+||+|+.=. ...|+++.+. ..+++-.+++..
T Consensus 270 VEFi~D~~~~FyFmEmNTRLQ--VEHPvTEmItg~DLVewqiRvA~ 313 (670)
T KOG0238|consen 270 VEFIVDSKDNFYFMEMNTRLQ--VEHPVTEMITGTDLVEWQIRVAA 313 (670)
T ss_pred EEEEEcCCCcEEEEEeeceee--ecccchhhccchHHHHHHHHHhc
Confidence 679999999999999999754 4455555433 467777788874
No 100
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=33.94 E-value=48 Score=28.79 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=30.9
Q ss_pred eeEEeeeEEEeCC---CCeEEEEeeC-CCCCCCCChhhHHHHHHHH
Q psy2507 6 YELYGFDILIDSD---LKPWLLEVNL-SPSLGCDTPLDTRLKSAML 47 (111)
Q Consensus 6 FEl~G~Df~lD~~---~kpWLLEVN~-~P~l~~~~~~~~~l~~~~l 47 (111)
..++--|+|+|.+ ..+..+|+|+ +=|+..-+.....+..-++
T Consensus 116 Lgl~RSDYMl~~~~~~~~~kQVE~NTIS~sfg~ls~~v~~lH~~l~ 161 (471)
T cd00228 116 LGIFRSDYMFDEKDGTKGLKQIEINTISSSFGGLSSRVTELHRYVL 161 (471)
T ss_pred EeeeehhcccCCccCCCceeEEEEeeeeeccchHHHHHHHHHHHHH
Confidence 4577789999987 5789999999 5566666666666666554
No 101
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=31.25 E-value=46 Score=25.01 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=12.3
Q ss_pred eeEE-EeCCCCeEEEEeeCC
Q psy2507 11 FDIL-IDSDLKPWLLEVNLS 29 (111)
Q Consensus 11 ~Df~-lD~~~kpWLLEVN~~ 29 (111)
+|+| ++.+|.+|++||-++
T Consensus 51 aDv~al~~kGeI~ivEIKSs 70 (157)
T PF06319_consen 51 ADVMALGPKGEIWIVEIKSS 70 (157)
T ss_dssp EEEEEE-TT--EEEEEE-SS
T ss_pred EEEEEECCCCeEEEEEEEcC
Confidence 6766 678899999999876
No 102
>TIGR00372 cas4 CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.
Probab=30.49 E-value=1.6e+02 Score=20.69 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.3
Q ss_pred eeEEe-eeEEEeCCCCeEEEEeeCCCCC
Q psy2507 6 YELYG-FDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 6 FEl~G-~Df~lD~~~kpWLLEVN~~P~l 32 (111)
+.+.| +|++...++.+.++|+-+.-..
T Consensus 65 ~~l~G~iD~i~~~~~~~~ive~Ktg~~~ 92 (178)
T TIGR00372 65 LGLKGVIDVVLEADGELVPVEVKSGKPK 92 (178)
T ss_pred CCcEEEEEEEEEECCeEEEEEEecCCCC
Confidence 56788 8999988889999999987444
No 103
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=30.36 E-value=45 Score=31.66 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.4
Q ss_pred eeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
+.|++|++++-|+||||-.=..+
T Consensus 280 vEFLvd~~~~fyFIEvNPRiQVE 302 (1149)
T COG1038 280 VEFLVDEDGKFYFIEVNPRIQVE 302 (1149)
T ss_pred EEEEEcCCCcEEEEEecCceeeE
Confidence 67999999999999999665544
No 104
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=28.72 E-value=72 Score=27.57 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=28.4
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhc
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLV 54 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv 54 (111)
++=.-+|++.+| |.+||.|..=+=-.+..+...++..+++-++..+
T Consensus 268 vLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~ 313 (428)
T COG0151 268 VLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLESDLVELLLAAV 313 (428)
T ss_pred EEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhccccHHHHHHHHH
Confidence 344678999999 9999999873322233344445555554444444
No 105
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.31 E-value=79 Score=16.23 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.5
Q ss_pred eEEEeCCCCeEEEEeeC
Q psy2507 12 DILIDSDLKPWLLEVNL 28 (111)
Q Consensus 12 Df~lD~~~kpWLLEVN~ 28 (111)
++.+|.+|++|+-|-+.
T Consensus 6 gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEETTSEEEEEECCC
T ss_pred EEEEeCCCCEEEEECCC
Confidence 56778999999998654
No 106
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=26.73 E-value=1.3e+02 Score=22.23 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=22.1
Q ss_pred ceeEEeeeEEEeCCCC-eEEEEeeCCCC
Q psy2507 5 KYELYGFDILIDSDLK-PWLLEVNLSPS 31 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~k-pWLLEVN~~P~ 31 (111)
...+|++.|.++++|+ +|+=|+--.|-
T Consensus 135 ~vGv~~VE~Fv~~~g~~v~vNEiaPRpH 162 (172)
T PF02222_consen 135 YVGVLAVEFFVTKDGDEVLVNEIAPRPH 162 (172)
T ss_dssp SSEEEEEEEEEETTSTEEEEEEEESS--
T ss_pred cEEEEEEEEEEecCCCEEEEEeccCCcc
Confidence 4578999999999998 99999987764
No 107
>PHA02762 hypothetical protein; Provisional
Probab=26.43 E-value=77 Score=20.06 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.6
Q ss_pred eEEEeCCCCeEEEEeeCCCCCC
Q psy2507 12 DILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 12 Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
-+.+|.++--.++|+|.+|--+
T Consensus 2 ki~idn~fgnlii~~~rs~~ks 23 (62)
T PHA02762 2 KILIDNDFGNLIIEFKRNVEKS 23 (62)
T ss_pred eEEecCCCccEEEEEecCcccc
Confidence 3678999999999999998754
No 108
>PHA00691 hypothetical protein
Probab=26.29 E-value=42 Score=21.54 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=8.8
Q ss_pred eCCCCeEEEE
Q psy2507 16 DSDLKPWLLE 25 (111)
Q Consensus 16 D~~~kpWLLE 25 (111)
-++|+.|+||
T Consensus 10 ~ENGr~WVL~ 19 (68)
T PHA00691 10 YENGRVWVLK 19 (68)
T ss_pred ccCCeEEEEE
Confidence 3789999999
No 109
>PF13222 DUF4030: Protein of unknown function (DUF4030)
Probab=24.13 E-value=2.6e+02 Score=20.71 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=36.9
Q ss_pred CCcceeEEeeeEEEeCCCCeEEEEeeCCCCC-CCCChhhHHHHHHHHHHHHHh
Q psy2507 2 LSEKYELYGFDILIDSDLKPWLLEVNLSPSL-GCDTPLDTRLKSAMLADTLTL 53 (111)
Q Consensus 2 ~~~~FEl~G~Df~lD~~~kpWLLEVN~~P~l-~~~~~~~~~l~~~~l~d~l~l 53 (111)
.++-|+.+|+-=+-.+.++|+.+-+++.=+. .+.+.-..+-..+.+.+.|+.
T Consensus 67 ~Kn~Y~~~gI~~~n~k~~qp~~v~I~t~in~~d~~AKE~g~kiEkei~~~lkt 119 (142)
T PF13222_consen 67 GKNGYKGFGIQQINVKSSQPVTVTIKTKINSSDPGAKEFGKKIEKEINEVLKT 119 (142)
T ss_pred hccCccccceeEeeecCCCcEEEEEeccccccccchHHHHHHHHHHHHHHHcc
Confidence 4688999999989999999999999984333 233333444556667776654
No 110
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=21.81 E-value=2.1e+02 Score=17.77 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=30.2
Q ss_pred eeEEEeCCCCeEEEEeeCCCCCCCCChh---hHHHHHHHHHHHHHhcC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPSLGCDTPL---DTRLKSAMLADTLTLVG 55 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~l~~~~~~---~~~l~~~~l~d~l~lv~ 55 (111)
+....|++-.+|.-+..--|+|-...+. ..+..+.|+.++|.+=+
T Consensus 3 I~a~wD~EA~VWvA~s~dvpGLvtEA~Tle~L~~kl~~~ipeLLelN~ 50 (54)
T PF08972_consen 3 IRAFWDEEAGVWVATSDDVPGLVTEADTLEELIEKLRVMIPELLELNG 50 (54)
T ss_dssp EEEEEETTTTEEEEE-SSSTT---EESSHHHHHHHHHHHHHHHHHHS-
T ss_pred EEEEEcCCCCEEEEecCCCccceecCccHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999765444 34455677888877653
Done!