Query psy2507
Match_columns 111
No_of_seqs 176 out of 1138
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:59:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 99.6 5.4E-15 1.9E-19 120.8 7.6 57 3-69 312-368 (380)
2 4fu0_A D-alanine--D-alanine li 98.4 9.5E-07 3.2E-11 69.4 7.8 50 5-54 292-347 (357)
3 4eg0_A D-alanine--D-alanine li 98.1 1.1E-05 3.9E-10 61.7 7.4 50 5-54 259-314 (317)
4 3i12_A D-alanine-D-alanine lig 98.0 1.6E-05 5.5E-10 62.6 7.7 36 5-40 295-330 (364)
5 3tqt_A D-alanine--D-alanine li 98.0 1.8E-05 6E-10 63.2 7.7 36 5-40 296-331 (372)
6 3k3p_A D-alanine--D-alanine li 97.9 2.3E-05 8E-10 62.8 7.5 36 5-40 316-351 (383)
7 3se7_A VANA; alpha-beta struct 97.9 2.7E-05 9.3E-10 60.6 7.6 49 6-54 286-340 (346)
8 3e5n_A D-alanine-D-alanine lig 97.9 2.7E-05 9.1E-10 62.3 7.4 50 5-54 314-369 (386)
9 1e4e_A Vancomycin/teicoplanin 97.9 4.3E-05 1.5E-09 59.2 7.7 35 5-39 285-319 (343)
10 2i87_A D-alanine-D-alanine lig 97.8 6.2E-05 2.1E-09 58.8 7.6 33 6-38 287-319 (364)
11 2q7d_A Inositol-tetrakisphosph 97.8 5.2E-05 1.8E-09 60.3 6.7 33 7-39 287-320 (346)
12 1z2n_X Inositol 1,3,4-trisphos 97.8 3.1E-05 1.1E-09 58.8 5.1 33 7-39 275-308 (324)
13 1iow_A DD-ligase, DDLB, D-ALA\ 97.7 9.8E-05 3.3E-09 55.1 7.4 33 6-38 251-283 (306)
14 2fb9_A D-alanine:D-alanine lig 97.7 8.5E-05 2.9E-09 57.3 6.8 33 6-39 267-299 (322)
15 1ehi_A LMDDL2, D-alanine:D-lac 97.6 0.00018 6.3E-09 56.8 7.7 31 6-36 297-327 (377)
16 3r5x_A D-alanine--D-alanine li 97.6 0.00016 5.6E-09 54.3 6.8 32 7-39 246-277 (307)
17 3lwb_A D-alanine--D-alanine li 97.6 0.00013 4.4E-09 57.9 6.3 35 5-40 311-345 (373)
18 2pvp_A D-alanine-D-alanine lig 97.2 0.00021 7E-09 56.7 3.2 46 5-53 301-346 (367)
19 2r85_A PURP protein PF1517; AT 97.2 0.00038 1.3E-08 52.5 4.4 30 4-33 262-291 (334)
20 1uc8_A LYSX, lysine biosynthes 97.0 0.0006 2E-08 49.9 4.0 27 7-34 232-258 (280)
21 1i7n_A Synapsin II; synapse, p 96.9 0.002 6.8E-08 50.8 6.7 42 6-47 256-299 (309)
22 3ax6_A Phosphoribosylaminoimid 96.7 0.0018 6.1E-08 50.3 4.6 29 6-34 238-266 (380)
23 1pk8_A RAT synapsin I; ATP bin 96.6 0.0041 1.4E-07 51.4 6.7 45 6-50 368-414 (422)
24 2p0a_A Synapsin-3, synapsin II 96.6 0.0035 1.2E-07 50.2 5.8 47 6-52 273-322 (344)
25 2z04_A Phosphoribosylaminoimid 96.4 0.0037 1.3E-07 48.1 4.9 30 6-35 231-260 (365)
26 3q2o_A Phosphoribosylaminoimid 96.1 0.007 2.4E-07 47.4 5.2 30 6-35 255-284 (389)
27 3vot_A L-amino acid ligase, BL 96.1 0.005 1.7E-07 48.6 4.1 28 6-33 267-294 (425)
28 3mjf_A Phosphoribosylamine--gl 95.9 0.0035 1.2E-07 50.4 2.7 49 6-54 270-318 (431)
29 3k5i_A Phosphoribosyl-aminoimi 95.9 0.008 2.7E-07 47.8 4.6 29 5-33 267-295 (403)
30 3orq_A N5-carboxyaminoimidazol 95.9 0.012 4.3E-07 46.1 5.5 29 5-33 250-278 (377)
31 3df7_A Putative ATP-grAsp supe 95.7 0.0094 3.2E-07 45.8 4.2 29 4-34 225-253 (305)
32 4e4t_A Phosphoribosylaminoimid 95.6 0.018 6E-07 46.2 5.5 28 6-33 280-307 (419)
33 2yw2_A Phosphoribosylamine--gl 95.6 0.0086 2.9E-07 47.1 3.5 27 6-33 265-291 (424)
34 2xcl_A Phosphoribosylamine--gl 95.5 0.0082 2.8E-07 47.2 3.2 28 6-34 265-292 (422)
35 1ulz_A Pyruvate carboxylase N- 95.5 0.014 4.7E-07 46.4 4.5 27 7-33 269-295 (451)
36 1vkz_A Phosphoribosylamine--gl 95.5 0.014 4.8E-07 46.2 4.4 47 7-54 268-314 (412)
37 2vpq_A Acetyl-COA carboxylase; 95.3 0.013 4.4E-07 46.6 3.8 27 7-33 269-296 (451)
38 2ip4_A PURD, phosphoribosylami 95.3 0.017 5.8E-07 45.4 4.3 27 6-33 259-285 (417)
39 1kjq_A GART 2, phosphoribosylg 95.2 0.016 5.4E-07 44.8 3.9 27 6-33 260-286 (391)
40 2yrx_A Phosphoribosylglycinami 95.1 0.02 6.8E-07 45.7 4.1 27 6-33 286-312 (451)
41 3ouz_A Biotin carboxylase; str 95.0 0.021 7.3E-07 45.4 4.2 27 7-33 274-300 (446)
42 3lp8_A Phosphoribosylamine-gly 94.9 0.0099 3.4E-07 47.9 1.9 27 6-33 286-312 (442)
43 3aw8_A PURK, phosphoribosylami 94.8 0.029 1E-06 43.2 4.4 30 6-36 240-269 (369)
44 2qk4_A Trifunctional purine bi 94.8 0.022 7.5E-07 45.4 3.7 26 7-33 293-318 (452)
45 2dwc_A PH0318, 433AA long hypo 94.5 0.027 9.3E-07 44.4 3.5 27 6-33 273-299 (433)
46 4dim_A Phosphoribosylglycinami 94.2 0.036 1.2E-06 43.0 3.7 25 8-33 259-283 (403)
47 3glk_A Acetyl-COA carboxylase 94.1 0.05 1.7E-06 45.5 4.6 32 7-40 342-373 (540)
48 1w96_A ACC, acetyl-coenzyme A 93.7 0.058 2E-06 44.6 4.2 27 7-33 348-375 (554)
49 3jrx_A Acetyl-COA carboxylase 93.4 0.075 2.6E-06 45.1 4.4 32 7-40 358-389 (587)
50 2w70_A Biotin carboxylase; lig 93.3 0.063 2.2E-06 42.5 3.6 26 7-33 271-296 (449)
51 3eth_A Phosphoribosylaminoimid 93.2 0.11 3.9E-06 41.0 5.0 29 5-34 219-247 (355)
52 2pn1_A Carbamoylphosphate synt 93.1 0.069 2.4E-06 40.1 3.4 25 6-31 249-273 (331)
53 2dzd_A Pyruvate carboxylase; b 92.0 0.12 4.1E-06 41.1 3.7 24 8-32 276-299 (461)
54 3vmm_A Alanine-anticapsin liga 91.5 0.088 3E-06 43.0 2.4 21 11-31 312-332 (474)
55 4ffl_A PYLC; amino acid, biosy 91.3 0.2 6.7E-06 38.4 4.1 26 6-32 221-247 (363)
56 3ln6_A Glutathione biosynthesi 91.2 0.12 4.2E-06 44.9 3.2 28 6-33 690-725 (750)
57 3n6r_A Propionyl-COA carboxyla 91.1 0.1 3.5E-06 44.8 2.4 46 7-54 270-316 (681)
58 3ln7_A Glutathione biosynthesi 90.6 0.16 5.4E-06 44.5 3.3 28 6-33 696-731 (757)
59 3u9t_A MCC alpha, methylcroton 90.1 0.081 2.8E-06 45.3 0.9 27 7-33 296-322 (675)
60 1gsa_A Glutathione synthetase; 89.1 0.25 8.4E-06 36.3 2.9 22 7-33 268-291 (316)
61 1a9x_A Carbamoyl phosphate syn 88.7 0.38 1.3E-05 43.1 4.3 25 7-32 824-848 (1073)
62 2qf7_A Pyruvate carboxylase pr 88.4 0.34 1.2E-05 44.1 3.8 27 7-33 289-316 (1165)
63 3t7a_A Inositol pyrophosphate 86.6 1.5 5.1E-05 35.2 6.2 42 7-50 268-309 (330)
64 1a9x_A Carbamoyl phosphate syn 86.0 0.69 2.4E-05 41.4 4.3 25 7-31 280-305 (1073)
65 3hbl_A Pyruvate carboxylase; T 82.1 1.1 3.8E-05 40.8 4.0 25 8-33 274-298 (1150)
66 3va7_A KLLA0E08119P; carboxyla 81.6 1.1 3.7E-05 41.2 3.8 46 7-54 298-345 (1236)
67 2r7k_A 5-formaminoimidazole-4- 81.0 1.6 5.6E-05 34.5 4.2 29 4-32 289-317 (361)
68 3n6x_A Putative glutathionylsp 79.7 2 7E-05 35.7 4.5 51 6-56 142-193 (474)
69 4e9m_A Nucleotide-binding olig 66.2 0.24 8.2E-06 35.6 -3.7 17 18-34 105-121 (144)
70 2pbz_A Hypothetical protein; N 57.4 8.4 0.00029 30.0 3.4 27 4-32 245-271 (320)
71 3kal_A Homoglutathione synthet 43.4 23 0.0008 29.7 4.1 43 6-48 149-193 (499)
72 2vob_A Trypanothione synthetas 31.5 32 0.0011 29.6 3.1 24 8-31 325-351 (652)
73 4gqc_A Thiol peroxidase, perox 31.4 64 0.0022 21.5 4.2 23 12-34 124-146 (164)
74 2io8_A Bifunctional glutathion 30.9 27 0.00093 29.8 2.6 21 8-29 313-334 (619)
75 4g2e_A Peroxiredoxin; redox pr 26.1 77 0.0026 20.8 3.8 23 12-34 122-144 (157)
76 3dnx_A Uncharacterized protein 21.8 64 0.0022 23.1 2.8 19 11-29 43-62 (153)
77 2ja9_A Exosome complex exonucl 21.0 36 0.0012 24.3 1.3 14 9-22 121-134 (175)
78 2wyo_A Glutathione synthetase; 20.3 2.3E+02 0.008 24.1 6.3 44 5-48 121-174 (562)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=99.56 E-value=5.4e-15 Score=120.84 Aligned_cols=57 Identities=28% Similarity=0.627 Sum_probs=50.4
Q ss_pred CcceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcCCCCCCC
Q psy2507 3 SEKYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLVGIPALDPMLRHNSTK 69 (111)
Q Consensus 3 ~~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv~~~~~d~~~~~~~~~ 69 (111)
.+|||+||+|||+|++++|||||||++|++.. .+.++|++++++++ +||.|+++...
T Consensus 312 ~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~ia----vdp~f~~~~~~ 368 (380)
T 3tig_A 312 YHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLA----ISSVFPLNEEN 368 (380)
T ss_dssp SEECEEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHT----TTTTSCCCC--
T ss_pred CceEEEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHh----cccccCCcccc
Confidence 47999999999999999999999999999974 38899999999999 89998876543
No 2
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.38 E-value=9.5e-07 Score=69.39 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=41.4
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH------HHHHHHHHHhc
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK------SAMLADTLTLV 54 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~------~~~l~d~l~lv 54 (111)
|-.+.++||++|+++++|++|||+.|+|+..+.++...+ ++++..++++.
T Consensus 292 ~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a 347 (357)
T 4fu0_A 292 CSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLY 347 (357)
T ss_dssp CCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 445778999999999999999999999999887765543 57778777777
No 3
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.05 E-value=1.1e-05 Score=61.70 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=37.7
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHH------HHHHHHHHHHhc
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRL------KSAMLADTLTLV 54 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l------~~~~l~d~l~lv 54 (111)
|..+.++||++|+++++|+||||+.|+++..+.+.... ..+++..+++..
T Consensus 259 ~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li~~a 314 (317)
T 4eg0_A 259 CTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVLSLT 314 (317)
T ss_dssp CCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred CCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33577899999999999999999999999887765432 245555555543
No 4
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.01 E-value=1.6e-05 Score=62.59 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=31.1
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
|..+.++||++|+++++|++|||+.|+++..+.+..
T Consensus 295 ~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~p~ 330 (364)
T 3i12_A 295 CAGMARVDVFLTADNEVVINEINTLPGFTNISMYPK 330 (364)
T ss_dssp CCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHH
T ss_pred CceEEEEEEEEecCCCEEEEEeeCCCCCCCCCHHHH
Confidence 446778999999999999999999999998876554
No 5
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.99 E-value=1.8e-05 Score=63.22 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=31.2
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
|-.+.++||++|+++++|++|||+.|+|+..+-++.
T Consensus 296 ~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~p~ 331 (372)
T 3tqt_A 296 CSGMARVDFFVTPNNKVLVNEINTIPGFTNISMYPK 331 (372)
T ss_dssp CCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHH
T ss_pred CccEEEEEEEEeCCCcEEEEEEECCCCcCccCHHHH
Confidence 445778999999999999999999999998876644
No 6
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.93 E-value=2.3e-05 Score=62.82 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=29.3
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
|-.+.++||++|+++++|++|||+.|+|+..+.+..
T Consensus 316 ~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~p~ 351 (383)
T 3k3p_A 316 CCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMYPL 351 (383)
T ss_dssp CCEEEEEEEEECTTCCEEEEEEESSCCCC--CHHHH
T ss_pred CceEEEEEEEEECCCCEEEEEeeCCCCCCcccHHHH
Confidence 335778999999999999999999999998876654
No 7
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=97.93 E-value=2.7e-05 Score=60.56 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=36.4
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH------HHHHHHHHHhc
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK------SAMLADTLTLV 54 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~------~~~l~d~l~lv 54 (111)
-.+.++||++|+++++|+||||+.|+++..+.+..... .+++..+++..
T Consensus 286 ~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~li~~a 340 (346)
T 3se7_A 286 RGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRLVSLA 340 (346)
T ss_dssp CEEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 36788999999999999999999999988776543221 34555555444
No 8
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.91 E-value=2.7e-05 Score=62.28 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=37.1
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHH------HHHHHHHHHHhc
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRL------KSAMLADTLTLV 54 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l------~~~~l~d~l~lv 54 (111)
|-.+.++||++|+++++|++|||+.|+|+..+.++... ..+++..+++..
T Consensus 314 ~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a 369 (386)
T 3e5n_A 314 CAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 369 (386)
T ss_dssp CCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CccEEEEEEEEECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33577899999999999999999999999887665432 244444444444
No 9
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.87 E-value=4.3e-05 Score=59.15 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=30.0
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhh
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLD 39 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~ 39 (111)
+..+.++||++|+++++|+||||+.|+++..+.+.
T Consensus 285 ~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~~p 319 (343)
T 1e4e_A 285 CRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYP 319 (343)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHH
T ss_pred CceEEEEEEEEeCCCCEEEEEeeCCCCCCcccHHH
Confidence 44678999999999999999999999998776443
No 10
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=97.79 E-value=6.2e-05 Score=58.80 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChh
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPL 38 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~ 38 (111)
-.+.++||++|+++++|+||||+.|+++..+.+
T Consensus 287 ~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~~ 319 (364)
T 2i87_A 287 SGLVRADFFVTEDNQIYINETNAMPGFTAFSMY 319 (364)
T ss_dssp CEEEEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred CcEEEEEEEEecCCCEEEEEEeCCCCCCchhHH
Confidence 367899999999999999999999999876643
No 11
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.76 E-value=5.2e-05 Score=60.25 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=28.9
Q ss_pred eEEeeeEEEeC-CCCeEEEEeeCCCCCCCCChhh
Q psy2507 7 ELYGFDILIDS-DLKPWLLEVNLSPSLGCDTPLD 39 (111)
Q Consensus 7 El~G~Df~lD~-~~kpWLLEVN~~P~l~~~~~~~ 39 (111)
.++|+|++.|+ ++++|+||||+.|++.....+.
T Consensus 287 ~~~gvDii~~~~~g~~~VlEVN~~PG~~g~~~~~ 320 (346)
T 2q7d_A 287 SLFGIDIIINNQTGQHAVIDINAFPGYEGVSEFF 320 (346)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEESCCCTTCTTHH
T ss_pred ceEeeEEEeecCCCCEEEEEEeCCccccccchHH
Confidence 47899999997 7899999999999999876654
No 12
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=97.75 E-value=3.1e-05 Score=58.81 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=28.4
Q ss_pred eEEeeeEEEe-CCCCeEEEEeeCCCCCCCCChhh
Q psy2507 7 ELYGFDILID-SDLKPWLLEVNLSPSLGCDTPLD 39 (111)
Q Consensus 7 El~G~Df~lD-~~~kpWLLEVN~~P~l~~~~~~~ 39 (111)
.+.|+||++| ++|++|+||||+.|++.....++
T Consensus 275 ~~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 275 QLCGIDFIKENEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp SEEEEEEECGGGCSSCEEEEEEESCCTTSCBCHH
T ss_pred cEEeeEEEEEcCCCCEEEEEEcCCCCcCCCCCHH
Confidence 3679999999 56999999999999998776655
No 13
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.73 E-value=9.8e-05 Score=55.08 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=28.7
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChh
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPL 38 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~ 38 (111)
...+|+||++|++|++|+||||..|+....+.+
T Consensus 251 ~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s~~ 283 (306)
T 1iow_A 251 KGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLV 283 (306)
T ss_dssp CSEEEEEEEECTTSCEEEEEEESSCCCSTTCHH
T ss_pred ceEEEEEEEEcCCCCEEEEEecCCCCCCCCCHH
Confidence 457899999999999999999999999876543
No 14
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.69 E-value=8.5e-05 Score=57.33 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.5
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhh
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLD 39 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~ 39 (111)
..+.++||++| ++++|++|||+.|+++..+-+.
T Consensus 267 ~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s~~p 299 (322)
T 2fb9_A 267 RGMARVDFFLA-EGELYLNELNTIPGFTPTSMYP 299 (322)
T ss_dssp CSEEEEEEEEE-TTEEEEEEEESSCCCSSSCHHH
T ss_pred ceEEEEEEEEE-CCcEEEEEEECCCCCCcccHHH
Confidence 36789999999 9999999999999998776443
No 15
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=97.61 E-value=0.00018 Score=56.77 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=27.5
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDT 36 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~ 36 (111)
-.+.++||++|+++++|+||||+.|+++..+
T Consensus 297 ~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 297 RGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp CEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred CcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 3578899999999999999999999988665
No 16
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=97.58 E-value=0.00016 Score=54.35 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.7
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhh
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLD 39 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~ 39 (111)
.+.++||++| ++++|+||||+.|+++..+.+.
T Consensus 246 G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s~~~ 277 (307)
T 3r5x_A 246 VYARVDMMVK-DGIPYVMEVNTLPGMTQASLLP 277 (307)
T ss_dssp SEEEEEEEEE-TTEEEEEEEESSCCCSTTSHHH
T ss_pred ceEEEEEEEE-CCeEEEEEEcCCCCCCccCHHH
Confidence 4778999999 5999999999999998876554
No 17
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.56 E-value=0.00013 Score=57.92 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=29.7
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
|-.+.++||++|++++ |++|||+.|+++..+-+..
T Consensus 311 ~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~p~ 345 (373)
T 3lwb_A 311 CRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPR 345 (373)
T ss_dssp CCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHHHH
T ss_pred CccEEEEEEEEECCCC-EEEEecCCCCCCcccHHHH
Confidence 3467889999999999 9999999999998775543
No 18
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.17 E-value=0.00021 Score=56.74 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=34.4
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHh
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTL 53 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~l 53 (111)
|..+.++||++| ++++|+||||+.|+++..+-+. -..+++..++..
T Consensus 301 ~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s~~p--~~~~l~~~li~~ 346 (367)
T 2pvp_A 301 DGAIIRCDFFVI-ENEVYLNEINPIPGSLANYLFD--DFKTTLENLAQS 346 (367)
T ss_dssp TTCCEEEEEEEE-TTEEEEEEEESSCGGGGGGGSS--SHHHHHHHHHHH
T ss_pred CCCEEEEEEEEE-CCeEEEEEEeCCCCCCcccccC--CHHHHHHHHHhC
Confidence 345778999999 8999999999999987655444 345555555555
No 19
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.16 E-value=0.00038 Score=52.48 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=27.2
Q ss_pred cceeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 4 EKYELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 4 ~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
.+...+++||++|+++++|+||||..|+..
T Consensus 262 ~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 262 GLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred cccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 567788999999999999999999999984
No 20
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=96.98 E-value=0.0006 Score=49.89 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=24.3
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
..+|+||++|+++ +|+||||..|++..
T Consensus 232 g~~~vD~~~~~~g-~~~iEiN~r~g~~~ 258 (280)
T 1uc8_A 232 GVVAVDLFESERG-LLVNEVNHTMEFKN 258 (280)
T ss_dssp SEEEEEEEEETTE-EEEEEEETTCCCTT
T ss_pred CeEEEEEEEeCCC-eEEEEEeCCCCccc
Confidence 5789999999997 99999999999764
No 21
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=96.92 E-value=0.002 Score=50.84 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=33.1
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeC--CCCCCCCChhhHHHHHHHH
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNL--SPSLGCDTPLDTRLKSAML 47 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~--~P~l~~~~~~~~~l~~~~l 47 (111)
.+++|+|++.+.+|+++++|||+ +|++......+.......+
T Consensus 256 ldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~i 299 (309)
T 1i7n_A 256 LDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLV 299 (309)
T ss_dssp CSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHHHH
Confidence 67899999999999999999999 9999865544444444433
No 22
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=96.66 E-value=0.0018 Score=50.33 Aligned_cols=29 Identities=10% Similarity=0.273 Sum_probs=26.0
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
...+++||++++++++|+||||..|+...
T Consensus 238 ~G~~~vd~~~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 238 VGIFGIEMFLTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp CEEEEEEEEEETTSCEEEEEEESSCCGGG
T ss_pred eEEEEEEEEEeCCCcEEEEEecCCCCCCc
Confidence 46789999999999999999999998754
No 23
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=96.62 E-value=0.0041 Score=51.39 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=35.0
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeC--CCCCCCCChhhHHHHHHHHHHH
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNL--SPSLGCDTPLDTRLKSAMLADT 50 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~--~P~l~~~~~~~~~l~~~~l~d~ 50 (111)
.+++|+|++.+++++++++|||. +|++......+...+...+-+-
T Consensus 368 ldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~ 414 (422)
T 1pk8_A 368 LDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNK 414 (422)
T ss_dssp CSEEEEEEEEETTSCEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhHHHHHHHHHHHH
Confidence 67899999999999999999999 9999866555555444444433
No 24
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=96.57 E-value=0.0035 Score=50.22 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=34.3
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeC--CCCCCCCChhhHHH-HHHHHHHHHH
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNL--SPSLGCDTPLDTRL-KSAMLADTLT 52 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~--~P~l~~~~~~~~~l-~~~~l~d~l~ 52 (111)
.+++|+|++.+.+|+++++|||. +|++......+... ...+++.+.+
T Consensus 273 ldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~ 322 (344)
T 2p0a_A 273 LDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQ 322 (344)
T ss_dssp CSEEEEEEEEETTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEEcCCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHH
Confidence 67899999999999999999999 99997554444443 3334444333
No 25
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=96.40 E-value=0.0037 Score=48.15 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=25.9
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCD 35 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~ 35 (111)
...+++||++|+++++|+||||..|+....
T Consensus 231 ~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~ 260 (365)
T 2z04_A 231 VGVFTVEFFLLKDGRVLINEFAPRVHNTGH 260 (365)
T ss_dssp CEEEEEEEEECTTSCEEEEEEESSCCGGGT
T ss_pred EEEEEEEEEEeCCCcEEEEEeccCcCCCce
Confidence 357899999999999999999999987433
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=96.13 E-value=0.007 Score=47.39 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=26.3
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCD 35 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~ 35 (111)
..++++||+++.++++|++|||..|+.+..
T Consensus 255 ~G~~~ve~~~~~dg~~~viEiNpR~~~s~~ 284 (389)
T 3q2o_A 255 VGTLAVEMFATADGEIYINELAPRPHNSGH 284 (389)
T ss_dssp CEEEEEEEEECTTSCEEEEEEESSCCGGGT
T ss_pred eeEEEEEEEEeCCCCEEEEEeeCCCCCchh
Confidence 457899999999999999999999987643
No 27
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=96.08 E-value=0.005 Score=48.59 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
+..+++||++|.+|++|+||||..|+-.
T Consensus 267 ~G~~~ve~~~~~dG~~~~iEiN~R~gG~ 294 (425)
T 3vot_A 267 QGPAHTELRLDKDGTPYVIEVGARIGGS 294 (425)
T ss_dssp SEEEEEEEEECTTCCEEEEEEESSCGGG
T ss_pred cceEEEEEEEEeCCcEEEEEEecCCCCC
Confidence 3567899999999999999999999754
No 28
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=95.95 E-value=0.0035 Score=50.40 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=32.6
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhc
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLV 54 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv 54 (111)
-.++++|||++++++||+||+|..|+......+...+...+++-+++++
T Consensus 270 ~G~~~ve~~~~~~g~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~ 318 (431)
T 3mjf_A 270 TGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGT 318 (431)
T ss_dssp EEEEEEEEEECTTSCEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHH
Confidence 3567799999999999999999999833322223333334444444444
No 29
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=95.90 E-value=0.008 Score=47.79 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.9
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
+..++++||++++++++|++|||..|+.+
T Consensus 267 ~~G~~~ve~~~~~dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 267 GKGVFGVEMFLLEDDSIMLCEIASRIHNS 295 (403)
T ss_dssp CSEEEEEEEEEETTSCEEEEEEESSCCGG
T ss_pred CeeEEEEEEEEeCCCcEEEEEeecCCCCC
Confidence 34678899999999999999999999975
No 30
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=95.86 E-value=0.012 Score=46.10 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=25.4
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
+..++++||+++.++++|++|||..|+-+
T Consensus 250 ~~G~~~ve~~~~~~g~~~v~EinpR~~~s 278 (377)
T 3orq_A 250 FIGTFTVEFFIDSNNQLYVNEIAPRPHNS 278 (377)
T ss_dssp CCEEEEEEEEEETTCCEEEEEEESSCCGG
T ss_pred CeEEEEEEEEEeCCCcEEEEEeeCCcCCC
Confidence 34578999999999999999999999844
No 31
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=95.74 E-value=0.0094 Score=45.76 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=24.8
Q ss_pred cceeEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 4 EKYELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 4 ~~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
++..+.|+||++| +++|++|||..|+.+.
T Consensus 225 g~~G~~~vD~~~~--~~~~viEiNpR~~~~~ 253 (305)
T 3df7_A 225 GLNGYVGVDIVYS--DQPYVIEINARLTTPV 253 (305)
T ss_dssp TCCEEEEEEEEES--SSEEEEEEESSCCGGG
T ss_pred CCcCceEEEEEEC--CCEEEEEEcCCCCCCH
Confidence 4457889999997 6899999999999864
No 32
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=95.60 E-value=0.018 Score=46.23 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=25.2
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..++++||+++.++++|++|||..|+-+
T Consensus 280 ~G~~~vE~~~~~dG~~~v~EiNpR~~~s 307 (419)
T 4e4t_A 280 VGVLCVEFFVLEDGSFVANEMAPRPHNS 307 (419)
T ss_dssp CEEEEEEEEEETTCCEEEEEEESSCCGG
T ss_pred eeEEEEEEEEeCCCCEEEEEEeCCCCCC
Confidence 4578999999999999999999999864
No 33
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=95.56 E-value=0.0086 Score=47.11 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=23.5
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+++||++|+++ +|+||||..|+-.
T Consensus 265 ~G~~~ve~~~~~~g-~~viEiN~R~g~~ 291 (424)
T 2yw2_A 265 RGFLYAGLMITKEG-PKVLEFNVRLGDP 291 (424)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred eeEEEEEEEEeCCC-cEEEEEecCCCCc
Confidence 45677999999999 9999999999844
No 34
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=95.50 E-value=0.0082 Score=47.20 Aligned_cols=28 Identities=7% Similarity=-0.058 Sum_probs=24.1
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
-..+++||++++++ +|+||||..|+...
T Consensus 265 ~G~~~vd~~~~~~g-~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 265 TGVLYAGLMLTENG-SKVIEFNARFGDPE 292 (422)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCTTT
T ss_pred EEEEEeeEEEeCCC-cEEEEEecCCCCcH
Confidence 45678899999999 99999999998543
No 35
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.49 E-value=0.014 Score=46.37 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=23.6
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+++||++|+++++|+||||..|+-.
T Consensus 269 G~~~ve~~~~~~g~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 269 NAGTMEFIADQEGNLYFIEMNTRIQVE 295 (451)
T ss_dssp EEEEEEEEECTTCCEEEEEEECSCCTT
T ss_pred cceEEEEEEeCCCCEEEEEeeCCCCcc
Confidence 456899999999999999999998743
No 36
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.48 E-value=0.014 Score=46.18 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=31.5
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHHHHhc
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADTLTLV 54 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~l~lv 54 (111)
..+++||++++++ +|+||||..|+......+....-.++.+-++.++
T Consensus 268 G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~ 314 (412)
T 1vkz_A 268 GFLYLGLMLHDGD-PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGY 314 (412)
T ss_dssp EEEEEEEEEETTE-EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCC-cEEEEEecCCCCCcceeehhhcCCCHHHHHHHHh
Confidence 6778999999999 9999999999865332222233344444444444
No 37
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=95.32 E-value=0.013 Score=46.57 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred eEEeeeEEEe-CCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILID-SDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD-~~~kpWLLEVN~~P~l~ 33 (111)
..+++||++| +++++|+||||..|+-.
T Consensus 269 G~~~ve~~~~~~~g~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 269 NAGTIEFIYDLNDNKFYFMEMNTRIQVE 296 (451)
T ss_dssp EEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred ceEEEEEEEECCCCCEEEEEeeCCCCCc
Confidence 4678999999 89999999999999754
No 38
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=95.27 E-value=0.017 Score=45.39 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.5
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
-..+++||++++++ +|+||||..|+-.
T Consensus 259 ~G~~~ve~~~~~~g-~~viEiN~R~g~~ 285 (417)
T 2ip4_A 259 RGVVYAGLMLTREG-PKVLEFNARFGDP 285 (417)
T ss_dssp CEEEEEEEEECSSC-EEEEEEESSCCTT
T ss_pred eEEEEEEEEEeCCC-eEEEEEecCCCCc
Confidence 45678999999999 9999999999843
No 39
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=95.23 E-value=0.016 Score=44.83 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.8
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+++||+++++ ++|+||||..|+-.
T Consensus 260 ~G~~~ve~~~~~~-~~~viEiN~R~~~~ 286 (391)
T 1kjq_A 260 YGLFGVELFVCGD-EVIFSEVSPRPHDT 286 (391)
T ss_dssp SEEEEEEEEEETT-EEEEEEEESSCCGG
T ss_pred eeEEEEEEEEeCC-cEEEEEEECCCCCC
Confidence 4678999999988 89999999999854
No 40
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=95.05 E-value=0.02 Score=45.74 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=23.5
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+++||++++++ +|+||||..|+-.
T Consensus 286 ~G~~~ve~~~~~~g-~~viEiN~R~g~~ 312 (451)
T 2yrx_A 286 LGVLYAGLMATANG-PKVIEFNARFGDP 312 (451)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred eeEEEEEEEEeCCC-cEEEEEecCCCCc
Confidence 45678899999999 9999999999844
No 41
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=95.00 E-value=0.021 Score=45.38 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.8
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+++||++|+++++|+||||..|+-.
T Consensus 274 G~~~ve~~~~~~g~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 274 GAGTFEFLVDKNLDFYFIEMNTRLQVE 300 (446)
T ss_dssp EEEEEEEEECTTCCEEEEEEESSCCTT
T ss_pred CceEEEEEEeCCCCEEEEEeECCCCCc
Confidence 456799999999999999999999754
No 42
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=94.85 E-value=0.0099 Score=47.94 Aligned_cols=27 Identities=30% Similarity=0.197 Sum_probs=23.4
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
-.++++||++++++ ||+||+|..|+-.
T Consensus 286 ~G~~~ve~~~~~~g-~~viEiN~R~g~~ 312 (442)
T 3lp8_A 286 RGLLFAGIIIKKNE-PKLLEYNVRFGDP 312 (442)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred eeEEEEEEEEeCCC-eEEEEEecCCCCC
Confidence 35677999999998 9999999999843
No 43
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=94.80 E-value=0.029 Score=43.22 Aligned_cols=30 Identities=3% Similarity=-0.099 Sum_probs=25.4
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLGCDT 36 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~~~~ 36 (111)
...+++||++++ +++|+||||..|+.....
T Consensus 240 ~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~ 269 (369)
T 3aw8_A 240 VGVLALEFFQVG-EELLFNEMAPRVHNSGHW 269 (369)
T ss_dssp CEEEEEEEEEET-TEEEEEEEESSCCGGGTT
T ss_pred eeEEEEEEEEEC-CcEEEEEEeCCcCCccce
Confidence 357889999999 899999999999876543
No 44
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=94.76 E-value=0.022 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.3
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+++||++++++ +|+||||..|+-.
T Consensus 293 G~~~ve~~~~~~g-~~viEiN~R~~~~ 318 (452)
T 2qk4_A 293 GILYAGIMLTKNG-PKVLEFNCRFGDP 318 (452)
T ss_dssp EEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred eEEEEEEEEeCCC-cEEEEEeccCCCc
Confidence 5688999999999 9999999999843
No 45
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=94.46 E-value=0.027 Score=44.42 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=23.8
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+++||+++++ ++|+||||..|+-.
T Consensus 273 ~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 273 LGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp SEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred eeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 4678899999998 89999999999854
No 46
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=94.19 E-value=0.036 Score=43.02 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=21.9
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
.+++||++| ++++|+||||..|+-+
T Consensus 259 ~~~ve~~~~-~~~~~~iEiN~R~~~~ 283 (403)
T 4dim_A 259 AVNVDMILK-DNEVYIIELTGRVGAN 283 (403)
T ss_dssp EEEEEEEEE-TTEEEEEEEESSCCST
T ss_pred cEEEEEEEE-CCcEEEEEEcCCCCCC
Confidence 568999998 6899999999999854
No 47
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=94.12 E-value=0.05 Score=45.48 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=26.0
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
...++||++|.++++|+||||..|+-+ .++..
T Consensus 342 G~~~VEf~~d~dg~~~~lEiNpR~~~~--~~vte 373 (540)
T 3glk_A 342 SAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTE 373 (540)
T ss_dssp EEEEEEEEEETTSCEEEEEEECSCCTT--HHHHH
T ss_pred cceEEEEEEcCCCCEEEEEEECCCCCc--chhhH
Confidence 456799999999999999999999843 34444
No 48
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=93.69 E-value=0.058 Score=44.57 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.6
Q ss_pred eEEeeeEEEe-CCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILID-SDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD-~~~kpWLLEVN~~P~l~ 33 (111)
..+++||++| .++++|+||||..++-.
T Consensus 348 G~~~ve~~~~~~dg~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 348 SAGTVEYLYSHDDGKFYFLELNPRLQVE 375 (554)
T ss_dssp EEEEEEEEECTTTCCEEEEEEECSCCTT
T ss_pred ceEEEEEEEECCCCCEEEEEeeCCCCcc
Confidence 4578999998 78999999999998755
No 49
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=93.36 E-value=0.075 Score=45.11 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=25.9
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhH
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDT 40 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~ 40 (111)
...++||++|.++++|+||||..|+-+ .++..
T Consensus 358 G~~~VEfl~d~dG~~yflEINpRl~~e--~~vte 389 (587)
T 3jrx_A 358 SAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTE 389 (587)
T ss_dssp EEEEEEEEECSSSCEEEEEEESSCCTT--HHHHH
T ss_pred ceeEEEEEEeCCCCEEEEEEeCCCCCc--cceec
Confidence 456799999999999999999999843 34444
No 50
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=93.30 E-value=0.063 Score=42.52 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.5
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+++||++++ +++|+||||..|+-.
T Consensus 271 G~~~ve~~~~~-~~~~viEiN~R~~~~ 296 (449)
T 2w70_A 271 GAGTFEFLFEN-GEFYFIEMNTRIQVE 296 (449)
T ss_dssp EEEEEEEEEET-TEEEEEEEECSCCTT
T ss_pred ceEEEEEEEEC-CCEEEEEEECCCCcc
Confidence 46789999998 889999999999743
No 51
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=93.25 E-value=0.11 Score=40.98 Aligned_cols=29 Identities=3% Similarity=-0.004 Sum_probs=24.4
Q ss_pred ceeEEeeeEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 5 KYELYGFDILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 5 ~FEl~G~Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
+-.++++||+++++ ++|++|||..|+-+.
T Consensus 219 ~~G~~~vEf~~~~~-~~~v~EinpR~~~sg 247 (355)
T 3eth_A 219 YVGVMAMECFVTPQ-GLLINELAPRVHNSG 247 (355)
T ss_dssp CCEEEEEEEEEETT-EEEEEEEESSCCGGG
T ss_pred CeeEEEEEEEEECC-cEEEEEeeCCCCCCc
Confidence 44688999999974 899999999998653
No 52
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=93.07 E-value=0.069 Score=40.15 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.7
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCCCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLSPS 31 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~P~ 31 (111)
...+++||+ +.++++|+||||..++
T Consensus 249 ~G~~~vd~~-~~~g~~~~iEiN~R~~ 273 (331)
T 2pn1_A 249 VGPLDFDLF-DVAGTLYLSEINPRFG 273 (331)
T ss_dssp CEEEEEEEE-EETTEEEEEEEESSCC
T ss_pred cceEEEEEE-EcCCCEEEEEEeCCCC
Confidence 467889998 5678999999999754
No 53
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=92.01 E-value=0.12 Score=41.12 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.2
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
..++||++|+ +++|+||||..|+.
T Consensus 276 ~~~ve~~~~~-~~~~viEiN~R~~~ 299 (461)
T 2dzd_A 276 AGTVEFLVSG-DEFYFIEVNPRIQV 299 (461)
T ss_dssp EEEEEEEEET-TEEEEEEEESSCCG
T ss_pred ceEEEEEEeC-CCEEEEEEECCCCC
Confidence 4579999999 88999999999974
No 54
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=91.45 E-value=0.088 Score=43.00 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=19.7
Q ss_pred eeEEEeCCCCeEEEEeeCCCC
Q psy2507 11 FDILIDSDLKPWLLEVNLSPS 31 (111)
Q Consensus 11 ~Df~lD~~~kpWLLEVN~~P~ 31 (111)
+||++|.++++|+||||..++
T Consensus 312 vef~~~~dg~~~~iEvNpR~~ 332 (474)
T 3vmm_A 312 TEIKLMKNREPGLIESAARFA 332 (474)
T ss_dssp EEEEEEGGGEEEEEEEESSCC
T ss_pred EEEEEcCCCCEEEEEEeCCCC
Confidence 899999999999999998886
No 55
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=91.32 E-value=0.2 Score=38.44 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=21.3
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCC-CCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLS-PSL 32 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~-P~l 32 (111)
-..+++||++|+++ +|+||||.. |+.
T Consensus 221 ~G~~~vef~~~~~~-~~viEiN~R~~g~ 247 (363)
T 4ffl_A 221 KGIMDVEAIFGPKG-LRVIEIDARFPSQ 247 (363)
T ss_dssp EEEEEEEEEEETTE-EEEEEEECSCCSS
T ss_pred cceeeeeeEEeCCe-EEEEEEeCCCCCC
Confidence 34778999999865 999999997 553
No 56
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=91.23 E-value=0.12 Score=44.94 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=23.3
Q ss_pred eeEEeeeEEEeC--------CCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDS--------DLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~--------~~kpWLLEVN~~P~l~ 33 (111)
+.+-|+|++.++ .+...+||||.+|++.
T Consensus 690 l~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~ 725 (750)
T 3ln6_A 690 AWVCGVDLIIPNATQAYSKDKKNATCIELNFNPLMY 725 (750)
T ss_dssp CSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCH
T ss_pred CCeEEEEEEecCccccccccCCCeEEEEEcCCcchh
Confidence 456799999986 4566899999999995
No 57
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=91.05 E-value=0.1 Score=44.79 Aligned_cols=46 Identities=11% Similarity=0.283 Sum_probs=32.3
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHH-HHHHHHHHHhc
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLK-SAMLADTLTLV 54 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~-~~~l~d~l~lv 54 (111)
...++||++|+++++|+||||+.++-+ .++.+.+. -.+++-.++++
T Consensus 270 G~~~vEf~~d~dg~~~~lEiNpR~~~~--~~~te~~tGvdl~~~~l~~a 316 (681)
T 3n6r_A 270 SAGTVEFIVDGQKNFYFLEMNTRLQVE--HPVTELITGVDLVEQMIRVA 316 (681)
T ss_dssp SEEEEEEEECTTSCCCCCEEECSCCTT--HHHHHHHHTCCHHHHHHHHH
T ss_pred ceEEEEEEEeCCCCEEEEecccccCCC--cHHhHHHhCCCHHHHHHHHH
Confidence 355699999999999999999999754 44444322 24455555555
No 58
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=90.63 E-value=0.16 Score=44.45 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.3
Q ss_pred eeEEeeeEEEeC--------CCCeEEEEeeCCCCCC
Q psy2507 6 YELYGFDILIDS--------DLKPWLLEVNLSPSLG 33 (111)
Q Consensus 6 FEl~G~Df~lD~--------~~kpWLLEVN~~P~l~ 33 (111)
+.+-|+|+++++ .+...+||||++|++.
T Consensus 696 l~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~ 731 (757)
T 3ln7_A 696 AAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMM 731 (757)
T ss_dssp CSEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHH
T ss_pred CCEEEEEEEecCccccccccCCCeEEEEEcCCcchh
Confidence 567899999984 3567899999999975
No 59
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=90.05 E-value=0.081 Score=45.35 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=24.0
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
..+++||++|+++++|+||||..|+-.
T Consensus 296 G~~~vEf~~~~dG~~~~iEiNpR~~~~ 322 (675)
T 3u9t_A 296 GAGTVEFLLDERGQFFFMEMNTRLQVE 322 (675)
T ss_dssp SEEEEECCBCTTSCBCBCEEESSCCTT
T ss_pred cceEEEEEEcCCCCEEEEeccccccCC
Confidence 467899999999999999999999853
No 60
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=89.14 E-value=0.25 Score=36.27 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=16.9
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCC--CCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLS--PSLG 33 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~--P~l~ 33 (111)
...|+||+ | +|+||||+. |++.
T Consensus 268 ~~~~vD~~----g-~~~iEvN~r~~~~~~ 291 (316)
T 1gsa_A 268 IFVGLDII----G-DRLTEINVTSPTCIR 291 (316)
T ss_dssp CEEEEEEE----T-TEEEEEECSSCCCHH
T ss_pred cEEEEEec----C-CEEEEEcCCCCcchH
Confidence 46799998 4 599999994 5653
No 61
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=88.75 E-value=0.38 Score=43.10 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.3
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
.++++||+++ ++++|+||||..|+-
T Consensus 824 G~~~vdf~v~-~~~~~viEvNpR~~~ 848 (1073)
T 1a9x_A 824 GLMNVQFAVK-NNEVYLIEVNPRAAR 848 (1073)
T ss_dssp EEEEEEEEEC-SSCEEEEEEECSCCT
T ss_pred ceEEEEEEEE-CCeEEEEEEECCCcc
Confidence 6789999997 779999999999984
No 62
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=88.37 E-value=0.34 Score=44.14 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.3
Q ss_pred eEEeeeEEEe-CCCCeEEEEeeCCCCCC
Q psy2507 7 ELYGFDILID-SDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 7 El~G~Df~lD-~~~kpWLLEVN~~P~l~ 33 (111)
...++||++| +++++|+||||..++-.
T Consensus 289 G~~~vEf~vd~~dg~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 289 GAGTVEYLMDADTGKFYFIEVNPRIQVE 316 (1165)
T ss_dssp EEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred cceeEEEEEECCCCCEEEEEEEcCCCCC
Confidence 3567999999 88999999999999854
No 63
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=86.58 E-value=1.5 Score=35.24 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=29.7
Q ss_pred eEEeeeEEEeCCCCeEEEEeeCCCCCCCCChhhHHHHHHHHHHH
Q psy2507 7 ELYGFDILIDSDLKPWLLEVNLSPSLGCDTPLDTRLKSAMLADT 50 (111)
Q Consensus 7 El~G~Df~lD~~~kpWLLEVN~~P~l~~~~~~~~~l~~~~l~d~ 50 (111)
.+.|+|++-++ ++++++|||.-|-.......-. -++.+|+++
T Consensus 268 ~v~GVDlLrs~-~~~~V~EVNg~~fvk~~~~yyd-~~a~il~~~ 309 (330)
T 3t7a_A 268 TVCGFDLLRAN-GQSYVCDVNGFSFVKNSMKYYD-DCAKILGNI 309 (330)
T ss_dssp SEEEEEEEEET-TEEEEEEEEESCCCSSCHHHHH-HHHHHHHHH
T ss_pred ceEEEEEEEEC-CccEEEEeCCCccccCchhHHH-HHHHHHHHH
Confidence 46799999985 5689999999999887644332 334444444
No 64
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=85.99 E-value=0.69 Score=41.41 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=21.3
Q ss_pred eEEeeeEEEeC-CCCeEEEEeeCCCC
Q psy2507 7 ELYGFDILIDS-DLKPWLLEVNLSPS 31 (111)
Q Consensus 7 El~G~Df~lD~-~~kpWLLEVN~~P~ 31 (111)
...++||++|. ++++|+||||..++
T Consensus 280 G~~~vdf~~~~~~g~~~viEiNpR~~ 305 (1073)
T 1a9x_A 280 GGSNVQFAVNPKNGRLIVIEMNPRVS 305 (1073)
T ss_dssp EEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred CceEEEEEEECCCCCEEEEEecCCCC
Confidence 46789999997 79999999996555
No 65
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=82.11 E-value=1.1 Score=40.80 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEeeeEEEeCCCCeEEEEeeCCCCCC
Q psy2507 8 LYGFDILIDSDLKPWLLEVNLSPSLG 33 (111)
Q Consensus 8 l~G~Df~lD~~~kpWLLEVN~~P~l~ 33 (111)
...+||++|++ ++|+||||..++-+
T Consensus 274 ~~~vEflvd~d-~~y~iEINpR~~g~ 298 (1150)
T 3hbl_A 274 AGTVEFLVSGD-EFFFIEVNPRVQVE 298 (1150)
T ss_dssp EEEEEEEEETT-EEEEEEEECSCCTT
T ss_pred eEEEEEEEECC-eEEEEEEeCCCCCC
Confidence 45689999999 99999999999843
No 66
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=81.64 E-value=1.1 Score=41.24 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=30.6
Q ss_pred eEEeeeEEEeCC-CCeEEEEeeCCCCCCCCChhhHHH-HHHHHHHHHHhc
Q psy2507 7 ELYGFDILIDSD-LKPWLLEVNLSPSLGCDTPLDTRL-KSAMLADTLTLV 54 (111)
Q Consensus 7 El~G~Df~lD~~-~kpWLLEVN~~P~l~~~~~~~~~l-~~~~l~d~l~lv 54 (111)
...++||++|++ +++|+||||..++-. .++...+ --.+++-.++++
T Consensus 298 G~~~VEfivd~d~g~~y~iEINpRl~g~--~~~te~vtGvDlv~~~l~~a 345 (1236)
T 3va7_A 298 CAGTVEFIYDEQRDEFYFLEVNARLQVE--HPITEMVTGLDLVEWMLRIA 345 (1236)
T ss_dssp EEEEEEEEEETTTTEEEEEEEECSCCTT--HHHHHHHHCCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCCcEEEEEEECCCCCc--cHHHHHHHCCCHHHHHHHHH
Confidence 456799999985 899999999998743 2444432 223444455554
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=81.03 E-value=1.6 Score=34.48 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=25.3
Q ss_pred cceeEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 4 EKYELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 4 ~~FEl~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
.....++++|.+++++++|++|||..|+=
T Consensus 289 ~~~G~~~vE~fvt~dg~i~V~EIapR~gG 317 (361)
T 2r7k_A 289 GMIGPFCLQSLCNENLELVVFEMSARVDG 317 (361)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEESSBCG
T ss_pred CccceEEEEEEEcCCCCEEEEEEcCCCCC
Confidence 45677899999999999999999998874
No 68
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=79.69 E-value=2 Score=35.72 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=33.0
Q ss_pred eeEEeeeEEEeCCCCeEEEEeeCC-CCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy2507 6 YELYGFDILIDSDLKPWLLEVNLS-PSLGCDTPLDTRLKSAMLADTLTLVGI 56 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWLLEVN~~-P~l~~~~~~~~~l~~~~l~d~l~lv~~ 56 (111)
..+.|+|+..+.+|+-|+||-|+. ||=....--...+..+++.++++-..+
T Consensus 142 ~~i~~~Dl~r~~dG~~~vlEdn~~~PSG~~y~lenR~~~~r~~pelf~~~~v 193 (474)
T 3n6x_A 142 AHIAGVDLVRTGENDFYVLEDNLRTPSGVSYMLENRKMMMRLFPELFRRYPV 193 (474)
T ss_dssp CSEEEEEEEECSSSCEEEEEEECSSCCCHHHHHHHHHHHHHHCHHHHHHSCB
T ss_pred EEEEEEEEEECCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 468899999999999999999995 663221122333444444545444443
No 69
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=66.18 E-value=0.24 Score=35.62 Aligned_cols=17 Identities=65% Similarity=1.202 Sum_probs=11.1
Q ss_pred CCCeEEEEeeCCCCCCC
Q psy2507 18 DLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 18 ~~kpWLLEVN~~P~l~~ 34 (111)
+++|||-||+.+|+-..
T Consensus 105 dl~pwl~ei~~~p~~~~ 121 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLT 121 (144)
T ss_dssp GGHHHHHHTTCC-----
T ss_pred chhHHHHHhCCCcHHHh
Confidence 57899999999998543
No 70
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=57.40 E-value=8.4 Score=29.96 Aligned_cols=27 Identities=4% Similarity=-0.140 Sum_probs=21.6
Q ss_pred cceeEEeeeEEEeCCCCeEEEEeeCCCCC
Q psy2507 4 EKYELYGFDILIDSDLKPWLLEVNLSPSL 32 (111)
Q Consensus 4 ~~FEl~G~Df~lD~~~kpWLLEVN~~P~l 32 (111)
.....++++ +++++++|++|||..|.=
T Consensus 245 g~~G~~~vE--~~~dg~~~v~EIapR~~G 271 (320)
T 2pbz_A 245 GVIGPFALH--FAYDGSFKAIGIASRIDG 271 (320)
T ss_dssp CCCSEEEEE--EECSSSCEEEEEESSBCS
T ss_pred CceeeEEEE--EcCCCcEEEEEecCCCCC
Confidence 345677899 788899999999998553
No 71
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=43.36 E-value=23 Score=29.74 Aligned_cols=43 Identities=28% Similarity=0.303 Sum_probs=29.0
Q ss_pred eeEEeeeEEEeCCCCeEE-EEeeCC-CCCCCCChhhHHHHHHHHH
Q psy2507 6 YELYGFDILIDSDLKPWL-LEVNLS-PSLGCDTPLDTRLKSAMLA 48 (111)
Q Consensus 6 FEl~G~Df~lD~~~kpWL-LEVN~~-P~l~~~~~~~~~l~~~~l~ 48 (111)
..++--|+|+|.+...|. +|+|+- =|+..-+....++..-++.
T Consensus 149 Lgl~RSDYMld~~~~~lkQVEfNTIsaSFggls~~v~~lHr~l~~ 193 (499)
T 3kal_A 149 MGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCLMTGLHKSLLS 193 (499)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred eeeeehhhhcCCCCCceEEEEeechhhhcchHHHHHHHHHHHHHH
Confidence 467789999998766665 999995 4444444555555555554
No 72
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=31.48 E-value=32 Score=29.62 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEe-eeEEEeCC-CCeEEEEeeC-CCC
Q psy2507 8 LYG-FDILIDSD-LKPWLLEVNL-SPS 31 (111)
Q Consensus 8 l~G-~Df~lD~~-~kpWLLEVN~-~P~ 31 (111)
+|| +||.+|++ +.+-|+|.|+ +|+
T Consensus 325 lygRfDf~~dg~~g~~KllE~NADTPt 351 (652)
T 2vob_A 325 ISGRFDFAFNNETGEVKCFEYNADSAS 351 (652)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCCT
T ss_pred eEEEEEEEEcCCCCceEEEEEcCCCch
Confidence 455 99999988 7899999998 444
No 73
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=31.36 E-value=64 Score=21.55 Aligned_cols=23 Identities=13% Similarity=-0.100 Sum_probs=18.9
Q ss_pred eEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 12 DILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 12 Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
=|++|.+|++--.+++..|.-.+
T Consensus 124 tflID~~G~I~~~~~~~~~~~~~ 146 (164)
T 4gqc_A 124 VFIVKPDGTVAYKWVTDNPLNEP 146 (164)
T ss_dssp EEEECTTSBEEEEEECSCTTCCC
T ss_pred EEEECCCCEEEEEEEeCCCCCCC
Confidence 38999999999899988876543
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=30.92 E-value=27 Score=29.78 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.4
Q ss_pred EEe-eeEEEeCCCCeEEEEeeCC
Q psy2507 8 LYG-FDILIDSDLKPWLLEVNLS 29 (111)
Q Consensus 8 l~G-~Df~lD~~~kpWLLEVN~~ 29 (111)
+|| +||.+|+++ +-|+|.|+-
T Consensus 313 l~gRfDf~~dg~g-~KllE~NaD 334 (619)
T 2io8_A 313 ITGRMDFCMDERG-LKVYEYNAD 334 (619)
T ss_dssp CEEEEEEEEETTE-EEEEEEECS
T ss_pred eEEEEEEEEeCCe-eEEEEEeCC
Confidence 455 999999998 999999984
No 75
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=26.09 E-value=77 Score=20.80 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=18.5
Q ss_pred eEEEeCCCCeEEEEeeCCCCCCC
Q psy2507 12 DILIDSDLKPWLLEVNLSPSLGC 34 (111)
Q Consensus 12 Df~lD~~~kpWLLEVN~~P~l~~ 34 (111)
=|++|.+|++-..+++..|.-..
T Consensus 122 tflID~~G~I~~~~~~~~~~~~~ 144 (157)
T 4g2e_A 122 VFVIDKEGKVRYKWVSDDPTKEP 144 (157)
T ss_dssp EEEECTTSBEEEEEEESSTTCCC
T ss_pred EEEECCCCEEEEEEECCCCCCCC
Confidence 48999999998888887776443
No 76
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=21.82 E-value=64 Score=23.09 Aligned_cols=19 Identities=21% Similarity=0.562 Sum_probs=15.5
Q ss_pred eeEE-EeCCCCeEEEEeeCC
Q psy2507 11 FDIL-IDSDLKPWLLEVNLS 29 (111)
Q Consensus 11 ~Df~-lD~~~kpWLLEVN~~ 29 (111)
+|+| ++.+|.+|++||-++
T Consensus 43 aDv~al~~kg~i~ivEiKsS 62 (153)
T 3dnx_A 43 VDVMGLGPKGEIWVIECKSS 62 (153)
T ss_dssp EEEEEECTTCCEEEEEECSS
T ss_pred eeEEEECCCCcEEEEEEEcc
Confidence 5654 678999999999876
No 77
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=20.98 E-value=36 Score=24.34 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=13.3
Q ss_pred EeeeEEEeCCCCeE
Q psy2507 9 YGFDILIDSDLKPW 22 (111)
Q Consensus 9 ~G~Df~lD~~~kpW 22 (111)
+|+|+++..+|++|
T Consensus 121 ~~~ei~vG~NG~IW 134 (175)
T 2ja9_A 121 TKFEVAIGLNGKIW 134 (175)
T ss_dssp CCCEEEEETTTEEE
T ss_pred CCeEEEEECCcEEE
Confidence 58999999999999
No 78
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A {Trypanosoma brucei}
Probab=20.32 E-value=2.3e+02 Score=24.07 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=32.6
Q ss_pred ceeEEeeeEEEeCC------C---CeEEEEeeC-CCCCCCCChhhHHHHHHHHH
Q psy2507 5 KYELYGFDILIDSD------L---KPWLLEVNL-SPSLGCDTPLDTRLKSAMLA 48 (111)
Q Consensus 5 ~FEl~G~Df~lD~~------~---kpWLLEVN~-~P~l~~~~~~~~~l~~~~l~ 48 (111)
...++--|+|+|.+ . .+-.+|+|+ +=|+..-+....++..-++.
T Consensus 121 ~Lgl~RSDYM~~~~~~~~~~~~~~~~KQVE~NTIS~SFggls~~v~~lH~~l~~ 174 (562)
T 2wyo_A 121 MLGIFRTDYMREGVYDKMLSTTASRWKNVEINTISCSFAGLSPLITEFHQHIAA 174 (562)
T ss_dssp EEEEEEEEEEEBSCCCC--CCSSCSEEEEEEECSSCCCTTTHHHHHHHHHHHHH
T ss_pred eeeeeehhhhcCccccccccccccceeEEEeechhhhcchhHHHHHHHHHHHHh
Confidence 35678899999972 2 567799998 55666777777777777774
Done!