RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2507
         (111 letters)



>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 206

 Score = 30.0 bits (66), Expect = 0.039
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 6   YELYGFDILIDSDLKPWLLEVNLSPS 31
            ++     +   D K ++ EV     
Sbjct: 154 LDICAVKAVHGKDGKDYIFEVMDCSM 179


>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
           {Escherichia coli, gene ddlB [TaxId: 562]}
          Length = 210

 Score = 27.4 bits (59), Expect = 0.34
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 8   LYGFDILIDSDLKPWLLEVNLSPSL 32
               D+++DSD + +LLE N SP +
Sbjct: 157 WGRIDVMLDSDGQFYLLEANTSPGM 181


>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
           C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
          Length = 228

 Score = 27.3 bits (59), Expect = 0.41
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 8   LYGFDILIDSDLKPWLLEVNLSPSL 32
               D L+D +  P+L E N  P  
Sbjct: 165 EARMDFLLDENNVPYLGEPNTLPGF 189


>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
           C-domain {Enterococcus faecium [TaxId: 1352]}
          Length = 211

 Score = 24.7 bits (52), Expect = 2.7
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 8   LYGFDILIDSDLKPWLLEVNLSPSL 32
           L   D+ +  + +  L EVN  P  
Sbjct: 157 LARVDMFLQDNGRIVLNEVNTLPGF 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,498
Number of extensions: 13736
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 5
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)