BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2511
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1
Length = 521
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 4 TSQRPKNGGAETKLGNWGKWL--EDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELI 61
SQ+PK+GG+ T LG WG W + +S M Y++G CW GP R+T VR+ CG E +
Sbjct: 426 VSQKPKHGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVT 485
Query: 62 SVTEPNRCEYLFEFLT 77
S TEP+RCEYL E +T
Sbjct: 486 STTEPSRCEYLMELMT 501
>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2
Length = 528
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 4 TSQRPKNGGAETKLGNWGKWL--EDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELI 61
SQ+PK GG+ T LG WG W+ + +S M Y++G CW GP R+T VR+ CG E +
Sbjct: 433 VSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETMVT 492
Query: 62 SVTEPNRCEYLFEFL 76
S TEP+RCEYL E +
Sbjct: 493 STTEPSRCEYLMELM 507
>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1
Length = 533
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 4 TSQRPKNGGAETKLGNWGKWL--EDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELI 61
SQ+PK GG+ T LG WG W + +S M Y++G CW GP R+T VR+ CG E +
Sbjct: 438 VSQKPKLGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVT 497
Query: 62 SVTEPNRCEYLFEFLT 77
S TEP+RCEYL E +T
Sbjct: 498 STTEPSRCEYLMELMT 513
>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gtb1 PE=1 SV=1
Length = 506
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 30 SVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEFLTPAA 80
+V+ Y+ G +CWNGP R+ V ++CG+ENE++SV E +CEYL + +PAA
Sbjct: 421 NVLKYENGQSCWNGPHRSAIVTVECGVENEIVSVLEAQKCEYLIKMKSPAA 471
>sp|Q04924|GLU2B_YEAST Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GTB1 PE=1 SV=1
Length = 702
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 20 WGKWLEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEFLTP 78
+G E +N V+ Y+ G CWNGP+R+ V ++C + ++ SV E +C Y+F+ + P
Sbjct: 626 FGNLNELNNGLVLEYENGDQCWNGPRRSATVFVRCSDKFKIRSVHEATKCNYIFDVVGP 684
>sp|Q9UJJ9|GNPTG_HUMAN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Homo
sapiens GN=GNPTG PE=1 SV=1
Length = 305
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 17 LGNWGKW-LEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEF 75
LG W +W + ++ ++ M+ G C + R + V + CG N L V+EP+ C Y F
Sbjct: 105 LGIWHEWEIANNTFTGMWMRDGDACRSR-SRQSKVELACGKSNRLAHVSEPSTCVYALTF 163
Query: 76 LTP 78
TP
Sbjct: 164 ETP 166
>sp|Q58CS8|GNPTG_BOVIN N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Bos
taurus GN=GNPTG PE=1 SV=4
Length = 306
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 17 LGNWGKW-LEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEF 75
LG W +W + ++ + M+ G C + R + V + CG N L V+EP+ C Y F
Sbjct: 105 LGIWHEWEITNNTFRGMWMRDGDACQSR-SRQSKVELTCGKSNRLAHVSEPSTCVYALTF 163
Query: 76 LTP 78
TP
Sbjct: 164 ETP 166
>sp|Q6S5C2|GNPTG_MOUSE N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Mus
musculus GN=Gnptg PE=2 SV=1
Length = 307
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 17 LGNWGKW-LEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEF 75
LG W +W + ++ + M+ G +C + R + V + CG N L V+EP+ C Y F
Sbjct: 105 LGIWHEWEIINNTFKGMWMTDGDSC-HSRSRQSKVELTCGKINRLAHVSEPSTCVYALTF 163
Query: 76 LTP 78
TP
Sbjct: 164 ETP 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,267,245
Number of Sequences: 539616
Number of extensions: 1082386
Number of successful extensions: 1740
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1729
Number of HSP's gapped (non-prelim): 8
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)