Query psy2511
Match_columns 80
No_of_seqs 115 out of 303
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 18:04:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13015 PRKCSH_1: Glucosidase 100.0 3.8E-30 8.3E-35 176.9 8.3 70 1-80 58-127 (154)
2 KOG2397|consensus 99.9 3.6E-26 7.9E-31 178.4 6.6 70 1-80 398-467 (480)
3 KOG3394|consensus 99.3 5.3E-12 1.1E-16 99.9 6.6 67 14-80 144-228 (502)
4 PF02157 Man-6-P_recep: Mannos 98.0 9.4E-06 2E-10 60.8 5.0 77 4-80 91-179 (278)
5 PF00878 CIMR: Cation-independ 97.9 1.3E-05 2.8E-10 53.2 3.4 38 43-80 1-41 (145)
6 KOG4504|consensus 97.0 0.0032 7E-08 48.4 7.0 54 27-80 163-223 (370)
7 PF09451 ATG27: Autophagy-rela 96.5 0.012 2.6E-07 43.2 6.9 51 28-80 117-170 (268)
8 PF07915 PRKCSH: Glucosidase I 96.4 0.0018 3.9E-08 38.9 1.7 39 2-40 19-81 (81)
9 PF06919 Phage_T4_Gp30_7: Phag 73.9 0.94 2E-05 30.2 -0.2 14 38-51 79-92 (121)
10 KOG3394|consensus 68.3 3.7 8E-05 33.5 1.9 51 29-79 416-472 (502)
11 KOG3507|consensus 54.4 7.8 0.00017 23.2 1.2 24 45-69 14-40 (62)
12 KOG4504|consensus 52.9 23 0.00049 27.7 3.8 47 11-57 16-64 (370)
13 PF09038 53-BP1_Tudor: Tumour 43.6 21 0.00045 24.1 2.0 26 15-40 5-43 (122)
14 KOG2397|consensus 39.9 0.97 2.1E-05 36.5 -5.6 60 12-73 97-163 (480)
15 PRK14645 hypothetical protein; 33.6 67 0.0014 22.0 3.4 22 59-80 66-87 (154)
16 PRK14634 hypothetical protein; 29.6 28 0.00061 23.7 1.0 21 60-80 65-85 (155)
17 cd01206 Homer Homer type EVH1 29.4 1E+02 0.0022 20.5 3.5 36 28-64 10-51 (111)
18 PF13004 BACON: Bacteroidetes- 27.3 93 0.002 17.2 2.8 21 43-63 46-67 (71)
19 cd01737 LSm16_N LSm16 belongs 26.5 58 0.0013 19.5 1.8 38 16-58 16-59 (62)
20 PF02140 Gal_Lectin: Galactose 25.1 73 0.0016 18.6 2.2 17 37-54 64-80 (80)
21 PRK14636 hypothetical protein; 24.2 40 0.00087 23.6 1.0 21 60-80 63-83 (176)
22 smart00041 CT C-terminal cysti 23.5 95 0.0021 18.6 2.5 36 35-70 40-76 (82)
23 PF05798 Phage_FRD3: Bacteriop 23.1 1.2E+02 0.0025 18.7 2.7 24 56-79 23-46 (75)
24 PRK14639 hypothetical protein; 22.2 52 0.0011 22.1 1.2 21 60-80 53-73 (140)
25 PF07771 TSGP1: Tick salivary 21.9 90 0.0019 20.7 2.3 14 28-41 50-63 (120)
26 PRK14644 hypothetical protein; 21.8 49 0.0011 22.2 1.0 23 58-80 49-71 (136)
27 PF14692 DUF4462: Domain of un 21.8 31 0.00067 17.6 0.0 20 38-57 5-24 (28)
28 KOG3821|consensus 21.0 48 0.001 27.6 1.0 16 32-47 408-423 (563)
29 PRK14646 hypothetical protein; 20.7 49 0.0011 22.6 0.8 23 58-80 63-85 (155)
No 1
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=99.96 E-value=3.8e-30 Score=176.93 Aligned_cols=70 Identities=51% Similarity=1.018 Sum_probs=67.2
Q ss_pred CCceEeecCCCCCceeeeeeccccCCCCeEEEEeCCCccCCCCCCceEEEEEEcCCCCcEEEecCCCCcEEEEEEecccC
Q psy2511 1 MNKTSQRPKNGGAETKLGNWGKWLEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 1 f~~~~Q~~~~g~~~~~LG~~~~w~~~~~~~~~~y~~G~~CwnG~~Rst~V~l~Cg~~~~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
|++|+| ..++||+|.+|. +.+|.|++|++|||||+|||+|.|.||++++|++|.||++|+|.|+|.||||
T Consensus 58 f~~v~Q------~~~~lG~~~~~~----~~~m~y~~G~~CwnGp~Rst~V~l~Cg~~~~l~sV~Ep~~C~Y~~~~~TP~a 127 (154)
T PF13015_consen 58 FGNVTQ------DSTSLGSFKGWE----GSKMKYENGDKCWNGPQRSTTVHLECGEENKLVSVSEPSKCEYVMEFETPAA 127 (154)
T ss_pred CCCeee------ccccceeeccce----eeEEEECCCcccCCCCCcCEEEEEECCCcceEEEecCCCceEEEEEEeeCcc
Confidence 789999 478999999996 7899999999999999999999999999999999999999999999999997
No 2
>KOG2397|consensus
Probab=99.93 E-value=3.6e-26 Score=178.44 Aligned_cols=70 Identities=53% Similarity=1.114 Sum_probs=63.5
Q ss_pred CCceEeecCCCCCceeeeeeccccCCCCeEEEEeCCCccCCCCCCceEEEEEEcCCCCcEEEecCCCCcEEEEEEecccC
Q psy2511 1 MNKTSQRPKNGGAETKLGNWGKWLEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 1 f~~~~Q~~~~g~~~~~LG~~~~w~~~~~~~~~~y~~G~~CwnG~~Rst~V~l~Cg~~~~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
|++|+|+++.|++ |+..+. .+|.|+||++|||||.|||+|.+.||.+++|+||.||++|+|.|+|.||||
T Consensus 398 ~~~~tq~~~~~~~---------w~~~e~-~~m~y~nG~~CWnGP~RSa~v~v~Cg~e~~i~sv~Ep~kCeY~~~~~tPaa 467 (480)
T KOG2397|consen 398 FKPVTQKSIYGGS---------WSGPEG-SVMKYENGQQCWNGPNRSATVTVRCGLENEIVSVTEPSKCEYLFELVTPAA 467 (480)
T ss_pred ccccccccccccc---------ccCCcc-ceeeecCccccccCCCcceeEEEEecccceeeeccccccceeeeEeccccc
Confidence 7899999776655 554333 999999999999999999999999999999999999999999999999997
No 3
>KOG3394|consensus
Probab=99.30 E-value=5.3e-12 Score=99.86 Aligned_cols=67 Identities=34% Similarity=0.525 Sum_probs=57.2
Q ss_pred ceeeeeeccccC------------C--CCeEEEEeCCCccC-CCCCCceEEEEEEcCC---CCcEEEecCCCCcEEEEEE
Q psy2511 14 ETKLGNWGKWLE------------D--SNYSVMFYDRGHTC-WNGPQRTTHVRIKCGL---ENELISVTEPNRCEYLFEF 75 (80)
Q Consensus 14 ~~~LG~~~~w~~------------~--~~~~~~~y~~G~~C-wnG~~Rst~V~l~Cg~---~~~l~sv~Eps~C~Y~~~~ 75 (80)
.--||.|..=.. + ..|+.+.|+||++| .+|.||.++|++.|++ .+.|.||.|+++|+|+|++
T Consensus 144 e~yLg~~~~~~~~~~ke~~~~~~~~~~~~Y~s~ty~nGT~CDltg~PR~~~VrYvC~~~~~~~~I~sV~EvssC~Ye~~I 223 (502)
T KOG3394|consen 144 EFYLGNFLGKFTASLKEREAEASTDDRKPYHSETYGNGTMCDLTGRPRMVEVRYVCDESSGKHYITSVTEVSSCVYEATI 223 (502)
T ss_pred eeeeeeccccchhhhhhhhhhhhhccccceeEEEecCCCccccCCCCceEEEEEEeCCCCCcceEEEEeeccceeEEEEE
Confidence 455888877211 1 36999999999999 6899999999999996 5889999999999999999
Q ss_pred ecccC
Q psy2511 76 LTPAA 80 (80)
Q Consensus 76 ~TP~a 80 (80)
.||++
T Consensus 224 ~tp~L 228 (502)
T KOG3394|consen 224 LTPTL 228 (502)
T ss_pred ecccc
Confidence 99974
No 4
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=98.02 E-value=9.4e-06 Score=60.82 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=54.2
Q ss_pred eEeecCCCCCceeeeeecccc--CCCCeEEEEeCCCccCCC---CCCceEEEEEEcCCCC---cEEE----ecCCCCcEE
Q psy2511 4 TSQRPKNGGAETKLGNWGKWL--EDSNYSVMFYDRGHTCWN---GPQRTTHVRIKCGLEN---ELIS----VTEPNRCEY 71 (80)
Q Consensus 4 ~~Q~~~~g~~~~~LG~~~~w~--~~~~~~~~~y~~G~~Cwn---G~~Rst~V~l~Cg~~~---~l~s----v~Eps~C~Y 71 (80)
+.|.+++.+-.++||.++.=- .+.+...+.|.+|+.+.+ ..+|++.|.|.|..+. .+.. +..+.-|.|
T Consensus 91 ~vq~d~~t~K~~vIG~~n~T~vf~G~kwvmltY~gGd~yd~~~~~~~Rka~i~~tCdrd~~~~~~~~vse~~g~~~~C~Y 170 (278)
T PF02157_consen 91 LVQIDKKTGKYTVIGRYNSTPVFRGSKWVMLTYKGGDKYDSHCGKERRKAIIMFTCDRDTLAGNFTVVSEFVGKPNDCFY 170 (278)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEESSEEEEEEEEEEB-SSSGGG-BEEEEEEEEE-TT-SSEEEEEEEEEETSSSEEEE
T ss_pred EEEecCCCCceEEEEeeeeeEEecCceEEEEEcCCCCccCCccccccceeEEEEEEcCCCCccccceeeeecCCccceEE
Confidence 467777755578999998721 133456778999988754 4579999999998863 2223 455899999
Q ss_pred EEEEecccC
Q psy2511 72 LFEFLTPAA 80 (80)
Q Consensus 72 ~~~~~TP~a 80 (80)
.|++.||+|
T Consensus 171 ~FEv~S~~A 179 (278)
T PF02157_consen 171 FFEVRSSHA 179 (278)
T ss_dssp EEEEEEGGG
T ss_pred EEEecchhc
Confidence 999999976
No 5
>PF00878 CIMR: Cation-independent mannose-6-phosphate receptor repeat; InterPro: IPR000479 The cation-independent mannose-6-phosphate receptor is a type I membrane protein responsible for transport of phosphorylated lysosomal enzymes from the golgi complex and the cell surface to lysosomes. Lysosomal enzymes bearing phosphomannosyl residues bind specifically to mannose-6-phosphate receptors in the golgi apparatus and the resulting receptor-ligand complex is transported to an acidic prelysosomal compartment where the low pH mediates the dissociation of the complex. This receptor also binds insulin growth factor. It contains 15 copies of a repeat.; GO: 0005215 transporter activity, 0006810 transport, 0005737 cytoplasm, 0016021 integral to membrane; PDB: 1SYO_A 1SZ0_A 1Q25_A 2KVB_A 2KVA_A 2L2G_A 2V5O_A 1GP0_A 1GP3_A 1E6F_B ....
Probab=97.90 E-value=1.3e-05 Score=53.17 Aligned_cols=38 Identities=34% Similarity=0.655 Sum_probs=32.3
Q ss_pred CCCceEEEEEEcCCC---CcEEEecCCCCcEEEEEEecccC
Q psy2511 43 GPQRTTHVRIKCGLE---NELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 43 G~~Rst~V~l~Cg~~---~~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
|.+|++.|.|.|... ...+-+.|...|.|.|.+.||+|
T Consensus 1 ~~~rst~I~F~C~~~~~~~~P~~~~~~~~C~y~f~W~T~~A 41 (145)
T PF00878_consen 1 GYKRSTTIIFVCDPGAGSGSPVFVSEDDSCTYVFEWRTPLA 41 (145)
T ss_dssp SBEEEEEEEEEE-SSSSTTEEEEEEEETTTEEEEEEEEGGG
T ss_pred CceEEEEEEEEeCCCCCCCCCEEEEecCCeEEEEEEEehhc
Confidence 568999999999874 47788888889999999999987
No 6
>KOG4504|consensus
Probab=97.02 E-value=0.0032 Score=48.44 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=45.8
Q ss_pred CCeEEEEeCCCccCCCC--CCceEEEEEEcCCC----C-cEEEecCCCCcEEEEEEecccC
Q psy2511 27 SNYSVMFYDRGHTCWNG--PQRTTHVRIKCGLE----N-ELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 27 ~~~~~~~y~~G~~CwnG--~~Rst~V~l~Cg~~----~-~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
++...|.|+||.+|.++ ..-++-+.|+|.++ + .|+.+-.-.+|.|-|++.||.|
T Consensus 163 ~k~L~l~y~nGS~CP~~~~~~~~TlisFvC~~e~~~~~~~i~y~gnl~~Ct~FFew~tihA 223 (370)
T KOG4504|consen 163 NKRLQLVYKNGSPCPSKSGLSYKTLISFVCRPEAGPTNRPILYSGNLQTCTLFFEWHTIHA 223 (370)
T ss_pred cceEEEEecCCCcCCCCCCccceeeEEEEecCCCCCCCccEEEeccccceEEEEEeccccc
Confidence 45689999999999764 44489999999875 4 5788899999999999999976
No 7
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=96.54 E-value=0.012 Score=43.15 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=41.8
Q ss_pred CeEEEEeCCCccCCCCCCceEEEEEEcCCC---CcEEEecCCCCcEEEEEEecccC
Q psy2511 28 NYSVMFYDRGHTCWNGPQRTTHVRIKCGLE---NELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 28 ~~~~~~y~~G~~CwnG~~Rst~V~l~Cg~~---~~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
....+.|.+ .+|...+|++.|.|.|.++ .++....+...|.|.+.+.||+|
T Consensus 117 ~Gl~l~l~G--~~~~~~~~~a~i~f~Cd~~~~~~~~~~~~~~~~~~l~l~~~t~~a 170 (268)
T PF09451_consen 117 EGLRLKLKG--GKWGSNNQSAVIEFQCDKNASGPEGTSKVDWDGCVLRLEWKTKYA 170 (268)
T ss_pred CCEEEEEeC--CCCCCceEEEEEEEEcCCCCCCCceeeeecCCCcEEEEEEecccc
Confidence 356777777 8899999999999999884 33444477899999999999986
No 8
>PF07915 PRKCSH: Glucosidase II beta subunit-like protein; InterPro: IPR012913 The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II (P14314 from SWISSPROT), which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyses the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing []. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum []. Mutations in the gene coding for PRKCSH have been found to be involved in the development of autosomal dominant polycystic liver disease (ADPLD), but the precise role the protein has in the pathogenesis of this disease is unknown []. ; PDB: 3AIH_A.
Probab=96.45 E-value=0.0018 Score=38.93 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=23.4
Q ss_pred CceEee----cCCCCCceeeeee-----ccccC---------------CCCeEEEEeCCCccC
Q psy2511 2 NKTSQR----PKNGGAETKLGNW-----GKWLE---------------DSNYSVMFYDRGHTC 40 (80)
Q Consensus 2 ~~~~Q~----~~~g~~~~~LG~~-----~~w~~---------------~~~~~~~~y~~G~~C 40 (80)
+.+.|. ++......+||+| ..|.. ...|..|.|+||+.|
T Consensus 19 ~~v~QfH~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~Gt~C 81 (81)
T PF07915_consen 19 KHVRQFHEEEKDKPGQEYSLGRFDNESHFSWRDSNVDSSPPTRKSEDGSQRYISQVYSNGTIC 81 (81)
T ss_dssp TEEEEE-EETTEE-S--EEEEEE--EEEEEEE----------S-------EEEEEEEEE-SB-
T ss_pred CcEEEecccCCCCCcceEEeeeEecccchhhhccccccCccccccccCCccEEEEEeCCCcCC
Confidence 567886 3346678999999 23322 125999999999999
No 9
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=73.86 E-value=0.94 Score=30.18 Aligned_cols=14 Identities=50% Similarity=1.161 Sum_probs=11.2
Q ss_pred ccCCCCCCceEEEE
Q psy2511 38 HTCWNGPQRTTHVR 51 (80)
Q Consensus 38 ~~CwnG~~Rst~V~ 51 (80)
.+||||.+|.+-|+
T Consensus 79 HPcwnG~nRk~Lvk 92 (121)
T PF06919_consen 79 HPCWNGVNRKLLVK 92 (121)
T ss_pred CcCccCcchhhHHH
Confidence 47999999987654
No 10
>KOG3394|consensus
Probab=68.28 E-value=3.7 Score=33.45 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=41.3
Q ss_pred eEEEEeCCCccCC-CCCCceEEEEEEcCCCC-cE----EEecCCCCcEEEEEEeccc
Q psy2511 29 YSVMFYDRGHTCW-NGPQRTTHVRIKCGLEN-EL----ISVTEPNRCEYLFEFLTPA 79 (80)
Q Consensus 29 ~~~~~y~~G~~Cw-nG~~Rst~V~l~Cg~~~-~l----~sv~Eps~C~Y~~~~~TP~ 79 (80)
-..|++++|++|. .+.+|++.|.+.|-+.. .- ..--||-.|.|.+.+.+|-
T Consensus 416 ~i~~~~~k~~~~~~~~~~~~v~v~lk~~~s~~~~~~v~~y~l~~~~~~~il~~~~~~ 472 (502)
T KOG3394|consen 416 SIEHEEEKENHELQPNVDREVAVKLKLKPSLNSDNAVPQYNLEPMSCQYILGVESRD 472 (502)
T ss_pred cHHHHhhcCChhccCCCCceeeeeccCCCCCCCcccchhhhcccccceeeecccCCc
Confidence 4678999999995 48899999999997742 21 3445899999999999884
No 11
>KOG3507|consensus
Probab=54.38 E-value=7.8 Score=23.23 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=16.5
Q ss_pred CceEEEEEEcCC---CCcEEEecCCCCc
Q psy2511 45 QRTTHVRIKCGL---ENELISVTEPNRC 69 (80)
Q Consensus 45 ~Rst~V~l~Cg~---~~~l~sv~Eps~C 69 (80)
+|+..+.+.||+ +|. ++-.++-+|
T Consensus 14 ~r~~~miYiCgdC~~en~-lk~~D~irC 40 (62)
T KOG3507|consen 14 PRTATMIYICGDCGQENT-LKRGDVIRC 40 (62)
T ss_pred CCcccEEEEecccccccc-ccCCCcEeh
Confidence 499999999988 343 444555444
No 12
>KOG4504|consensus
Probab=52.94 E-value=23 Score=27.74 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=35.4
Q ss_pred CCCceeeeeeccccC-CCCeEEEEeCCCccCCC-CCCceEEEEEEcCCC
Q psy2511 11 GGAETKLGNWGKWLE-DSNYSVMFYDRGHTCWN-GPQRTTHVRIKCGLE 57 (80)
Q Consensus 11 g~~~~~LG~~~~w~~-~~~~~~~~y~~G~~Cwn-G~~Rst~V~l~Cg~~ 57 (80)
+...++||+...-.. .+......|.+|+.|.. -|+.++++.|-|...
T Consensus 16 ~s~pv~L~~~~~~~q~a~g~~v~~~~~~~l~~d~~pk~~~~~~~fCA~s 64 (370)
T KOG4504|consen 16 GSKPVNLGRVRDGPQWADGIIVLKYVDGDLCPDGIPKKSTTIRFFCAES 64 (370)
T ss_pred cccceEeeccCCCcccccceEEEEecccccCCCCCCCcccccceeeecc
Confidence 344678988744211 35688999999999955 566999999999874
No 13
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=43.59 E-value=21 Score=24.08 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=16.1
Q ss_pred eeeeeeccccC-------------CCCeEEEEeCCCccC
Q psy2511 15 TKLGNWGKWLE-------------DSNYSVMFYDRGHTC 40 (80)
Q Consensus 15 ~~LG~~~~w~~-------------~~~~~~~~y~~G~~C 40 (80)
+.+-+|.+|.. .+....+.|++|+.|
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~~~~~kykv~FdDG~~~ 43 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSDKGKNKYKVLFDDGYEC 43 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEEETTTEEEEEETTS-EE
T ss_pred cccEEEEEEccCCcccCceEeecCCCCeEEEEecCCccc
Confidence 34556777754 234567889999998
No 14
>KOG2397|consensus
Probab=39.86 E-value=0.97 Score=36.51 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=45.6
Q ss_pred CCceeeeeeccccCCCCeEEEEeCCCccCCCCCCceEE-------EEEEcCCCCcEEEecCCCCcEEEE
Q psy2511 12 GAETKLGNWGKWLEDSNYSVMFYDRGHTCWNGPQRTTH-------VRIKCGLENELISVTEPNRCEYLF 73 (80)
Q Consensus 12 ~~~~~LG~~~~w~~~~~~~~~~y~~G~~CwnG~~Rst~-------V~l~Cg~~~~l~sv~Eps~C~Y~~ 73 (80)
.+.++.|.|+-|++-+.|.+- +..|..|+. ..|.++ +.+.||.+.+..-+.|+.+|.|.+
T Consensus 97 ssrV~DGICDCCDgSDE~~Sg-v~c~ntC~e-~gR~~r~~~~~~~~~yk~G~e~R~~~i~e~k~~~~~~ 163 (480)
T KOG2397|consen 97 SSRVNDGICDCCDGSDEYLSG-VDCPNTCIE-LGRAARIMLEKDAEIYKPGKEIREELLDESKTAREAF 163 (480)
T ss_pred chhccCcccccccCCCCccCC-CCCcchHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHhcccccchhh
Confidence 457889999999873333332 677777764 456666 788999999988999999999983
No 15
>PRK14645 hypothetical protein; Provisional
Probab=33.63 E-value=67 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.2
Q ss_pred cEEEecCCCCcEEEEEEecccC
Q psy2511 59 ELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 59 ~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
.++.+.+|-...|.++|.||-+
T Consensus 66 ~~LD~~d~i~~~Y~LEVSSPGl 87 (154)
T PRK14645 66 AELDRLDPIEGEYRLEVESPGP 87 (154)
T ss_pred HHhcccccCCCceEEEEeCCCC
Confidence 3468888888999999999953
No 16
>PRK14634 hypothetical protein; Provisional
Probab=29.64 E-value=28 Score=23.74 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.7
Q ss_pred EEEecCCCCcEEEEEEecccC
Q psy2511 60 LISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 60 l~sv~Eps~C~Y~~~~~TP~a 80 (80)
++.+.+|-...|.++|+||-+
T Consensus 65 ~LD~~d~i~~~Y~LEVSSPGl 85 (155)
T PRK14634 65 ALEASQLLTEAYVLEISSPGI 85 (155)
T ss_pred HhcccccCCCCeEEEEeCCCC
Confidence 467888888999999999953
No 17
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=29.37 E-value=1e+02 Score=20.46 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=26.2
Q ss_pred CeEEEEeCCCcc-CCC--CCCceEEEEEEcCCC---CcEEEec
Q psy2511 28 NYSVMFYDRGHT-CWN--GPQRTTHVRIKCGLE---NELISVT 64 (80)
Q Consensus 28 ~~~~~~y~~G~~-Cwn--G~~Rst~V~l~Cg~~---~~l~sv~ 64 (80)
+-++|.|+++++ ||- |+ .-++|.|-..+. .+|+++.
T Consensus 10 rA~V~~yd~~tKk~WvPs~~-~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASK-HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCCC-CceeEEEEecCCCcEEEEEEec
Confidence 457999999986 994 43 457888888763 5567764
No 18
>PF13004 BACON: Bacteroidetes-Associated Carbohydrate-binding Often N-terminal; InterPro: IPR024361 The BACON (Bacteroidetes-Associated Carbohydrate-binding Often N-terminal) domain is an all-beta domain found in diverse architectures, principally in combination with carbohydrate-active enzymes and proteases. These architectures suggest a carbohydrate-binding function, which is also supported by the nature of BACON's few conserved amino-acids. The phyletic distribution of BACON and other data tentatively suggest that it may frequently function to bind mucin [].
Probab=27.32 E-value=93 Score=17.17 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=14.4
Q ss_pred CCCceEEEEE-EcCCCCcEEEe
Q psy2511 43 GPQRTTHVRI-KCGLENELISV 63 (80)
Q Consensus 43 G~~Rst~V~l-~Cg~~~~l~sv 63 (80)
+.+|++.|.| ..+....-+.|
T Consensus 46 ~~~R~~~I~i~~~~~~~~~i~I 67 (71)
T PF13004_consen 46 GEERTATITISKSGSVTKTITI 67 (71)
T ss_pred CCeeEEEEEEEeCCCcEEEEEE
Confidence 5689999999 66655444444
No 19
>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. LSm16 has, in addition to its N-terminal Sm-like domain, a C-terminal Yjef_N-type rossman fold domain of unknown function.
Probab=26.54 E-value=58 Score=19.51 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=26.6
Q ss_pred eeeeeccccC----CCC--eEEEEeCCCccCCCCCCceEEEEEEcCCCC
Q psy2511 16 KLGNWGKWLE----DSN--YSVMFYDRGHTCWNGPQRTTHVRIKCGLEN 58 (80)
Q Consensus 16 ~LG~~~~w~~----~~~--~~~~~y~~G~~CwnG~~Rst~V~l~Cg~~~ 58 (80)
.||.|++-.. ... -...-|.||-+|.| .+|.|.|.+-.
T Consensus 16 ~lGVyQG~i~~V~~~~qTI~l~~~~~ngik~~~-----~EVt~~~~DI~ 59 (62)
T cd01737 16 TLGVYQGLVSAVDQESQTISLAFPFHNGVKCLV-----PEVTFRAGDIR 59 (62)
T ss_pred ceEEEEEEEEEeCccceEEEEeecccCCccccC-----ceEEEEEcchh
Confidence 6999988532 121 33456789999976 78999998743
No 20
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=25.10 E-value=73 Score=18.64 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=10.9
Q ss_pred CccCCCCCCceEEEEEEc
Q psy2511 37 GHTCWNGPQRTTHVRIKC 54 (80)
Q Consensus 37 G~~CwnG~~Rst~V~l~C 54 (80)
||+| -|...-.+|.+.|
T Consensus 64 ~dpC-~~~~KyL~V~Y~C 80 (80)
T PF02140_consen 64 GDPC-PGTSKYLEVTYTC 80 (80)
T ss_dssp --SS-TTS--EEEEEEEE
T ss_pred CCCC-CCCCeEEEEEEEC
Confidence 8899 4677899999888
No 21
>PRK14636 hypothetical protein; Provisional
Probab=24.16 E-value=40 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.8
Q ss_pred EEEecCCCCcEEEEEEecccC
Q psy2511 60 LISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 60 l~sv~Eps~C~Y~~~~~TP~a 80 (80)
++.+.+|-...|.++|+||-+
T Consensus 63 ~LD~~d~i~~~Y~LEVSSPGl 83 (176)
T PRK14636 63 VFDELDPIEDAYRLEVSSPGI 83 (176)
T ss_pred HhccCcCCCCCeEEEEeCCCC
Confidence 468888888999999999953
No 22
>smart00041 CT C-terminal cystine knot-like domain (CTCK). The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.
Probab=23.48 E-value=95 Score=18.57 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=24.5
Q ss_pred CCCccCCCCCCceEEEEEEcCCC-CcEEEecCCCCcE
Q psy2511 35 DRGHTCWNGPQRTTHVRIKCGLE-NELISVTEPNRCE 70 (80)
Q Consensus 35 ~~G~~CwnG~~Rst~V~l~Cg~~-~~l~sv~Eps~C~ 70 (80)
....-|---.-|...|.|.|-+. .....|..+..|.
T Consensus 40 ~~c~CC~p~~~~~~~v~l~C~dg~~~~~~v~~i~~C~ 76 (82)
T smart00041 40 HSCSCCQPHKTKTRQVRLRCPDGSTVKKTVMHIEECG 76 (82)
T ss_pred cCCCccCCceeEEEEEEEECCCCCEEEEEEEEEEecc
Confidence 34556655677899999999664 4456676666553
No 23
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=23.07 E-value=1.2e+02 Score=18.72 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.6
Q ss_pred CCCcEEEecCCCCcEEEEEEeccc
Q psy2511 56 LENELISVTEPNRCEYLFEFLTPA 79 (80)
Q Consensus 56 ~~~~l~sv~Eps~C~Y~~~~~TP~ 79 (80)
++-.|.||....-|...++++.|+
T Consensus 23 Pelsi~si~d~~f~~~~i~i~GPl 46 (75)
T PF05798_consen 23 PELSITSIQDSKFCSIQIVIEGPL 46 (75)
T ss_pred CceEEEEeecCCcceEEEEEeccH
Confidence 456678999999999999999996
No 24
>PRK14639 hypothetical protein; Provisional
Probab=22.21 E-value=52 Score=22.06 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=17.4
Q ss_pred EEEecCCCCcEEEEEEecccC
Q psy2511 60 LISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 60 l~sv~Eps~C~Y~~~~~TP~a 80 (80)
++.+.+|-.-.|.+++.||-+
T Consensus 53 ~LD~~d~i~~~Y~LEVSSPGl 73 (140)
T PRK14639 53 IFDVEPPVSGEYFLEVSSPGL 73 (140)
T ss_pred HhccccccCCCeEEEEeCCCC
Confidence 467788888999999999953
No 25
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=21.86 E-value=90 Score=20.67 Aligned_cols=14 Identities=29% Similarity=0.868 Sum_probs=11.4
Q ss_pred CeEEEEeCCCccCC
Q psy2511 28 NYSVMFYDRGHTCW 41 (80)
Q Consensus 28 ~~~~~~y~~G~~Cw 41 (80)
.+...+|.||++|+
T Consensus 50 ~W~~g~~~dGt~C~ 63 (120)
T PF07771_consen 50 GWDYGFYGDGTPCF 63 (120)
T ss_pred ceEEEEecCCCccc
Confidence 45667899999995
No 26
>PRK14644 hypothetical protein; Provisional
Probab=21.83 E-value=49 Score=22.19 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=18.8
Q ss_pred CcEEEecCCCCcEEEEEEecccC
Q psy2511 58 NELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 58 ~~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
..++.+.+|-.-.|.++|+||-+
T Consensus 49 s~~LD~~d~i~~~Y~LEVSSPGl 71 (136)
T PRK14644 49 SDFIDNLSVEFDFDSLDISSPGF 71 (136)
T ss_pred HHHhccccCCCCCeEEEEECCCC
Confidence 34577888888999999999953
No 27
>PF14692 DUF4462: Domain of unknown function (DUF4462)
Probab=21.82 E-value=31 Score=17.63 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.4
Q ss_pred ccCCCCCCceEEEEEEcCCC
Q psy2511 38 HTCWNGPQRTTHVRIKCGLE 57 (80)
Q Consensus 38 ~~CwnG~~Rst~V~l~Cg~~ 57 (80)
-.+||--+|.-.|.+.|-+.
T Consensus 5 r~~WN~LpRag~vGigcqeq 24 (28)
T PF14692_consen 5 RFNWNWLPRAGSVGIGCQEQ 24 (28)
T ss_pred ccccccCcccccccccceee
Confidence 35799999999999999764
No 28
>KOG3821|consensus
Probab=21.03 E-value=48 Score=27.57 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=11.8
Q ss_pred EEeCCCccCCCCCCce
Q psy2511 32 MFYDRGHTCWNGPQRT 47 (80)
Q Consensus 32 ~~y~~G~~CwnG~~Rs 47 (80)
..=++.+.||||..|.
T Consensus 408 ~~a~~e~~CWNG~~~g 423 (563)
T KOG3821|consen 408 AGASNEERCWNGTGVG 423 (563)
T ss_pred ccccCCCcccCCcccc
Confidence 3447889999998554
No 29
>PRK14646 hypothetical protein; Provisional
Probab=20.74 E-value=49 Score=22.58 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=19.0
Q ss_pred CcEEEecCCCCcEEEEEEecccC
Q psy2511 58 NELISVTEPNRCEYLFEFLTPAA 80 (80)
Q Consensus 58 ~~l~sv~Eps~C~Y~~~~~TP~a 80 (80)
..++.+.+|-.-.|.++|+||-+
T Consensus 63 s~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 63 SEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHhCcCCCCCCCeEEEEcCCCC
Confidence 34578889988999999999953
Done!