RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2511
         (80 letters)



>gnl|CDD|205196 pfam13015, PRKCSH_1, Glucosidase II beta subunit-like protein.  The
           sequences found in this family are similar to a region
           found in the beta-subunit of glucosidase II, which is
           also known as protein kinase C substrate 80K-H (PRKCSH).
           The enzyme catalyzes the sequential removal of two
           alpha-1,3-linked glucose residues in the second step of
           N-linked oligosaccharide processing. The beta subunit is
           required for the solubility and stability of the
           heterodimeric enzyme, and is involved in retaining the
           enzyme within the endoplasmic reticulum. The
           beta-subunit confers substrate specificity for di- and
           monoglucosylated glycans on the glucose-trimming
           activity of the alpha-subunit.
          Length = 154

 Score = 74.5 bits (183), Expect = 8e-19
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 31  VMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEPNRCEYLFEFLTPAA 80
            ++Y+ G  CWNGP R+  V ++CG  NEL+SV+EP +CEYLF   +PAA
Sbjct: 78  KLYYENGAKCWNGPHRSAIVEVECGDVNELVSVSEPEKCEYLFVVKSPAA 127


>gnl|CDD|224907 COG1996, RPC10, DNA-directed RNA polymerase, subunit RPC10
          (contains C4-type Zn-finger) [Transcription].
          Length = 49

 Score = 27.7 bits (62), Expect = 0.15
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 52 IKCGLENELISVTEPNRCEY 71
           +CG E EL   T   RC Y
Sbjct: 10 ARCGREVELDQETRGIRCPY 29


>gnl|CDD|219639 pfam07915, PRKCSH, Glucosidase II beta subunit-like protein.  The
          sequences found in this family are similar to a region
          found in the beta-subunit of glucosidase II, which is
          also known as protein kinase C substrate 80K-H
          (PRKCSH). The enzyme catalyzes the sequential removal
          of two alpha-1,3-linked glucose residues in the second
          step of N-linked oligosaccharide processing. The beta
          subunit is required for the solubility and stability of
          the heterodimeric enzyme, and is involved in retaining
          the enzyme within the endoplasmic reticulum. Mutations
          in the gene coding for PRKCSH have been found to be
          involved in the development of autosomal dominant
          polycystic liver disease (ADPLD), but the precise role
          the protein has in the pathogenesis of this disease is
          unknown. This family also includes an ER sensor for
          misfolded glycoproteins and is therefore likely to be a
          generic sugar binding domain.
          Length = 73

 Score = 28.3 bits (63), Expect = 0.16
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 15/50 (30%)

Query: 6  QRPKNGGAETKLGNWGKWLEDSN---------------YSVMFYDRGHTC 40
          +  K   +   LG +  W E +                Y  M Y  G  C
Sbjct: 24 ESRKECCSSYSLGRFKSWAESTVSKWTKTDRDENGVQRYISMIYGNGTKC 73


>gnl|CDD|221066 pfam11300, DUF3102, Protein of unknown function (DUF3102).  This
          family of proteins has no known function.
          Length = 130

 Score = 26.2 bits (58), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 6  QRPKNGGAETKLGNWGKWLEDS-NYS 30
          +R K   A    G WGKWL++S +YS
Sbjct: 30 RRLKEAKALLPHGEWGKWLKESVSYS 55


>gnl|CDD|109916 pfam00878, CIMR, Cation-independent mannose-6-phosphate receptor
          repeat.  The cation-independent mannose-6-phosphate
          receptor contains 15 copies of a repeat.
          Length = 145

 Score = 24.7 bits (54), Expect = 4.6
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 43 GPQRTTHVRIKCG---LENELISVTEPNRCEYLFEFLTPAA 80
          G QR T +   C         + + E   C Y FE+ T  A
Sbjct: 1  GFQRMTVINFVCNDTAYPGAPVFLGEVIDCTYFFEWHTAYA 41


>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of
          glycosyl hydrolase family 16.  Xyloglucan
          endotransglycosylases (XETs) cleave and religate
          xyloglucan polymers in plant cell walls via a
          transglycosylation mechanism. Xyloglucan is a soluble
          hemicellulose with a backbone of beta-1,4-linked
          glucose units, partially substituted with
          alpha-1,6-linked xylopyranose branches. It binds
          noncovalently to cellulose, cross-linking the adjacent
          cellulose microfibrils, giving it a key structural role
          as a matrix polymer. Therefore, XET plays an important
          role in all plant processes that require cell wall
          remodeling.
          Length = 263

 Score = 24.5 bits (54), Expect = 7.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)

Query: 60 LISVTEPNRCEYLFEFL 76
          L S    N  E  FEFL
Sbjct: 71 LSSQGPDNHDEIDFEFL 87


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.134    0.443 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,783,910
Number of extensions: 260121
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 7
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)