RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2511
(80 letters)
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA
MAN; 2.10A {Homo sapiens}
Length = 124
Score = 66.4 bits (161), Expect = 4e-16
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 19/94 (20%)
Query: 6 QRPKNGGAETKLGNWGKWLEDSN-------------YSVMFYDRGHTC-WNGPQRTTHVR 51
+ + G LG + + + Y Y G C NG R VR
Sbjct: 29 EDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGRPREAEVR 88
Query: 52 IKCG-----LENELISVTEPNRCEYLFEFLTPAA 80
C + + V EP C Y+ TP
Sbjct: 89 FLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRL 122
>2kva_A Cation-independent mannose-6-phosphate receptor; transport,
lysosome, sugar binding, glyco membrane, phosphoprotein,
transmembrane, disulfide bond; NMR {Bos taurus} PDB:
2kvb_A
Length = 148
Score = 48.5 bits (115), Expect = 5e-09
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 5 SQRPKNGGAETKLGNWGKWLEDSN-YSVMFYDRGHTCWNGPQ--RTTHVRIKCGLENEL- 60
Q ++ LG L + + Y G N + R T + C + +
Sbjct: 66 CQVSRSDRKSWNLGRSNAKLSYYDGMIQLTYRDGTPYNNEKRTPRATLITFLCDRDAGVG 125
Query: 61 -ISVTEPNRCEYLFEFLTPAA 80
E + Y F + T A
Sbjct: 126 FPEYQEEDNSTYNFRWYTSYA 146
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane,
lysosome, transport, beta barrel, phosphorylation,
fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A*
2v5n_A*
Length = 627
Score = 46.2 bits (108), Expect = 9e-08
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 2 NKTSQRPKNGGAETKLGNWGKW--LEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENE 59
+ R G LG + V+ Y +G+ C ++ + + C
Sbjct: 535 RASICRRTTTGDVQVLGLVHTQKLGVIGDKVVVTYSKGYPCGGNKTASSVIELTCTKTVG 594
Query: 60 L--ISVTEPNRCEYLFEFLTPAA 80
+ + C Y F + + AA
Sbjct: 595 RPAFKRFDIDSCTYYFSWDSRAA 617
Score = 30.4 bits (67), Expect = 0.044
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 31 VMFYDRGHTCWNGPQ--RTTHVRIKC--GLENELISVTEPNRCEYLFEFLTPAA 80
+ ++ C T+ + C G+ + + C+++FE+ TP
Sbjct: 234 YLNFESSTPCLADKHFNYTSLIAFHCKRGVSMGTPKLLRTSECDFVFEWETPVV 287
Score = 29.6 bits (65), Expect = 0.082
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 31 VMFYDRGHTCWNGP--QRTTHVRIKCGLE-----NELISVTEPNRCEYLFEFLTPAA 80
+ Y G C + + + C E ++ + C F + TP A
Sbjct: 82 QLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLA 138
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P
receptor, CI-MPR; P-lectin, protein transport,S binding
protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP:
b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Length = 432
Score = 43.7 bits (102), Expect = 8e-07
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 26 DSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTEP-----NRCEYLFEFLTPAA 80
+ Y G C +G QR + + +C P C Y F + T A
Sbjct: 371 SDGDLTLIYFGGEECSSGFQRMSVINFECNQTAGNNGRGAPVFTGEVDCTYFFTWDTKYA 430
Score = 38.3 bits (88), Expect = 6e-05
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 24 LEDSNYSVMFYDRGHTCW-NGPQRTTHVRIKCGLENELISVTEPNRCEYLFEFLTPAA 80
L+ ++ S++ ++ C + + + CG C + FE+ T AA
Sbjct: 65 LKTASRSLLEFNTTVNCKQQNHKIQSSITFLCGKTLGTPEFVTATDCVHYFEWRTTAA 122
Score = 28.3 bits (62), Expect = 0.25
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 42 NGPQRTTHVRIKCGLENE---LISVTEPNRCEYLFEFLTPAA 80
+G + C E + +T + C + E++T A
Sbjct: 238 DGHSPAVTITFVCPSERREGTIPKLTAKSNCRFEIEWVTEYA 279
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic
imprinting, insulin-like growth factor 2, mannose 6
receptor, protein evolution; NMR {Gallus gallus}
Length = 154
Score = 38.1 bits (88), Expect = 5e-05
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 1 MNKTSQRPKNGGAETKLGNWGKWLE-DSNYSVMFYDRGHTCWNGP--QRTTHVRIKCGLE 57
N + +G G K L + + Y+ G C + ++ C +
Sbjct: 54 ANGAAVCITDGPKTLNAGKLSKTLTYEDQVLKLVYEDGDPCPTDLKMKHKSYFSFVCKSD 113
Query: 58 -----NELISVTEPNRCEYLFEFLTPAA 80
+ + C F + T A
Sbjct: 114 AGDDSQPVFLSFDEQTCTSYFSWHTSLA 141
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate
receptor, imprinting, protein evolution, signaling
protein; NMR {Monodelphis domestica}
Length = 151
Score = 37.7 bits (87), Expect = 7e-05
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 19 NWGKWLEDSNYS----VMFYDRGHTCW--NGPQRTTHVRIKCGLENE-----LISVTEPN 67
N G W Y + YD G C N + + + C ++ + +
Sbjct: 66 NAGSWNSQLMYVDQVLQLVYDDGAPCPSKNALKYKSVISFVCTHDSGANNKPVFVSLDKQ 125
Query: 68 RCEYLFEFLTPAA 80
C F + TP A
Sbjct: 126 TCTLYFSWHTPLA 138
>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like
growth factor, transport, beta barrel; 1.4A {Homo
sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D
2l29_A 2l2a_A
Length = 143
Score = 35.0 bits (80), Expect = 6e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 31 VMFYDRGHTCW--NGPQRTTHVRIKCGLENE-----LISVTEPNRCEYLFEFLTPAA 80
+ Y G C +G + + C E ++ + C F + TP A
Sbjct: 82 QLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFSWHTPLA 138
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin,
lectin, glycop lysosome, membrane, transmembrane,
transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP:
b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A*
3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A*
Length = 154
Score = 31.6 bits (71), Expect = 0.010
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 1 MNKTSQRPKNGG--AETKLGNWGKWLEDSNYSVMFYDRGHTCWNG---PQRTTHVRIKC- 54
+ K++ + G ET++ W+ ++ Y G N QR V I C
Sbjct: 67 IQKSNGKETVVGRFNETQIFQGSNWI------MLIYKGGDEYDNHCGREQRRAVVMISCN 120
Query: 55 ------GLENELISVTEPNRCEYLFEFLTPAA 80
+ C YLFE + A
Sbjct: 121 RHTLADNFNPVSEERGKVQDCFYLFEMDSSLA 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 0.70
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 30/88 (34%)
Query: 2 NKTSQRPKNGGAETKLGNWGKWLEDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELI 61
N + GG + GK + + NYS M ++ T +G +T +
Sbjct: 1668 NPVNLTIHFGGEK------GKRIRE-NYSAMIFE---TIVDGKLKTEKI---------FK 1708
Query: 62 SVTEPNRCEYLFE------FLT----PA 79
+ E + Y F T PA
Sbjct: 1709 EINEHST-SYTFRSEKGLLSATQFTQPA 1735
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 26.4 bits (59), Expect = 0.99
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 20 WGKWLEDSNYSVMFYDRGH-------TCWNGPQRTTHVRIKCGLENELISVTE 65
W + ED Y +F RG R G++ E + ++
Sbjct: 89 WEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQ 141
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic
resolution, double layered particle, de novo,
infectious, icosah virus; HET: NAG; 3.80A {Simian
rotavirus A} PDB: 1kri_A
Length = 776
Score = 24.3 bits (52), Expect = 6.3
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 7 RPKNGGAETKLGNWGKWLEDSNYSVMFYDRGHTCWNGPQRTTHV 50
R K + K G G + ++ Y +T +G + T H
Sbjct: 274 RFKFASSIVKSGGLGYKWSEISFKPANYQYTYT-RDGEEVTAHT 316
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP:
d.109.1.1 PDB: 1svr_A 1svy_A
Length = 114
Score = 23.2 bits (50), Expect = 9.8
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 22 KWLEDSNYSVMFYDRGHTC--WNGPQRTTHVRIKCGLENELISVTEPNRCE 70
++ D G T +NG + + + K I +
Sbjct: 32 ATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPK 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.443
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,172,006
Number of extensions: 49442
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 16
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)