RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2511
         (80 letters)



>d2rl8a1 b.64.1.1 (A:4-154) Cation-dependent mannose 6-phosphate
           receptor, extracytoplasmic domain {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 151

 Score = 58.6 bits (141), Expect = 3e-13
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 6   QRPKNGGAETKLGNWGKWL--EDSNYSVMFYDRGHTCWN---GPQRTTHVRIKCGLENE- 59
           Q  K+ G ET +G + +    + SN+ ++ Y  G    N     QR   V I C      
Sbjct: 63  QIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLA 122

Query: 60  ------LISVTEPNRCEYLFEFLTPAA 80
                      +   C YLFE  +  A
Sbjct: 123 DNFNPVSEERGKVQDCFYLFEMDSSLA 149


>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 152

 Score = 52.5 bits (125), Expect = 6e-11
 Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 8   PKNGGAETKLGNWGKWL--EDSNYSVMFYDRGHTCWNGPQRTTHVRIKCGLENELISVTE 65
             +       G               + Y  G  C +G QR + +  +C           
Sbjct: 71  KADSTQVKVAGRPQNLTLRYSDGDLTLIYFGGEECSSGFQRMSVINFECNQTAGNNGRGA 130

Query: 66  P-----NRCEYLFEFLTPAA 80
           P       C Y F + T  A
Sbjct: 131 PVFTGEVDCTYFFTWDTKYA 150


>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 123

 Score = 44.3 bits (104), Expect = 5e-08
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 16  KLGNWG-KWLEDSNYSVMFYDRGHTCWNGPQR-TTHVRIKCGLENELISVTEPNRCEYLF 73
              + G   L+ ++ S++ ++    C     +  + +   CG             C + F
Sbjct: 50  SFHSVGDSLLKTASRSLLEFNTTVNCKQQNHKIQSSITFLCGKTLGTPEFVTATDCVHYF 109

Query: 74  EFLTPAA 80
           E+ T AA
Sbjct: 110 EWRTTAA 116


>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 133

 Score = 44.0 bits (103), Expect = 9e-08
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 8/78 (10%)

Query: 11  GGAETKLGNWGKWLE-DSNYSVMFYDRGHTCW--NGPQRTTHVRIKCGLE-----NELIS 62
           G     +G   K L        + Y  G  C   +G    + +   C  E       ++ 
Sbjct: 54  GQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLI 113

Query: 63  VTEPNRCEYLFEFLTPAA 80
             +   C   F + TP A
Sbjct: 114 SLDKQTCTLFFSWHTPLA 131


>d1q25a2 b.64.1.1 (A:130-280) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 151

 Score = 34.8 bits (79), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 24  LEDSNYSVMFYDRGHTCW----NGPQRTTHVRIKCG---LENELISVTEPNRCEYLFEFL 76
           L  ++  V+ Y +         +G      +   C     E  +  +T  + C +  E++
Sbjct: 87  LVSNDRLVLSYVKEGAGQPDFCDGHSPAVTITFVCPSERREGTIPKLTAKSNCRFEIEWV 146

Query: 77  TPAA 80
           T  A
Sbjct: 147 TEYA 150


>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus
          rotavirus [TaxId: 10969]}
          Length = 270

 Score = 25.9 bits (57), Expect = 0.52
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 7  RPKNGGAETKLGNWGKWLEDSNYSVMFYDRGHTCWNGPQRTTHV 50
          R K   +  K G  G    + ++    Y   +T  +G + T H 
Sbjct: 22 RFKFASSIVKSGGLGYKWSEISFKPANYQYTYT-RDGEEVTAHT 64


>gi|218296413|ref|ZP_03497156.1|(69-154:157) translation
          initiation factor IF-3 [Thermus aquaticus Y51MC23] 
          gi|218243207|gb|EED09738.1| translation initiation
          factor IF-3 [Thermus aquaticus Y51MC23]  E=2e-35
          s/c=1.74 id=82% cov=101%
          Length = 86

 Score = 23.9 bits (52), Expect = 1.8
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 14 ETKLGNWGKWLEDSN---YSVMFYDR 36
          +TKL +  ++LE+ +    ++MF  R
Sbjct: 17 QTKLNHIKRFLEEGHKVKVTIMFRGR 42


>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 324

 Score = 23.1 bits (48), Expect = 4.7
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 10 NGGAETKLGNWGKWLEDSNYSVMFYDRGHTCWNGPQRTTHVRIKC 54
          NG +ET LG+ G  L  S   V    +    +    +   VR + 
Sbjct: 44 NGQSETILGDLGLGLGRSGCKVKIATKAAPMFGKTLKPADVRFQL 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.443 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,867
Number of extensions: 11195
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 10
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)