Query psy2512
Match_columns 115
No_of_seqs 107 out of 403
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:05:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12999 PRKCSH-like: Glucosid 100.0 9.6E-37 2.1E-41 234.9 5.4 82 20-101 15-99 (176)
2 KOG2397|consensus 99.9 1.3E-25 2.9E-30 193.3 5.8 93 9-101 11-105 (480)
3 PF12999 PRKCSH-like: Glucosid 99.1 2.2E-11 4.8E-16 94.4 2.5 44 38-85 74-123 (176)
4 KOG2397|consensus 98.7 4.4E-09 9.6E-14 91.6 1.9 48 37-87 79-130 (480)
5 cd00112 LDLa Low Density Lipop 98.6 2.9E-08 6.4E-13 58.1 2.4 32 38-70 3-34 (35)
6 PF00057 Ldl_recept_a: Low-den 98.6 5E-08 1.1E-12 58.0 3.3 32 38-70 5-36 (37)
7 smart00192 LDLa Low-density li 98.4 1.5E-07 3.2E-12 54.3 2.6 29 39-68 5-33 (33)
8 PF00057 Ldl_recept_a: Low-den 95.2 0.015 3.3E-07 34.3 2.1 26 73-102 2-27 (37)
9 cd00112 LDLa Low Density Lipop 95.2 0.011 2.3E-07 34.4 1.2 25 74-102 1-25 (35)
10 smart00192 LDLa Low-density li 93.8 0.036 7.7E-07 31.6 1.4 25 74-102 2-26 (33)
11 KOG1215|consensus 93.6 0.099 2.1E-06 47.5 4.4 73 26-102 204-284 (877)
12 KOG1215|consensus 89.7 0.2 4.3E-06 45.6 1.9 34 38-71 140-174 (877)
13 PF10905 DUF2695: Protein of u 48.7 7.1 0.00015 25.1 0.4 14 50-63 36-49 (53)
14 PF07172 GRP: Glycine rich pro 48.0 13 0.00027 26.2 1.6 13 4-16 6-18 (95)
15 smart00004 NL Domain found in 21.6 52 0.0011 19.7 1.0 9 53-61 15-23 (38)
16 PF15240 Pro-rich: Proline-ric 20.5 68 0.0015 25.4 1.7 16 1-16 1-16 (179)
17 COG5567 Predicted small peripl 20.4 87 0.0019 20.7 1.9 28 2-32 6-33 (58)
No 1
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=100.00 E-value=9.6e-37 Score=234.93 Aligned_cols=82 Identities=48% Similarity=0.759 Sum_probs=77.5
Q ss_pred ccCCCccCCcccccccCC--CCcEEeCCCCce-eccCcccCCcCCCCCCCCCCCCCCCCCCceecccCCceeeeeeccce
Q psy2512 20 DVLRPRGVSLMRASLYQP--ASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKT 96 (115)
Q Consensus 20 ~~~~~rGv~p~~~~~Y~~--~g~F~C~~gs~~-I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~g~~p~~Ipssrv 96 (115)
.+.++|||+|+++++|++ ++.|+|++++.. |++++||||||||+||||||||+||++++|||+|+||+|++||+++|
T Consensus 15 ~~~~~~GV~p~~~~~Y~~~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~V 94 (176)
T PF12999_consen 15 ASSRIRGVSPSDQHLYEPSENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRV 94 (176)
T ss_pred ccCCCCCCCHHHHHHcCCCCCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhh
Confidence 478999999999999997 579999998655 99999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy2512 97 WNSSS 101 (115)
Q Consensus 97 ~DG~~ 101 (115)
.||+=
T Consensus 95 nDGIC 99 (176)
T PF12999_consen 95 NDGIC 99 (176)
T ss_pred cCCcC
Confidence 99984
No 2
>KOG2397|consensus
Probab=99.92 E-value=1.3e-25 Score=193.30 Aligned_cols=93 Identities=40% Similarity=0.615 Sum_probs=80.0
Q ss_pred HHHHHHhhhccccCCCccCC--cccccccCCCCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceecccCCc
Q psy2512 9 VLFSSIWLTSSDVLRPRGVS--LMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTR 86 (115)
Q Consensus 9 ~l~~~~~~~~~~~~~~rGv~--p~~~~~Y~~~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~g~ 86 (115)
+|+++...++....+.+||+ ..++++|+++..|+|++++..|+++++||+||||.||||||||+||+|+.|||.|.||
T Consensus 11 ~ll~sp~~aa~~~~~~~~v~~~~~~~~~y~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~ 90 (480)
T KOG2397|consen 11 ALLASPLGAAKQLRKDWGVALSIENLYLYDASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGH 90 (480)
T ss_pred HhhhcchhhhhccccccccccccccccccccccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCC
Confidence 33444444445566666654 5588888889999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccceecCCC
Q psy2512 87 RFLIQISAKTWNSSS 101 (115)
Q Consensus 87 ~p~~Ipssrv~DG~~ 101 (115)
+|.+|++++|-||+=
T Consensus 91 ~p~~i~ssrV~DGIC 105 (480)
T KOG2397|consen 91 QPKYIPSSRVNDGIC 105 (480)
T ss_pred CceeeechhccCccc
Confidence 999999999999973
No 3
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=99.13 E-value=2.2e-11 Score=94.38 Aligned_cols=44 Identities=45% Similarity=0.771 Sum_probs=37.9
Q ss_pred CCcEEeCC-C--CceeccCcccCCcCC---CCCCCCCCCCCCCCCCceecccCC
Q psy2512 38 ASEFTCFD-G--SLTIPFSYVNDDYCD---CQDSSDEPGTSACPNGTFHSHLLT 85 (115)
Q Consensus 38 ~g~F~C~~-g--s~~I~~s~vNDg~CD---C~DGSDEpgt~aC~~~~FyC~n~g 85 (115)
+++|||.| | +..||.++||||+|| |+||||| +...|+| .|.+.+
T Consensus 74 ~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE-~~~~C~N---~C~e~~ 123 (176)
T PF12999_consen 74 NGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE-SGGKCPN---TCAELG 123 (176)
T ss_pred CceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC-CCCCCcc---HHHHHH
Confidence 47999999 5 578999999999999 9999999 4457999 887654
No 4
>KOG2397|consensus
Probab=98.72 E-value=4.4e-09 Score=91.63 Aligned_cols=48 Identities=46% Similarity=0.761 Sum_probs=41.0
Q ss_pred CCCcEEeCC-C--CceeccCcccCCcCCCCCCCCCCCC-CCCCCCceecccCCce
Q psy2512 37 PASEFTCFD-G--SLTIPFSYVNDDYCDCQDSSDEPGT-SACPNGTFHSHLLTRR 87 (115)
Q Consensus 37 ~~g~F~C~~-g--s~~I~~s~vNDg~CDC~DGSDEpgt-~aC~~~~FyC~n~g~~ 87 (115)
++|+|||.| | +..|+.++||||+|||+|||||..+ -.|+| .|...|..
T Consensus 79 pngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c~n---tC~e~gR~ 130 (480)
T KOG2397|consen 79 PNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDCPN---TCIELGRA 130 (480)
T ss_pred CCCceeeeecCCCceeeechhccCcccccccCCCCccCCCCCcc---hHHHHHHH
Confidence 379999999 5 6799999999999999999999877 48988 78766543
No 5
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.60 E-value=2.9e-08 Score=58.07 Aligned_cols=32 Identities=47% Similarity=0.762 Sum_probs=28.7
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.++ .+||.+++||++-||+|||||..
T Consensus 3 ~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~ 34 (35)
T cd00112 3 PNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN 34 (35)
T ss_pred CCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence 468999984 59999999999999999999963
No 6
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.59 E-value=5e-08 Score=58.04 Aligned_cols=32 Identities=47% Similarity=0.780 Sum_probs=29.5
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.++. +|+..++||++-||.|||||.+
T Consensus 5 ~~~f~C~~~~-CI~~~~~CDg~~DC~dgsDE~~ 36 (37)
T PF00057_consen 5 PGEFRCGNGQ-CIPKSWVCDGIPDCPDGSDEQN 36 (37)
T ss_dssp TTEEEETTSS-EEEGGGTTSSSCSSSSSTTTSS
T ss_pred CCeeEcCCCC-EEChHHcCCCCCCCCCCccccc
Confidence 5789999987 9999999999999999999953
No 7
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.44 E-value=1.5e-07 Score=54.25 Aligned_cols=29 Identities=52% Similarity=0.920 Sum_probs=26.9
Q ss_pred CcEEeCCCCceeccCcccCCcCCCCCCCCC
Q psy2512 39 SEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68 (115)
Q Consensus 39 g~F~C~~gs~~I~~s~vNDg~CDC~DGSDE 68 (115)
++|+|.++. +||..++||++-||.|||||
T Consensus 5 ~~f~C~~~~-Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 5 GEFQCDNGR-CIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CeEECCCCC-EECchhhCCCcCcCcCCCCC
Confidence 489998766 99999999999999999999
No 8
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=95.21 E-value=0.015 Score=34.30 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.|+.+.|.|.++ .+|+..+++||+..
T Consensus 2 ~C~~~~f~C~~~----~CI~~~~~CDg~~D 27 (37)
T PF00057_consen 2 TCPPGEFRCGNG----QCIPKSWVCDGIPD 27 (37)
T ss_dssp SSSTTEEEETTS----SEEEGGGTTSSSCS
T ss_pred cCcCCeeEcCCC----CEEChHHcCCCCCC
Confidence 588999999988 49999999999864
No 9
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=95.17 E-value=0.011 Score=34.37 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.7
Q ss_pred CCCCceecccCCceeeeeeccceecCCCC
Q psy2512 74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
|+..+|.|.++ .+|+.++++||+..
T Consensus 1 C~~~~f~C~~~----~Ci~~~~~CDg~~D 25 (35)
T cd00112 1 CPPNEFRCANG----RCIPSSWVCDGEDD 25 (35)
T ss_pred CCCCeEEcCCC----CeeCHHHcCCCccC
Confidence 66789999985 89999999999864
No 10
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=93.83 E-value=0.036 Score=31.60 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.9
Q ss_pred CCCCceecccCCceeeeeeccceecCCCC
Q psy2512 74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
|+...|.|.++ .+||..+++||+..
T Consensus 2 C~~~~f~C~~~----~Ci~~~~~Cdg~~d 26 (33)
T smart00192 2 CPPGEFQCDNG----RCIPLSWVCDGVDD 26 (33)
T ss_pred CCCCeEECCCC----CEECchhhCCCcCc
Confidence 66679999966 69999999999853
No 11
>KOG1215|consensus
Probab=93.56 E-value=0.099 Score=47.53 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=54.9
Q ss_pred cCCcccccccCCC----CcEEeCCCCceeccCcccCCcCCCCCCCCCC--CC--CCCCCCceecccCCceeeeeecccee
Q psy2512 26 GVSLMRASLYQPA----SEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP--GT--SACPNGTFHSHLLTRRFLIQISAKTW 97 (115)
Q Consensus 26 Gv~p~~~~~Y~~~----g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEp--gt--~aC~~~~FyC~n~g~~p~~Ipssrv~ 97 (115)
|..+.....|... ..+.|..+..+|..++.+|+.-||.|++||- .. .+|....|.|.+. .+++..+.+
T Consensus 204 ~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~ 279 (877)
T KOG1215|consen 204 DYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG----DCSDRQKLC 279 (877)
T ss_pred ccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC----CCccceEEe
Confidence 4455555555442 5788988778999999999999999999994 11 4677778999776 577777778
Q ss_pred cCCCC
Q psy2512 98 NSSSQ 102 (115)
Q Consensus 98 DG~~~ 102 (115)
||...
T Consensus 280 ~g~~d 284 (877)
T KOG1215|consen 280 DGDLD 284 (877)
T ss_pred cCccC
Confidence 88764
No 12
>KOG1215|consensus
Probab=89.73 E-value=0.2 Score=45.60 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=28.8
Q ss_pred CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCCC
Q psy2512 38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPGT 71 (115)
Q Consensus 38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpgt 71 (115)
...|.|..+ .++||..+.||+-.||.||+||...
T Consensus 140 ~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~ 174 (877)
T KOG1215|consen 140 LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNC 174 (877)
T ss_pred CCCCCCcCccccCCCCceeCCCCCccccchhhhcc
Confidence 357888853 5699999999999999999999764
No 13
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=48.73 E-value=7.1 Score=25.15 Aligned_cols=14 Identities=36% Similarity=0.982 Sum_probs=10.4
Q ss_pred eccCcccCCcCCCC
Q psy2512 50 IPFSYVNDDYCDCQ 63 (115)
Q Consensus 50 I~~s~vNDg~CDC~ 63 (115)
|+.=+-|.|||||+
T Consensus 36 l~~l~~nGg~CDCE 49 (53)
T PF10905_consen 36 LEWLRENGGYCDCE 49 (53)
T ss_pred HHHHHHcCCCccee
Confidence 34446789999996
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=47.96 E-value=13 Score=26.21 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHhh
Q psy2512 4 FVTLGVLFSSIWL 16 (115)
Q Consensus 4 ~~~~~~l~~~~~~ 16 (115)
||||.+||++.+.
T Consensus 6 ~llL~l~LA~lLl 18 (95)
T PF07172_consen 6 FLLLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444433
No 15
>smart00004 NL Domain found in Notch and Lin-12. The Notch protein is essential for the proper differentiation of the Drosophila ectoderm. This protein contains 3 NL domains.
Probab=21.58 E-value=52 Score=19.74 Aligned_cols=9 Identities=33% Similarity=0.697 Sum_probs=6.5
Q ss_pred CcccCCcCC
Q psy2512 53 SYVNDDYCD 61 (115)
Q Consensus 53 s~vNDg~CD 61 (115)
++..|++||
T Consensus 15 ~~~~dg~CD 23 (38)
T smart00004 15 DKFGDGVCD 23 (38)
T ss_pred hhhCCCccc
Confidence 467788887
No 16
>PF15240 Pro-rich: Proline-rich
Probab=20.50 E-value=68 Score=25.37 Aligned_cols=16 Identities=13% Similarity=-0.168 Sum_probs=8.4
Q ss_pred CchhHHHHHHHHHHhh
Q psy2512 1 MSGFVTLGVLFSSIWL 16 (115)
Q Consensus 1 ~~~~~~~~~l~~~~~~ 16 (115)
|.-+||..+|||.+++
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 4444444456665555
No 17
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=20.38 E-value=87 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHhhhccccCCCccCCcccc
Q psy2512 2 SGFVTLGVLFSSIWLTSSDVLRPRGVSLMRA 32 (115)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~rGv~p~~~ 32 (115)
++++++.+|++.+.+ -.+.+-.++|++.
T Consensus 6 ~s~~ala~l~sLA~C---G~KGPLy~Ppadk 33 (58)
T COG5567 6 KSLLALATLFSLAGC---GLKGPLYFPPADK 33 (58)
T ss_pred HHHHHHHHHHHHHhc---ccCCCccCChhhc
Confidence 456677777755544 3677777777665
Done!