Query psy2512
Match_columns 115
No_of_seqs 107 out of 403
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:06:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fcw_B LDL receptor, low-densi 99.5 3.2E-14 1.1E-18 95.5 3.8 59 38-101 5-65 (80)
2 2fyj_A Low-density lipoprotein 99.4 1.5E-13 5.3E-18 92.1 5.7 60 38-102 7-70 (82)
3 1n7d_A LDL receptor, low-densi 98.9 4.7E-10 1.6E-14 96.6 3.8 61 38-102 49-112 (699)
4 2kny_A LRP-1, linker, APO-E; l 98.9 2.5E-10 8.7E-15 76.7 1.0 57 38-96 11-73 (80)
5 2xrc_A Human complement factor 98.8 2.2E-09 7.6E-14 91.1 4.3 59 39-102 207-265 (565)
6 1n7d_A LDL receptor, low-densi 98.8 2.3E-09 7.8E-14 92.3 3.2 60 38-102 90-151 (699)
7 2jm4_A Relaxin receptor 1; LDL 98.8 5.3E-09 1.8E-13 62.6 3.5 33 38-70 9-41 (43)
8 1cr8_A Protein (LOW density li 98.8 5.9E-09 2E-13 62.2 3.5 33 38-70 6-38 (42)
9 2i1p_A Low-density lipoprotein 98.7 2E-09 6.7E-14 65.9 1.3 33 38-70 9-41 (48)
10 2knx_A Prolow-density lipoprot 98.7 4.7E-09 1.6E-13 65.1 2.8 38 38-75 9-46 (50)
11 1jrf_A TVA LDL-A module, subgr 98.7 3E-09 1E-13 64.5 1.8 33 38-70 7-43 (47)
12 1ajj_A LR5, low-density lipopr 98.7 7.9E-09 2.7E-13 60.0 2.9 32 38-70 4-35 (37)
13 3dpr_E LDL-receptor class A 3; 98.7 9.7E-09 3.3E-13 60.4 2.9 33 38-70 3-36 (39)
14 3a7q_B Low-density lipoprotein 98.6 2E-08 6.8E-13 60.4 3.5 32 38-70 10-41 (44)
15 1d2l_A Lipoprotein receptor re 98.6 2.1E-08 7.1E-13 61.0 3.6 33 38-71 8-40 (45)
16 3m0c_C LDL receptor, low-densi 98.6 3.6E-09 1.2E-13 93.5 0.0 61 38-102 67-130 (791)
17 3m0c_C LDL receptor, low-densi 98.6 4.3E-09 1.5E-13 93.0 0.0 61 38-101 26-90 (791)
18 1k7b_A Subgroup A ROUS sarcoma 98.6 1.4E-08 4.7E-13 61.7 1.8 33 38-70 9-45 (47)
19 1j8e_A Low-density lipoprotein 98.6 2.1E-08 7.1E-13 60.3 2.2 32 38-70 7-38 (44)
20 2m0p_A Low-density lipoprotein 98.5 1.7E-08 5.8E-13 63.6 1.0 32 38-70 9-40 (52)
21 2fyj_A Low-density lipoprotein 98.3 4.6E-07 1.6E-11 60.4 3.5 32 38-70 48-79 (82)
22 2fcw_B LDL receptor, low-densi 98.2 4.3E-07 1.5E-11 60.6 2.3 31 38-69 44-74 (80)
23 2gtl_O Extracellular hemoglobi 98.2 4.3E-07 1.5E-11 71.1 1.8 45 38-82 57-104 (215)
24 2gtl_N Extracellular hemoglobi 98.0 5.4E-06 1.9E-10 65.4 4.2 46 38-83 55-108 (220)
25 2gtl_M Hemoglobin linker chain 97.9 4.2E-06 1.4E-10 65.6 3.1 32 38-69 56-88 (217)
26 3ojy_A Complement component C8 97.7 2.2E-05 7.5E-10 67.6 4.4 44 39-83 68-112 (554)
27 3ojy_B Complement component C8 97.6 4.1E-05 1.4E-09 65.5 4.4 42 39-84 69-111 (537)
28 2gtl_O Extracellular hemoglobi 97.0 2E-05 6.7E-10 61.7 -3.8 42 57-102 38-81 (215)
29 1jrf_A TVA LDL-A module, subgr 97.0 0.00021 7.1E-09 42.8 1.2 33 70-102 1-34 (47)
30 1j8e_A Low-density lipoprotein 96.6 0.0012 4.2E-08 39.1 2.3 29 70-102 1-29 (44)
31 1cr8_A Protein (LOW density li 96.0 0.0039 1.3E-07 36.6 2.3 27 73-102 3-29 (42)
32 3t5o_A Complement component C6 95.9 0.0036 1.2E-07 56.2 3.0 41 39-83 121-161 (913)
33 1d2l_A Lipoprotein receptor re 95.7 0.0058 2E-07 36.6 2.3 26 73-102 5-30 (45)
34 2jm4_A Relaxin receptor 1; LDL 95.7 0.0051 1.7E-07 36.2 2.0 28 72-102 5-32 (43)
35 2xrc_A Human complement factor 95.5 0.0074 2.5E-07 51.1 3.2 32 38-70 243-274 (565)
36 2knx_A Prolow-density lipoprot 95.4 0.0094 3.2E-07 36.4 2.4 27 72-102 5-32 (50)
37 1ajj_A LR5, low-density lipopr 95.3 0.0081 2.8E-07 34.2 1.9 25 74-102 2-26 (37)
38 2i1p_A Low-density lipoprotein 95.1 0.011 3.9E-07 35.4 2.2 27 73-102 6-32 (48)
39 3a7q_B Low-density lipoprotein 95.1 0.0099 3.4E-07 35.1 1.8 27 72-102 6-32 (44)
40 2m0p_A Low-density lipoprotein 94.6 0.015 5E-07 36.2 1.8 26 73-102 6-31 (52)
41 2kny_A LRP-1, linker, APO-E; l 94.6 0.016 5.5E-07 38.4 2.1 28 72-102 7-34 (80)
42 3dpr_E LDL-receptor class A 3; 94.3 0.015 5E-07 33.5 1.2 27 74-102 1-27 (39)
43 1k7b_A Subgroup A ROUS sarcoma 94.1 0.022 7.4E-07 33.9 1.8 30 73-102 6-36 (47)
44 2gtl_M Hemoglobin linker chain 88.3 0.2 6.7E-06 39.1 1.9 28 71-101 51-79 (217)
45 2gtl_N Extracellular hemoglobi 69.2 2.1 7.2E-05 33.6 1.9 27 73-101 52-78 (220)
46 3ojy_B Complement component C8 53.6 7.7 0.00026 32.9 2.8 22 77-102 69-91 (537)
47 3ojy_A Complement component C8 40.7 17 0.00059 31.0 2.9 25 73-102 65-90 (554)
48 3t3p_B Integrin beta-3; integr 33.9 12 0.00043 31.9 1.0 31 49-82 426-458 (472)
49 3v4v_B Integrin beta-7; cell a 29.4 15 0.0005 31.8 0.7 30 49-82 448-479 (503)
No 1
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.46 E-value=3.2e-14 Score=95.52 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=53.3
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSS 101 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~ 101 (115)
.++|+|.+|. +||.++|||++-||.|||||.++. .|+..+|+|.++ ++||.++++||+.
T Consensus 5 ~~~F~C~~g~-CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~ 65 (80)
T 2fcw_B 5 QAEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDP 65 (80)
T ss_dssp TTEEECTTSC-EEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS----CEEEGGGTTSSSC
T ss_pred CCccCCCCCC-EEeeecccCCcccCCCcccccccccccCCceeeECCCC----CEEecccccCCCc
Confidence 5789999875 999999999999999999998753 688899999986 7999999999985
No 2
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.43 E-value=1.5e-13 Score=92.13 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=52.1
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCC-CCC--CCCC-CCceecccCCceeeeeeccceecCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE-PGT--SACP-NGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDE-pgt--~aC~-~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.++|+|.+|. +||.+++|||+-||.||||| .++ ..|. ..+|+|.|+ ++|+.++++||+.-
T Consensus 7 ~~~f~C~~g~-Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g----~CI~~~~~CDG~~D 70 (82)
T 2fyj_A 7 PNQFSCASGR-CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDND 70 (82)
T ss_dssp TTEEETTSSC-EEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTS----CEEETTCBSSSSBC
T ss_pred CCceEeCCCC-EEeccccCCCcccCCCccccccccccccCCCCCceECCCC----CeEcHHHccCCCCc
Confidence 5789999875 99999999999999999999 554 3684 489999986 79999999999853
No 3
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.92 E-value=4.7e-10 Score=96.57 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=46.0
Q ss_pred CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.+.|.|.++ .++||.+++||+..||.|||||.++. .|+..+|+|.++ ++|+.++++||...
T Consensus 49 ~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~d 112 (699)
T 1n7d_A 49 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRD 112 (699)
T ss_dssp SSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSCC--------CCCTTCSSCC
T ss_pred CCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCCC----CEecHHHcCCCcCc
Confidence 578999886 47899999999999999999998764 688889999876 68999999998753
No 4
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.90 E-value=2.5e-10 Score=76.71 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=43.4
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC---C---CCCCCCceecccCCceeeeeeccce
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG---T---SACPNGTFHSHLLTRRFLIQISAKT 96 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg---t---~aC~~~~FyC~n~g~~p~~Ipssrv 96 (115)
++.|+|.+...+||.+++|||..||.|||||.. + ..|....|.|.+. .-..|+..+.
T Consensus 11 ~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~--~~~ci~~~~~ 73 (80)
T 2kny_A 11 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE--LRVRLASHLR 73 (80)
T ss_dssp SSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHH--HHHHTTTTTT
T ss_pred CCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhH--HHHHHHHHHH
Confidence 678999975569999999999999999999974 2 3577788999873 1134554443
No 5
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.82 E-value=2.2e-09 Score=91.07 Aligned_cols=59 Identities=29% Similarity=0.371 Sum_probs=52.5
Q ss_pred CcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 39 SEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 39 g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.+|.|.++. +|+..++|||.-||.|||||.++..|+...|+|.++ .+|+...++||+..
T Consensus 207 ~~~~C~~~~-ci~~~~~Cdg~~dC~d~sDE~~C~~c~~~~~~C~~~----~C~~~~~~cdG~~d 265 (565)
T 2xrc_A 207 DFFQCVNGK-YISQMKACDGINDCGDQSDELCCKACQGKGFHCKSG----VCIPSQYQCNGEVD 265 (565)
T ss_dssp --CBCTTSC-BCCTTSTTSSSCCSSSSSSSSSBSSCSSSCEEETTT----EEECGGGTTSSSCC
T ss_pred CeeECCCCC-ccCHHHcCCCcccCCCCcccccccccCCCceecCCC----cccCccccCCCccc
Confidence 459998775 999999999999999999999887899999999987 69999999999865
No 6
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.78 E-value=2.3e-09 Score=92.28 Aligned_cols=60 Identities=27% Similarity=0.457 Sum_probs=50.1
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.++|+|.++. +|+.+++||+..||.|||||.++. .|+...|.|.++ ++|+..++|||...
T Consensus 90 ~~~f~C~~g~-Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~d 151 (699)
T 1n7d_A 90 QDEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPD 151 (699)
T ss_dssp SSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSS----CCCCTTSTTCSSCC
T ss_pred cCcEEcCCCC-EecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCC----cccchhcccCCCCc
Confidence 5789998875 999999999999999999998763 698899999876 79999999999863
No 7
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.76 E-value=5.3e-09 Score=62.63 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.++..+||.+++||+.-||.|||||.+
T Consensus 9 ~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~ 41 (43)
T 2jm4_A 9 LGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN 41 (43)
T ss_dssp TTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred CCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence 578999995569999999999999999999974
No 8
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.75 E-value=5.9e-09 Score=62.17 Aligned_cols=33 Identities=42% Similarity=0.683 Sum_probs=29.5
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.+...+||.+++||+.-||.|||||.+
T Consensus 6 ~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~ 38 (42)
T 1cr8_A 6 TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38 (42)
T ss_dssp TTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred CCceEeCCCCeEcChhhcCCCCcCCCCCCcccC
Confidence 578999975569999999999999999999964
No 9
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.74 E-value=2e-09 Score=65.90 Aligned_cols=33 Identities=45% Similarity=0.799 Sum_probs=30.6
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
+++|+|.++..+|+.+++||+.-||.|||||.+
T Consensus 9 ~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~ 41 (48)
T 2i1p_A 9 SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG 41 (48)
T ss_dssp SSSEECSSSSCEECGGGSSSSSCCSSSSHHHHS
T ss_pred CCeeECCCCCEeCCHhhcCCCCCCCCCCccccc
Confidence 578999998679999999999999999999975
No 10
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.73 E-value=4.7e-09 Score=65.12 Aligned_cols=38 Identities=29% Similarity=0.586 Sum_probs=31.9
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACP 75 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~ 75 (115)
+++|+|.+...+||.+++||+.-||.|||||..+..|+
T Consensus 9 ~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~~C~ 46 (50)
T 2knx_A 9 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL 46 (50)
T ss_dssp TTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred CCcEEcCCCCeEcChhhcCCCCCCCCCCCccccccCCC
Confidence 67999974446999999999999999999997654554
No 11
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.73 E-value=3e-09 Score=64.53 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=29.2
Q ss_pred CCcEEeCC----CCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFD----GSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~----gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
+++|+|.+ ...+||.+++||++.||.|||||.+
T Consensus 7 ~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~ 43 (47)
T 1jrf_A 7 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 43 (47)
T ss_dssp CCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred CCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence 67899985 3569999999999999999999964
No 12
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=98.70 E-value=7.9e-09 Score=60.03 Aligned_cols=32 Identities=44% Similarity=0.661 Sum_probs=29.1
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.+|. +|+.+++||+.-||.|||||.+
T Consensus 4 ~~~f~C~~g~-Ci~~~~~CDg~~DC~DgsDE~~ 35 (37)
T 1ajj_A 4 AFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEEN 35 (37)
T ss_dssp TTCEECTTSC-EECGGGTTSSSCCSTTCGGGTT
T ss_pred CCceEcCCCC-eechhhccCCCCCCCCCccccC
Confidence 5789999874 9999999999999999999975
No 13
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.68 E-value=9.7e-09 Score=60.35 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=29.6
Q ss_pred CCcEEeCC-CCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
+++|+|.+ ..++||.+++||+.-||.|||||.+
T Consensus 3 ~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~ 36 (39)
T 3dpr_E 3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN 36 (39)
T ss_dssp TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred CCceecCCCCCCEeCccccCCCcccCcCCccccc
Confidence 56899998 3569999999999999999999975
No 14
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.64 E-value=2e-08 Score=60.36 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=29.2
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.++. +||.+++||+.-||.|||||.+
T Consensus 10 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgSDE~~ 41 (44)
T 3a7q_B 10 KDQFQCRNER-CIPSVWRCDEDDDCLDHSDEDD 41 (44)
T ss_dssp TTEEECTTSC-EEEGGGTTSSSCCSSSSTTTSC
T ss_pred CCceEcCCCC-EeChhhccCCCCCCCCCccccC
Confidence 5789999864 9999999999999999999974
No 15
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.64 E-value=2.1e-08 Score=61.00 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=29.7
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGT 71 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt 71 (115)
.+.|+|.++ .+||.+++|||.-||.|||||...
T Consensus 8 ~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 8 PGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp BTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCceEcCCC-CeEehhhccCCCCCCCCCCCCCCC
Confidence 578999987 499999999999999999999753
No 16
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.63 E-value=3.6e-09 Score=93.52 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=0.0
Q ss_pred CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.+.|.|.++ ..+||..++||+.-||.|||||.++. .|+..+|.|.++ ++|+.+++|||...
T Consensus 67 ~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~d 130 (791)
T 3m0c_C 67 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRD 130 (791)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCccccCCCCCCEeeccccCCCCcCcCCCcccCCccCccccCCeEECCCC----CEECHHHcCCCccc
Confidence 578999883 56999999999999999999998874 588899999986 79999999999763
No 17
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.61 E-value=4.3e-09 Score=92.98 Aligned_cols=61 Identities=28% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC--C--CCCCCCceecccCCceeeeeeccceecCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG--T--SACPNGTFHSHLLTRRFLIQISAKTWNSSS 101 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg--t--~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~ 101 (115)
.++|.|.+|. +|+.+++|||.-||.|||||.. + ..|+...|.|.+. ..++||..++|||..
T Consensus 26 ~~~f~C~~g~-Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~--~~~Ci~~~~~CDg~~ 90 (791)
T 3m0c_C 26 RNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR--VNRCIPQFWRCDGQV 90 (791)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCccCCCCCC-EEehhhcCCCCccCCCCCcccccccccCccCcCccccCCC--CCCEeeccccCCCCc
Confidence 6799999885 9999999999999999999976 2 3688899999983 238999999999975
No 18
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.59 E-value=1.4e-08 Score=61.66 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=29.1
Q ss_pred CCcEEeCC----CCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFD----GSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~----gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.++|+|.+ ...+||.+++||+.-||.|||||.+
T Consensus 9 ~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~ 45 (47)
T 1k7b_A 9 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 45 (47)
T ss_dssp TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred CCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence 67999984 3469999999999999999999964
No 19
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.57 E-value=2.1e-08 Score=60.30 Aligned_cols=32 Identities=38% Similarity=0.661 Sum_probs=29.3
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.++. +||..++||+.-||.|||||..
T Consensus 7 ~~~F~C~~g~-CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 7 STQFKCNSGR-CIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp TTEEECTTSC-EEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCceEeCCCC-eEecCcccCCCCCCCCCCCCCC
Confidence 5789999875 9999999999999999999964
No 20
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.53 E-value=1.7e-08 Score=63.63 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=29.4
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.++|.|.+|. +||.+++|||.-||.|||||.+
T Consensus 9 ~~~F~C~nG~-CIp~~~~CDG~~DC~DgSDE~~ 40 (52)
T 2m0p_A 9 DTQYTCDNHQ-CISKNWVCDTDNDCGDGSDEKN 40 (52)
T ss_dssp SSEEECTTCC-EEETTSTTSSSCSSSSCHHHHS
T ss_pred CCceECCCCC-EEecCccCCCCCCCCCCCcccc
Confidence 5789999885 9999999999999999999965
No 21
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=98.29 E-value=4.6e-07 Score=60.41 Aligned_cols=32 Identities=41% Similarity=0.769 Sum_probs=29.3
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
.+.|+|.++. +|+.+++|||.-||.|||||.+
T Consensus 48 ~~~f~C~~g~-CI~~~~~CDG~~DC~DgSDE~~ 79 (82)
T 2fyj_A 48 LTQFTCNNGR-CININWRCDNDNDCGDNSDEAG 79 (82)
T ss_dssp SSEEECTTSC-EEETTCBSSSSBCCSSSSSCSC
T ss_pred CCceECCCCC-eEcHHHccCCCCcCCCCccccC
Confidence 4899999875 9999999999999999999975
No 22
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=98.23 E-value=4.3e-07 Score=60.57 Aligned_cols=31 Identities=35% Similarity=0.621 Sum_probs=28.6
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP 69 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEp 69 (115)
.+.|+|.++. +||.+++|||..||.|||||.
T Consensus 44 ~~~f~C~~g~-Ci~~~~~CDg~~DC~dgsDE~ 74 (80)
T 2fcw_B 44 PASFQCNSST-CIPQLWACDNDPDCEDGSDEW 74 (80)
T ss_dssp TTEEECTTSC-EEEGGGTTSSSCCSTTCGGGC
T ss_pred ceeeECCCCC-EEecccccCCCcCCCCCCCcC
Confidence 5799998875 999999999999999999994
No 23
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.18 E-value=4.3e-07 Score=71.06 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=37.5
Q ss_pred CCcEEeC-CCCceeccCcccCCcCCCCCCCCCCCC--CCCCCCceecc
Q psy2512 38 ASEFTCF-DGSLTIPFSYVNDDYCDCQDSSDEPGT--SACPNGTFHSH 82 (115)
Q Consensus 38 ~g~F~C~-~gs~~I~~s~vNDg~CDC~DGSDEpgt--~aC~~~~FyC~ 82 (115)
.+.|+|. +...+||.+++|||.-||.|||||.++ ..|+...|.|.
T Consensus 57 ~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c~ 104 (215)
T 2gtl_O 57 EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGD 104 (215)
T ss_dssp TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEEE
T ss_pred CcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCCCcCCCceeee
Confidence 5789994 233599999999999999999999876 36888888874
No 24
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.96 E-value=5.4e-06 Score=65.37 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=34.7
Q ss_pred CCcEEeCC-CCceeccCcccCCcCCCCCCCCCC--CC--C-CCCCC--ceeccc
Q psy2512 38 ASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEP--GT--S-ACPNG--TFHSHL 83 (115)
Q Consensus 38 ~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEp--gt--~-aC~~~--~FyC~n 83 (115)
.+.|+|.+ ...+||..++|||.-||.|||||. .+ . .|+.. ++.|.+
T Consensus 55 ~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~ 108 (220)
T 2gtl_N 55 KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTW 108 (220)
T ss_dssp TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEE
T ss_pred CCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecC
Confidence 57999964 456999999999999999999995 33 3 55443 345654
No 25
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.94 E-value=4.2e-06 Score=65.60 Aligned_cols=32 Identities=31% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCcEEeCC-CCceeccCcccCCcCCCCCCCCCC
Q psy2512 38 ASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEP 69 (115)
Q Consensus 38 ~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEp 69 (115)
++.|+|.+ ...+||.+++|||.-||.|||||.
T Consensus 56 ~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 56 EHESECRGDVPECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCceecCCCCCcEechhhccCCCCCCCCCCccc
Confidence 57899986 445999999999999999999996
No 26
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.73 E-value=2.2e-05 Score=67.58 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=34.6
Q ss_pred CcEEeC-CCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceeccc
Q psy2512 39 SEFTCF-DGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHL 83 (115)
Q Consensus 39 g~F~C~-~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n 83 (115)
++|.|. +|. +||..++|||.-||.|||||..+..++..++-|++
T Consensus 68 ~~f~C~~~g~-Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~ 112 (554)
T 3ojy_A 68 QDFQCKETGR-CLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ 112 (554)
T ss_dssp SSEECSSSCC-EECGGGTTSSSCCSSSCTTSSSCCSCCCCCTTTTT
T ss_pred CcCccCCCCE-EcccccccCCcccCCCccccccCCCCCCCcccccc
Confidence 699998 675 99999999999999999999765333223356764
No 27
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.62 E-value=4.1e-05 Score=65.46 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=35.7
Q ss_pred CcEEeC-CCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceecccC
Q psy2512 39 SEFTCF-DGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLL 84 (115)
Q Consensus 39 g~F~C~-~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~ 84 (115)
.+|.|. +|. +|+..++|||.-||.|||||.. |+...+-|...
T Consensus 69 ~~f~C~~~g~-Ci~~~~~Cdg~~dC~d~sdE~~---c~~~~~~C~~~ 111 (537)
T 3ojy_B 69 EGFVCAQTGR-CVNRRLLCNGDNDCGDQSDEAN---CRRIYKKCQHE 111 (537)
T ss_dssp SSEECTTTCC-EECGGGTTSSSCCSSSSCTTSS---CSSCSSCCSSC
T ss_pred CccCcCCCCc-EeeccccCCCCCCCCCcccccc---CCCCCCccccC
Confidence 689998 675 9999999999999999999975 56566788764
No 28
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.05 E-value=2e-05 Score=61.68 Aligned_cols=42 Identities=5% Similarity=-0.011 Sum_probs=36.2
Q ss_pred CCcCCCCCCCCCCCCCCCCCCceec--ccCCceeeeeeccceecCCCC
Q psy2512 57 DDYCDCQDSSDEPGTSACPNGTFHS--HLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 57 Dg~CDC~DGSDEpgt~aC~~~~FyC--~n~g~~p~~Ipssrv~DG~~~ 102 (115)
-++.+|.|+|||.++..|+...|.| .|+ ++||.+++|||...
T Consensus 38 ~~~~~c~d~sDE~~C~~C~~~~F~C~~~~g----~CIp~~~~CDG~~D 81 (215)
T 2gtl_O 38 RKAGSLRHRVEELEDPSCDEHEHQCGGDDP----QCISKLFVCDGHND 81 (215)
T ss_dssp HHHHHHHHHHHHHSCCSSCTTEEECCSSSC----CEEEGGGTTSSSCC
T ss_pred cccccCCcchhhccCCCCCCcceeeCCCCC----cCccccccCCCCCc
Confidence 3456999999999988899999999 555 89999999999854
No 29
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=96.99 E-value=0.00021 Score=42.85 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=26.0
Q ss_pred CCCCCCCCceeccc-CCceeeeeeccceecCCCC
Q psy2512 70 GTSACPNGTFHSHL-LTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 70 gt~aC~~~~FyC~n-~g~~p~~Ipssrv~DG~~~ 102 (115)
|+.+|+.++|+|.+ .++..++||.++++||+..
T Consensus 1 g~~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~D 34 (47)
T 1jrf_A 1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPD 34 (47)
T ss_dssp CCCCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCC
T ss_pred CCCCCCCCeeECCCCCCCCCeEcCHhhcCCCCcC
Confidence 46789999999995 1223489999999999853
No 30
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=96.55 E-value=0.0012 Score=39.12 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCCCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 70 GTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 70 gt~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
|+..|+..+|.|.|+ ++||..+++||..-
T Consensus 1 G~~~C~~~~F~C~~g----~CI~~~~~CDg~~D 29 (44)
T 1j8e_A 1 GSHSCSSTQFKCNSG----RCIPEHWTCDGDND 29 (44)
T ss_dssp CCSSSCTTEEECTTS----CEEEGGGTTSSSCC
T ss_pred CCCCCCCCceEeCCC----CeEecCcccCCCCC
Confidence 456799999999986 79999999999864
No 31
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=95.99 E-value=0.0039 Score=36.58 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.|+.++|.|.+.| ++||.++++||+..
T Consensus 3 ~C~~~~F~C~~~g---~CI~~~~~CDg~~D 29 (42)
T 1cr8_A 3 GCHTDEFQCRLDG---LCIPLRWRCDGDTD 29 (42)
T ss_dssp CSSTTCEECTTTC---CEECGGGSSSSSCC
T ss_pred CCCCCceEeCCCC---eEcChhhcCCCCcC
Confidence 5999999999744 79999999999864
No 32
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=95.95 E-value=0.0036 Score=56.16 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=33.2
Q ss_pred CcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceeccc
Q psy2512 39 SEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHL 83 (115)
Q Consensus 39 g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n 83 (115)
..|.|.+|. +|+..++|||.-||.|+|||.+ |+..+--|..
T Consensus 121 ~~F~C~~g~-ci~~~~~c~g~~dC~d~sde~~---C~~~~~~C~~ 161 (913)
T 3t5o_A 121 NKFRCDSGR-CIARKLECNGENDCGDNSDERD---CGRTKAVCTR 161 (913)
T ss_dssp SEEECTTSC-EEEGGGSSSSSCCSSSSGGGTT---CSSCCCSSSS
T ss_pred cccccCCCc-eEccceecCCcccCCCcccccc---CCCCCCcccc
Confidence 679999874 9999999999999999999965 5544445653
No 33
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=95.68 E-value=0.0058 Score=36.61 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=23.3
Q ss_pred CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.|+..+|.|.|+ ++||.++++||..-
T Consensus 5 ~C~~~~F~C~~g----~CI~~~~~CDG~~D 30 (45)
T 1d2l_A 5 QCQPGEFACANS----RCIQERWKCDGDND 30 (45)
T ss_dssp BTTBTCEEETTT----EEECGGGTTTSSCT
T ss_pred cCCCCceEcCCC----CeEehhhccCCCCC
Confidence 698899999987 79999999999864
No 34
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=95.67 E-value=0.0051 Score=36.21 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
..|+.++|.|.|.| ++||..+++||+..
T Consensus 5 ~~C~~~~f~C~~~g---~CI~~~~~CDg~~D 32 (43)
T 2jm4_A 5 VKCSLGYFPCGNIT---KCLPQLLHCNGVDD 32 (43)
T ss_dssp CSCCTTEEECSSSS---CEEEGGGTTSSCCC
T ss_pred CCCCCCeeECCCCC---eEcCHhhccCCCCC
Confidence 46999999999833 79999999999864
No 35
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=95.53 E-value=0.0074 Score=51.10 Aligned_cols=32 Identities=34% Similarity=0.640 Sum_probs=29.0
Q ss_pred CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512 38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70 (115)
Q Consensus 38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg 70 (115)
++.|+|.++. +|+..++|||.-||.|||||.+
T Consensus 243 ~~~~~C~~~~-C~~~~~~cdG~~dC~~gsDE~~ 274 (565)
T 2xrc_A 243 GKGFHCKSGV-CIPSQYQCNGEVDCITGEDEVG 274 (565)
T ss_dssp SSCEEETTTE-EECGGGTTSSSCCSSSCTTSSS
T ss_pred CCceecCCCc-ccCccccCCCcccCCCCccccC
Confidence 5689998876 9999999999999999999975
No 36
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=95.36 E-value=0.0094 Score=36.41 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=23.2
Q ss_pred CCCCCCceecc-cCCceeeeeeccceecCCCC
Q psy2512 72 SACPNGTFHSH-LLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 72 ~aC~~~~FyC~-n~g~~p~~Ipssrv~DG~~~ 102 (115)
..|+..+|.|. ++ ++||..+++||..-
T Consensus 5 ~~C~~~~F~C~~~g----~CI~~~~~CDG~~D 32 (50)
T 2knx_A 5 KTCGPSSFSCPGTH----VCVPERWLCDGDKD 32 (50)
T ss_dssp CTTCTTEEEETTTT----EEEETTTTTSSSCC
T ss_pred CCCCCCcEEcCCCC----eEcChhhcCCCCCC
Confidence 46999999997 54 89999999999864
No 37
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=95.30 E-value=0.0081 Score=34.21 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=22.2
Q ss_pred CCCCceecccCCceeeeeeccceecCCCC
Q psy2512 74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
|+..+|.|.++ .+|+.++++||+..
T Consensus 2 C~~~~f~C~~g----~Ci~~~~~CDg~~D 26 (37)
T 1ajj_A 2 CSAFEFHCLSG----ECIHSSWRCDGGPD 26 (37)
T ss_dssp CCTTCEECTTS----CEECGGGTTSSSCC
T ss_pred CCCCceEcCCC----CeechhhccCCCCC
Confidence 78889999986 79999999999864
No 38
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=95.11 E-value=0.011 Score=35.42 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.|+..+|.|.|++ ++|+.++++||+..
T Consensus 6 ~C~~~~F~C~~g~---~CI~~~~~CDG~~D 32 (48)
T 2i1p_A 6 NCTSAQFKCADGS---SCINSRYRCDGVYD 32 (48)
T ss_dssp CCCSSSEECSSSS---CEECGGGSSSSSCC
T ss_pred CCCCCeeECCCCC---EeCCHhhcCCCCCC
Confidence 6888999999873 79999999999864
No 39
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=95.06 E-value=0.0099 Score=35.11 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
..|+..+|.|.|+ ++||..+++||...
T Consensus 6 ~~C~~~~f~C~~g----~CI~~~~~CDg~~D 32 (44)
T 3a7q_B 6 KECEKDQFQCRNE----RCIPSVWRCDEDDD 32 (44)
T ss_dssp --CCTTEEECTTS----CEEEGGGTTSSSCC
T ss_pred CCCCCCceEcCCC----CEeChhhccCCCCC
Confidence 3699999999986 79999999999864
No 40
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=94.62 E-value=0.015 Score=36.23 Aligned_cols=26 Identities=4% Similarity=0.088 Sum_probs=23.3
Q ss_pred CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.|+.+.|.|.|+ ++||.+++|||...
T Consensus 6 ~C~~~~F~C~nG----~CIp~~~~CDG~~D 31 (52)
T 2m0p_A 6 SCLDTQYTCDNH----QCISKNWVCDTDND 31 (52)
T ss_dssp SSCSSEEECTTC----CEEETTSTTSSSCS
T ss_pred CCCCCceECCCC----CEEecCccCCCCCC
Confidence 699999999987 79999999999764
No 41
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=94.58 E-value=0.016 Score=38.36 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=23.8
Q ss_pred CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512 72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
.+|+.+.|+|.+.| ++||.++++||..-
T Consensus 7 ~~C~~~~f~C~~~g---~CIp~~~~CDg~~D 34 (80)
T 2kny_A 7 KTCGPSSFSCPGTH---VCVPERWLCDGDKD 34 (80)
T ss_dssp CCCSSSEEECTTSS---CEEEHHHHTTSSCC
T ss_pred CCCCCCceecCCCC---eEcChhhcCCCCCC
Confidence 47999999999644 89999999999863
No 42
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=94.26 E-value=0.015 Score=33.53 Aligned_cols=27 Identities=4% Similarity=-0.082 Sum_probs=22.0
Q ss_pred CCCCceecccCCceeeeeeccceecCCCC
Q psy2512 74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~ 102 (115)
|+..+|.|.+. ..++||.++++||+..
T Consensus 1 C~~~~f~C~~~--~g~Cip~~~~CDg~~D 27 (39)
T 3dpr_E 1 CRIHEISCGAH--STQCIPVSWRCDGEND 27 (39)
T ss_dssp CCTTTCCCSSS--SSCCCCTTSSSSSSCC
T ss_pred CCCCceecCCC--CCCEeCccccCCCccc
Confidence 67789999982 1289999999999864
No 43
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=94.13 E-value=0.022 Score=33.89 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=22.8
Q ss_pred CCCCCceecccC-CceeeeeeccceecCCCC
Q psy2512 73 ACPNGTFHSHLL-TRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 73 aC~~~~FyC~n~-g~~p~~Ipssrv~DG~~~ 102 (115)
.|+..+|.|.+. ....++||.++++||...
T Consensus 6 ~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~D 36 (47)
T 1k7b_A 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPD 36 (47)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCC
T ss_pred CCCCCceEcCCCCCCCCcCCCccccCCCcCC
Confidence 599999999941 001289999999999863
No 44
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=88.33 E-value=0.2 Score=39.09 Aligned_cols=28 Identities=4% Similarity=-0.071 Sum_probs=23.3
Q ss_pred CCCCCCCceeccc-CCceeeeeeccceecCCC
Q psy2512 71 TSACPNGTFHSHL-LTRRFLIQISAKTWNSSS 101 (115)
Q Consensus 71 t~aC~~~~FyC~n-~g~~p~~Ipssrv~DG~~ 101 (115)
...|+...|.|.| .| .+||.+++|||..
T Consensus 51 ~~~C~~~~F~C~~~~g---~CI~~~~~CDG~~ 79 (217)
T 2gtl_M 51 EHHCDEHESECRGDVP---ECIHDLLFCDGEK 79 (217)
T ss_dssp CCCCCTTEEECSSSSC---CEEEGGGTTSSSC
T ss_pred CCCCCCCceecCCCCC---cEechhhccCCCC
Confidence 3469999999986 33 7999999999975
No 45
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=69.19 E-value=2.1 Score=33.55 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=21.6
Q ss_pred CCCCCceecccCCceeeeeeccceecCCC
Q psy2512 73 ACPNGTFHSHLLTRRFLIQISAKTWNSSS 101 (115)
Q Consensus 73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~ 101 (115)
.|+...|.|.+. ...+||..++|||..
T Consensus 52 ~C~~~eFqC~~~--~g~CIp~~wvCDG~~ 78 (220)
T 2gtl_N 52 HCEKRTFQCGGN--EQECISDLLVCDGHK 78 (220)
T ss_dssp SSCTTEEECCSS--SCCEEETTTTTSSSC
T ss_pred CCCCCccCcCCC--CCcEeCcceecCCCC
Confidence 588899999631 127999999999975
No 46
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=53.65 E-value=7.7 Score=32.92 Aligned_cols=22 Identities=9% Similarity=-0.142 Sum_probs=19.6
Q ss_pred Cceecc-cCCceeeeeeccceecCCCC
Q psy2512 77 GTFHSH-LLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 77 ~~FyC~-n~g~~p~~Ipssrv~DG~~~ 102 (115)
.+|.|. |+ ++|+..++|||...
T Consensus 69 ~~f~C~~~g----~Ci~~~~~Cdg~~d 91 (537)
T 3ojy_B 69 EGFVCAQTG----RCVNRRLLCNGDND 91 (537)
T ss_dssp SSEECTTTC----CEECGGGTTSSSCC
T ss_pred CccCcCCCC----cEeeccccCCCCCC
Confidence 799999 76 89999999999864
No 47
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=40.68 E-value=17 Score=31.04 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=21.1
Q ss_pred CCCCCceecc-cCCceeeeeeccceecCCCC
Q psy2512 73 ACPNGTFHSH-LLTRRFLIQISAKTWNSSSQ 102 (115)
Q Consensus 73 aC~~~~FyC~-n~g~~p~~Ipssrv~DG~~~ 102 (115)
.|+ .+|.|. |+ ++||..++|||...
T Consensus 65 ~c~-~~f~C~~~g----~Ci~~~~~Cdg~~d 90 (554)
T 3ojy_A 65 QCG-QDFQCKETG----RCLKRHLVCNGDQD 90 (554)
T ss_dssp CCS-SSEECSSSC----CEECGGGTTSSSCC
T ss_pred CCC-CcCccCCCC----EEcccccccCCccc
Confidence 375 799999 76 89999999999764
No 48
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=33.90 E-value=12 Score=31.87 Aligned_cols=31 Identities=35% Similarity=0.816 Sum_probs=20.0
Q ss_pred eeccCcccCCcCCCCCCCCCCCCCCCC--CCceecc
Q psy2512 49 TIPFSYVNDDYCDCQDSSDEPGTSACP--NGTFHSH 82 (115)
Q Consensus 49 ~I~~s~vNDg~CDC~DGSDEpgt~aC~--~~~FyC~ 82 (115)
.|....+|| |+|.+. .|+..+.|. +|.|.|-
T Consensus 426 ~v~v~~~C~--C~C~~~-~~~~s~~C~~g~G~~~CG 458 (472)
T 3t3p_B 426 IVQVTFDCD--CACQAQ-AEPNSHRCNNGNGTFECG 458 (472)
T ss_dssp EEEEEECCS--CGGGGG-CBTTCTTTTTTTEEEETT
T ss_pred EEEEeeccc--CCCCCC-CCCCCcccCCCCeeEeCC
Confidence 344455666 777663 356667896 6788884
No 49
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=29.43 E-value=15 Score=31.78 Aligned_cols=30 Identities=23% Similarity=0.750 Sum_probs=3.9
Q ss_pred eeccCcccCCcCCCCCCCCCCCCCCCC--CCceecc
Q psy2512 49 TIPFSYVNDDYCDCQDSSDEPGTSACP--NGTFHSH 82 (115)
Q Consensus 49 ~I~~s~vNDg~CDC~DGSDEpgt~aC~--~~~FyC~ 82 (115)
.|....+|| |+|.+. ++....|. +|.|.|-
T Consensus 448 ~V~v~~~C~--C~C~~~--~~~s~~C~~g~G~~~CG 479 (503)
T 3v4v_B 448 IVELHTLCD--CNCSDT--QPQAPHCSDGQGHLQCG 479 (503)
T ss_dssp EEECCCC-----------------------------
T ss_pred EEEEecccC--CCCCCC--CCCCcccCCCCeeEeCC
Confidence 355556777 888763 56666896 6788874
Done!