RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2512
(115 letters)
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding
module, COMP repeat, calcium, cell membrane, coated
PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 42.9 bits (101), Expect = 7e-07
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSH 82
S F+C + +P ++ D DC D +DE + C + S
Sbjct: 10 GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSG 55
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 40.8 bits (96), Expect = 2e-06
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNG 77
+++F C DGS I Y D DC+D+SDE G P G
Sbjct: 8 TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 39.3 bits (92), Expect = 7e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSAC-PNGT 78
S F+C + +P ++ D DC D +DE + C N T
Sbjct: 8 GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
>2fyj_A Low-density lipoprotein receptor-related protein 1; double
module, complement type repeat, calcium, beta-2
hairpin, loop-structures; NMR {Homo sapiens} PDB:
2fyl_B
Length = 82
Score = 39.2 bits (92), Expect = 1e-05
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE----PGTSACPNGTFH 80
P ++F+C G IP S+ D DC D SDE + P F
Sbjct: 6 PPNQFSCASGR-CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFT 52
Score = 33.8 bits (78), Expect = 0.002
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
P ++FTC +G I ++ D+ DC D+SDE G C +
Sbjct: 47 PLTQFTCNNGR-CININWRCDNDNDCGDNSDEAG---CSH 82
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 38.8 bits (91), Expect = 2e-05
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG--TSACPNGTFH 80
+EF C DG I +V D DC D SDE C +F
Sbjct: 4 SQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQ 48
Score = 32.2 bits (74), Expect = 0.007
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70
+ F C + IP + D+ DC+D SDE
Sbjct: 43 GPASFQCNSST-CIPQLWACDNDPDCEDGSDEWP 75
>1cr8_A Protein (LOW density lipoprotein receptor related protein);
ligand binding, calcium binding, LDLR, LRP, lipid
binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 34.2 bits (79), Expect = 5e-04
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
EF C L IP + D DC DSSDE C
Sbjct: 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS---CEG 41
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 36.4 bits (83), Expect = 0.001
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPG--TSACPNGTF 79
+ +F+C IP + D DC + SDE G C F
Sbjct: 66 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEF 111
Score = 35.6 bits (81), Expect = 0.002
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG--TSACPNGTFH 80
EF C DG I +V D DC D SDE C +F
Sbjct: 107 SQDEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQ 151
Score = 34.0 bits (77), Expect = 0.007
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS----ACPNGTFH 80
+EF C DG I + +V D +CQD SDE + C +G F
Sbjct: 25 ERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFS 71
Score = 33.3 bits (75), Expect = 0.011
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 35 YQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHS 81
+ ++F C G I V + DC+D SDEP N +
Sbjct: 273 CEGPNKFKCHSGE-CITLDKVCNMARDCRDWSDEPIKECGTNECLDN 318
Score = 32.9 bits (74), Expect = 0.015
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG--TSACPNGTF 79
A EF C G I S+ D DC+D SDE + C F
Sbjct: 195 SAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENCAVATCRPDEF 238
Score = 32.1 bits (72), Expect = 0.025
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG----TSACPNGTFH 80
EF C DG+ I S D DC+D SDE G T F
Sbjct: 234 RPDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFK 280
Score = 31.3 bits (70), Expect = 0.054
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSH 82
+ F C + IP + D+ DC+D SDE F
Sbjct: 146 GPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 190
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB:
2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 35.9 bits (82), Expect = 0.001
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG----TSACPNGTFH 80
+EF C DG I + +V D +CQD SDE + C +G F
Sbjct: 7 ERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFS 53
Score = 35.9 bits (82), Expect = 0.001
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSA--CPNGTFH 80
EF C DG I +V D DC D SDE C +F
Sbjct: 89 SQDEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQ 133
Score = 35.2 bits (80), Expect = 0.003
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPG--TSACPNGTF 79
+ +F+C IP + D DC + SDE G C F
Sbjct: 48 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEF 93
Score = 32.9 bits (74), Expect = 0.014
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE----PGTSACPNGTF 79
EF C DG+ I S D DC+D SDE T F
Sbjct: 216 RPDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKF 261
Score = 32.9 bits (74), Expect = 0.017
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSH 82
+ F C + S IP + D+ DC+D SDE F
Sbjct: 128 GPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 172
Score = 32.5 bits (73), Expect = 0.019
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP--GTSACPNGTF 79
A EF C G I S+ D DC+D SDE + C F
Sbjct: 177 SAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENCAVATCRPDEF 220
Score = 32.5 bits (73), Expect = 0.022
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
++F C G I V + DC+D SDEP N
Sbjct: 257 GPNKFKCHSGE-CITLDKVCNMARDCRDWSDEPIKECGTN 295
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 33.1 bits (76), Expect = 0.001
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPGTSACPN 76
E +C S IP S+ D DC DE C N
Sbjct: 2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN---CGN 39
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 35.2 bits (80), Expect = 0.002
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPG--TSACPNGTFH 80
E C I +V D + DC++ DE F
Sbjct: 56 DEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFI 102
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand
binding, calcium binding, complement-like repeat, LRP
receptor, signaling protein; 1.85A {Homo sapiens} SCOP:
g.12.1.1
Length = 44
Score = 33.0 bits (76), Expect = 0.002
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG 70
+++F C G IP + D DC D SDE
Sbjct: 6 SSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETH 38
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor,
cysteine-rich module, calcium; 1.70A {Homo sapiens}
SCOP: g.12.1.1
Length = 37
Score = 32.5 bits (75), Expect = 0.002
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
A EF C G I S+ D DC+D SDE
Sbjct: 3 SAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDE 33
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 32.3 bits (74), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
EF C + I + D DC D+SDE
Sbjct: 7 QPGEFACANSR-CIQERWKCDGDNDCLDNSDE 37
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 34.5 bits (79), Expect = 0.004
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 39 SEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFH 80
F C +G I D DC D SDE AC FH
Sbjct: 207 DFFQCVNGK-YISQMKACDGINDCGDQSDELCCKACQGKGFH 247
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800
and PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 31.7 bits (72), Expect = 0.005
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 37 PASEFTCFDGSLT----IPFSYVNDDYCDCQDSSDEPGTSACP 75
P +F C + P ++ D + DC D DE G C
Sbjct: 6 PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG---CG 45
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 31.6 bits (72), Expect = 0.006
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
F C + + +P + DC + +DE
Sbjct: 8 SLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 32.9 bits (74), Expect = 0.012
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPGTSACPNGTFH 80
E C I D DC+D SDE + C H
Sbjct: 55 DEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET-CSLNITH 98
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 30.9 bits (70), Expect = 0.013
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 37 PASEFTCFDGSLT----IPFSYVNDDYCDCQDSSDE 68
P +F C + P ++ D + DC D DE
Sbjct: 8 PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 30.7 bits (70), Expect = 0.014
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACP 75
+F C + IP + D+ DC D SDE CP
Sbjct: 9 EKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDD---CP 43
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal
bilayer, dihedral D6 symmetry; HET: HEM; 3.50A
{Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 31.0 bits (69), Expect = 0.063
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPGTSACPNGTFH 80
F C I V D + DC ++ DE C
Sbjct: 54 EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE-DPDVCDTSVVK 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.71
Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 3/13 (23%)
Query: 73 ACPNGTFHSHLLT 85
A P FHSHLL
Sbjct: 424 ASP---FHSHLLV 433
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A*
3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 27.1 bits (60), Expect = 1.0
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 5/31 (16%)
Query: 55 VNDDYCDCQDSSDEPGT----SACPNGTFHS 81
YC C+ DE C N +H
Sbjct: 6 DTKLYCICKTPEDESKFYIGCDRCQNW-YHG 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.3
Identities = 18/98 (18%), Positives = 23/98 (23%), Gaps = 37/98 (37%)
Query: 1 MSGF----VTLGVL----------FSSIWLTSSDVLRPRGVSLMRASLY-QPASEFTCF- 44
+ G V L V F WL + P V M L Q +T
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 45 DGSLTIPF----------------SYVN-----DDYCD 61
D S I Y N + +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 25.7 bits (57), Expect = 4.5
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 40 EFTCF-DGSLTIPFSYVND 57
++ CF +P Y++D
Sbjct: 200 KYECFLSSETKMPMMYMDD 218
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 25.3 bits (54), Expect = 6.4
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 42 TCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFH 80
F L + + D C+C D+ + + G
Sbjct: 441 LGFSEELIVELHTLCD--CNCSDTQPQAPHCSDGQGHLQ 477
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.421
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,703,084
Number of extensions: 81297
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 47
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)